Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304340 | XP_003597836.2 | 96.452 | 451 | 8 | 1 | 1 | 451 | 1 | 443 | 0.0 | 893 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304340 | sp|Q4VA72|BRCC3_XENTR | 46.032 | 189 | 85 | 4 | 1 | 184 | 1 | 177 | 9.61e-49 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304340 | G7IMH2 | 96.452 | 451 | 8 | 1 | 1 | 451 | 1 | 443 | 0.0 | 893 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094910 | Msa0304340 | 0.896401 | 3.822757e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304340 | MtrunA17_Chr2g0332611 | 97.802 | 364 | 7 | 1 | 89 | 451 | 1 | 364 | 0.0 | 731 |
| Msa0304340 | MtrunA17_Chr2g0332601 | 97.674 | 86 | 2 | 0 | 1 | 86 | 1 | 86 | 8.57e-55 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304340 | AT1G80210.1 | 66.910 | 411 | 116 | 7 | 1 | 407 | 1 | 395 | 0.0 | 539 |
| Msa0304340 | AT1G80210.2 | 68.146 | 383 | 104 | 6 | 1 | 379 | 1 | 369 | 0.0 | 520 |
| Msa0304340 | AT3G06820.3 | 67.830 | 401 | 110 | 6 | 1 | 395 | 1 | 388 | 0.0 | 513 |
| Msa0304340 | AT3G06820.2 | 67.830 | 401 | 110 | 6 | 1 | 395 | 1 | 388 | 0.0 | 513 |
| Msa0304340 | AT3G06820.1 | 65.385 | 312 | 98 | 4 | 89 | 395 | 1 | 307 | 6.11e-132 | 384 |
Find 121 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTGATTCTGGGTTTAT+TGG | 0.115541 | 2_3:+61643979 | Msa0304340:CDS |
| CGATGCTCAGTGAAATATTT+TGG | 0.127476 | 2_3:+61646782 | Msa0304340:three_prime_UTR |
| ATGTATCAACTTCTTGATTC+TGG | 0.141321 | 2_3:+61643970 | Msa0304340:CDS |
| CTATTAATCTTTAACCTAAT+TGG | 0.182784 | 2_3:-61641446 | None:intergenic |
| CACTGAAACCGAAGAGATTA+TGG | 0.203215 | 2_3:+61641702 | Msa0304340:CDS |
| TTCTTGATTCTGGGTTTATT+GGG | 0.251629 | 2_3:+61643980 | Msa0304340:CDS |
| ACACCACACTTCGACTTATC+AGG | 0.275809 | 2_3:+61645878 | Msa0304340:CDS |
| ATTTGTTTAATTAGCCAATT+AGG | 0.275927 | 2_3:+61641432 | Msa0304340:five_prime_UTR |
| TTGTTCCTCCAAGAATAAAA+TGG | 0.292010 | 2_3:-61646850 | None:intergenic |
| AGCTATGCACCGCTCAAATA+TGG | 0.296293 | 2_3:+61644851 | Msa0304340:CDS |
| AAAATTAAATCAGGACTATA+CGG | 0.302565 | 2_3:+61646919 | Msa0304340:three_prime_UTR |
| GAGATTATGGGTCTTCTTCT+TGG | 0.309605 | 2_3:+61641715 | Msa0304340:CDS |
| GAATCACCAGTGTCCTGCTC+TGG | 0.330705 | 2_3:-61644299 | None:intergenic |
| TCTTGAAGTGCGTTGATTGC+AGG | 0.331174 | 2_3:-61646028 | None:intergenic |
| AGTTATCTCAATGACATTCA+TGG | 0.337538 | 2_3:+61646878 | Msa0304340:three_prime_UTR |
| AATAACACAGAACAAGAAAA+AGG | 0.353636 | 2_3:-61641997 | None:intergenic |
| GGAGTGTGACTGCATTGATA+TGG | 0.369051 | 2_3:+61641880 | Msa0304340:CDS |
| TGTATCAACTTCTTGATTCT+GGG | 0.370430 | 2_3:+61643971 | Msa0304340:CDS |
| GACTAAGAGAGAATGAAATT+CGG | 0.373072 | 2_3:+61646053 | Msa0304340:CDS |
| GAAGCAGCAGCCAACTGTTC+AGG | 0.373869 | 2_3:-61641957 | None:intergenic |
| TGAAAATGTCCGAAGAAGTT+TGG | 0.381529 | 2_3:+61641653 | Msa0304340:CDS |
| AATGCCGATGCCAACTATCT+AGG | 0.394026 | 2_3:+61644738 | Msa0304340:CDS |
| AGTTATGTCAAAATTAAATC+AGG | 0.397209 | 2_3:+61646910 | Msa0304340:three_prime_UTR |
| AGAGGGAGTGAAGCAAGTTT+AGG | 0.400423 | 2_3:+61646475 | Msa0304340:CDS |
| CGTCGATCAGACCTTGTTTG+AGG | 0.408498 | 2_3:-61641912 | None:intergenic |
| GAGTGAAGAAGCCAAGAGTC+TGG | 0.408537 | 2_3:+61646432 | Msa0304340:CDS |
| ACTGAAACCGAAGAGATTAT+GGG | 0.413726 | 2_3:+61641703 | Msa0304340:CDS |
| AGATGAACTTCCTCGATGTA+TGG | 0.414680 | 2_3:-61646539 | None:intergenic |
| ACTAAGAGAGAATGAAATTC+GGG | 0.428257 | 2_3:+61646054 | Msa0304340:CDS |
| TGATGAATCTATATGAATAA+TGG | 0.429530 | 2_3:-61644222 | None:intergenic |
| GACAATTTAACAACAAGATC+TGG | 0.432323 | 2_3:+61644257 | Msa0304340:CDS |
| CACAGAATGACTGTTACAAC+TGG | 0.444669 | 2_3:+61642606 | Msa0304340:CDS |
| GCATGTTAACCAAACTTCTT+CGG | 0.444704 | 2_3:-61641662 | None:intergenic |
| CCTGGTAGCCGGAGCAGAAA+AGG | 0.449380 | 2_3:+61646622 | Msa0304340:CDS |
| TCTTCTTCTTGGCGATATCC+AGG | 0.452533 | 2_3:+61641726 | Msa0304340:CDS |
| AACAAGATCTGGTTACTTCA+AGG | 0.457060 | 2_3:+61644268 | Msa0304340:CDS |
| TGCCTCCGCCTCCAGACTCT+TGG | 0.459710 | 2_3:-61646443 | None:intergenic |
| AGCCAAGAGTCTGGAGGCGG+AGG | 0.461420 | 2_3:+61646441 | Msa0304340:CDS |
| GGAAGAACAACGAGGGTGAT+AGG | 0.461704 | 2_3:+61642627 | Msa0304340:CDS |
| AAGAAGACCCATAATCTCTT+CGG | 0.464604 | 2_3:-61641710 | None:intergenic |
| GAGAAGTGCTGGTGCTAGTA+AGG | 0.473131 | 2_3:+61644322 | Msa0304340:CDS |
| TAAACTTGCTTCACTCCCTC+TGG | 0.474010 | 2_3:-61646473 | None:intergenic |
| TATGGGAGATGCAACTTGAC+GGG | 0.478253 | 2_3:-61646521 | None:intergenic |
| TAGATAGTTGGCATCGGCAT+TGG | 0.478653 | 2_3:-61644736 | None:intergenic |
| TCTGCTTTCCATCAGATGAC+TGG | 0.487274 | 2_3:-61644154 | None:intergenic |
| GAGTGTGACTGCATTGATAT+GGG | 0.495477 | 2_3:+61641881 | Msa0304340:CDS |
| ATGCCGATGCCAACTATCTA+GGG | 0.495958 | 2_3:+61644739 | Msa0304340:CDS |
| GGTTGAAGAAGGAGGCGAGA+GGG | 0.499327 | 2_3:+61641519 | Msa0304340:five_prime_UTR |
| CATACTTTCTGACATATCCA+TGG | 0.509731 | 2_3:-61644823 | None:intergenic |
| CAGAGTTCAAGTGAATCTCT+TGG | 0.511986 | 2_3:+61646580 | Msa0304340:CDS |
| ATTGCTTTCCAGTCATCTGA+TGG | 0.523557 | 2_3:+61644146 | Msa0304340:CDS |
| CTCTGCGAGTTTCTTTGACG+AGG | 0.523918 | 2_3:-61646562 | None:intergenic |
| AATCACCAGTGTCCTGCTCT+GGG | 0.524238 | 2_3:-61644298 | None:intergenic |
| CATAATCTCTTCGGTTTCAG+TGG | 0.524734 | 2_3:-61641701 | None:intergenic |
| TTTACAGGAGACAGAGGTAT+GGG | 0.525737 | 2_3:-61644191 | None:intergenic |
| GATGAACTTCCTCGATGTAT+GGG | 0.533300 | 2_3:-61646538 | None:intergenic |
| TAGACAGTTGAGGTTGAAGA+AGG | 0.533784 | 2_3:+61641508 | Msa0304340:five_prime_UTR |
| ATGATGATAGCGGCGAATCA+AGG | 0.533813 | 2_3:-61645613 | None:intergenic |
| TAACAATGTTGAATTCTCGT+TGG | 0.537203 | 2_3:+61646646 | Msa0304340:exon |
| TACAATTGTGAGTGGTGACT+TGG | 0.540547 | 2_3:+61646827 | Msa0304340:three_prime_UTR |
| ATCTCAATGACATTCATGGT+TGG | 0.540600 | 2_3:+61646882 | Msa0304340:three_prime_UTR |
| GTTAAATTGTCTGAGGAACT+TGG | 0.540855 | 2_3:-61644245 | None:intergenic |
| GTATGGGAGATGCAACTTGA+CGG | 0.541009 | 2_3:-61646522 | None:intergenic |
| ACGGGGAGAAGCAACTAGAC+GGG | 0.542351 | 2_3:-61646503 | None:intergenic |
| TCAAAGAGTGTAGCTAGTCC+TGG | 0.543158 | 2_3:+61646604 | Msa0304340:CDS |
| CAAGGATGGCAGCACATGAA+GGG | 0.544109 | 2_3:-61645579 | None:intergenic |
| CAAGGGAGATAGCCCAGAGC+AGG | 0.545536 | 2_3:+61644286 | Msa0304340:CDS |
| ATTTACAGGAGACAGAGGTA+TGG | 0.546956 | 2_3:-61644192 | None:intergenic |
| TGTGCAAGTTGATTGAGTAT+TGG | 0.549213 | 2_3:+61645907 | Msa0304340:CDS |
| TATCTAGGGAGCGTAAAAGA+TGG | 0.550604 | 2_3:+61644753 | Msa0304340:CDS |
| GAACAACGAGGGTGATAGGC+TGG | 0.559162 | 2_3:+61642631 | Msa0304340:CDS |
| GTGTAGCTAGTCCTGGTAGC+CGG | 0.559875 | 2_3:+61646611 | Msa0304340:CDS |
| TGGTGCAGAGTATATTAGAA+AGG | 0.560870 | 2_3:+61645550 | Msa0304340:CDS |
| ACAAGGATGGCAGCACATGA+AGG | 0.562454 | 2_3:-61645580 | None:intergenic |
| ACAAGATCTGGTTACTTCAA+GGG | 0.568314 | 2_3:+61644269 | Msa0304340:CDS |
| AAATTAAATCAGGACTATAC+GGG | 0.570034 | 2_3:+61646920 | Msa0304340:three_prime_UTR |
| ACTGGTGATTCGAGAAGTGC+TGG | 0.570423 | 2_3:+61644311 | Msa0304340:CDS |
| GACGGGGAGAAGCAACTAGA+CGG | 0.572216 | 2_3:-61646504 | None:intergenic |
| ACATACCGACATGTGAAGGC+AGG | 0.575866 | 2_3:-61642680 | None:intergenic |
| AGAAGCCAAGAGTCTGGAGG+CGG | 0.576842 | 2_3:+61646438 | Msa0304340:CDS |
| GCAACATGTACTATTTGAAG+AGG | 0.579067 | 2_3:+61645646 | Msa0304340:CDS |
| CAGTAATATGAGGATGTGAA+TGG | 0.584536 | 2_3:-61642656 | None:intergenic |
| GGATATGTCAGAAAGTATGC+AGG | 0.584919 | 2_3:+61644827 | Msa0304340:CDS |
| CATTGCAGTTGATGATCCCA+TGG | 0.590197 | 2_3:+61644806 | Msa0304340:CDS |
| GAAGGCAGGACAGTAATATG+AGG | 0.590307 | 2_3:-61642666 | None:intergenic |
| TCTTGTTGTTAAATTGTCTG+AGG | 0.596310 | 2_3:-61644252 | None:intergenic |
| ACAGTTGAGGTTGAAGAAGG+AGG | 0.602951 | 2_3:+61641511 | Msa0304340:five_prime_UTR |
| GATAGCCCAGAGCAGGACAC+TGG | 0.603898 | 2_3:+61644293 | Msa0304340:CDS |
| AGGTTGAAGAAGGAGGCGAG+AGG | 0.607767 | 2_3:+61641518 | Msa0304340:five_prime_UTR |
| AAGTACATACCGACATGTGA+AGG | 0.609102 | 2_3:-61642684 | None:intergenic |
| AAGCCATCTTACAAAATACA+AGG | 0.610913 | 2_3:+61645687 | Msa0304340:CDS |
| ATGTACTATTTGAAGAGGAA+CGG | 0.613140 | 2_3:+61645651 | Msa0304340:CDS |
| TGTTTCTGACTAGACAGTTG+AGG | 0.614389 | 2_3:+61641498 | Msa0304340:five_prime_UTR |
| ATACTTTCTGACATATCCAT+GGG | 0.614506 | 2_3:-61644822 | None:intergenic |
| ACTGTCCTGCCTTCACATGT+CGG | 0.615521 | 2_3:+61642675 | Msa0304340:CDS |
| TTCGCCGCTATCATCATACA+AGG | 0.623157 | 2_3:+61645619 | Msa0304340:CDS |
| TTACAACGAAGATGCAAACA+AGG | 0.623673 | 2_3:+61644017 | Msa0304340:CDS |
| AAGGATGGCAGCACATGAAG+GGG | 0.623863 | 2_3:-61645578 | None:intergenic |
| TGAAACTAATCCTGAACAGT+TGG | 0.624149 | 2_3:+61641947 | Msa0304340:CDS |
| GCGGAGGCATCTACGTCCAG+AGG | 0.627316 | 2_3:+61646457 | Msa0304340:CDS |
| GCTCCCTAGATAGTTGGCAT+CGG | 0.649706 | 2_3:-61644742 | None:intergenic |
| GGGGTGCATCTCCTCAAACA+AGG | 0.651860 | 2_3:+61641901 | Msa0304340:CDS |
| CGGGGAGAAGCAACTAGACG+GGG | 0.653934 | 2_3:-61646502 | None:intergenic |
| ATCAAGGTTGATAAAAGACA+AGG | 0.656437 | 2_3:-61645597 | None:intergenic |
| CGGAGGCATCTACGTCCAGA+GGG | 0.659336 | 2_3:+61646458 | Msa0304340:CDS |
| AGTGTGACTGCATTGATATG+GGG | 0.661338 | 2_3:+61641882 | Msa0304340:CDS |
| ACCTCATGTCCATATTTGAG+CGG | 0.663052 | 2_3:-61644860 | None:intergenic |
| ATGGGAGATGCAACTTGACG+GGG | 0.663091 | 2_3:-61646520 | None:intergenic |
| CACCACTCACAATTGTACAC+AGG | 0.666140 | 2_3:-61646821 | None:intergenic |
| ACCGCTCAAATATGGACATG+AGG | 0.667262 | 2_3:+61644859 | Msa0304340:CDS |
| TGAAGAAGCCAAGAGTCTGG+AGG | 0.667597 | 2_3:+61646435 | Msa0304340:CDS |
| AAGCCTGATAAGTCGAAGTG+TGG | 0.672156 | 2_3:-61645881 | None:intergenic |
| GTGTGGTGTATGAAAGCGAG+TGG | 0.677265 | 2_3:-61645864 | None:intergenic |
| ATACTCAATCAACTTGCACA+AGG | 0.679543 | 2_3:-61645904 | None:intergenic |
| AGATCCTTGTATGATGATAG+CGG | 0.689342 | 2_3:-61645623 | None:intergenic |
| ACATAGAATGTACATGATAG+CGG | 0.690172 | 2_3:+61646725 | Msa0304340:three_prime_UTR |
| TACAACTGGAAGAACAACGA+GGG | 0.713101 | 2_3:+61642620 | Msa0304340:CDS |
| AGGTTGATAAAAGACAAGGA+TGG | 0.722279 | 2_3:-61645593 | None:intergenic |
| TACCTGTGTACAATTGTGAG+TGG | 0.729721 | 2_3:+61646819 | Msa0304340:three_prime_UTR |
| GTTGCATCTCCCATACATCG+AGG | 0.759729 | 2_3:+61646529 | Msa0304340:CDS |
| TTACAACTGGAAGAACAACG+AGG | 0.766921 | 2_3:+61642619 | Msa0304340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAATAAAGAAAAAAT+TGG | - | chr2_3:61641764-61641783 | None:intergenic | 10.0% |
| !!! | AATAAAGAATTATTACTTTT+TGG | + | chr2_3:61645993-61646012 | Msa0304340:intron | 10.0% |
| !!! | TATTAAAATTTTCAACTTGA+TGG | - | chr2_3:61641407-61641426 | None:intergenic | 15.0% |
| !!! | AAAACTCATTTTTAATTCAA+TGG | + | chr2_3:61642040-61642059 | Msa0304340:intron | 15.0% |
| !!! | TTTAAATTGTAATTTTTCCT+AGG | + | chr2_3:61644677-61644696 | Msa0304340:intron | 15.0% |
| !!! | TTAAATTGTAATTTTTCCTA+GGG | + | chr2_3:61644678-61644697 | Msa0304340:intron | 15.0% |
| !!! | GTTTTAAAATAACACATATT+TGG | + | chr2_3:61645521-61645540 | Msa0304340:intron | 15.0% |
| !! | AAATAGGACTAATAAATAAA+CGG | - | chr2_3:61645953-61645972 | None:intergenic | 15.0% |
| !!! | TTTATTAGTCCTATTTTTAT+TGG | + | chr2_3:61645957-61645976 | Msa0304340:intron | 15.0% |
| !! | GTAAATAACAGTAAAAAAAT+TGG | - | chr2_3:61646200-61646219 | None:intergenic | 15.0% |
| !!! | AAGTTGAAAATTTTAATAGC+TGG | + | chr2_3:61641409-61641428 | Msa0304340:five_prime_UTR | 20.0% |
| !! | ATTTGTTTAATTAGCCAATT+AGG | + | chr2_3:61641432-61641451 | Msa0304340:five_prime_UTR | 20.0% |
| !! | CTATTAATCTTTAACCTAAT+TGG | - | chr2_3:61641449-61641468 | None:intergenic | 20.0% |
| !!! | AGAATGAGATTATCATTTTA+GGG | + | chr2_3:61641572-61641591 | Msa0304340:five_prime_UTR | 20.0% |
| !!! | ATTATCATTTTAGGGTTTTT+AGG | + | chr2_3:61641580-61641599 | Msa0304340:five_prime_UTR | 20.0% |
| !!! | TTATCATTTTAGGGTTTTTA+GGG | + | chr2_3:61641581-61641600 | Msa0304340:five_prime_UTR | 20.0% |
| !! | AACATTGTGAAATACAAATT+GGG | - | chr2_3:61641815-61641834 | None:intergenic | 20.0% |
| !! | ATAGACTATAAATAATAGGT+AGG | - | chr2_3:61643210-61643229 | None:intergenic | 20.0% |
| !! | GATGATAGACTATAAATAAT+AGG | - | chr2_3:61643214-61643233 | None:intergenic | 20.0% |
| !! | TGATGAATCTATATGAATAA+TGG | - | chr2_3:61644225-61644244 | None:intergenic | 20.0% |
| !! | AAATGCAATTATGATTATAC+TGG | - | chr2_3:61644599-61644618 | None:intergenic | 20.0% |
| !! | GTCAAACTTTGAATTATAAA+TGG | + | chr2_3:61645366-61645385 | Msa0304340:intron | 20.0% |
| !! | TTAAAATAACACATATTTGG+TGG | + | chr2_3:61645524-61645543 | Msa0304340:intron | 20.0% |
| !!! | CGTACATATATGAAATTTTA+TGG | + | chr2_3:61645742-61645761 | Msa0304340:intron | 20.0% |
| !!! | ATTTTATGGAAACACTATTT+TGG | + | chr2_3:61645756-61645775 | Msa0304340:intron | 20.0% |
| !!! | TTTTATGGAAACACTATTTT+GGG | + | chr2_3:61645757-61645776 | Msa0304340:intron | 20.0% |
| !! | AATAGGACTAATAAATAAAC+GGG | - | chr2_3:61645952-61645971 | None:intergenic | 20.0% |
| !! | AAGAACAAACCAATAAAAAT+AGG | - | chr2_3:61645969-61645988 | None:intergenic | 20.0% |
| !! | TTGGAAATAAAATTTCATAG+AGG | - | chr2_3:61646181-61646200 | None:intergenic | 20.0% |
| !!! | TTTTTACTGTTATTTACAGA+AGG | + | chr2_3:61646203-61646222 | Msa0304340:intron | 20.0% |
| !!! | TTAGTTCTGAATCTTAATTA+GGG | - | chr2_3:61646229-61646248 | None:intergenic | 20.0% |
| !! | AGTTATGTCAAAATTAAATC+AGG | + | chr2_3:61646910-61646929 | Msa0304340:three_prime_UTR | 20.0% |
| !! | AAAATTAAATCAGGACTATA+CGG | + | chr2_3:61646919-61646938 | Msa0304340:three_prime_UTR | 20.0% |
| !! | GAGAATGAGATTATCATTTT+AGG | + | chr2_3:61641571-61641590 | Msa0304340:five_prime_UTR | 25.0% |
| ! | ACATTGTGAAATACAAATTG+GGG | - | chr2_3:61641814-61641833 | None:intergenic | 25.0% |
| ! | CAACATTGTGAAATACAAAT+TGG | - | chr2_3:61641816-61641835 | None:intergenic | 25.0% |
| ! | AATAACACAGAACAAGAAAA+AGG | - | chr2_3:61642000-61642019 | None:intergenic | 25.0% |
| ! | ATTTCTAATTGAAACATGTG+TGG | - | chr2_3:61642203-61642222 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTAACCAAACA+GGG | - | chr2_3:61642253-61642272 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTAACCAAAC+AGG | - | chr2_3:61642254-61642273 | None:intergenic | 25.0% |
| ! | TGTATAACATAAAGGATGTT+AGG | - | chr2_3:61642901-61642920 | None:intergenic | 25.0% |
| ! | ATATGAATCAAATATGTTGC+TGG | + | chr2_3:61643035-61643054 | Msa0304340:intron | 25.0% |
| ! | ATAGATACTAGATCAAAATG+TGG | + | chr2_3:61643070-61643089 | Msa0304340:intron | 25.0% |
| ! | CTTGAATACATTGAATGTAA+TGG | - | chr2_3:61643125-61643144 | None:intergenic | 25.0% |
| !!! | ATTTACTTTGGTTTTGGATA+GGG | - | chr2_3:61643174-61643193 | None:intergenic | 25.0% |
| ! | CTGTTTCAATTAAACAATAC+AGG | - | chr2_3:61643346-61643365 | None:intergenic | 25.0% |
| !!! | TGCTATTTATACTTCACTTT+TGG | + | chr2_3:61643555-61643574 | Msa0304340:intron | 25.0% |
| !!! | TACTTCACTTTTGGTATTTA+AGG | + | chr2_3:61643564-61643583 | Msa0304340:intron | 25.0% |
| ! | TGTAAGACATAGAAAATGTA+TGG | + | chr2_3:61643607-61643626 | Msa0304340:intron | 25.0% |
| !!! | GTTCTATAAATTAGGTTGAA+AGG | + | chr2_3:61643684-61643703 | Msa0304340:intron | 25.0% |
| !! | TAATGATTATACTGTTGCTT+TGG | - | chr2_3:61643909-61643928 | None:intergenic | 25.0% |
| !! | TTTACTATTTTGTAGATGTG+CGG | + | chr2_3:61643938-61643957 | Msa0304340:intron | 25.0% |
| !!! | ATAATGGAGCTTTTATTTAC+AGG | - | chr2_3:61644209-61644228 | None:intergenic | 25.0% |
| ! | TCACTCACAAAAATATAGAT+TGG | - | chr2_3:61644461-61644480 | None:intergenic | 25.0% |
| ! | GAAATTCTTTCCTTTATACT+GGG | + | chr2_3:61644498-61644517 | Msa0304340:intron | 25.0% |
| ! | AACATCACTTTATCAACAAA+AGG | - | chr2_3:61644536-61644555 | None:intergenic | 25.0% |
| ! | ATAAAGTGATGTTGATCTTA+TGG | + | chr2_3:61644543-61644562 | Msa0304340:intron | 25.0% |
| !! | ATAATTGCATTTTTCTGTCT+AGG | + | chr2_3:61644607-61644626 | Msa0304340:intron | 25.0% |
| ! | ACTGAAATTAGGAAGATTAA+GGG | + | chr2_3:61645080-61645099 | Msa0304340:intron | 25.0% |
| ! | TTACAGTAAAATGGATATCA+GGG | - | chr2_3:61645111-61645130 | None:intergenic | 25.0% |
| ! | TTTACAGTAAAATGGATATC+AGG | - | chr2_3:61645112-61645131 | None:intergenic | 25.0% |
| ! | CATTACTGTTTACAGTAAAA+TGG | - | chr2_3:61645120-61645139 | None:intergenic | 25.0% |
| ! | ATAGGCATTTCATATATACT+TGG | - | chr2_3:61645260-61645279 | None:intergenic | 25.0% |
| ! | TTAGTGTACTATGTTATCAT+AGG | - | chr2_3:61645278-61645297 | None:intergenic | 25.0% |
| ! | GCATTAGAAATATAATCATG+CGG | + | chr2_3:61645303-61645322 | Msa0304340:intron | 25.0% |
| ! | CATTAGAAATATAATCATGC+GGG | + | chr2_3:61645304-61645323 | Msa0304340:intron | 25.0% |
| ! | ATTAGAAATATAATCATGCG+GGG | + | chr2_3:61645305-61645324 | Msa0304340:intron | 25.0% |
| ! | ATTGTATAATGATTGTTCAC+AGG | + | chr2_3:61645446-61645465 | Msa0304340:intron | 25.0% |
| !!! | TGTTATTTTAAAACCCAAGA+TGG | - | chr2_3:61645515-61645534 | None:intergenic | 25.0% |
| ! | ATAAAATTTCATAGAGGATC+AGG | - | chr2_3:61646175-61646194 | None:intergenic | 25.0% |
| !!! | GTTAGTTCTGAATCTTAATT+AGG | - | chr2_3:61646230-61646249 | None:intergenic | 25.0% |
| ! | ATTAAGATTCAGAACTAACT+TGG | + | chr2_3:61646231-61646250 | Msa0304340:intron | 25.0% |
| !! | ACAGAAATCTCAAATTTGTT+GGG | - | chr2_3:61646333-61646352 | None:intergenic | 25.0% |
| !! | TTTCAAACTAGCAAATTTTG+CGG | - | chr2_3:61646761-61646780 | None:intergenic | 25.0% |
| ! | GACATTTTCGCGAAAAAAAT+TGG | - | chr2_3:61641622-61641641 | None:intergenic | 30.0% |
| AATTGGGATTATACTATACC+TGG | - | chr2_3:61641747-61641766 | None:intergenic | 30.0% | |
| !! | ATTTTTCAGCATTCGAAGAA+TGG | + | chr2_3:61641858-61641877 | Msa0304340:intron | 30.0% |
| !! | TTTTTCAGCATTCGAAGAAT+GGG | + | chr2_3:61641859-61641878 | Msa0304340:intron | 30.0% |
| ATTGAATGTAATTACACCTG+CGG | + | chr2_3:61642157-61642176 | Msa0304340:intron | 30.0% | |
| AACCATTGCATTAAACACAT+GGG | - | chr2_3:61642494-61642513 | None:intergenic | 30.0% | |
| AAACCATTGCATTAAACACA+TGG | - | chr2_3:61642495-61642514 | None:intergenic | 30.0% | |
| AGAACAGCAACTATCAAAAT+TGG | - | chr2_3:61642534-61642553 | None:intergenic | 30.0% | |
| ! | TTGCTGTTCTTAGTGATTTA+AGG | + | chr2_3:61642544-61642563 | Msa0304340:intron | 30.0% |
| GAAGACAATATCGAAACAAT+GGG | - | chr2_3:61642725-61642744 | None:intergenic | 30.0% | |
| AGAAGACAATATCGAAACAA+TGG | - | chr2_3:61642726-61642745 | None:intergenic | 30.0% | |
| !!! | TTGTTTTAGTTGTTTGTGCT+TGG | + | chr2_3:61642766-61642785 | Msa0304340:intron | 30.0% |
| TCATAAATGCCATACACATT+AGG | - | chr2_3:61642807-61642826 | None:intergenic | 30.0% | |
| TGTTAGCATAGATTTGAGAA+AGG | + | chr2_3:61642869-61642888 | Msa0304340:intron | 30.0% | |
| CTACGAACTGTATAACATAA+AGG | - | chr2_3:61642909-61642928 | None:intergenic | 30.0% | |
| !! | GTCAACAGTATTTTTGTGTA+TGG | + | chr2_3:61642937-61642956 | Msa0304340:intron | 30.0% |
| !!! | GATTTACTTTGGTTTTGGAT+AGG | - | chr2_3:61643175-61643194 | None:intergenic | 30.0% |
| AGTCTTCGTATAATTTCTCA+TGG | - | chr2_3:61643305-61643324 | None:intergenic | 30.0% | |
| GAAGTATAAATAGCAGATAC+AGG | - | chr2_3:61643550-61643569 | None:intergenic | 30.0% | |
| !! | TCACTTTTGGTATTTAAGGT+AGG | + | chr2_3:61643568-61643587 | Msa0304340:intron | 30.0% |
| GCTAGAGAGTTCTATAAATT+AGG | + | chr2_3:61643676-61643695 | Msa0304340:intron | 30.0% | |
| CAGTACTCACTATTCATATA+CGG | + | chr2_3:61643736-61643755 | Msa0304340:intron | 30.0% | |
| TACGGATTCTAAACTTCTAA+TGG | + | chr2_3:61643754-61643773 | Msa0304340:intron | 30.0% | |
| ! | TGCTTTGGATAAAATCAAAC+AGG | - | chr2_3:61643894-61643913 | None:intergenic | 30.0% |
| ATGTATCAACTTCTTGATTC+TGG | + | chr2_3:61643970-61643989 | Msa0304340:CDS | 30.0% | |
| TGTATCAACTTCTTGATTCT+GGG | + | chr2_3:61643971-61643990 | Msa0304340:CDS | 30.0% | |
| TTCTTGATTCTGGGTTTATT+GGG | + | chr2_3:61643980-61643999 | Msa0304340:CDS | 30.0% | |
| !! | TCTTGTTGTTAAATTGTCTG+AGG | - | chr2_3:61644255-61644274 | None:intergenic | 30.0% |
| GACAATTTAACAACAAGATC+TGG | + | chr2_3:61644257-61644276 | Msa0304340:CDS | 30.0% | |
| AACTGTTGTCTATTCTTCAT+GGG | - | chr2_3:61644382-61644401 | None:intergenic | 30.0% | |
| AAACTGTTGTCTATTCTTCA+TGG | - | chr2_3:61644383-61644402 | None:intergenic | 30.0% | |
| TTACATTTGAATGCAGAACA+TGG | + | chr2_3:61644415-61644434 | Msa0304340:intron | 30.0% | |
| AGTGAAGTTCTTAAAGATCA+GGG | + | chr2_3:61644476-61644495 | Msa0304340:intron | 30.0% | |
| GGAAATTCTTTCCTTTATAC+TGG | + | chr2_3:61644497-61644516 | Msa0304340:intron | 30.0% | |
| GCAATTATGATTATACTGGT+GGG | - | chr2_3:61644595-61644614 | None:intergenic | 30.0% | |
| TGCAATTATGATTATACTGG+TGG | - | chr2_3:61644596-61644615 | None:intergenic | 30.0% | |
| ! | AATTGTAATTTTTCCTAGGG+TGG | + | chr2_3:61644681-61644700 | Msa0304340:intron | 30.0% |
| ! | ATTGTAATTTTTCCTAGGGT+GGG | + | chr2_3:61644682-61644701 | Msa0304340:intron | 30.0% |
| ATACTTTCTGACATATCCAT+GGG | - | chr2_3:61644825-61644844 | None:intergenic | 30.0% | |
| TGTTTATCAACCGACAATTT+AGG | + | chr2_3:61644919-61644938 | Msa0304340:intron | 30.0% | |
| AAAAAACACGCCTAAATTGT+CGG | - | chr2_3:61644932-61644951 | None:intergenic | 30.0% | |
| TTCCTAATTTCAGTCTCTAA+TGG | - | chr2_3:61645074-61645093 | None:intergenic | 30.0% | |
| GACTGAAATTAGGAAGATTA+AGG | + | chr2_3:61645079-61645098 | Msa0304340:intron | 30.0% | |
| CTGAAATTAGGAAGATTAAG+GGG | + | chr2_3:61645081-61645100 | Msa0304340:intron | 30.0% | |
| TTAGAAATATAATCATGCGG+GGG | + | chr2_3:61645306-61645325 | Msa0304340:intron | 30.0% | |
| ! | ACCATGTCTAATCTTTTATG+AGG | + | chr2_3:61645472-61645491 | Msa0304340:intron | 30.0% |
| ACCTCATAAAAGATTAGACA+TGG | - | chr2_3:61645476-61645495 | None:intergenic | 30.0% | |
| !! | ATCAAGGTTGATAAAAGACA+AGG | - | chr2_3:61645600-61645619 | None:intergenic | 30.0% |
| ATGTACTATTTGAAGAGGAA+CGG | + | chr2_3:61645651-61645670 | Msa0304340:CDS | 30.0% | |
| AAGCCATCTTACAAAATACA+AGG | + | chr2_3:61645687-61645706 | Msa0304340:CDS | 30.0% | |
| AAAGTACAAACAAATGGCAT+AGG | - | chr2_3:61645824-61645843 | None:intergenic | 30.0% | |
| CCATTTGTTTGTACTTTGTA+GGG | + | chr2_3:61645827-61645846 | Msa0304340:intron | 30.0% | |
| GACTAAGAGAGAATGAAATT+CGG | + | chr2_3:61646053-61646072 | Msa0304340:CDS | 30.0% | |
| ACTAAGAGAGAATGAAATTC+GGG | + | chr2_3:61646054-61646073 | Msa0304340:CDS | 30.0% | |
| ! | AATAACTTGTGAGCATGTTT+AGG | - | chr2_3:61646304-61646323 | None:intergenic | 30.0% |
| GACAGAAATCTCAAATTTGT+TGG | - | chr2_3:61646334-61646353 | None:intergenic | 30.0% | |
| TAACAATGTTGAATTCTCGT+TGG | + | chr2_3:61646646-61646665 | Msa0304340:exon | 30.0% | |
| ACATAGAATGTACATGATAG+CGG | + | chr2_3:61646725-61646744 | Msa0304340:three_prime_UTR | 30.0% | |
| !!! | CAGTGAAATATTTTGGTTGT+TGG | + | chr2_3:61646789-61646808 | Msa0304340:three_prime_UTR | 30.0% |
| TTGTTCCTCCAAGAATAAAA+TGG | - | chr2_3:61646853-61646872 | None:intergenic | 30.0% | |
| AGTTATCTCAATGACATTCA+TGG | + | chr2_3:61646878-61646897 | Msa0304340:three_prime_UTR | 30.0% | |
| TGAAAATGTCCGAAGAAGTT+TGG | + | chr2_3:61641653-61641672 | Msa0304340:CDS | 35.0% | |
| GCATGTTAACCAAACTTCTT+CGG | - | chr2_3:61641665-61641684 | None:intergenic | 35.0% | |
| ACTGAAACCGAAGAGATTAT+GGG | + | chr2_3:61641703-61641722 | Msa0304340:CDS | 35.0% | |
| AAGAAGACCCATAATCTCTT+CGG | - | chr2_3:61641713-61641732 | None:intergenic | 35.0% | |
| TGAAACTAATCCTGAACAGT+TGG | + | chr2_3:61641947-61641966 | Msa0304340:CDS | 35.0% | |
| TGCTTCATAAGTGATATGTG+AGG | - | chr2_3:61642078-61642097 | None:intergenic | 35.0% | |
| GAGAGCTTATGAAAATAAGC+TGG | + | chr2_3:61642387-61642406 | Msa0304340:intron | 35.0% | |
| ! | GCTTATTTGAGTTTACCTAC+CGG | - | chr2_3:61642458-61642477 | None:intergenic | 35.0% |
| TCAAATAAGCCAATCCAAAC+AGG | + | chr2_3:61642468-61642487 | Msa0304340:intron | 35.0% | |
| CATTCTGTGCTATGAAGTTA+AGG | - | chr2_3:61642595-61642614 | None:intergenic | 35.0% | |
| CAGTAATATGAGGATGTGAA+TGG | - | chr2_3:61642659-61642678 | None:intergenic | 35.0% | |
| AATATCGAAACAATGGGAGA+CGG | - | chr2_3:61642719-61642738 | None:intergenic | 35.0% | |
| TTAGTTGTTTGTGCTTGGAT+TGG | + | chr2_3:61642771-61642790 | Msa0304340:intron | 35.0% | |
| GAACTGAATCCTAATGTGTA+TGG | + | chr2_3:61642795-61642814 | Msa0304340:intron | 35.0% | |
| CCTTCAATTGATGTTGAAGT+TGG | - | chr2_3:61642996-61643015 | None:intergenic | 35.0% | |
| CCAACTTCAACATCAATTGA+AGG | + | chr2_3:61642993-61643012 | Msa0304340:intron | 35.0% | |
| AATCAAATATGTTGCTGGAG+AGG | + | chr2_3:61643040-61643059 | Msa0304340:intron | 35.0% | |
| TTCAATGTATTCAAGCATCC+AGG | + | chr2_3:61643130-61643149 | Msa0304340:intron | 35.0% | |
| !!! | TTTGGATAGGGTTTTAGAGT+GGG | - | chr2_3:61643162-61643181 | None:intergenic | 35.0% |
| !!! | TTTTGGATAGGGTTTTAGAG+TGG | - | chr2_3:61643163-61643182 | None:intergenic | 35.0% |
| !! | CGACAGATTTACTTTGGTTT+TGG | - | chr2_3:61643180-61643199 | None:intergenic | 35.0% |
| TCTAACTAACTCACAGACAA+AGG | + | chr2_3:61643242-61643261 | Msa0304340:intron | 35.0% | |
| CTAACTAACTCACAGACAAA+GGG | + | chr2_3:61643243-61643262 | Msa0304340:intron | 35.0% | |
| TAACTAACTCACAGACAAAG+GGG | + | chr2_3:61643244-61643263 | Msa0304340:intron | 35.0% | |
| ATTTGCATCAGCCAAATGAT+AGG | - | chr2_3:61643274-61643293 | None:intergenic | 35.0% | |
| GGGTATTATTCAGTGATTTG+TGG | - | chr2_3:61643453-61643472 | None:intergenic | 35.0% | |
| AAAGGTTACAGTAGAATGCA+GGG | - | chr2_3:61643473-61643492 | None:intergenic | 35.0% | |
| TCTACTGTAACCTTTCTGAA+TGG | + | chr2_3:61643478-61643497 | Msa0304340:intron | 35.0% | |
| !! | TCAAGTTGAACCATTCAGAA+AGG | - | chr2_3:61643491-61643510 | None:intergenic | 35.0% |
| ATAACTGTACATGCCATGTA+GGG | - | chr2_3:61643521-61643540 | None:intergenic | 35.0% | |
| !! | ATCACAAACTTTTGAGGAAG+AGG | - | chr2_3:61643785-61643804 | None:intergenic | 35.0% |
| TTCCTCAAAAGTTTGTGATC+TGG | + | chr2_3:61643786-61643805 | Msa0304340:intron | 35.0% | |
| ! | AACCAGATCACAAACTTTTG+AGG | - | chr2_3:61643791-61643810 | None:intergenic | 35.0% |
| CTTCTTGATTCTGGGTTTAT+TGG | + | chr2_3:61643979-61643998 | Msa0304340:CDS | 35.0% | |
| TTACAACGAAGATGCAAACA+AGG | + | chr2_3:61644017-61644036 | Msa0304340:CDS | 35.0% | |
| ! | GCTTTGAACTGTATTCAGAT+AGG | + | chr2_3:61644110-61644129 | Msa0304340:intron | 35.0% |
| !! | CTTTTATTTACAGGAGACAG+AGG | - | chr2_3:61644200-61644219 | None:intergenic | 35.0% |
| GTTAAATTGTCTGAGGAACT+TGG | - | chr2_3:61644248-61644267 | None:intergenic | 35.0% | |
| AACAAGATCTGGTTACTTCA+AGG | + | chr2_3:61644268-61644287 | Msa0304340:CDS | 35.0% | |
| ACAAGATCTGGTTACTTCAA+GGG | + | chr2_3:61644269-61644288 | Msa0304340:CDS | 35.0% | |
| ACTGTTGTCTATTCTTCATG+GGG | - | chr2_3:61644381-61644400 | None:intergenic | 35.0% | |
| ATTTGAATGCAGAACATGGT+GGG | + | chr2_3:61644419-61644438 | Msa0304340:intron | 35.0% | |
| GAGTGAAGTTCTTAAAGATC+AGG | + | chr2_3:61644475-61644494 | Msa0304340:intron | 35.0% | |
| GCATACAAAACCCAGTATAA+AGG | - | chr2_3:61644511-61644530 | None:intergenic | 35.0% | |
| GATCTTATGGAAATGTGTTC+AGG | + | chr2_3:61644556-61644575 | Msa0304340:intron | 35.0% | |
| ! | TTGTAATTTTTCCTAGGGTG+GGG | + | chr2_3:61644683-61644702 | Msa0304340:intron | 35.0% |
| CATACTTTCTGACATATCCA+TGG | - | chr2_3:61644826-61644845 | None:intergenic | 35.0% | |
| !!! | GACAATTTAGGCGTGTTTTT+TGG | + | chr2_3:61644931-61644950 | Msa0304340:intron | 35.0% |
| !!! | TTAGGCGTGTTTTTTGGATT+TGG | + | chr2_3:61644937-61644956 | Msa0304340:intron | 35.0% |
| TAGTATATAAAGCTCAACCC+AGG | + | chr2_3:61645008-61645027 | Msa0304340:intron | 35.0% | |
| TGCCATTAGAGACTGAAATT+AGG | + | chr2_3:61645069-61645088 | Msa0304340:intron | 35.0% | |
| AAATTAGGAAGATTAAGGGG+AGG | + | chr2_3:61645084-61645103 | Msa0304340:intron | 35.0% | |
| AATTAGGAAGATTAAGGGGA+GGG | + | chr2_3:61645085-61645104 | Msa0304340:intron | 35.0% | |
| AAGGAAAGCTTCATAAGCAA+AGG | - | chr2_3:61645217-61645236 | None:intergenic | 35.0% | |
| TTTGCTTATGAAGCTTTCCT+TGG | + | chr2_3:61645216-61645235 | Msa0304340:intron | 35.0% | |
| ! | ATATATACTTGGTGGAACAG+TGG | - | chr2_3:61645249-61645268 | None:intergenic | 35.0% |
| GGCATTTCATATATACTTGG+TGG | - | chr2_3:61645257-61645276 | None:intergenic | 35.0% | |
| TAGAAATATAATCATGCGGG+GGG | + | chr2_3:61645307-61645326 | Msa0304340:intron | 35.0% | |
| ACAAGATAGTTTCTCCATCT+TGG | + | chr2_3:61645498-61645517 | Msa0304340:intron | 35.0% | |
| CAAGATAGTTTCTCCATCTT+GGG | + | chr2_3:61645499-61645518 | Msa0304340:intron | 35.0% | |
| TGGTGCAGAGTATATTAGAA+AGG | + | chr2_3:61645550-61645569 | Msa0304340:CDS | 35.0% | |
| !! | AGGTTGATAAAAGACAAGGA+TGG | - | chr2_3:61645596-61645615 | None:intergenic | 35.0% |
| AGATCCTTGTATGATGATAG+CGG | - | chr2_3:61645626-61645645 | None:intergenic | 35.0% | |
| GCAACATGTACTATTTGAAG+AGG | + | chr2_3:61645646-61645665 | Msa0304340:CDS | 35.0% | |
| ! | CCACCTTGTATTTTGTAAGA+TGG | - | chr2_3:61645693-61645712 | None:intergenic | 35.0% |
| CCATCTTACAAAATACAAGG+TGG | + | chr2_3:61645690-61645709 | Msa0304340:intron | 35.0% | |
| GCCATTTGTTTGTACTTTGT+AGG | + | chr2_3:61645826-61645845 | Msa0304340:intron | 35.0% | |
| CCCTACAAAGTACAAACAAA+TGG | - | chr2_3:61645830-61645849 | None:intergenic | 35.0% | |
| TTGTTTGTACTTTGTAGGGA+TGG | + | chr2_3:61645831-61645850 | Msa0304340:intron | 35.0% | |
| TGTTTGTACTTTGTAGGGAT+GGG | + | chr2_3:61645832-61645851 | Msa0304340:intron | 35.0% | |
| ATACTCAATCAACTTGCACA+AGG | - | chr2_3:61645907-61645926 | None:intergenic | 35.0% | |
| !! | TGTGCAAGTTGATTGAGTAT+TGG | + | chr2_3:61645907-61645926 | Msa0304340:CDS | 35.0% |
| CTCTTAAGATACTGACAACA+TGG | - | chr2_3:61646125-61646144 | None:intergenic | 35.0% | |
| CATGTTGTCAGTATCTTAAG+AGG | + | chr2_3:61646123-61646142 | Msa0304340:intron | 35.0% | |
| TTGTCAGTATCTTAAGAGGT+TGG | + | chr2_3:61646127-61646146 | Msa0304340:intron | 35.0% | |
| ACATAGGACATGATAGAAGA+GGG | - | chr2_3:61646259-61646278 | None:intergenic | 35.0% | |
| TACATAGGACATGATAGAAG+AGG | - | chr2_3:61646260-61646279 | None:intergenic | 35.0% | |
| ! | ATTGTTATCCTTTTCTGCTC+CGG | - | chr2_3:61646633-61646652 | None:intergenic | 35.0% |
| ! | CGATGCTCAGTGAAATATTT+TGG | + | chr2_3:61646782-61646801 | Msa0304340:three_prime_UTR | 35.0% |
| !! | TGACTTGGCCATTTTATTCT+TGG | + | chr2_3:61646842-61646861 | Msa0304340:three_prime_UTR | 35.0% |
| ATCTCAATGACATTCATGGT+TGG | + | chr2_3:61646882-61646901 | Msa0304340:three_prime_UTR | 35.0% | |
| ! | TGTTTCTGACTAGACAGTTG+AGG | + | chr2_3:61641498-61641517 | Msa0304340:five_prime_UTR | 40.0% |
| TAGACAGTTGAGGTTGAAGA+AGG | + | chr2_3:61641508-61641527 | Msa0304340:five_prime_UTR | 40.0% | |
| CATAATCTCTTCGGTTTCAG+TGG | - | chr2_3:61641704-61641723 | None:intergenic | 40.0% | |
| CACTGAAACCGAAGAGATTA+TGG | + | chr2_3:61641702-61641721 | Msa0304340:CDS | 40.0% | |
| GAGATTATGGGTCTTCTTCT+TGG | + | chr2_3:61641715-61641734 | Msa0304340:CDS | 40.0% | |
| ! | GAGTGTGACTGCATTGATAT+GGG | + | chr2_3:61641881-61641900 | Msa0304340:CDS | 40.0% |
| ! | AGTGTGACTGCATTGATATG+GGG | + | chr2_3:61641882-61641901 | Msa0304340:CDS | 40.0% |
| TCACTTATGAAGCAGAGACA+CGG | + | chr2_3:61642084-61642103 | Msa0304340:intron | 40.0% | |
| TTCTGCAGAGCATATCACTT+AGG | + | chr2_3:61642227-61642246 | Msa0304340:intron | 40.0% | |
| ATTAAACACATGGGCCTGTT+TGG | - | chr2_3:61642485-61642504 | None:intergenic | 40.0% | |
| CACAGAATGACTGTTACAAC+TGG | + | chr2_3:61642606-61642625 | Msa0304340:CDS | 40.0% | |
| TTACAACTGGAAGAACAACG+AGG | + | chr2_3:61642619-61642638 | Msa0304340:CDS | 40.0% | |
| TACAACTGGAAGAACAACGA+GGG | + | chr2_3:61642620-61642639 | Msa0304340:CDS | 40.0% | |
| AAGTACATACCGACATGTGA+AGG | - | chr2_3:61642687-61642706 | None:intergenic | 40.0% | |
| CACATGTCGGTATGTACTTT+CGG | + | chr2_3:61642688-61642707 | Msa0304340:intron | 40.0% | |
| ACATGTCGGTATGTACTTTC+GGG | + | chr2_3:61642689-61642708 | Msa0304340:intron | 40.0% | |
| ATATCGAAACAATGGGAGAC+GGG | - | chr2_3:61642718-61642737 | None:intergenic | 40.0% | |
| !!! | TTTTAGAGTGGGAGATAACC+TGG | - | chr2_3:61643151-61643170 | None:intergenic | 40.0% |
| AACTAACTCACAGACAAAGG+GGG | + | chr2_3:61643245-61643264 | Msa0304340:intron | 40.0% | |
| AAAGGGGGTTTCCTATCATT+TGG | + | chr2_3:61643260-61643279 | Msa0304340:intron | 40.0% | |
| GAAAGGTTACAGTAGAATGC+AGG | - | chr2_3:61643474-61643493 | None:intergenic | 40.0% | |
| GATAACTGTACATGCCATGT+AGG | - | chr2_3:61643522-61643541 | None:intergenic | 40.0% | |
| !! | AGGTTGAAAGGCTTTTTAGC+AGG | + | chr2_3:61643696-61643715 | Msa0304340:intron | 40.0% |
| !! | TGCTTGTTATCACGTTGGAT+AGG | + | chr2_3:61643828-61643847 | Msa0304340:intron | 40.0% |
| AACGAAGATGCAAACAAGGT+TGG | + | chr2_3:61644021-61644040 | Msa0304340:intron | 40.0% | |
| ATTGCTTTCCAGTCATCTGA+TGG | + | chr2_3:61644146-61644165 | Msa0304340:CDS | 40.0% | |
| ! | TTTACAGGAGACAGAGGTAT+GGG | - | chr2_3:61644194-61644213 | None:intergenic | 40.0% |
| ATTTACAGGAGACAGAGGTA+TGG | - | chr2_3:61644195-61644214 | None:intergenic | 40.0% | |
| CATTTGAATGCAGAACATGG+TGG | + | chr2_3:61644418-61644437 | Msa0304340:intron | 40.0% | |
| ! | TGTAATTTTTCCTAGGGTGG+GGG | + | chr2_3:61644684-61644703 | Msa0304340:intron | 40.0% |
| ! | TTTTACGCTCCCTAGATAGT+TGG | - | chr2_3:61644751-61644770 | None:intergenic | 40.0% |
| ! | TATCTAGGGAGCGTAAAAGA+TGG | + | chr2_3:61644753-61644772 | Msa0304340:CDS | 40.0% |
| ! | GGATATGTCAGAAAGTATGC+AGG | + | chr2_3:61644827-61644846 | Msa0304340:CDS | 40.0% |
| ACCTCATGTCCATATTTGAG+CGG | - | chr2_3:61644863-61644882 | None:intergenic | 40.0% | |
| TGACCTGGTGATAAATGTCT+GGG | + | chr2_3:61645031-61645050 | Msa0304340:intron | 40.0% | |
| !! | TCATACTGAGGAGCATTCTA+GGG | - | chr2_3:61645186-61645205 | None:intergenic | 40.0% |
| !! | ATCATACTGAGGAGCATTCT+AGG | - | chr2_3:61645187-61645206 | None:intergenic | 40.0% |
| ! | TAACACATATTTGGTGGCAG+TGG | + | chr2_3:61645530-61645549 | Msa0304340:intron | 40.0% |
| ! | CTACATCTAAAGCGCTACAT+AGG | - | chr2_3:61646275-61646294 | None:intergenic | 40.0% |
| GATGAACTTCCTCGATGTAT+GGG | - | chr2_3:61646541-61646560 | None:intergenic | 40.0% | |
| AGATGAACTTCCTCGATGTA+TGG | - | chr2_3:61646542-61646561 | None:intergenic | 40.0% | |
| CAGAGTTCAAGTGAATCTCT+TGG | + | chr2_3:61646580-61646599 | Msa0304340:CDS | 40.0% | |
| ! | CAAACTAGCAAATTTTGCGG+AGG | - | chr2_3:61646758-61646777 | None:intergenic | 40.0% |
| TACCTGTGTACAATTGTGAG+TGG | + | chr2_3:61646819-61646838 | Msa0304340:three_prime_UTR | 40.0% | |
| TACAATTGTGAGTGGTGACT+TGG | + | chr2_3:61646827-61646846 | Msa0304340:three_prime_UTR | 40.0% | |
| !! | CTTGGCCATTTTATTCTTGG+AGG | + | chr2_3:61646845-61646864 | Msa0304340:three_prime_UTR | 40.0% |
| ACAGTTGAGGTTGAAGAAGG+AGG | + | chr2_3:61641511-61641530 | Msa0304340:five_prime_UTR | 45.0% | |
| TCTTCTTCTTGGCGATATCC+AGG | + | chr2_3:61641726-61641745 | Msa0304340:CDS | 45.0% | |
| ! | GGAGTGTGACTGCATTGATA+TGG | + | chr2_3:61641880-61641899 | Msa0304340:CDS | 45.0% |
| CACTTATGAAGCAGAGACAC+GGG | + | chr2_3:61642085-61642104 | Msa0304340:intron | 45.0% | |
| ACTTATGAAGCAGAGACACG+GGG | + | chr2_3:61642086-61642105 | Msa0304340:intron | 45.0% | |
| TGGCATGTTGACACAAGTAG+TGG | + | chr2_3:61642117-61642136 | Msa0304340:intron | 45.0% | |
| CATATCACTTAGGCCCTGTT+TGG | + | chr2_3:61642237-61642256 | Msa0304340:intron | 45.0% | |
| GTTCTCACAACTGCTTAAGC+CGG | + | chr2_3:61642436-61642455 | Msa0304340:intron | 45.0% | |
| GGCCCATGTGTTTAATGCAA+TGG | + | chr2_3:61642489-61642508 | Msa0304340:intron | 45.0% | |
| GAAGGCAGGACAGTAATATG+AGG | - | chr2_3:61642669-61642688 | None:intergenic | 45.0% | |
| CGTGCTCGACAGATTTACTT+TGG | - | chr2_3:61643186-61643205 | None:intergenic | 45.0% | |
| !! | GATTTGTGGAGAAGTGTCTG+AGG | - | chr2_3:61643439-61643458 | None:intergenic | 45.0% |
| !! | CAGCATGCTTGTTATCACGT+TGG | + | chr2_3:61643823-61643842 | Msa0304340:intron | 45.0% |
| ! | TTTTGTAGATGTGCGGACTC+AGG | + | chr2_3:61643945-61643964 | Msa0304340:intron | 45.0% |
| TCTGCTTTCCATCAGATGAC+TGG | - | chr2_3:61644157-61644176 | None:intergenic | 45.0% | |
| GAAATGTGTTCAGGCCCTAA+AGG | + | chr2_3:61644565-61644584 | Msa0304340:intron | 45.0% | |
| TACTGGTGGGACATCCTTTA+GGG | - | chr2_3:61644582-61644601 | None:intergenic | 45.0% | |
| ATACTGGTGGGACATCCTTT+AGG | - | chr2_3:61644583-61644602 | None:intergenic | 45.0% | |
| ! | GTAATTTTTCCTAGGGTGGG+GGG | + | chr2_3:61644685-61644704 | Msa0304340:intron | 45.0% |
| !! | TAGATAGTTGGCATCGGCAT+TGG | - | chr2_3:61644739-61644758 | None:intergenic | 45.0% |
| AATGCCGATGCCAACTATCT+AGG | + | chr2_3:61644738-61644757 | Msa0304340:CDS | 45.0% | |
| ATGCCGATGCCAACTATCTA+GGG | + | chr2_3:61644739-61644758 | Msa0304340:CDS | 45.0% | |
| !! | CATTGCAGTTGATGATCCCA+TGG | + | chr2_3:61644806-61644825 | Msa0304340:CDS | 45.0% |
| AGCTATGCACCGCTCAAATA+TGG | + | chr2_3:61644851-61644870 | Msa0304340:CDS | 45.0% | |
| ACCGCTCAAATATGGACATG+AGG | + | chr2_3:61644859-61644878 | Msa0304340:CDS | 45.0% | |
| ATCTTGTCCCCTTGCACAAA+AGG | + | chr2_3:61644964-61644983 | Msa0304340:intron | 45.0% | |
| TCTTGTCCCCTTGCACAAAA+GGG | + | chr2_3:61644965-61644984 | Msa0304340:intron | 45.0% | |
| CATTTATCACCAGGTCACCT+GGG | - | chr2_3:61645028-61645047 | None:intergenic | 45.0% | |
| ACATTTATCACCAGGTCACC+TGG | - | chr2_3:61645029-61645048 | None:intergenic | 45.0% | |
| GTGACCTGGTGATAAATGTC+TGG | + | chr2_3:61645030-61645049 | Msa0304340:intron | 45.0% | |
| CTACCCAGACATTTATCACC+AGG | - | chr2_3:61645037-61645056 | None:intergenic | 45.0% | |
| AAGGCAGCAGAATCATACTG+AGG | - | chr2_3:61645198-61645217 | None:intergenic | 45.0% | |
| AATATAATCATGCGGGGGGA+AGG | + | chr2_3:61645311-61645330 | Msa0304340:intron | 45.0% | |
| !! | ATGATGATAGCGGCGAATCA+AGG | - | chr2_3:61645616-61645635 | None:intergenic | 45.0% |
| TTCGCCGCTATCATCATACA+AGG | + | chr2_3:61645619-61645638 | Msa0304340:CDS | 45.0% | |
| ACACCACACTTCGACTTATC+AGG | + | chr2_3:61645878-61645897 | Msa0304340:CDS | 45.0% | |
| AAGCCTGATAAGTCGAAGTG+TGG | - | chr2_3:61645884-61645903 | None:intergenic | 45.0% | |
| !! | TCTTGAAGTGCGTTGATTGC+AGG | - | chr2_3:61646031-61646050 | None:intergenic | 45.0% |
| ! | TAAACTTGCTTCACTCCCTC+TGG | - | chr2_3:61646476-61646495 | None:intergenic | 45.0% |
| AGAGGGAGTGAAGCAAGTTT+AGG | + | chr2_3:61646475-61646494 | Msa0304340:CDS | 45.0% | |
| TATGGGAGATGCAACTTGAC+GGG | - | chr2_3:61646524-61646543 | None:intergenic | 45.0% | |
| GTATGGGAGATGCAACTTGA+CGG | - | chr2_3:61646525-61646544 | None:intergenic | 45.0% | |
| ! | TCAAAGAGTGTAGCTAGTCC+TGG | + | chr2_3:61646604-61646623 | Msa0304340:CDS | 45.0% |
| CACCACTCACAATTGTACAC+AGG | - | chr2_3:61646824-61646843 | None:intergenic | 45.0% | |
| !! | AAAAAAATAAAGAAAAAATT+GGG | - | chr2_3:61641763-61641782 | None:intergenic | 5.0% |
| ! | CGTCGATCAGACCTTGTTTG+AGG | - | chr2_3:61641915-61641934 | None:intergenic | 50.0% |
| TCACAACTGCTTAAGCCGGT+AGG | + | chr2_3:61642440-61642459 | Msa0304340:intron | 50.0% | |
| ACACATGGGCCTGTTTGGAT+TGG | - | chr2_3:61642480-61642499 | None:intergenic | 50.0% | |
| GGAAGAACAACGAGGGTGAT+AGG | + | chr2_3:61642627-61642646 | Msa0304340:CDS | 50.0% | |
| ACTGTCCTGCCTTCACATGT+CGG | + | chr2_3:61642675-61642694 | Msa0304340:CDS | 50.0% | |
| ACATACCGACATGTGAAGGC+AGG | - | chr2_3:61642683-61642702 | None:intergenic | 50.0% | |
| ACTTGAGCACATGCCCTACA+TGG | + | chr2_3:61643505-61643524 | Msa0304340:intron | 50.0% | |
| AATCACCAGTGTCCTGCTCT+GGG | - | chr2_3:61644301-61644320 | None:intergenic | 50.0% | |
| ! | ACTGGTGATTCGAGAAGTGC+TGG | + | chr2_3:61644311-61644330 | Msa0304340:CDS | 50.0% |
| !! | GAGAAGTGCTGGTGCTAGTA+AGG | + | chr2_3:61644322-61644341 | Msa0304340:CDS | 50.0% |
| TGGGGGGAGATCTTCAGAAT+TGG | + | chr2_3:61644701-61644720 | Msa0304340:CDS | 50.0% | |
| GGGGGGAGATCTTCAGAATT+GGG | + | chr2_3:61644702-61644721 | Msa0304340:CDS | 50.0% | |
| GGGGGAGATCTTCAGAATTG+GGG | + | chr2_3:61644703-61644722 | Msa0304340:CDS | 50.0% | |
| GCTCCCTAGATAGTTGGCAT+CGG | - | chr2_3:61644745-61644764 | None:intergenic | 50.0% | |
| ! | TGTGCTCCCTTTTGTGCAAG+GGG | - | chr2_3:61644974-61644993 | None:intergenic | 50.0% |
| ! | CTGTGCTCCCTTTTGTGCAA+GGG | - | chr2_3:61644975-61644994 | None:intergenic | 50.0% |
| ! | ACTGTGCTCCCTTTTGTGCA+AGG | - | chr2_3:61644976-61644995 | None:intergenic | 50.0% |
| ! | TTGCACAAAAGGGAGCACAG+TGG | + | chr2_3:61644975-61644994 | Msa0304340:intron | 50.0% |
| AAGGATGGCAGCACATGAAG+GGG | - | chr2_3:61645581-61645600 | None:intergenic | 50.0% | |
| CAAGGATGGCAGCACATGAA+GGG | - | chr2_3:61645582-61645601 | None:intergenic | 50.0% | |
| ACAAGGATGGCAGCACATGA+AGG | - | chr2_3:61645583-61645602 | None:intergenic | 50.0% | |
| GTGTGGTGTATGAAAGCGAG+TGG | - | chr2_3:61645867-61645886 | None:intergenic | 50.0% | |
| GAGTGAAGAAGCCAAGAGTC+TGG | + | chr2_3:61646432-61646451 | Msa0304340:CDS | 50.0% | |
| TGAAGAAGCCAAGAGTCTGG+AGG | + | chr2_3:61646435-61646454 | Msa0304340:CDS | 50.0% | |
| ATGGGAGATGCAACTTGACG+GGG | - | chr2_3:61646523-61646542 | None:intergenic | 50.0% | |
| GTTGCATCTCCCATACATCG+AGG | + | chr2_3:61646529-61646548 | Msa0304340:CDS | 50.0% | |
| CTCTGCGAGTTTCTTTGACG+AGG | - | chr2_3:61646565-61646584 | None:intergenic | 50.0% | |
| AGGTTGAAGAAGGAGGCGAG+AGG | + | chr2_3:61641518-61641537 | Msa0304340:five_prime_UTR | 55.0% | |
| GGTTGAAGAAGGAGGCGAGA+GGG | + | chr2_3:61641519-61641538 | Msa0304340:five_prime_UTR | 55.0% | |
| GGGGTGCATCTCCTCAAACA+AGG | + | chr2_3:61641901-61641920 | Msa0304340:CDS | 55.0% | |
| GAAGCAGCAGCCAACTGTTC+AGG | - | chr2_3:61641960-61641979 | None:intergenic | 55.0% | |
| CAACACGTGTCTAACACCGC+AGG | - | chr2_3:61642176-61642195 | None:intergenic | 55.0% | |
| ! | CTGCGGTGTTAGACACGTGT+TGG | + | chr2_3:61642174-61642193 | Msa0304340:intron | 55.0% |
| GAACAACGAGGGTGATAGGC+TGG | + | chr2_3:61642631-61642650 | Msa0304340:CDS | 55.0% | |
| GAATCACCAGTGTCCTGCTC+TGG | - | chr2_3:61644302-61644321 | None:intergenic | 55.0% | |
| AAAGCTCAACCCAGGTGACC+TGG | + | chr2_3:61645016-61645035 | Msa0304340:intron | 55.0% | |
| GGAACAGTGGAACTGTGCCA+AGG | - | chr2_3:61645236-61645255 | None:intergenic | 55.0% | |
| AGAAGCCAAGAGTCTGGAGG+CGG | + | chr2_3:61646438-61646457 | Msa0304340:CDS | 55.0% | |
| ACGGGGAGAAGCAACTAGAC+GGG | - | chr2_3:61646506-61646525 | None:intergenic | 55.0% | |
| GACGGGGAGAAGCAACTAGA+CGG | - | chr2_3:61646507-61646526 | None:intergenic | 55.0% | |
| GTGTAGCTAGTCCTGGTAGC+CGG | + | chr2_3:61646611-61646630 | Msa0304340:CDS | 55.0% | |
| CAAGGGAGATAGCCCAGAGC+AGG | + | chr2_3:61644286-61644305 | Msa0304340:CDS | 60.0% | |
| GATAGCCCAGAGCAGGACAC+TGG | + | chr2_3:61644293-61644312 | Msa0304340:CDS | 60.0% | |
| TGAAGATCTCCCCCCACCCT+AGG | - | chr2_3:61644697-61644716 | None:intergenic | 60.0% | |
| !! | TGCGGGGGGAAGGTATTGTG+TGG | + | chr2_3:61645321-61645340 | Msa0304340:intron | 60.0% |
| !! | CGGAGGCATCTACGTCCAGA+GGG | + | chr2_3:61646458-61646477 | Msa0304340:CDS | 60.0% |
| CGGGGAGAAGCAACTAGACG+GGG | - | chr2_3:61646505-61646524 | None:intergenic | 60.0% | |
| ! | CCTTTTCTGCTCCGGCTACC+AGG | - | chr2_3:61646625-61646644 | None:intergenic | 60.0% |
| CCTGGTAGCCGGAGCAGAAA+AGG | + | chr2_3:61646622-61646641 | Msa0304340:CDS | 60.0% | |
| AGAGACACGGGGCACGACAC+TGG | + | chr2_3:61642097-61642116 | Msa0304340:intron | 65.0% | |
| AGCCAAGAGTCTGGAGGCGG+AGG | + | chr2_3:61646441-61646460 | Msa0304340:CDS | 65.0% | |
| TGCCTCCGCCTCCAGACTCT+TGG | - | chr2_3:61646446-61646465 | None:intergenic | 65.0% | |
| !! | GCGGAGGCATCTACGTCCAG+AGG | + | chr2_3:61646457-61646476 | Msa0304340:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 61641395 | 61646942 | 61641395 | ID=Msa0304340;Name=Msa0304340 |
| chr2_3 | mRNA | 61641395 | 61646942 | 61641395 | ID=Msa0304340-mRNA-1;Parent=Msa0304340;Name=Msa0304340-mRNA-1;_AED=0.14;_eAED=0.14;_QI=242|0.88|0.8|1|1|1|10|294|451 |
| chr2_3 | exon | 61641395 | 61641747 | 61641395 | ID=Msa0304340-mRNA-1:exon:20432;Parent=Msa0304340-mRNA-1 |
| chr2_3 | exon | 61641867 | 61642013 | 61641867 | ID=Msa0304340-mRNA-1:exon:20433;Parent=Msa0304340-mRNA-1 |
| chr2_3 | exon | 61642606 | 61642696 | 61642606 | ID=Msa0304340-mRNA-1:exon:20434;Parent=Msa0304340-mRNA-1 |
| chr2_3 | exon | 61643953 | 61644038 | 61643953 | ID=Msa0304340-mRNA-1:exon:20435;Parent=Msa0304340-mRNA-1 |
| chr2_3 | exon | 61644128 | 61644343 | 61644128 | ID=Msa0304340-mRNA-1:exon:20436;Parent=Msa0304340-mRNA-1 |
| chr2_3 | exon | 61644699 | 61644880 | 61644699 | ID=Msa0304340-mRNA-1:exon:20437;Parent=Msa0304340-mRNA-1 |
| chr2_3 | exon | 61645550 | 61645708 | 61645550 | ID=Msa0304340-mRNA-1:exon:20438;Parent=Msa0304340-mRNA-1 |
| chr2_3 | exon | 61645848 | 61645928 | 61645848 | ID=Msa0304340-mRNA-1:exon:20439;Parent=Msa0304340-mRNA-1 |
| chr2_3 | exon | 61646021 | 61646075 | 61646021 | ID=Msa0304340-mRNA-1:exon:20440;Parent=Msa0304340-mRNA-1 |
| chr2_3 | exon | 61646421 | 61646942 | 61646421 | ID=Msa0304340-mRNA-1:exon:20441;Parent=Msa0304340-mRNA-1 |
| chr2_3 | five_prime_UTR | 61641395 | 61641636 | 61641395 | ID=Msa0304340-mRNA-1:five_prime_utr;Parent=Msa0304340-mRNA-1 |
| chr2_3 | CDS | 61641637 | 61641747 | 61641637 | ID=Msa0304340-mRNA-1:cds;Parent=Msa0304340-mRNA-1 |
| chr2_3 | CDS | 61641867 | 61642013 | 61641867 | ID=Msa0304340-mRNA-1:cds;Parent=Msa0304340-mRNA-1 |
| chr2_3 | CDS | 61642606 | 61642696 | 61642606 | ID=Msa0304340-mRNA-1:cds;Parent=Msa0304340-mRNA-1 |
| chr2_3 | CDS | 61643953 | 61644038 | 61643953 | ID=Msa0304340-mRNA-1:cds;Parent=Msa0304340-mRNA-1 |
| chr2_3 | CDS | 61644128 | 61644343 | 61644128 | ID=Msa0304340-mRNA-1:cds;Parent=Msa0304340-mRNA-1 |
| chr2_3 | CDS | 61644699 | 61644880 | 61644699 | ID=Msa0304340-mRNA-1:cds;Parent=Msa0304340-mRNA-1 |
| chr2_3 | CDS | 61645550 | 61645708 | 61645550 | ID=Msa0304340-mRNA-1:cds;Parent=Msa0304340-mRNA-1 |
| chr2_3 | CDS | 61645848 | 61645928 | 61645848 | ID=Msa0304340-mRNA-1:cds;Parent=Msa0304340-mRNA-1 |
| chr2_3 | CDS | 61646021 | 61646075 | 61646021 | ID=Msa0304340-mRNA-1:cds;Parent=Msa0304340-mRNA-1 |
| chr2_3 | CDS | 61646421 | 61646648 | 61646421 | ID=Msa0304340-mRNA-1:cds;Parent=Msa0304340-mRNA-1 |
| chr2_3 | three_prime_UTR | 61646649 | 61646942 | 61646649 | ID=Msa0304340-mRNA-1:three_prime_utr;Parent=Msa0304340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
