Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094910 | sp|Q4VA72|BRCC3_XENTR | 44.751 | 181 | 81 | 4 | 1 | 166 | 1 | 177 | 2.50e-45 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094910 | G7IMH2 | 94.808 | 443 | 8 | 2 | 1 | 428 | 1 | 443 | 0.0 | 856 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094910 | Msa0304340 | 0.896401 | 3.822757e-76 | -8.615850e-47 |
| Msa0094910 | Msa0305900 | 0.827641 | 1.398598e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094910 | MtrunA17_Chr2g0332611 | 96.154 | 364 | 8 | 2 | 71 | 428 | 1 | 364 | 0.0 | 709 |
| Msa0094910 | MtrunA17_Chr2g0332601 | 98.592 | 71 | 1 | 0 | 1 | 71 | 1 | 71 | 6.46e-45 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094910 | AT1G80210.1 | 64.516 | 403 | 116 | 8 | 1 | 384 | 1 | 395 | 2.16e-178 | 504 |
| Msa0094910 | AT1G80210.2 | 65.600 | 375 | 104 | 7 | 1 | 356 | 1 | 369 | 2.79e-171 | 484 |
| Msa0094910 | AT3G06820.3 | 65.394 | 393 | 110 | 7 | 1 | 372 | 1 | 388 | 1.19e-167 | 476 |
| Msa0094910 | AT3G06820.2 | 65.394 | 393 | 110 | 7 | 1 | 372 | 1 | 388 | 1.19e-167 | 476 |
| Msa0094910 | AT3G06820.1 | 63.462 | 312 | 99 | 5 | 71 | 372 | 1 | 307 | 2.69e-124 | 363 |
Find 118 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTGATTCTGGGTTTAT+TGG | 0.115541 | 1_2:-78336023 | Msa0094910:CDS |
| CGATGCTCAGTGAAATATTT+TGG | 0.127476 | 1_2:-78333220 | Msa0094910:three_prime_UTR |
| ATGTATCAACTTCTTGATTC+TGG | 0.141321 | 1_2:-78336032 | Msa0094910:CDS |
| CTATTAATCTTTAACCTAAT+TGG | 0.182784 | 1_2:+78338556 | None:intergenic |
| CACTGAAACCGAAGAGATTA+TGG | 0.203215 | 1_2:-78338300 | Msa0094910:CDS |
| TTCTTGATTCTGGGTTTATT+GGG | 0.251629 | 1_2:-78336022 | Msa0094910:CDS |
| ACACCACACTTCGACTTATC+AGG | 0.275809 | 1_2:-78334124 | Msa0094910:CDS |
| ATTTGTTTAATTAGCCAATT+AGG | 0.275927 | 1_2:-78338570 | Msa0094910:five_prime_UTR |
| TTGTTCCTCCAAGAATAAAA+TGG | 0.292010 | 1_2:+78333152 | None:intergenic |
| AGCTATGCACCGCTCAAATA+TGG | 0.296293 | 1_2:-78335151 | Msa0094910:CDS |
| AAAATTAAATCAGGACTATA+CGG | 0.302565 | 1_2:-78333083 | Msa0094910:three_prime_UTR |
| GAGATTATGGGTCTTCTTCT+TGG | 0.309605 | 1_2:-78338287 | Msa0094910:CDS |
| GAATCACCAGTGTCCTGCTC+TGG | 0.330705 | 1_2:+78335703 | None:intergenic |
| TCTTGAAGTGCGTTGATTGC+AGG | 0.331174 | 1_2:+78333974 | None:intergenic |
| AGTTATCTCAATGACATTCA+TGG | 0.337538 | 1_2:-78333124 | Msa0094910:three_prime_UTR |
| GGAGTGTGACTGCATTGATA+TGG | 0.369051 | 1_2:-78338122 | Msa0094910:CDS |
| TGTATCAACTTCTTGATTCT+GGG | 0.370430 | 1_2:-78336031 | Msa0094910:CDS |
| GACTAAGAGAGAATGAAATT+CGG | 0.373072 | 1_2:-78333949 | Msa0094910:CDS |
| GAAGCAGCAGCCAACTGTTC+AGG | 0.373869 | 1_2:+78338045 | None:intergenic |
| TGAAAATGTCCGAAGAAGTT+TGG | 0.381529 | 1_2:-78338349 | Msa0094910:CDS |
| AATGCCGATGCCAACTATCT+AGG | 0.394026 | 1_2:-78335264 | Msa0094910:CDS |
| AGTTATGTCAAAATTAAATC+AGG | 0.397209 | 1_2:-78333092 | Msa0094910:three_prime_UTR |
| AGAGGGAGTGAAGCAAGTTT+AGG | 0.400423 | 1_2:-78333527 | Msa0094910:CDS |
| CGTCGATCAGACCTTGTTTG+AGG | 0.408498 | 1_2:+78338090 | None:intergenic |
| GAGTGAAGAAGCCAAGAGTC+TGG | 0.408537 | 1_2:-78333570 | Msa0094910:CDS |
| ACTGAAACCGAAGAGATTAT+GGG | 0.413726 | 1_2:-78338299 | Msa0094910:CDS |
| AGATGAACTTCCTCGATGTA+TGG | 0.414680 | 1_2:+78333463 | None:intergenic |
| ACTAAGAGAGAATGAAATTC+GGG | 0.428257 | 1_2:-78333948 | Msa0094910:intron |
| TGATGAATCTATATGAATAA+TGG | 0.429530 | 1_2:+78335780 | None:intergenic |
| GACAATTTAACAACAAGATC+TGG | 0.432323 | 1_2:-78335745 | Msa0094910:CDS |
| CACAGAATGACTGTTACAAC+TGG | 0.444669 | 1_2:-78337396 | Msa0094910:intron |
| GCATGTTAACCAAACTTCTT+CGG | 0.444704 | 1_2:+78338340 | None:intergenic |
| CCTGGTAGCCGGAGCAGAAA+AGG | 0.449380 | 1_2:-78333380 | Msa0094910:CDS |
| TCTTCTTCTTGGCGATATCC+AGG | 0.452533 | 1_2:-78338276 | Msa0094910:intron |
| AACAAGATCTGGTTACTTCA+AGG | 0.457060 | 1_2:-78335734 | Msa0094910:CDS |
| TGCCTCCGCCTCCAGACTCT+TGG | 0.459710 | 1_2:+78333559 | None:intergenic |
| AGCCAAGAGTCTGGAGGCGG+AGG | 0.461420 | 1_2:-78333561 | Msa0094910:CDS |
| GGAAGAACAACGAGGGTGAT+AGG | 0.461704 | 1_2:-78337375 | Msa0094910:CDS |
| AAGAAGACCCATAATCTCTT+CGG | 0.464604 | 1_2:+78338292 | None:intergenic |
| GAGAAGTGCTGGTGCTAGTA+AGG | 0.473131 | 1_2:-78335680 | Msa0094910:intron |
| TAAACTTGCTTCACTCCCTC+TGG | 0.474010 | 1_2:+78333529 | None:intergenic |
| TATGGGAGATGCAACTTGAC+GGG | 0.478253 | 1_2:+78333481 | None:intergenic |
| TAGATAGTTGGCATCGGCAT+TGG | 0.478653 | 1_2:+78335266 | None:intergenic |
| TCTGCTTTCCATCAGATGAC+TGG | 0.487274 | 1_2:+78335848 | None:intergenic |
| GAGTGTGACTGCATTGATAT+GGG | 0.495477 | 1_2:-78338121 | Msa0094910:CDS |
| ATGCCGATGCCAACTATCTA+GGG | 0.495958 | 1_2:-78335263 | Msa0094910:CDS |
| GGTTGAAGAAGGAGGCGAGA+GGG | 0.499327 | 1_2:-78338483 | Msa0094910:five_prime_UTR |
| CATACTTTCTGACATATCCA+TGG | 0.509731 | 1_2:+78335179 | None:intergenic |
| CAGAGTTCAAGTGAATCTCT+TGG | 0.511986 | 1_2:-78333422 | Msa0094910:CDS |
| ATTGCTTTCCAGTCATCTGA+TGG | 0.523557 | 1_2:-78335856 | Msa0094910:CDS |
| CTCTGCGAGTTTCTTTGACG+AGG | 0.523918 | 1_2:+78333440 | None:intergenic |
| AATCACCAGTGTCCTGCTCT+GGG | 0.524238 | 1_2:+78335704 | None:intergenic |
| CATAATCTCTTCGGTTTCAG+TGG | 0.524734 | 1_2:+78338301 | None:intergenic |
| TTTACAGGAGACAGAGGTAT+GGG | 0.525737 | 1_2:+78335811 | None:intergenic |
| GATGAACTTCCTCGATGTAT+GGG | 0.533300 | 1_2:+78333464 | None:intergenic |
| TAGACAGTTGAGGTTGAAGA+AGG | 0.533784 | 1_2:-78338494 | Msa0094910:five_prime_UTR |
| ATGATGATAGCGGCGAATCA+AGG | 0.533813 | 1_2:+78334389 | None:intergenic |
| TAACAATGTTGAATTCTCGT+TGG | 0.537203 | 1_2:-78333356 | Msa0094910:three_prime_UTR |
| TACAATTGTGAGTGGTGACT+TGG | 0.540547 | 1_2:-78333175 | Msa0094910:three_prime_UTR |
| ATCTCAATGACATTCATGGT+TGG | 0.540600 | 1_2:-78333120 | Msa0094910:three_prime_UTR |
| GTTAAATTGTCTGAGGAACT+TGG | 0.540855 | 1_2:+78335757 | None:intergenic |
| GTATGGGAGATGCAACTTGA+CGG | 0.541009 | 1_2:+78333480 | None:intergenic |
| ACGGGGAGAAGCAACTAGAC+GGG | 0.542351 | 1_2:+78333499 | None:intergenic |
| TCAAAGAGTGTAGCTAGTCC+TGG | 0.543158 | 1_2:-78333398 | Msa0094910:CDS |
| CAAGGATGGCAGCACATGAA+GGG | 0.544109 | 1_2:+78334423 | None:intergenic |
| CAAGGGAGATAGCCCAGAGC+AGG | 0.545536 | 1_2:-78335716 | Msa0094910:CDS |
| ATTTACAGGAGACAGAGGTA+TGG | 0.546956 | 1_2:+78335810 | None:intergenic |
| TATCTAGGGAGCGTAAAAGA+TGG | 0.550604 | 1_2:-78335249 | Msa0094910:CDS |
| GAACAACGAGGGTGATAGGC+TGG | 0.559162 | 1_2:-78337371 | Msa0094910:CDS |
| GTGTAGCTAGTCCTGGTAGC+CGG | 0.559875 | 1_2:-78333391 | Msa0094910:CDS |
| TGGTGCAGAGTATATTAGAA+AGG | 0.560870 | 1_2:-78334452 | Msa0094910:CDS |
| ACAAGGATGGCAGCACATGA+AGG | 0.562454 | 1_2:+78334422 | None:intergenic |
| ACAAGATCTGGTTACTTCAA+GGG | 0.568314 | 1_2:-78335733 | Msa0094910:CDS |
| AAATTAAATCAGGACTATAC+GGG | 0.570034 | 1_2:-78333082 | Msa0094910:three_prime_UTR |
| ACTGGTGATTCGAGAAGTGC+TGG | 0.570423 | 1_2:-78335691 | Msa0094910:CDS |
| GACGGGGAGAAGCAACTAGA+CGG | 0.572216 | 1_2:+78333498 | None:intergenic |
| ACATACCGACATGTGAAGGC+AGG | 0.575866 | 1_2:+78337322 | None:intergenic |
| AGAAGCCAAGAGTCTGGAGG+CGG | 0.576842 | 1_2:-78333564 | Msa0094910:CDS |
| GCAACATGTACTATTTGAAG+AGG | 0.579067 | 1_2:-78334356 | Msa0094910:CDS |
| CAGTAATATGAGGATGTGAA+TGG | 0.584536 | 1_2:+78337346 | None:intergenic |
| GGATATGTCAGAAAGTATGC+AGG | 0.584919 | 1_2:-78335175 | Msa0094910:CDS |
| CATTGCAGTTGATGATCCCA+TGG | 0.590197 | 1_2:-78335196 | Msa0094910:CDS |
| GAAGGCAGGACAGTAATATG+AGG | 0.590307 | 1_2:+78337336 | None:intergenic |
| TCTTGTTGTTAAATTGTCTG+AGG | 0.596310 | 1_2:+78335750 | None:intergenic |
| ACAGTTGAGGTTGAAGAAGG+AGG | 0.602951 | 1_2:-78338491 | Msa0094910:five_prime_UTR |
| GATAGCCCAGAGCAGGACAC+TGG | 0.603898 | 1_2:-78335709 | Msa0094910:CDS |
| AGGTTGAAGAAGGAGGCGAG+AGG | 0.607767 | 1_2:-78338484 | Msa0094910:five_prime_UTR |
| AAGTACATACCGACATGTGA+AGG | 0.609102 | 1_2:+78337318 | None:intergenic |
| AAGCCATCTTACAAAATACA+AGG | 0.610913 | 1_2:-78334315 | Msa0094910:intron |
| ATGTACTATTTGAAGAGGAA+CGG | 0.613140 | 1_2:-78334351 | Msa0094910:CDS |
| TGTTTCTGACTAGACAGTTG+AGG | 0.614389 | 1_2:-78338504 | Msa0094910:five_prime_UTR |
| ATACTTTCTGACATATCCAT+GGG | 0.614506 | 1_2:+78335180 | None:intergenic |
| ACTGTCCTGCCTTCACATGT+CGG | 0.615521 | 1_2:-78337327 | Msa0094910:intron |
| TTCGCCGCTATCATCATACA+AGG | 0.623157 | 1_2:-78334383 | Msa0094910:CDS |
| TTACAACGAAGATGCAAACA+AGG | 0.623673 | 1_2:-78335985 | Msa0094910:intron |
| AAGGATGGCAGCACATGAAG+GGG | 0.623863 | 1_2:+78334424 | None:intergenic |
| GCGGAGGCATCTACGTCCAG+AGG | 0.627316 | 1_2:-78333545 | Msa0094910:CDS |
| GCTCCCTAGATAGTTGGCAT+CGG | 0.649706 | 1_2:+78335260 | None:intergenic |
| GGGGTGCATCTCCTCAAACA+AGG | 0.651860 | 1_2:-78338101 | Msa0094910:CDS |
| CGGGGAGAAGCAACTAGACG+GGG | 0.653934 | 1_2:+78333500 | None:intergenic |
| ATCAAGGTTGATAAAAGACA+AGG | 0.656437 | 1_2:+78334405 | None:intergenic |
| CGGAGGCATCTACGTCCAGA+GGG | 0.659336 | 1_2:-78333544 | Msa0094910:CDS |
| AGTGTGACTGCATTGATATG+GGG | 0.661338 | 1_2:-78338120 | Msa0094910:CDS |
| ACCTCATGTCCATATTTGAG+CGG | 0.663052 | 1_2:+78335142 | None:intergenic |
| ATGGGAGATGCAACTTGACG+GGG | 0.663091 | 1_2:+78333482 | None:intergenic |
| CACCACTCACAATTGTACAC+AGG | 0.666140 | 1_2:+78333181 | None:intergenic |
| ACCGCTCAAATATGGACATG+AGG | 0.667262 | 1_2:-78335143 | Msa0094910:intron |
| TGAAGAAGCCAAGAGTCTGG+AGG | 0.667597 | 1_2:-78333567 | Msa0094910:CDS |
| AAGCCTGATAAGTCGAAGTG+TGG | 0.672156 | 1_2:+78334121 | None:intergenic |
| GTGTGGTGTATGAAAGCGAG+TGG | 0.677265 | 1_2:+78334138 | None:intergenic |
| ATACTCAATCAACTTGCACA+AGG | 0.679543 | 1_2:+78334098 | None:intergenic |
| AGATCCTTGTATGATGATAG+CGG | 0.689342 | 1_2:+78334379 | None:intergenic |
| ACATAGAATGTACATGATAG+CGG | 0.690172 | 1_2:-78333277 | Msa0094910:three_prime_UTR |
| TACAACTGGAAGAACAACGA+GGG | 0.713101 | 1_2:-78337382 | Msa0094910:CDS |
| AGGTTGATAAAAGACAAGGA+TGG | 0.722279 | 1_2:+78334409 | None:intergenic |
| TACCTGTGTACAATTGTGAG+TGG | 0.729721 | 1_2:-78333183 | Msa0094910:three_prime_UTR |
| GTTGCATCTCCCATACATCG+AGG | 0.759729 | 1_2:-78333473 | Msa0094910:CDS |
| TTACAACTGGAAGAACAACG+AGG | 0.766921 | 1_2:-78337383 | Msa0094910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAATAAAGAAAAAAT+TGG | + | chr1_2:78333451-78333470 | None:intergenic | 10.0% |
| !!! | AATAAAGAATTATTACTTTT+TGG | - | chr1_2:78337680-78337699 | Msa0094910:intron | 10.0% |
| !!! | TATTAAAATTTTCAACTTGA+TGG | + | chr1_2:78333094-78333113 | None:intergenic | 15.0% |
| !!! | AAAACTCATTTTTAATTCAA+TGG | - | chr1_2:78333727-78333746 | Msa0094910:intron | 15.0% |
| !!! | TTTAAATTGTAATTTTTCCT+AGG | - | chr1_2:78336364-78336383 | Msa0094910:intron | 15.0% |
| !!! | TTAAATTGTAATTTTTCCTA+GGG | - | chr1_2:78336365-78336384 | Msa0094910:intron | 15.0% |
| !!! | GTTTTAAAATAACACATATT+TGG | - | chr1_2:78337208-78337227 | Msa0094910:intron | 15.0% |
| !! | AAATAGGACTAATAAATAAA+CGG | + | chr1_2:78337640-78337659 | None:intergenic | 15.0% |
| !!! | TTTATTAGTCCTATTTTTAT+TGG | - | chr1_2:78337644-78337663 | Msa0094910:intron | 15.0% |
| !! | GTAAATAACAGTAAAAAAAT+TGG | + | chr1_2:78337887-78337906 | None:intergenic | 15.0% |
| !!! | AAGTTGAAAATTTTAATAGC+TGG | - | chr1_2:78333096-78333115 | Msa0094910:three_prime_UTR | 20.0% |
| !! | ATTTGTTTAATTAGCCAATT+AGG | - | chr1_2:78333119-78333138 | Msa0094910:three_prime_UTR | 20.0% |
| !! | CTATTAATCTTTAACCTAAT+TGG | + | chr1_2:78333136-78333155 | None:intergenic | 20.0% |
| !!! | AGAATGAGATTATCATTTTA+GGG | - | chr1_2:78333259-78333278 | Msa0094910:three_prime_UTR | 20.0% |
| !!! | ATTATCATTTTAGGGTTTTT+AGG | - | chr1_2:78333267-78333286 | Msa0094910:three_prime_UTR | 20.0% |
| !!! | TTATCATTTTAGGGTTTTTA+GGG | - | chr1_2:78333268-78333287 | Msa0094910:three_prime_UTR | 20.0% |
| !! | AACATTGTGAAATACAAATT+GGG | + | chr1_2:78333502-78333521 | None:intergenic | 20.0% |
| !! | ATAGACTATAAATAATAGGT+AGG | + | chr1_2:78334897-78334916 | None:intergenic | 20.0% |
| !! | GATGATAGACTATAAATAAT+AGG | + | chr1_2:78334901-78334920 | None:intergenic | 20.0% |
| !! | TGATGAATCTATATGAATAA+TGG | + | chr1_2:78335912-78335931 | None:intergenic | 20.0% |
| !! | AAATGCAATTATGATTATAC+TGG | + | chr1_2:78336286-78336305 | None:intergenic | 20.0% |
| !! | GTCAAACTTTGAATTATAAA+TGG | - | chr1_2:78337053-78337072 | Msa0094910:intron | 20.0% |
| !! | TTAAAATAACACATATTTGG+TGG | - | chr1_2:78337211-78337230 | Msa0094910:intron | 20.0% |
| !!! | CGTACATATATGAAATTTTA+TGG | - | chr1_2:78337429-78337448 | Msa0094910:intron | 20.0% |
| !!! | ATTTTATGGAAACACTATTT+TGG | - | chr1_2:78337443-78337462 | Msa0094910:intron | 20.0% |
| !!! | TTTTATGGAAACACTATTTT+GGG | - | chr1_2:78337444-78337463 | Msa0094910:intron | 20.0% |
| !! | AATAGGACTAATAAATAAAC+GGG | + | chr1_2:78337639-78337658 | None:intergenic | 20.0% |
| !! | AAGAACAAACCAATAAAAAT+AGG | + | chr1_2:78337656-78337675 | None:intergenic | 20.0% |
| !! | TTGGAAATAAAATTTCATAG+AGG | + | chr1_2:78337868-78337887 | None:intergenic | 20.0% |
| !!! | TTTTTACTGTTATTTACAGA+AGG | - | chr1_2:78337890-78337909 | Msa0094910:intron | 20.0% |
| !!! | TTAGTTCTGAATCTTAATTA+GGG | + | chr1_2:78337916-78337935 | None:intergenic | 20.0% |
| !! | AGTTATGTCAAAATTAAATC+AGG | - | chr1_2:78338597-78338616 | Msa0094910:five_prime_UTR | 20.0% |
| !! | AAAATTAAATCAGGACTATA+CGG | - | chr1_2:78338606-78338625 | Msa0094910:five_prime_UTR | 20.0% |
| !! | GAGAATGAGATTATCATTTT+AGG | - | chr1_2:78333258-78333277 | Msa0094910:three_prime_UTR | 25.0% |
| ! | ACATTGTGAAATACAAATTG+GGG | + | chr1_2:78333501-78333520 | None:intergenic | 25.0% |
| ! | CAACATTGTGAAATACAAAT+TGG | + | chr1_2:78333503-78333522 | None:intergenic | 25.0% |
| ! | AATAACACAGAACAAGAAAA+AGG | + | chr1_2:78333687-78333706 | None:intergenic | 25.0% |
| ! | ATTTCTAATTGAAACATGTG+TGG | + | chr1_2:78333890-78333909 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTAACCAAACA+GGG | + | chr1_2:78333940-78333959 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTAACCAAAC+AGG | + | chr1_2:78333941-78333960 | None:intergenic | 25.0% |
| ! | TGTATAACATAAAGGATGTT+AGG | + | chr1_2:78334588-78334607 | None:intergenic | 25.0% |
| ! | ATATGAATCAAATATGTTGC+TGG | - | chr1_2:78334722-78334741 | Msa0094910:intron | 25.0% |
| ! | ATAGATACTAGATCAAAATG+TGG | - | chr1_2:78334757-78334776 | Msa0094910:intron | 25.0% |
| ! | CTTGAATACATTGAATGTAA+TGG | + | chr1_2:78334812-78334831 | None:intergenic | 25.0% |
| !!! | ATTTACTTTGGTTTTGGATA+GGG | + | chr1_2:78334861-78334880 | None:intergenic | 25.0% |
| ! | CTGTTTCAATTAAACAATAC+AGG | + | chr1_2:78335033-78335052 | None:intergenic | 25.0% |
| !!! | TGCTATTTATACTTCACTTT+TGG | - | chr1_2:78335242-78335261 | Msa0094910:CDS | 25.0% |
| !!! | TACTTCACTTTTGGTATTTA+AGG | - | chr1_2:78335251-78335270 | Msa0094910:CDS | 25.0% |
| ! | TGTAAGACATAGAAAATGTA+TGG | - | chr1_2:78335294-78335313 | Msa0094910:CDS | 25.0% |
| !!! | GTTCTATAAATTAGGTTGAA+AGG | - | chr1_2:78335371-78335390 | Msa0094910:intron | 25.0% |
| !! | TAATGATTATACTGTTGCTT+TGG | + | chr1_2:78335596-78335615 | None:intergenic | 25.0% |
| !! | TTTACTATTTTGTAGATGTG+CGG | - | chr1_2:78335625-78335644 | Msa0094910:intron | 25.0% |
| !!! | ATAATGGAGCTTTTATTTAC+AGG | + | chr1_2:78335896-78335915 | None:intergenic | 25.0% |
| ! | TCACTCACAAAAATATAGAT+TGG | + | chr1_2:78336148-78336167 | None:intergenic | 25.0% |
| ! | GAAATTCTTTCCTTTATACT+GGG | - | chr1_2:78336185-78336204 | Msa0094910:intron | 25.0% |
| ! | AACATCACTTTATCAACAAA+AGG | + | chr1_2:78336223-78336242 | None:intergenic | 25.0% |
| ! | ATAAAGTGATGTTGATCTTA+TGG | - | chr1_2:78336230-78336249 | Msa0094910:intron | 25.0% |
| !! | ATAATTGCATTTTTCTGTCT+AGG | - | chr1_2:78336294-78336313 | Msa0094910:intron | 25.0% |
| ! | ACTGAAATTAGGAAGATTAA+GGG | - | chr1_2:78336767-78336786 | Msa0094910:intron | 25.0% |
| ! | TTACAGTAAAATGGATATCA+GGG | + | chr1_2:78336798-78336817 | None:intergenic | 25.0% |
| ! | TTTACAGTAAAATGGATATC+AGG | + | chr1_2:78336799-78336818 | None:intergenic | 25.0% |
| ! | CATTACTGTTTACAGTAAAA+TGG | + | chr1_2:78336807-78336826 | None:intergenic | 25.0% |
| ! | ATAGGCATTTCATATATACT+TGG | + | chr1_2:78336947-78336966 | None:intergenic | 25.0% |
| ! | TTAGTGTACTATGTTATCAT+AGG | + | chr1_2:78336965-78336984 | None:intergenic | 25.0% |
| ! | GCATTAGAAATATAATCATG+CGG | - | chr1_2:78336990-78337009 | Msa0094910:intron | 25.0% |
| ! | CATTAGAAATATAATCATGC+GGG | - | chr1_2:78336991-78337010 | Msa0094910:intron | 25.0% |
| ! | ATTAGAAATATAATCATGCG+GGG | - | chr1_2:78336992-78337011 | Msa0094910:intron | 25.0% |
| ! | ATTGTATAATGATTGTTCAC+AGG | - | chr1_2:78337133-78337152 | Msa0094910:intron | 25.0% |
| !!! | TGTTATTTTAAAACCCAAGA+TGG | + | chr1_2:78337202-78337221 | None:intergenic | 25.0% |
| ! | ATAAAATTTCATAGAGGATC+AGG | + | chr1_2:78337862-78337881 | None:intergenic | 25.0% |
| !!! | GTTAGTTCTGAATCTTAATT+AGG | + | chr1_2:78337917-78337936 | None:intergenic | 25.0% |
| ! | ATTAAGATTCAGAACTAACT+TGG | - | chr1_2:78337918-78337937 | Msa0094910:intron | 25.0% |
| !! | ACAGAAATCTCAAATTTGTT+GGG | + | chr1_2:78338020-78338039 | None:intergenic | 25.0% |
| !! | TTTCAAACTAGCAAATTTTG+CGG | + | chr1_2:78338448-78338467 | None:intergenic | 25.0% |
| ! | GACATTTTCGCGAAAAAAAT+TGG | + | chr1_2:78333309-78333328 | None:intergenic | 30.0% |
| AATTGGGATTATACTATACC+TGG | + | chr1_2:78333434-78333453 | None:intergenic | 30.0% | |
| !! | ATTTTTCAGCATTCGAAGAA+TGG | - | chr1_2:78333545-78333564 | Msa0094910:CDS | 30.0% |
| !! | TTTTTCAGCATTCGAAGAAT+GGG | - | chr1_2:78333546-78333565 | Msa0094910:CDS | 30.0% |
| ATTGAATGTAATTACACCTG+CGG | - | chr1_2:78333844-78333863 | Msa0094910:intron | 30.0% | |
| AACCATTGCATTAAACACAT+GGG | + | chr1_2:78334181-78334200 | None:intergenic | 30.0% | |
| AAACCATTGCATTAAACACA+TGG | + | chr1_2:78334182-78334201 | None:intergenic | 30.0% | |
| AGAACAGCAACTATCAAAAT+TGG | + | chr1_2:78334221-78334240 | None:intergenic | 30.0% | |
| ! | TTGCTGTTCTTAGTGATTTA+AGG | - | chr1_2:78334231-78334250 | Msa0094910:intron | 30.0% |
| GAAGACAATATCGAAACAAT+GGG | + | chr1_2:78334412-78334431 | None:intergenic | 30.0% | |
| AGAAGACAATATCGAAACAA+TGG | + | chr1_2:78334413-78334432 | None:intergenic | 30.0% | |
| !!! | TTGTTTTAGTTGTTTGTGCT+TGG | - | chr1_2:78334453-78334472 | Msa0094910:CDS | 30.0% |
| TCATAAATGCCATACACATT+AGG | + | chr1_2:78334494-78334513 | None:intergenic | 30.0% | |
| TGTTAGCATAGATTTGAGAA+AGG | - | chr1_2:78334556-78334575 | Msa0094910:intron | 30.0% | |
| CTACGAACTGTATAACATAA+AGG | + | chr1_2:78334596-78334615 | None:intergenic | 30.0% | |
| !! | GTCAACAGTATTTTTGTGTA+TGG | - | chr1_2:78334624-78334643 | Msa0094910:intron | 30.0% |
| !!! | GATTTACTTTGGTTTTGGAT+AGG | + | chr1_2:78334862-78334881 | None:intergenic | 30.0% |
| AGTCTTCGTATAATTTCTCA+TGG | + | chr1_2:78334992-78335011 | None:intergenic | 30.0% | |
| GAAGTATAAATAGCAGATAC+AGG | + | chr1_2:78335237-78335256 | None:intergenic | 30.0% | |
| !! | TCACTTTTGGTATTTAAGGT+AGG | - | chr1_2:78335255-78335274 | Msa0094910:CDS | 30.0% |
| GCTAGAGAGTTCTATAAATT+AGG | - | chr1_2:78335363-78335382 | Msa0094910:intron | 30.0% | |
| CAGTACTCACTATTCATATA+CGG | - | chr1_2:78335423-78335442 | Msa0094910:intron | 30.0% | |
| TACGGATTCTAAACTTCTAA+TGG | - | chr1_2:78335441-78335460 | Msa0094910:intron | 30.0% | |
| ! | TGCTTTGGATAAAATCAAAC+AGG | + | chr1_2:78335581-78335600 | None:intergenic | 30.0% |
| ATGTATCAACTTCTTGATTC+TGG | - | chr1_2:78335657-78335676 | Msa0094910:intron | 30.0% | |
| TGTATCAACTTCTTGATTCT+GGG | - | chr1_2:78335658-78335677 | Msa0094910:intron | 30.0% | |
| TTCTTGATTCTGGGTTTATT+GGG | - | chr1_2:78335667-78335686 | Msa0094910:intron | 30.0% | |
| !! | TCTTGTTGTTAAATTGTCTG+AGG | + | chr1_2:78335942-78335961 | None:intergenic | 30.0% |
| GACAATTTAACAACAAGATC+TGG | - | chr1_2:78335944-78335963 | Msa0094910:intron | 30.0% | |
| AACTGTTGTCTATTCTTCAT+GGG | + | chr1_2:78336069-78336088 | None:intergenic | 30.0% | |
| AAACTGTTGTCTATTCTTCA+TGG | + | chr1_2:78336070-78336089 | None:intergenic | 30.0% | |
| TTACATTTGAATGCAGAACA+TGG | - | chr1_2:78336102-78336121 | Msa0094910:intron | 30.0% | |
| AGTGAAGTTCTTAAAGATCA+GGG | - | chr1_2:78336163-78336182 | Msa0094910:intron | 30.0% | |
| GGAAATTCTTTCCTTTATAC+TGG | - | chr1_2:78336184-78336203 | Msa0094910:intron | 30.0% | |
| GCAATTATGATTATACTGGT+GGG | + | chr1_2:78336282-78336301 | None:intergenic | 30.0% | |
| TGCAATTATGATTATACTGG+TGG | + | chr1_2:78336283-78336302 | None:intergenic | 30.0% | |
| ! | AATTGTAATTTTTCCTAGGG+TGG | - | chr1_2:78336368-78336387 | Msa0094910:intron | 30.0% |
| ! | ATTGTAATTTTTCCTAGGGT+GGG | - | chr1_2:78336369-78336388 | Msa0094910:intron | 30.0% |
| ATACTTTCTGACATATCCAT+GGG | + | chr1_2:78336512-78336531 | None:intergenic | 30.0% | |
| TGTTTATCAACCGACAATTT+AGG | - | chr1_2:78336606-78336625 | Msa0094910:intron | 30.0% | |
| AAAAAACACGCCTAAATTGT+CGG | + | chr1_2:78336619-78336638 | None:intergenic | 30.0% | |
| TTCCTAATTTCAGTCTCTAA+TGG | + | chr1_2:78336761-78336780 | None:intergenic | 30.0% | |
| GACTGAAATTAGGAAGATTA+AGG | - | chr1_2:78336766-78336785 | Msa0094910:intron | 30.0% | |
| CTGAAATTAGGAAGATTAAG+GGG | - | chr1_2:78336768-78336787 | Msa0094910:intron | 30.0% | |
| TTAGAAATATAATCATGCGG+GGG | - | chr1_2:78336993-78337012 | Msa0094910:intron | 30.0% | |
| ! | ACCATGTCTAATCTTTTATG+AGG | - | chr1_2:78337159-78337178 | Msa0094910:intron | 30.0% |
| ACCTCATAAAAGATTAGACA+TGG | + | chr1_2:78337163-78337182 | None:intergenic | 30.0% | |
| !! | ATCAAGGTTGATAAAAGACA+AGG | + | chr1_2:78337287-78337306 | None:intergenic | 30.0% |
| ATGTACTATTTGAAGAGGAA+CGG | - | chr1_2:78337338-78337357 | Msa0094910:CDS | 30.0% | |
| AAGCCATCTTACAAAATACA+AGG | - | chr1_2:78337374-78337393 | Msa0094910:CDS | 30.0% | |
| AAAGTACAAACAAATGGCAT+AGG | + | chr1_2:78337511-78337530 | None:intergenic | 30.0% | |
| CCATTTGTTTGTACTTTGTA+GGG | - | chr1_2:78337514-78337533 | Msa0094910:intron | 30.0% | |
| GACTAAGAGAGAATGAAATT+CGG | - | chr1_2:78337740-78337759 | Msa0094910:intron | 30.0% | |
| ACTAAGAGAGAATGAAATTC+GGG | - | chr1_2:78337741-78337760 | Msa0094910:intron | 30.0% | |
| ! | AATAACTTGTGAGCATGTTT+AGG | + | chr1_2:78337991-78338010 | None:intergenic | 30.0% |
| GACAGAAATCTCAAATTTGT+TGG | + | chr1_2:78338021-78338040 | None:intergenic | 30.0% | |
| TAACAATGTTGAATTCTCGT+TGG | - | chr1_2:78338333-78338352 | Msa0094910:CDS | 30.0% | |
| ACATAGAATGTACATGATAG+CGG | - | chr1_2:78338412-78338431 | Msa0094910:five_prime_UTR | 30.0% | |
| !!! | CAGTGAAATATTTTGGTTGT+TGG | - | chr1_2:78338476-78338495 | Msa0094910:five_prime_UTR | 30.0% |
| TTGTTCCTCCAAGAATAAAA+TGG | + | chr1_2:78338540-78338559 | None:intergenic | 30.0% | |
| AGTTATCTCAATGACATTCA+TGG | - | chr1_2:78338565-78338584 | Msa0094910:five_prime_UTR | 30.0% | |
| TGAAAATGTCCGAAGAAGTT+TGG | - | chr1_2:78333340-78333359 | Msa0094910:three_prime_UTR | 35.0% | |
| GCATGTTAACCAAACTTCTT+CGG | + | chr1_2:78333352-78333371 | None:intergenic | 35.0% | |
| ACTGAAACCGAAGAGATTAT+GGG | - | chr1_2:78333390-78333409 | Msa0094910:CDS | 35.0% | |
| AAGAAGACCCATAATCTCTT+CGG | + | chr1_2:78333400-78333419 | None:intergenic | 35.0% | |
| TGAAACTAATCCTGAACAGT+TGG | - | chr1_2:78333634-78333653 | Msa0094910:intron | 35.0% | |
| TGCTTCATAAGTGATATGTG+AGG | + | chr1_2:78333765-78333784 | None:intergenic | 35.0% | |
| GAGAGCTTATGAAAATAAGC+TGG | - | chr1_2:78334074-78334093 | Msa0094910:intron | 35.0% | |
| ! | GCTTATTTGAGTTTACCTAC+CGG | + | chr1_2:78334145-78334164 | None:intergenic | 35.0% |
| TCAAATAAGCCAATCCAAAC+AGG | - | chr1_2:78334155-78334174 | Msa0094910:CDS | 35.0% | |
| CATTCTGTGCTATGAAGTTA+AGG | + | chr1_2:78334282-78334301 | None:intergenic | 35.0% | |
| CAGTAATATGAGGATGTGAA+TGG | + | chr1_2:78334346-78334365 | None:intergenic | 35.0% | |
| AATATCGAAACAATGGGAGA+CGG | + | chr1_2:78334406-78334425 | None:intergenic | 35.0% | |
| TTAGTTGTTTGTGCTTGGAT+TGG | - | chr1_2:78334458-78334477 | Msa0094910:intron | 35.0% | |
| GAACTGAATCCTAATGTGTA+TGG | - | chr1_2:78334482-78334501 | Msa0094910:intron | 35.0% | |
| CCTTCAATTGATGTTGAAGT+TGG | + | chr1_2:78334683-78334702 | None:intergenic | 35.0% | |
| CCAACTTCAACATCAATTGA+AGG | - | chr1_2:78334680-78334699 | Msa0094910:intron | 35.0% | |
| AATCAAATATGTTGCTGGAG+AGG | - | chr1_2:78334727-78334746 | Msa0094910:intron | 35.0% | |
| TTCAATGTATTCAAGCATCC+AGG | - | chr1_2:78334817-78334836 | Msa0094910:intron | 35.0% | |
| !!! | TTTGGATAGGGTTTTAGAGT+GGG | + | chr1_2:78334849-78334868 | None:intergenic | 35.0% |
| !!! | TTTTGGATAGGGTTTTAGAG+TGG | + | chr1_2:78334850-78334869 | None:intergenic | 35.0% |
| !! | CGACAGATTTACTTTGGTTT+TGG | + | chr1_2:78334867-78334886 | None:intergenic | 35.0% |
| TCTAACTAACTCACAGACAA+AGG | - | chr1_2:78334929-78334948 | Msa0094910:intron | 35.0% | |
| CTAACTAACTCACAGACAAA+GGG | - | chr1_2:78334930-78334949 | Msa0094910:intron | 35.0% | |
| TAACTAACTCACAGACAAAG+GGG | - | chr1_2:78334931-78334950 | Msa0094910:intron | 35.0% | |
| ATTTGCATCAGCCAAATGAT+AGG | + | chr1_2:78334961-78334980 | None:intergenic | 35.0% | |
| GGGTATTATTCAGTGATTTG+TGG | + | chr1_2:78335140-78335159 | None:intergenic | 35.0% | |
| AAAGGTTACAGTAGAATGCA+GGG | + | chr1_2:78335160-78335179 | None:intergenic | 35.0% | |
| TCTACTGTAACCTTTCTGAA+TGG | - | chr1_2:78335165-78335184 | Msa0094910:CDS | 35.0% | |
| !! | TCAAGTTGAACCATTCAGAA+AGG | + | chr1_2:78335178-78335197 | None:intergenic | 35.0% |
| ATAACTGTACATGCCATGTA+GGG | + | chr1_2:78335208-78335227 | None:intergenic | 35.0% | |
| !! | ATCACAAACTTTTGAGGAAG+AGG | + | chr1_2:78335472-78335491 | None:intergenic | 35.0% |
| TTCCTCAAAAGTTTGTGATC+TGG | - | chr1_2:78335473-78335492 | Msa0094910:intron | 35.0% | |
| ! | AACCAGATCACAAACTTTTG+AGG | + | chr1_2:78335478-78335497 | None:intergenic | 35.0% |
| CTTCTTGATTCTGGGTTTAT+TGG | - | chr1_2:78335666-78335685 | Msa0094910:intron | 35.0% | |
| TTACAACGAAGATGCAAACA+AGG | - | chr1_2:78335704-78335723 | Msa0094910:CDS | 35.0% | |
| ! | GCTTTGAACTGTATTCAGAT+AGG | - | chr1_2:78335797-78335816 | Msa0094910:CDS | 35.0% |
| !! | CTTTTATTTACAGGAGACAG+AGG | + | chr1_2:78335887-78335906 | None:intergenic | 35.0% |
| GTTAAATTGTCTGAGGAACT+TGG | + | chr1_2:78335935-78335954 | None:intergenic | 35.0% | |
| AACAAGATCTGGTTACTTCA+AGG | - | chr1_2:78335955-78335974 | Msa0094910:intron | 35.0% | |
| ACAAGATCTGGTTACTTCAA+GGG | - | chr1_2:78335956-78335975 | Msa0094910:intron | 35.0% | |
| ACTGTTGTCTATTCTTCATG+GGG | + | chr1_2:78336068-78336087 | None:intergenic | 35.0% | |
| ATTTGAATGCAGAACATGGT+GGG | - | chr1_2:78336106-78336125 | Msa0094910:intron | 35.0% | |
| GAGTGAAGTTCTTAAAGATC+AGG | - | chr1_2:78336162-78336181 | Msa0094910:intron | 35.0% | |
| GCATACAAAACCCAGTATAA+AGG | + | chr1_2:78336198-78336217 | None:intergenic | 35.0% | |
| GATCTTATGGAAATGTGTTC+AGG | - | chr1_2:78336243-78336262 | Msa0094910:intron | 35.0% | |
| ! | TTGTAATTTTTCCTAGGGTG+GGG | - | chr1_2:78336370-78336389 | Msa0094910:intron | 35.0% |
| CATACTTTCTGACATATCCA+TGG | + | chr1_2:78336513-78336532 | None:intergenic | 35.0% | |
| !!! | GACAATTTAGGCGTGTTTTT+TGG | - | chr1_2:78336618-78336637 | Msa0094910:intron | 35.0% |
| !!! | TTAGGCGTGTTTTTTGGATT+TGG | - | chr1_2:78336624-78336643 | Msa0094910:intron | 35.0% |
| TAGTATATAAAGCTCAACCC+AGG | - | chr1_2:78336695-78336714 | Msa0094910:intron | 35.0% | |
| TGCCATTAGAGACTGAAATT+AGG | - | chr1_2:78336756-78336775 | Msa0094910:intron | 35.0% | |
| AAATTAGGAAGATTAAGGGG+AGG | - | chr1_2:78336771-78336790 | Msa0094910:intron | 35.0% | |
| AATTAGGAAGATTAAGGGGA+GGG | - | chr1_2:78336772-78336791 | Msa0094910:intron | 35.0% | |
| AAGGAAAGCTTCATAAGCAA+AGG | + | chr1_2:78336904-78336923 | None:intergenic | 35.0% | |
| TTTGCTTATGAAGCTTTCCT+TGG | - | chr1_2:78336903-78336922 | Msa0094910:intron | 35.0% | |
| ! | ATATATACTTGGTGGAACAG+TGG | + | chr1_2:78336936-78336955 | None:intergenic | 35.0% |
| GGCATTTCATATATACTTGG+TGG | + | chr1_2:78336944-78336963 | None:intergenic | 35.0% | |
| TAGAAATATAATCATGCGGG+GGG | - | chr1_2:78336994-78337013 | Msa0094910:intron | 35.0% | |
| ACAAGATAGTTTCTCCATCT+TGG | - | chr1_2:78337185-78337204 | Msa0094910:intron | 35.0% | |
| CAAGATAGTTTCTCCATCTT+GGG | - | chr1_2:78337186-78337205 | Msa0094910:intron | 35.0% | |
| TGGTGCAGAGTATATTAGAA+AGG | - | chr1_2:78337237-78337256 | Msa0094910:intron | 35.0% | |
| !! | AGGTTGATAAAAGACAAGGA+TGG | + | chr1_2:78337283-78337302 | None:intergenic | 35.0% |
| AGATCCTTGTATGATGATAG+CGG | + | chr1_2:78337313-78337332 | None:intergenic | 35.0% | |
| GCAACATGTACTATTTGAAG+AGG | - | chr1_2:78337333-78337352 | Msa0094910:CDS | 35.0% | |
| ! | CCACCTTGTATTTTGTAAGA+TGG | + | chr1_2:78337380-78337399 | None:intergenic | 35.0% |
| CCATCTTACAAAATACAAGG+TGG | - | chr1_2:78337377-78337396 | Msa0094910:CDS | 35.0% | |
| GCCATTTGTTTGTACTTTGT+AGG | - | chr1_2:78337513-78337532 | Msa0094910:intron | 35.0% | |
| CCCTACAAAGTACAAACAAA+TGG | + | chr1_2:78337517-78337536 | None:intergenic | 35.0% | |
| TTGTTTGTACTTTGTAGGGA+TGG | - | chr1_2:78337518-78337537 | Msa0094910:intron | 35.0% | |
| TGTTTGTACTTTGTAGGGAT+GGG | - | chr1_2:78337519-78337538 | Msa0094910:intron | 35.0% | |
| ATACTCAATCAACTTGCACA+AGG | + | chr1_2:78337594-78337613 | None:intergenic | 35.0% | |
| !! | TGTGCAAGTTGATTGAGTAT+TGG | - | chr1_2:78337594-78337613 | Msa0094910:intron | 35.0% |
| CTCTTAAGATACTGACAACA+TGG | + | chr1_2:78337812-78337831 | None:intergenic | 35.0% | |
| CATGTTGTCAGTATCTTAAG+AGG | - | chr1_2:78337810-78337829 | Msa0094910:intron | 35.0% | |
| TTGTCAGTATCTTAAGAGGT+TGG | - | chr1_2:78337814-78337833 | Msa0094910:intron | 35.0% | |
| ACATAGGACATGATAGAAGA+GGG | + | chr1_2:78337946-78337965 | None:intergenic | 35.0% | |
| TACATAGGACATGATAGAAG+AGG | + | chr1_2:78337947-78337966 | None:intergenic | 35.0% | |
| ! | ATTGTTATCCTTTTCTGCTC+CGG | + | chr1_2:78338320-78338339 | None:intergenic | 35.0% |
| ! | CGATGCTCAGTGAAATATTT+TGG | - | chr1_2:78338469-78338488 | Msa0094910:five_prime_UTR | 35.0% |
| !! | TGACTTGGCCATTTTATTCT+TGG | - | chr1_2:78338529-78338548 | Msa0094910:five_prime_UTR | 35.0% |
| ATCTCAATGACATTCATGGT+TGG | - | chr1_2:78338569-78338588 | Msa0094910:five_prime_UTR | 35.0% | |
| ! | TGTTTCTGACTAGACAGTTG+AGG | - | chr1_2:78333185-78333204 | Msa0094910:three_prime_UTR | 40.0% |
| TAGACAGTTGAGGTTGAAGA+AGG | - | chr1_2:78333195-78333214 | Msa0094910:three_prime_UTR | 40.0% | |
| CATAATCTCTTCGGTTTCAG+TGG | + | chr1_2:78333391-78333410 | None:intergenic | 40.0% | |
| CACTGAAACCGAAGAGATTA+TGG | - | chr1_2:78333389-78333408 | Msa0094910:CDS | 40.0% | |
| GAGATTATGGGTCTTCTTCT+TGG | - | chr1_2:78333402-78333421 | Msa0094910:CDS | 40.0% | |
| ! | GAGTGTGACTGCATTGATAT+GGG | - | chr1_2:78333568-78333587 | Msa0094910:CDS | 40.0% |
| ! | AGTGTGACTGCATTGATATG+GGG | - | chr1_2:78333569-78333588 | Msa0094910:CDS | 40.0% |
| TCACTTATGAAGCAGAGACA+CGG | - | chr1_2:78333771-78333790 | Msa0094910:intron | 40.0% | |
| TTCTGCAGAGCATATCACTT+AGG | - | chr1_2:78333914-78333933 | Msa0094910:intron | 40.0% | |
| ATTAAACACATGGGCCTGTT+TGG | + | chr1_2:78334172-78334191 | None:intergenic | 40.0% | |
| CACAGAATGACTGTTACAAC+TGG | - | chr1_2:78334293-78334312 | Msa0094910:intron | 40.0% | |
| TTACAACTGGAAGAACAACG+AGG | - | chr1_2:78334306-78334325 | Msa0094910:intron | 40.0% | |
| TACAACTGGAAGAACAACGA+GGG | - | chr1_2:78334307-78334326 | Msa0094910:intron | 40.0% | |
| AAGTACATACCGACATGTGA+AGG | + | chr1_2:78334374-78334393 | None:intergenic | 40.0% | |
| CACATGTCGGTATGTACTTT+CGG | - | chr1_2:78334375-78334394 | Msa0094910:CDS | 40.0% | |
| ACATGTCGGTATGTACTTTC+GGG | - | chr1_2:78334376-78334395 | Msa0094910:CDS | 40.0% | |
| ATATCGAAACAATGGGAGAC+GGG | + | chr1_2:78334405-78334424 | None:intergenic | 40.0% | |
| !!! | TTTTAGAGTGGGAGATAACC+TGG | + | chr1_2:78334838-78334857 | None:intergenic | 40.0% |
| AACTAACTCACAGACAAAGG+GGG | - | chr1_2:78334932-78334951 | Msa0094910:intron | 40.0% | |
| AAAGGGGGTTTCCTATCATT+TGG | - | chr1_2:78334947-78334966 | Msa0094910:intron | 40.0% | |
| GAAAGGTTACAGTAGAATGC+AGG | + | chr1_2:78335161-78335180 | None:intergenic | 40.0% | |
| GATAACTGTACATGCCATGT+AGG | + | chr1_2:78335209-78335228 | None:intergenic | 40.0% | |
| !! | AGGTTGAAAGGCTTTTTAGC+AGG | - | chr1_2:78335383-78335402 | Msa0094910:intron | 40.0% |
| !! | TGCTTGTTATCACGTTGGAT+AGG | - | chr1_2:78335515-78335534 | Msa0094910:intron | 40.0% |
| AACGAAGATGCAAACAAGGT+TGG | - | chr1_2:78335708-78335727 | Msa0094910:CDS | 40.0% | |
| ATTGCTTTCCAGTCATCTGA+TGG | - | chr1_2:78335833-78335852 | Msa0094910:CDS | 40.0% | |
| ! | TTTACAGGAGACAGAGGTAT+GGG | + | chr1_2:78335881-78335900 | None:intergenic | 40.0% |
| ATTTACAGGAGACAGAGGTA+TGG | + | chr1_2:78335882-78335901 | None:intergenic | 40.0% | |
| CATTTGAATGCAGAACATGG+TGG | - | chr1_2:78336105-78336124 | Msa0094910:intron | 40.0% | |
| ! | TGTAATTTTTCCTAGGGTGG+GGG | - | chr1_2:78336371-78336390 | Msa0094910:intron | 40.0% |
| ! | TTTTACGCTCCCTAGATAGT+TGG | + | chr1_2:78336438-78336457 | None:intergenic | 40.0% |
| ! | TATCTAGGGAGCGTAAAAGA+TGG | - | chr1_2:78336440-78336459 | Msa0094910:intron | 40.0% |
| ! | GGATATGTCAGAAAGTATGC+AGG | - | chr1_2:78336514-78336533 | Msa0094910:intron | 40.0% |
| ACCTCATGTCCATATTTGAG+CGG | + | chr1_2:78336550-78336569 | None:intergenic | 40.0% | |
| TGACCTGGTGATAAATGTCT+GGG | - | chr1_2:78336718-78336737 | Msa0094910:intron | 40.0% | |
| !! | TCATACTGAGGAGCATTCTA+GGG | + | chr1_2:78336873-78336892 | None:intergenic | 40.0% |
| !! | ATCATACTGAGGAGCATTCT+AGG | + | chr1_2:78336874-78336893 | None:intergenic | 40.0% |
| ! | TAACACATATTTGGTGGCAG+TGG | - | chr1_2:78337217-78337236 | Msa0094910:intron | 40.0% |
| ! | CTACATCTAAAGCGCTACAT+AGG | + | chr1_2:78337962-78337981 | None:intergenic | 40.0% |
| GATGAACTTCCTCGATGTAT+GGG | + | chr1_2:78338228-78338247 | None:intergenic | 40.0% | |
| AGATGAACTTCCTCGATGTA+TGG | + | chr1_2:78338229-78338248 | None:intergenic | 40.0% | |
| CAGAGTTCAAGTGAATCTCT+TGG | - | chr1_2:78338267-78338286 | Msa0094910:intron | 40.0% | |
| ! | CAAACTAGCAAATTTTGCGG+AGG | + | chr1_2:78338445-78338464 | None:intergenic | 40.0% |
| TACCTGTGTACAATTGTGAG+TGG | - | chr1_2:78338506-78338525 | Msa0094910:five_prime_UTR | 40.0% | |
| TACAATTGTGAGTGGTGACT+TGG | - | chr1_2:78338514-78338533 | Msa0094910:five_prime_UTR | 40.0% | |
| !! | CTTGGCCATTTTATTCTTGG+AGG | - | chr1_2:78338532-78338551 | Msa0094910:five_prime_UTR | 40.0% |
| ACAGTTGAGGTTGAAGAAGG+AGG | - | chr1_2:78333198-78333217 | Msa0094910:three_prime_UTR | 45.0% | |
| TCTTCTTCTTGGCGATATCC+AGG | - | chr1_2:78333413-78333432 | Msa0094910:CDS | 45.0% | |
| ! | GGAGTGTGACTGCATTGATA+TGG | - | chr1_2:78333567-78333586 | Msa0094910:CDS | 45.0% |
| CACTTATGAAGCAGAGACAC+GGG | - | chr1_2:78333772-78333791 | Msa0094910:intron | 45.0% | |
| ACTTATGAAGCAGAGACACG+GGG | - | chr1_2:78333773-78333792 | Msa0094910:intron | 45.0% | |
| TGGCATGTTGACACAAGTAG+TGG | - | chr1_2:78333804-78333823 | Msa0094910:intron | 45.0% | |
| CATATCACTTAGGCCCTGTT+TGG | - | chr1_2:78333924-78333943 | Msa0094910:intron | 45.0% | |
| GTTCTCACAACTGCTTAAGC+CGG | - | chr1_2:78334123-78334142 | Msa0094910:CDS | 45.0% | |
| GGCCCATGTGTTTAATGCAA+TGG | - | chr1_2:78334176-78334195 | Msa0094910:intron | 45.0% | |
| GAAGGCAGGACAGTAATATG+AGG | + | chr1_2:78334356-78334375 | None:intergenic | 45.0% | |
| CGTGCTCGACAGATTTACTT+TGG | + | chr1_2:78334873-78334892 | None:intergenic | 45.0% | |
| !! | GATTTGTGGAGAAGTGTCTG+AGG | + | chr1_2:78335126-78335145 | None:intergenic | 45.0% |
| !! | CAGCATGCTTGTTATCACGT+TGG | - | chr1_2:78335510-78335529 | Msa0094910:intron | 45.0% |
| ! | TTTTGTAGATGTGCGGACTC+AGG | - | chr1_2:78335632-78335651 | Msa0094910:intron | 45.0% |
| TCTGCTTTCCATCAGATGAC+TGG | + | chr1_2:78335844-78335863 | None:intergenic | 45.0% | |
| GAAATGTGTTCAGGCCCTAA+AGG | - | chr1_2:78336252-78336271 | Msa0094910:intron | 45.0% | |
| TACTGGTGGGACATCCTTTA+GGG | + | chr1_2:78336269-78336288 | None:intergenic | 45.0% | |
| ATACTGGTGGGACATCCTTT+AGG | + | chr1_2:78336270-78336289 | None:intergenic | 45.0% | |
| ! | GTAATTTTTCCTAGGGTGGG+GGG | - | chr1_2:78336372-78336391 | Msa0094910:intron | 45.0% |
| !! | TAGATAGTTGGCATCGGCAT+TGG | + | chr1_2:78336426-78336445 | None:intergenic | 45.0% |
| AATGCCGATGCCAACTATCT+AGG | - | chr1_2:78336425-78336444 | Msa0094910:intron | 45.0% | |
| ATGCCGATGCCAACTATCTA+GGG | - | chr1_2:78336426-78336445 | Msa0094910:intron | 45.0% | |
| !! | CATTGCAGTTGATGATCCCA+TGG | - | chr1_2:78336493-78336512 | Msa0094910:intron | 45.0% |
| AGCTATGCACCGCTCAAATA+TGG | - | chr1_2:78336538-78336557 | Msa0094910:intron | 45.0% | |
| ACCGCTCAAATATGGACATG+AGG | - | chr1_2:78336546-78336565 | Msa0094910:intron | 45.0% | |
| ATCTTGTCCCCTTGCACAAA+AGG | - | chr1_2:78336651-78336670 | Msa0094910:intron | 45.0% | |
| TCTTGTCCCCTTGCACAAAA+GGG | - | chr1_2:78336652-78336671 | Msa0094910:intron | 45.0% | |
| CATTTATCACCAGGTCACCT+GGG | + | chr1_2:78336715-78336734 | None:intergenic | 45.0% | |
| ACATTTATCACCAGGTCACC+TGG | + | chr1_2:78336716-78336735 | None:intergenic | 45.0% | |
| GTGACCTGGTGATAAATGTC+TGG | - | chr1_2:78336717-78336736 | Msa0094910:intron | 45.0% | |
| CTACCCAGACATTTATCACC+AGG | + | chr1_2:78336724-78336743 | None:intergenic | 45.0% | |
| AAGGCAGCAGAATCATACTG+AGG | + | chr1_2:78336885-78336904 | None:intergenic | 45.0% | |
| AATATAATCATGCGGGGGGA+AGG | - | chr1_2:78336998-78337017 | Msa0094910:intron | 45.0% | |
| !! | ATGATGATAGCGGCGAATCA+AGG | + | chr1_2:78337303-78337322 | None:intergenic | 45.0% |
| TTCGCCGCTATCATCATACA+AGG | - | chr1_2:78337306-78337325 | Msa0094910:intron | 45.0% | |
| ACACCACACTTCGACTTATC+AGG | - | chr1_2:78337565-78337584 | Msa0094910:intron | 45.0% | |
| AAGCCTGATAAGTCGAAGTG+TGG | + | chr1_2:78337571-78337590 | None:intergenic | 45.0% | |
| !! | TCTTGAAGTGCGTTGATTGC+AGG | + | chr1_2:78337718-78337737 | None:intergenic | 45.0% |
| ! | TAAACTTGCTTCACTCCCTC+TGG | + | chr1_2:78338163-78338182 | None:intergenic | 45.0% |
| AGAGGGAGTGAAGCAAGTTT+AGG | - | chr1_2:78338162-78338181 | Msa0094910:intron | 45.0% | |
| TATGGGAGATGCAACTTGAC+GGG | + | chr1_2:78338211-78338230 | None:intergenic | 45.0% | |
| GTATGGGAGATGCAACTTGA+CGG | + | chr1_2:78338212-78338231 | None:intergenic | 45.0% | |
| ! | TCAAAGAGTGTAGCTAGTCC+TGG | - | chr1_2:78338291-78338310 | Msa0094910:CDS | 45.0% |
| CACCACTCACAATTGTACAC+AGG | + | chr1_2:78338511-78338530 | None:intergenic | 45.0% | |
| !! | AAAAAAATAAAGAAAAAATT+GGG | + | chr1_2:78333450-78333469 | None:intergenic | 5.0% |
| ! | CGTCGATCAGACCTTGTTTG+AGG | + | chr1_2:78333602-78333621 | None:intergenic | 50.0% |
| TCACAACTGCTTAAGCCGGT+AGG | - | chr1_2:78334127-78334146 | Msa0094910:CDS | 50.0% | |
| ACACATGGGCCTGTTTGGAT+TGG | + | chr1_2:78334167-78334186 | None:intergenic | 50.0% | |
| GGAAGAACAACGAGGGTGAT+AGG | - | chr1_2:78334314-78334333 | Msa0094910:intron | 50.0% | |
| ACTGTCCTGCCTTCACATGT+CGG | - | chr1_2:78334362-78334381 | Msa0094910:CDS | 50.0% | |
| ACATACCGACATGTGAAGGC+AGG | + | chr1_2:78334370-78334389 | None:intergenic | 50.0% | |
| ACTTGAGCACATGCCCTACA+TGG | - | chr1_2:78335192-78335211 | Msa0094910:CDS | 50.0% | |
| AATCACCAGTGTCCTGCTCT+GGG | + | chr1_2:78335988-78336007 | None:intergenic | 50.0% | |
| ! | ACTGGTGATTCGAGAAGTGC+TGG | - | chr1_2:78335998-78336017 | Msa0094910:CDS | 50.0% |
| !! | GAGAAGTGCTGGTGCTAGTA+AGG | - | chr1_2:78336009-78336028 | Msa0094910:CDS | 50.0% |
| TGGGGGGAGATCTTCAGAAT+TGG | - | chr1_2:78336388-78336407 | Msa0094910:intron | 50.0% | |
| GGGGGGAGATCTTCAGAATT+GGG | - | chr1_2:78336389-78336408 | Msa0094910:intron | 50.0% | |
| GGGGGAGATCTTCAGAATTG+GGG | - | chr1_2:78336390-78336409 | Msa0094910:intron | 50.0% | |
| GCTCCCTAGATAGTTGGCAT+CGG | + | chr1_2:78336432-78336451 | None:intergenic | 50.0% | |
| ! | TGTGCTCCCTTTTGTGCAAG+GGG | + | chr1_2:78336661-78336680 | None:intergenic | 50.0% |
| ! | CTGTGCTCCCTTTTGTGCAA+GGG | + | chr1_2:78336662-78336681 | None:intergenic | 50.0% |
| ! | ACTGTGCTCCCTTTTGTGCA+AGG | + | chr1_2:78336663-78336682 | None:intergenic | 50.0% |
| ! | TTGCACAAAAGGGAGCACAG+TGG | - | chr1_2:78336662-78336681 | Msa0094910:intron | 50.0% |
| AAGGATGGCAGCACATGAAG+GGG | + | chr1_2:78337268-78337287 | None:intergenic | 50.0% | |
| CAAGGATGGCAGCACATGAA+GGG | + | chr1_2:78337269-78337288 | None:intergenic | 50.0% | |
| ACAAGGATGGCAGCACATGA+AGG | + | chr1_2:78337270-78337289 | None:intergenic | 50.0% | |
| GTGTGGTGTATGAAAGCGAG+TGG | + | chr1_2:78337554-78337573 | None:intergenic | 50.0% | |
| GAGTGAAGAAGCCAAGAGTC+TGG | - | chr1_2:78338119-78338138 | Msa0094910:CDS | 50.0% | |
| TGAAGAAGCCAAGAGTCTGG+AGG | - | chr1_2:78338122-78338141 | Msa0094910:CDS | 50.0% | |
| ATGGGAGATGCAACTTGACG+GGG | + | chr1_2:78338210-78338229 | None:intergenic | 50.0% | |
| GTTGCATCTCCCATACATCG+AGG | - | chr1_2:78338216-78338235 | Msa0094910:intron | 50.0% | |
| CTCTGCGAGTTTCTTTGACG+AGG | + | chr1_2:78338252-78338271 | None:intergenic | 50.0% | |
| AGGTTGAAGAAGGAGGCGAG+AGG | - | chr1_2:78333205-78333224 | Msa0094910:three_prime_UTR | 55.0% | |
| GGTTGAAGAAGGAGGCGAGA+GGG | - | chr1_2:78333206-78333225 | Msa0094910:three_prime_UTR | 55.0% | |
| GGGGTGCATCTCCTCAAACA+AGG | - | chr1_2:78333588-78333607 | Msa0094910:intron | 55.0% | |
| GAAGCAGCAGCCAACTGTTC+AGG | + | chr1_2:78333647-78333666 | None:intergenic | 55.0% | |
| CAACACGTGTCTAACACCGC+AGG | + | chr1_2:78333863-78333882 | None:intergenic | 55.0% | |
| ! | CTGCGGTGTTAGACACGTGT+TGG | - | chr1_2:78333861-78333880 | Msa0094910:intron | 55.0% |
| GAACAACGAGGGTGATAGGC+TGG | - | chr1_2:78334318-78334337 | Msa0094910:CDS | 55.0% | |
| GAATCACCAGTGTCCTGCTC+TGG | + | chr1_2:78335989-78336008 | None:intergenic | 55.0% | |
| AAAGCTCAACCCAGGTGACC+TGG | - | chr1_2:78336703-78336722 | Msa0094910:intron | 55.0% | |
| GGAACAGTGGAACTGTGCCA+AGG | + | chr1_2:78336923-78336942 | None:intergenic | 55.0% | |
| AGAAGCCAAGAGTCTGGAGG+CGG | - | chr1_2:78338125-78338144 | Msa0094910:CDS | 55.0% | |
| ACGGGGAGAAGCAACTAGAC+GGG | + | chr1_2:78338193-78338212 | None:intergenic | 55.0% | |
| GACGGGGAGAAGCAACTAGA+CGG | + | chr1_2:78338194-78338213 | None:intergenic | 55.0% | |
| GTGTAGCTAGTCCTGGTAGC+CGG | - | chr1_2:78338298-78338317 | Msa0094910:CDS | 55.0% | |
| CAAGGGAGATAGCCCAGAGC+AGG | - | chr1_2:78335973-78335992 | Msa0094910:intron | 60.0% | |
| GATAGCCCAGAGCAGGACAC+TGG | - | chr1_2:78335980-78335999 | Msa0094910:intron | 60.0% | |
| TGAAGATCTCCCCCCACCCT+AGG | + | chr1_2:78336384-78336403 | None:intergenic | 60.0% | |
| !! | TGCGGGGGGAAGGTATTGTG+TGG | - | chr1_2:78337008-78337027 | Msa0094910:intron | 60.0% |
| !! | CGGAGGCATCTACGTCCAGA+GGG | - | chr1_2:78338145-78338164 | Msa0094910:intron | 60.0% |
| CGGGGAGAAGCAACTAGACG+GGG | + | chr1_2:78338192-78338211 | None:intergenic | 60.0% | |
| ! | CCTTTTCTGCTCCGGCTACC+AGG | + | chr1_2:78338312-78338331 | None:intergenic | 60.0% |
| CCTGGTAGCCGGAGCAGAAA+AGG | - | chr1_2:78338309-78338328 | Msa0094910:CDS | 60.0% | |
| AGAGACACGGGGCACGACAC+TGG | - | chr1_2:78333784-78333803 | Msa0094910:intron | 65.0% | |
| AGCCAAGAGTCTGGAGGCGG+AGG | - | chr1_2:78338128-78338147 | Msa0094910:CDS | 65.0% | |
| TGCCTCCGCCTCCAGACTCT+TGG | + | chr1_2:78338133-78338152 | None:intergenic | 65.0% | |
| !! | GCGGAGGCATCTACGTCCAG+AGG | - | chr1_2:78338144-78338163 | Msa0094910:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 78333082 | 78338629 | 78333082 | ID=Msa0094910;Name=Msa0094910 |
| chr1_2 | mRNA | 78333082 | 78338629 | 78333082 | ID=Msa0094910-mRNA-1;Parent=Msa0094910;Name=Msa0094910-mRNA-1;_AED=0.14;_eAED=0.14;_QI=242|0.77|0.7|1|0.77|0.7|10|294|428 |
| chr1_2 | exon | 78333082 | 78333603 | 78333082 | ID=Msa0094910-mRNA-1:exon:27955;Parent=Msa0094910-mRNA-1 |
| chr1_2 | exon | 78333949 | 78334003 | 78333949 | ID=Msa0094910-mRNA-1:exon:27954;Parent=Msa0094910-mRNA-1 |
| chr1_2 | exon | 78334111 | 78334176 | 78334111 | ID=Msa0094910-mRNA-1:exon:27953;Parent=Msa0094910-mRNA-1 |
| chr1_2 | exon | 78334316 | 78334474 | 78334316 | ID=Msa0094910-mRNA-1:exon:27952;Parent=Msa0094910-mRNA-1 |
| chr1_2 | exon | 78335144 | 78335325 | 78335144 | ID=Msa0094910-mRNA-1:exon:27951;Parent=Msa0094910-mRNA-1 |
| chr1_2 | exon | 78335681 | 78335896 | 78335681 | ID=Msa0094910-mRNA-1:exon:27950;Parent=Msa0094910-mRNA-1 |
| chr1_2 | exon | 78335986 | 78336071 | 78335986 | ID=Msa0094910-mRNA-1:exon:27949;Parent=Msa0094910-mRNA-1 |
| chr1_2 | exon | 78337328 | 78337413 | 78337328 | ID=Msa0094910-mRNA-1:exon:27948;Parent=Msa0094910-mRNA-1 |
| chr1_2 | exon | 78338060 | 78338157 | 78338060 | ID=Msa0094910-mRNA-1:exon:27947;Parent=Msa0094910-mRNA-1 |
| chr1_2 | exon | 78338277 | 78338629 | 78338277 | ID=Msa0094910-mRNA-1:exon:27946;Parent=Msa0094910-mRNA-1 |
| chr1_2 | five_prime_UTR | 78338388 | 78338629 | 78338388 | ID=Msa0094910-mRNA-1:five_prime_utr;Parent=Msa0094910-mRNA-1 |
| chr1_2 | CDS | 78338277 | 78338387 | 78338277 | ID=Msa0094910-mRNA-1:cds;Parent=Msa0094910-mRNA-1 |
| chr1_2 | CDS | 78338060 | 78338157 | 78338060 | ID=Msa0094910-mRNA-1:cds;Parent=Msa0094910-mRNA-1 |
| chr1_2 | CDS | 78337328 | 78337413 | 78337328 | ID=Msa0094910-mRNA-1:cds;Parent=Msa0094910-mRNA-1 |
| chr1_2 | CDS | 78335986 | 78336071 | 78335986 | ID=Msa0094910-mRNA-1:cds;Parent=Msa0094910-mRNA-1 |
| chr1_2 | CDS | 78335681 | 78335896 | 78335681 | ID=Msa0094910-mRNA-1:cds;Parent=Msa0094910-mRNA-1 |
| chr1_2 | CDS | 78335144 | 78335325 | 78335144 | ID=Msa0094910-mRNA-1:cds;Parent=Msa0094910-mRNA-1 |
| chr1_2 | CDS | 78334316 | 78334474 | 78334316 | ID=Msa0094910-mRNA-1:cds;Parent=Msa0094910-mRNA-1 |
| chr1_2 | CDS | 78334111 | 78334176 | 78334111 | ID=Msa0094910-mRNA-1:cds;Parent=Msa0094910-mRNA-1 |
| chr1_2 | CDS | 78333949 | 78334003 | 78333949 | ID=Msa0094910-mRNA-1:cds;Parent=Msa0094910-mRNA-1 |
| chr1_2 | CDS | 78333376 | 78333603 | 78333376 | ID=Msa0094910-mRNA-1:cds;Parent=Msa0094910-mRNA-1 |
| chr1_2 | three_prime_UTR | 78333082 | 78333375 | 78333082 | ID=Msa0094910-mRNA-1:three_prime_utr;Parent=Msa0094910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
