Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306820 | XP_006477355.1 | 52.055 | 146 | 51 | 4 | 1 | 139 | 1 | 134 | 8.58e-33 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306820 | sp|Q38838|AGL14_ARATH | 78.378 | 74 | 16 | 0 | 1 | 74 | 1 | 74 | 4.99e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306820 | A0A452YRT9 | 70.968 | 93 | 20 | 1 | 1 | 86 | 1 | 93 | 1.01e-34 | 125 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0306820 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0306820 | Msa1185310 | 0.839117 | 1.919077e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306820 | MtrunA17_Chr8g0351041 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 1.11e-35 | 120 |
| Msa0306820 | MtrunA17_Chr7g0246431 | 93.333 | 60 | 4 | 0 | 1 | 60 | 1 | 60 | 9.60e-35 | 120 |
| Msa0306820 | MtrunA17_Chr8g0351031 | 95.000 | 60 | 3 | 0 | 1 | 60 | 1 | 60 | 2.78e-34 | 119 |
| Msa0306820 | MtrunA17_Chr4g0057151 | 86.667 | 60 | 8 | 0 | 1 | 60 | 1 | 60 | 6.35e-31 | 110 |
| Msa0306820 | MtrunA17_Chr8g0380021 | 44.853 | 136 | 70 | 1 | 3 | 138 | 19 | 149 | 1.49e-27 | 102 |
| Msa0306820 | MtrunA17_Chr3g0077501 | 49.587 | 121 | 56 | 1 | 1 | 121 | 1 | 116 | 2.20e-27 | 101 |
| Msa0306820 | MtrunA17_Chr7g0246381 | 74.194 | 62 | 16 | 0 | 1 | 62 | 1 | 62 | 7.40e-27 | 95.5 |
| Msa0306820 | MtrunA17_Chr6g0455511 | 69.565 | 69 | 21 | 0 | 1 | 69 | 1 | 69 | 1.50e-26 | 99.8 |
| Msa0306820 | MtrunA17_Chr3g0097101 | 71.875 | 64 | 18 | 0 | 1 | 64 | 16 | 79 | 1.64e-26 | 99.8 |
| Msa0306820 | MtrunA17_Chr5g0420091 | 52.128 | 94 | 39 | 1 | 1 | 88 | 1 | 94 | 2.11e-26 | 98.6 |
| Msa0306820 | MtrunA17_Chr2g0284911 | 77.586 | 58 | 13 | 0 | 3 | 60 | 18 | 75 | 2.98e-26 | 99.4 |
| Msa0306820 | MtrunA17_Chr7g0220111 | 66.667 | 69 | 23 | 0 | 1 | 69 | 1 | 69 | 3.10e-26 | 99.0 |
| Msa0306820 | MtrunA17_Chr8g0377561 | 74.138 | 58 | 15 | 0 | 1 | 58 | 1 | 58 | 3.78e-26 | 94.7 |
| Msa0306820 | MtrunA17_Chr4g0061671 | 71.667 | 60 | 17 | 0 | 1 | 60 | 1 | 60 | 4.56e-26 | 97.1 |
| Msa0306820 | MtrunA17_Chr3g0122251 | 68.116 | 69 | 22 | 0 | 1 | 69 | 1 | 69 | 5.02e-26 | 98.6 |
| Msa0306820 | MtrunA17_Chr2g0308251 | 74.576 | 59 | 15 | 0 | 1 | 59 | 1 | 59 | 8.43e-26 | 93.6 |
| Msa0306820 | MtrunA17_Chr8g0351051 | 76.271 | 59 | 14 | 0 | 1 | 59 | 1 | 59 | 2.00e-25 | 97.1 |
| Msa0306820 | MtrunA17_Chr1g0173161 | 70.492 | 61 | 18 | 0 | 1 | 61 | 1 | 61 | 1.04e-24 | 90.5 |
| Msa0306820 | MtrunA17_Chr5g0427921 | 67.213 | 61 | 20 | 0 | 1 | 61 | 1 | 61 | 1.08e-24 | 89.7 |
| Msa0306820 | MtrunA17_Chr4g0020221 | 75.000 | 60 | 15 | 0 | 1 | 60 | 1 | 60 | 1.84e-24 | 94.7 |
| Msa0306820 | MtrunA17_Chr8g0366231 | 71.667 | 60 | 17 | 0 | 1 | 60 | 1 | 60 | 2.00e-24 | 94.0 |
| Msa0306820 | MtrunA17_Chr4g0061691 | 71.667 | 60 | 17 | 0 | 1 | 60 | 1 | 60 | 6.05e-24 | 92.8 |
| Msa0306820 | MtrunA17_Chr6g0474371 | 70.000 | 60 | 18 | 0 | 1 | 60 | 1 | 60 | 7.15e-24 | 91.7 |
| Msa0306820 | MtrunA17_Chr2g0279821 | 67.188 | 64 | 21 | 0 | 1 | 64 | 1 | 64 | 3.07e-23 | 90.9 |
| Msa0306820 | MtrunA17_Chr4g0018421 | 67.797 | 59 | 19 | 0 | 1 | 59 | 1 | 59 | 6.26e-23 | 89.4 |
| Msa0306820 | MtrunA17_Chr1g0204111 | 70.000 | 60 | 18 | 0 | 1 | 60 | 17 | 76 | 6.84e-23 | 90.5 |
| Msa0306820 | MtrunA17_Chr5g0427401 | 66.667 | 60 | 20 | 0 | 1 | 60 | 1 | 60 | 1.47e-22 | 89.0 |
| Msa0306820 | MtrunA17_Chr5g0412271 | 67.797 | 59 | 19 | 0 | 1 | 59 | 1 | 59 | 1.71e-22 | 89.0 |
| Msa0306820 | MtrunA17_Chr5g0412461 | 67.797 | 59 | 19 | 0 | 1 | 59 | 1 | 59 | 2.85e-22 | 88.2 |
| Msa0306820 | MtrunA17_Chr7g0220121 | 67.742 | 62 | 20 | 0 | 1 | 62 | 1 | 62 | 3.08e-22 | 88.6 |
| Msa0306820 | MtrunA17_Chr4g0049541 | 41.176 | 136 | 55 | 3 | 1 | 128 | 1 | 119 | 9.42e-22 | 86.7 |
| Msa0306820 | MtrunA17_Chr5g0420081 | 65.000 | 60 | 21 | 0 | 1 | 60 | 1 | 60 | 1.66e-21 | 86.3 |
| Msa0306820 | MtrunA17_Chr3g0142191 | 66.102 | 59 | 20 | 0 | 1 | 59 | 1 | 59 | 1.78e-21 | 86.3 |
| Msa0306820 | MtrunA17_Chr5g0411691 | 60.938 | 64 | 25 | 0 | 1 | 64 | 1 | 64 | 2.30e-21 | 86.3 |
| Msa0306820 | MtrunA17_Chr5g0425191 | 62.295 | 61 | 23 | 0 | 1 | 61 | 1 | 61 | 7.61e-21 | 81.3 |
| Msa0306820 | MtrunA17_Chr4g0049901 | 65.000 | 60 | 21 | 0 | 1 | 60 | 27 | 86 | 1.37e-20 | 84.0 |
| Msa0306820 | MtrunA17_Chr4g0044071 | 59.016 | 61 | 25 | 0 | 1 | 61 | 1 | 61 | 2.33e-20 | 80.5 |
| Msa0306820 | MtrunA17_Chr1g0159661 | 57.627 | 59 | 25 | 0 | 1 | 59 | 1 | 59 | 2.44e-20 | 82.0 |
| Msa0306820 | MtrunA17_Chr3g0125241 | 59.322 | 59 | 24 | 0 | 1 | 59 | 26 | 84 | 5.46e-20 | 81.6 |
| Msa0306820 | MtrunA17_Chr1g0164791 | 58.730 | 63 | 26 | 0 | 1 | 63 | 1 | 63 | 6.32e-20 | 82.0 |
| Msa0306820 | MtrunA17_Chr3g0134451 | 59.155 | 71 | 29 | 0 | 1 | 71 | 1 | 71 | 9.78e-20 | 83.2 |
| Msa0306820 | MtrunA17_Chr1g0166611 | 69.811 | 53 | 16 | 0 | 13 | 65 | 17 | 69 | 9.89e-19 | 76.6 |
| Msa0306820 | MtrunA17_Chr5g0404951 | 59.322 | 59 | 24 | 0 | 1 | 59 | 1 | 59 | 1.06e-18 | 79.0 |
| Msa0306820 | MtrunA17_Chr2g0292791 | 50.000 | 82 | 37 | 2 | 3 | 84 | 10 | 87 | 2.90e-16 | 72.4 |
| Msa0306820 | MtrunA17_Chr1g0175611 | 56.140 | 57 | 25 | 0 | 1 | 57 | 1 | 57 | 1.07e-15 | 69.7 |
| Msa0306820 | MtrunA17_Chr8g0379021 | 56.364 | 55 | 24 | 0 | 3 | 57 | 13 | 67 | 1.82e-15 | 69.3 |
| Msa0306820 | MtrunA17_Chr3g0089141 | 58.182 | 55 | 23 | 0 | 3 | 57 | 10 | 64 | 1.98e-15 | 70.1 |
| Msa0306820 | MtrunA17_Chr1g0208561 | 58.182 | 55 | 23 | 0 | 3 | 57 | 10 | 64 | 2.08e-15 | 70.1 |
| Msa0306820 | MtrunA17_Chr1g0175601 | 56.140 | 57 | 25 | 0 | 1 | 57 | 1 | 57 | 2.87e-15 | 68.9 |
| Msa0306820 | MtrunA17_Chr3g0099421 | 40.870 | 115 | 58 | 3 | 3 | 117 | 35 | 139 | 3.95e-15 | 69.7 |
| Msa0306820 | MtrunA17_Chr1g0206701 | 41.026 | 117 | 55 | 4 | 3 | 117 | 10 | 114 | 4.08e-15 | 69.3 |
| Msa0306820 | MtrunA17_Chr1g0180591 | 54.386 | 57 | 26 | 0 | 1 | 57 | 1 | 57 | 4.21e-15 | 68.6 |
| Msa0306820 | MtrunA17_Chr3g0099411 | 47.561 | 82 | 39 | 2 | 3 | 84 | 10 | 87 | 4.55e-15 | 68.9 |
| Msa0306820 | MtrunA17_Chr1g0208581 | 56.364 | 55 | 24 | 0 | 3 | 57 | 10 | 64 | 6.19e-15 | 68.9 |
| Msa0306820 | MtrunA17_Chr8g0376821 | 56.140 | 57 | 25 | 0 | 1 | 57 | 1 | 57 | 8.32e-15 | 67.8 |
| Msa0306820 | MtrunA17_Chr1g0206721 | 40.171 | 117 | 56 | 4 | 3 | 117 | 10 | 114 | 8.95e-15 | 68.6 |
| Msa0306820 | MtrunA17_Chr8g0355091 | 47.561 | 82 | 39 | 2 | 3 | 84 | 10 | 87 | 1.27e-14 | 68.2 |
| Msa0306820 | MtrunA17_Chr1g0149391 | 58.182 | 55 | 23 | 0 | 3 | 57 | 10 | 64 | 1.50e-14 | 68.2 |
| Msa0306820 | MtrunA17_Chr5g0422421 | 60.000 | 55 | 22 | 0 | 3 | 57 | 10 | 64 | 1.75e-14 | 67.8 |
| Msa0306820 | MtrunA17_Chr1g0169761 | 56.140 | 57 | 25 | 0 | 1 | 57 | 1 | 57 | 1.79e-14 | 66.6 |
| Msa0306820 | MtrunA17_Chr1g0187361 | 58.182 | 55 | 23 | 0 | 3 | 57 | 10 | 64 | 2.00e-14 | 67.8 |
| Msa0306820 | MtrunA17_Chr4g0018951 | 68.182 | 44 | 14 | 0 | 14 | 57 | 24 | 67 | 2.10e-14 | 66.2 |
| Msa0306820 | MtrunA17_Chr1g0188671 | 58.182 | 55 | 23 | 0 | 3 | 57 | 48 | 102 | 2.33e-14 | 67.8 |
| Msa0306820 | MtrunA17_Chr2g0333981 | 54.386 | 57 | 26 | 0 | 1 | 57 | 11 | 67 | 2.89e-14 | 66.2 |
| Msa0306820 | MtrunA17_Chr2g0317481 | 55.357 | 56 | 25 | 0 | 3 | 58 | 10 | 65 | 4.85e-14 | 66.6 |
| Msa0306820 | MtrunA17_Chr2g0317451 | 55.357 | 56 | 25 | 0 | 3 | 58 | 10 | 65 | 4.90e-14 | 66.6 |
| Msa0306820 | MtrunA17_Chr4g0052081 | 50.847 | 59 | 29 | 0 | 1 | 59 | 1 | 59 | 5.18e-14 | 65.5 |
| Msa0306820 | MtrunA17_Chr5g0419601 | 58.182 | 55 | 23 | 0 | 3 | 57 | 10 | 64 | 5.32e-14 | 66.6 |
| Msa0306820 | MtrunA17_Chr2g0325971 | 56.364 | 55 | 24 | 0 | 3 | 57 | 10 | 64 | 6.15e-14 | 66.2 |
| Msa0306820 | MtrunA17_Chr5g0417661 | 51.923 | 52 | 25 | 0 | 1 | 52 | 56 | 107 | 6.82e-14 | 63.9 |
| Msa0306820 | MtrunA17_Chr2g0300421 | 54.545 | 55 | 25 | 0 | 3 | 57 | 10 | 64 | 1.16e-13 | 64.7 |
| Msa0306820 | MtrunA17_Chr1g0206991 | 54.545 | 55 | 25 | 0 | 3 | 57 | 10 | 64 | 1.32e-13 | 64.7 |
| Msa0306820 | MtrunA17_Chr4g0074101 | 52.632 | 57 | 27 | 0 | 1 | 57 | 1 | 57 | 1.33e-13 | 64.7 |
| Msa0306820 | MtrunA17_Chr8g0357771 | 54.386 | 57 | 26 | 0 | 1 | 57 | 1 | 57 | 1.38e-13 | 64.3 |
| Msa0306820 | MtrunA17_Chr4g0060841 | 53.846 | 52 | 24 | 0 | 1 | 52 | 1 | 52 | 2.46e-13 | 65.5 |
| Msa0306820 | MtrunA17_Chr4g0052061 | 49.153 | 59 | 30 | 0 | 1 | 59 | 1 | 59 | 3.64e-13 | 62.8 |
| Msa0306820 | MtrunA17_Chr5g0422941 | 54.545 | 55 | 25 | 0 | 3 | 57 | 10 | 64 | 4.50e-13 | 63.9 |
| Msa0306820 | MtrunA17_Chr3g0111841 | 56.000 | 50 | 22 | 0 | 8 | 57 | 2 | 51 | 4.64e-13 | 60.5 |
| Msa0306820 | MtrunA17_Chr3g0089151 | 44.737 | 76 | 39 | 2 | 3 | 78 | 10 | 82 | 1.09e-12 | 60.8 |
| Msa0306820 | MtrunA17_Chr3g0085241 | 43.373 | 83 | 43 | 2 | 3 | 85 | 42 | 120 | 5.48e-12 | 61.2 |
| Msa0306820 | MtrunA17_Chr3g0119901 | 46.774 | 62 | 33 | 0 | 3 | 64 | 10 | 71 | 1.32e-11 | 59.7 |
| Msa0306820 | MtrunA17_Chr2g0300441 | 49.091 | 55 | 28 | 0 | 5 | 59 | 12 | 66 | 3.47e-11 | 58.9 |
| Msa0306820 | MtrunA17_Chr8g0356071 | 47.368 | 57 | 30 | 0 | 1 | 57 | 1 | 57 | 3.72e-11 | 57.8 |
| Msa0306820 | MtrunA17_Chr1g0206691 | 57.447 | 47 | 20 | 0 | 11 | 57 | 1 | 47 | 4.83e-11 | 58.2 |
| Msa0306820 | MtrunA17_Chr4g0071601 | 60.465 | 43 | 17 | 0 | 15 | 57 | 25 | 67 | 5.31e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306820 | AT2G45660.2 | 91.667 | 60 | 5 | 0 | 1 | 60 | 1 | 60 | 1.24e-34 | 118 |
| Msa0306820 | AT4G11880.2 | 78.378 | 74 | 16 | 0 | 1 | 74 | 1 | 74 | 1.50e-34 | 119 |
| Msa0306820 | AT4G11880.3 | 78.378 | 74 | 16 | 0 | 1 | 74 | 1 | 74 | 1.50e-34 | 119 |
| Msa0306820 | AT4G11880.4 | 78.378 | 74 | 16 | 0 | 1 | 74 | 1 | 74 | 5.07e-34 | 119 |
| Msa0306820 | AT4G11880.1 | 78.378 | 74 | 16 | 0 | 1 | 74 | 1 | 74 | 5.07e-34 | 119 |
| Msa0306820 | AT2G45660.1 | 91.667 | 60 | 5 | 0 | 1 | 60 | 1 | 60 | 9.55e-34 | 117 |
| Msa0306820 | AT4G22950.2 | 88.333 | 60 | 7 | 0 | 1 | 60 | 1 | 60 | 2.27e-33 | 115 |
| Msa0306820 | AT4G22950.3 | 88.333 | 60 | 7 | 0 | 1 | 60 | 1 | 60 | 3.07e-32 | 114 |
| Msa0306820 | AT4G22950.1 | 88.333 | 60 | 7 | 0 | 1 | 60 | 1 | 60 | 3.07e-32 | 114 |
| Msa0306820 | AT5G62165.6 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 3.03e-30 | 107 |
| Msa0306820 | AT5G62165.9 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 3.03e-30 | 107 |
| Msa0306820 | AT5G62165.7 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 3.03e-30 | 107 |
| Msa0306820 | AT5G62165.8 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 3.03e-30 | 107 |
| Msa0306820 | AT5G62165.13 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 3.03e-30 | 107 |
| Msa0306820 | AT5G62165.14 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 3.08e-30 | 105 |
| Msa0306820 | AT5G62165.17 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 3.77e-30 | 107 |
| Msa0306820 | AT5G62165.12 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 3.77e-30 | 107 |
| Msa0306820 | AT5G62165.11 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 3.77e-30 | 107 |
| Msa0306820 | AT5G62165.10 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 2.19e-29 | 106 |
| Msa0306820 | AT5G62165.4 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 2.19e-29 | 106 |
| Msa0306820 | AT5G62165.3 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 2.86e-29 | 106 |
| Msa0306820 | AT5G62165.1 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 2.86e-29 | 106 |
| Msa0306820 | AT5G62165.2 | 80.000 | 60 | 12 | 0 | 1 | 60 | 1 | 60 | 2.86e-29 | 106 |
| Msa0306820 | AT4G09960.2 | 50.413 | 121 | 55 | 1 | 1 | 121 | 1 | 116 | 3.13e-29 | 106 |
| Msa0306820 | AT4G09960.6 | 50.413 | 121 | 55 | 1 | 1 | 121 | 2 | 117 | 3.78e-29 | 106 |
| Msa0306820 | AT4G09960.1 | 50.413 | 121 | 55 | 1 | 1 | 121 | 1 | 116 | 3.85e-29 | 106 |
| Msa0306820 | AT4G09960.5 | 50.413 | 121 | 55 | 1 | 1 | 121 | 11 | 126 | 6.24e-29 | 106 |
| Msa0306820 | AT4G09960.3 | 50.413 | 121 | 55 | 1 | 1 | 121 | 27 | 142 | 1.15e-28 | 105 |
| Msa0306820 | AT4G09960.4 | 50.413 | 121 | 55 | 1 | 1 | 121 | 96 | 211 | 9.43e-28 | 105 |
| Msa0306820 | AT3G58780.2 | 57.317 | 82 | 30 | 1 | 3 | 84 | 18 | 94 | 5.99e-27 | 100 |
| Msa0306820 | AT5G15800.1 | 68.116 | 69 | 22 | 0 | 1 | 69 | 1 | 69 | 1.00e-26 | 100 |
| Msa0306820 | AT5G51860.2 | 73.438 | 64 | 17 | 0 | 1 | 64 | 1 | 64 | 1.53e-26 | 99.0 |
| Msa0306820 | AT5G15800.2 | 68.116 | 69 | 22 | 0 | 1 | 69 | 1 | 69 | 1.61e-26 | 100 |
| Msa0306820 | AT1G24260.3 | 69.565 | 69 | 21 | 0 | 1 | 69 | 1 | 69 | 1.62e-26 | 99.8 |
| Msa0306820 | AT5G51860.1 | 73.438 | 64 | 17 | 0 | 1 | 64 | 1 | 64 | 1.77e-26 | 99.0 |
| Msa0306820 | AT1G24260.1 | 69.565 | 69 | 21 | 0 | 1 | 69 | 1 | 69 | 2.33e-26 | 99.8 |
| Msa0306820 | AT1G24260.2 | 69.565 | 69 | 21 | 0 | 1 | 69 | 1 | 69 | 2.45e-26 | 99.8 |
| Msa0306820 | AT2G03710.3 | 73.333 | 60 | 16 | 0 | 1 | 60 | 1 | 60 | 2.61e-26 | 98.2 |
| Msa0306820 | AT2G42830.2 | 72.131 | 61 | 17 | 0 | 3 | 63 | 18 | 78 | 6.76e-26 | 98.6 |
| Msa0306820 | AT2G42830.1 | 72.131 | 61 | 17 | 0 | 3 | 63 | 18 | 78 | 6.92e-26 | 98.6 |
| Msa0306820 | AT2G45650.1 | 77.966 | 59 | 13 | 0 | 1 | 59 | 1 | 59 | 9.55e-26 | 98.2 |
| Msa0306820 | AT5G51870.2 | 73.770 | 61 | 16 | 0 | 1 | 61 | 1 | 61 | 1.18e-25 | 95.9 |
| Msa0306820 | AT3G58780.1 | 72.131 | 61 | 17 | 0 | 3 | 63 | 18 | 78 | 1.21e-25 | 97.8 |
| Msa0306820 | AT3G58780.5 | 72.131 | 61 | 17 | 0 | 3 | 63 | 24 | 84 | 1.24e-25 | 97.8 |
| Msa0306820 | AT2G03710.1 | 72.581 | 62 | 17 | 0 | 1 | 62 | 1 | 62 | 1.66e-25 | 97.8 |
| Msa0306820 | AT2G03710.2 | 72.581 | 62 | 17 | 0 | 1 | 62 | 1 | 62 | 1.73e-25 | 97.8 |
| Msa0306820 | AT4G18960.1 | 75.862 | 58 | 14 | 0 | 3 | 60 | 19 | 76 | 2.07e-25 | 97.4 |
| Msa0306820 | AT3G58780.4 | 72.131 | 61 | 17 | 0 | 3 | 63 | 18 | 78 | 2.15e-25 | 97.8 |
| Msa0306820 | AT3G02310.2 | 73.333 | 60 | 16 | 0 | 1 | 60 | 1 | 60 | 2.19e-25 | 95.9 |
| Msa0306820 | AT3G58780.3 | 74.138 | 58 | 15 | 0 | 3 | 60 | 18 | 75 | 2.62e-25 | 97.4 |
| Msa0306820 | AT3G02310.1 | 65.217 | 69 | 24 | 0 | 1 | 69 | 1 | 69 | 2.99e-25 | 97.1 |
| Msa0306820 | AT5G51870.1 | 73.770 | 61 | 16 | 0 | 1 | 61 | 1 | 61 | 3.15e-25 | 95.9 |
| Msa0306820 | AT5G51870.5 | 73.770 | 61 | 16 | 0 | 1 | 61 | 24 | 84 | 3.23e-25 | 95.5 |
| Msa0306820 | AT5G51870.4 | 73.770 | 61 | 16 | 0 | 1 | 61 | 1 | 61 | 8.68e-25 | 95.1 |
| Msa0306820 | AT5G51870.3 | 73.770 | 61 | 16 | 0 | 1 | 61 | 11 | 71 | 9.04e-25 | 95.1 |
| Msa0306820 | AT5G13790.2 | 76.667 | 60 | 14 | 0 | 1 | 60 | 1 | 60 | 2.27e-24 | 95.1 |
| Msa0306820 | AT5G13790.1 | 76.667 | 60 | 14 | 0 | 1 | 60 | 1 | 60 | 2.30e-24 | 95.1 |
| Msa0306820 | AT5G60910.1 | 65.217 | 69 | 24 | 0 | 1 | 69 | 1 | 69 | 3.37e-24 | 94.0 |
| Msa0306820 | AT3G30260.1 | 65.217 | 69 | 24 | 0 | 1 | 69 | 1 | 69 | 3.66e-24 | 94.0 |
| Msa0306820 | AT3G61120.1 | 72.881 | 59 | 16 | 0 | 1 | 59 | 1 | 59 | 5.65e-24 | 93.6 |
| Msa0306820 | AT1G69120.2 | 68.333 | 60 | 19 | 0 | 1 | 60 | 1 | 60 | 1.15e-23 | 92.4 |
| Msa0306820 | AT3G57230.2 | 67.188 | 64 | 21 | 0 | 1 | 64 | 1 | 64 | 1.75e-23 | 89.7 |
| Msa0306820 | AT1G69120.1 | 68.333 | 60 | 19 | 0 | 1 | 60 | 1 | 60 | 2.49e-23 | 92.0 |
| Msa0306820 | AT1G71692.1 | 67.797 | 59 | 19 | 0 | 1 | 59 | 1 | 59 | 3.84e-23 | 90.5 |
| Msa0306820 | AT3G57230.1 | 67.188 | 64 | 21 | 0 | 1 | 64 | 1 | 64 | 4.27e-23 | 90.9 |
| Msa0306820 | AT3G57230.4 | 67.188 | 64 | 21 | 0 | 1 | 64 | 1 | 64 | 4.27e-23 | 90.9 |
| Msa0306820 | AT2G14210.1 | 69.355 | 62 | 19 | 0 | 1 | 62 | 1 | 62 | 5.07e-23 | 90.9 |
| Msa0306820 | AT2G14210.2 | 69.355 | 62 | 19 | 0 | 1 | 62 | 1 | 62 | 5.11e-23 | 90.9 |
| Msa0306820 | AT2G22540.3 | 70.000 | 60 | 18 | 0 | 1 | 60 | 1 | 60 | 1.05e-22 | 90.1 |
| Msa0306820 | AT2G22540.1 | 70.000 | 60 | 18 | 0 | 1 | 60 | 1 | 60 | 1.05e-22 | 90.1 |
| Msa0306820 | AT1G26310.1 | 68.333 | 60 | 19 | 0 | 1 | 60 | 1 | 60 | 1.40e-22 | 90.1 |
| Msa0306820 | AT4G24540.1 | 55.422 | 83 | 33 | 1 | 1 | 79 | 1 | 83 | 1.66e-22 | 89.0 |
| Msa0306820 | AT4G37940.4 | 65.625 | 64 | 22 | 0 | 1 | 64 | 1 | 64 | 2.14e-22 | 88.6 |
| Msa0306820 | AT4G37940.3 | 65.625 | 64 | 22 | 0 | 1 | 64 | 1 | 64 | 2.20e-22 | 87.8 |
| Msa0306820 | AT3G57390.3 | 67.797 | 59 | 19 | 0 | 1 | 59 | 1 | 59 | 2.29e-22 | 89.0 |
| Msa0306820 | AT4G37940.1 | 65.625 | 64 | 22 | 0 | 1 | 64 | 1 | 64 | 2.34e-22 | 89.0 |
| Msa0306820 | AT3G57390.1 | 67.797 | 59 | 19 | 0 | 1 | 59 | 1 | 59 | 4.25e-22 | 88.6 |
| Msa0306820 | AT2G22540.2 | 53.247 | 77 | 36 | 0 | 1 | 77 | 1 | 77 | 1.80e-21 | 86.7 |
| Msa0306820 | AT5G23260.3 | 63.492 | 63 | 23 | 0 | 1 | 63 | 1 | 63 | 4.01e-21 | 85.9 |
| Msa0306820 | AT5G23260.2 | 63.492 | 63 | 23 | 0 | 1 | 63 | 1 | 63 | 4.10e-21 | 85.9 |
| Msa0306820 | AT3G54340.1 | 64.407 | 59 | 21 | 0 | 1 | 59 | 1 | 59 | 4.79e-21 | 85.5 |
| Msa0306820 | AT5G23260.4 | 63.492 | 63 | 23 | 0 | 1 | 63 | 17 | 79 | 4.94e-21 | 86.3 |
| Msa0306820 | AT5G23260.1 | 63.492 | 63 | 23 | 0 | 1 | 63 | 17 | 79 | 5.51e-21 | 85.9 |
| Msa0306820 | AT2G22630.1 | 62.500 | 64 | 24 | 0 | 1 | 64 | 1 | 64 | 6.06e-21 | 85.1 |
| Msa0306820 | AT2G22630.2 | 62.500 | 64 | 24 | 0 | 1 | 64 | 1 | 64 | 6.06e-21 | 85.1 |
| Msa0306820 | AT5G10140.2 | 59.420 | 69 | 28 | 0 | 1 | 69 | 1 | 69 | 3.01e-20 | 82.0 |
| Msa0306820 | AT5G10140.4 | 59.420 | 69 | 28 | 0 | 1 | 69 | 1 | 69 | 4.03e-20 | 82.0 |
| Msa0306820 | AT5G10140.1 | 59.420 | 69 | 28 | 0 | 1 | 69 | 1 | 69 | 4.58e-20 | 82.0 |
| Msa0306820 | AT5G10140.3 | 59.420 | 69 | 28 | 0 | 1 | 69 | 1 | 69 | 7.83e-20 | 81.3 |
| Msa0306820 | AT5G20240.2 | 59.322 | 59 | 24 | 0 | 1 | 59 | 1 | 59 | 1.77e-19 | 79.3 |
| Msa0306820 | AT5G20240.1 | 60.345 | 58 | 23 | 0 | 1 | 58 | 1 | 58 | 8.97e-19 | 79.0 |
| Msa0306820 | AT1G22130.1 | 63.793 | 58 | 21 | 0 | 1 | 58 | 1 | 58 | 2.04e-18 | 80.1 |
| Msa0306820 | AT1G77980.1 | 62.069 | 58 | 22 | 0 | 1 | 58 | 1 | 58 | 3.73e-18 | 79.3 |
| Msa0306820 | AT5G65070.4 | 59.322 | 59 | 24 | 0 | 1 | 59 | 1 | 59 | 6.95e-18 | 75.1 |
| Msa0306820 | AT5G65050.1 | 53.623 | 69 | 32 | 0 | 1 | 69 | 1 | 69 | 1.05e-17 | 75.5 |
| Msa0306820 | AT5G65050.2 | 53.623 | 69 | 32 | 0 | 1 | 69 | 1 | 69 | 1.21e-17 | 75.5 |
| Msa0306820 | AT5G65050.5 | 53.623 | 69 | 32 | 0 | 1 | 69 | 1 | 69 | 1.25e-17 | 75.5 |
| Msa0306820 | AT5G65050.3 | 53.623 | 69 | 32 | 0 | 1 | 69 | 1 | 69 | 1.44e-17 | 75.5 |
| Msa0306820 | AT5G65070.1 | 55.385 | 65 | 29 | 0 | 1 | 65 | 1 | 65 | 1.84e-17 | 75.5 |
| Msa0306820 | AT5G65070.5 | 55.385 | 65 | 29 | 0 | 1 | 65 | 1 | 65 | 2.99e-17 | 75.1 |
| Msa0306820 | AT5G65070.2 | 55.385 | 65 | 29 | 0 | 1 | 65 | 1 | 65 | 3.44e-17 | 75.5 |
| Msa0306820 | AT5G65070.3 | 59.322 | 59 | 24 | 0 | 1 | 59 | 1 | 59 | 5.65e-17 | 74.7 |
| Msa0306820 | AT5G65060.2 | 52.174 | 69 | 33 | 0 | 1 | 69 | 1 | 69 | 6.70e-17 | 73.6 |
| Msa0306820 | AT5G65060.1 | 52.174 | 69 | 33 | 0 | 1 | 69 | 1 | 69 | 6.89e-17 | 73.9 |
| Msa0306820 | AT5G65060.3 | 52.174 | 69 | 33 | 0 | 1 | 69 | 1 | 69 | 7.36e-17 | 73.6 |
| Msa0306820 | AT1G31140.1 | 49.315 | 73 | 34 | 1 | 1 | 73 | 1 | 70 | 2.95e-16 | 72.4 |
| Msa0306820 | AT1G77950.3 | 56.897 | 58 | 25 | 0 | 1 | 58 | 1 | 58 | 2.98e-16 | 73.2 |
| Msa0306820 | AT1G77950.2 | 56.897 | 58 | 25 | 0 | 1 | 58 | 1 | 58 | 2.98e-16 | 73.2 |
| Msa0306820 | AT1G77950.1 | 56.897 | 58 | 25 | 0 | 1 | 58 | 1 | 58 | 2.98e-16 | 73.2 |
| Msa0306820 | AT1G77950.4 | 56.897 | 58 | 25 | 0 | 1 | 58 | 1 | 58 | 2.98e-16 | 73.2 |
| Msa0306820 | AT1G31140.2 | 49.315 | 73 | 34 | 1 | 1 | 73 | 1 | 70 | 3.25e-16 | 72.4 |
| Msa0306820 | AT1G01530.1 | 58.182 | 55 | 23 | 0 | 3 | 57 | 8 | 62 | 5.42e-15 | 69.7 |
| Msa0306820 | AT4G37435.1 | 53.333 | 60 | 28 | 0 | 1 | 60 | 1 | 60 | 1.55e-14 | 67.4 |
| Msa0306820 | AT5G65080.3 | 50.769 | 65 | 32 | 0 | 1 | 65 | 8 | 72 | 2.80e-14 | 67.0 |
| Msa0306820 | AT3G66656.1 | 52.632 | 57 | 27 | 0 | 1 | 57 | 1 | 57 | 2.93e-14 | 66.6 |
| Msa0306820 | AT5G60440.1 | 48.684 | 76 | 38 | 1 | 3 | 78 | 8 | 82 | 5.42e-14 | 67.4 |
| Msa0306820 | AT5G65080.2 | 54.237 | 59 | 27 | 0 | 1 | 59 | 8 | 66 | 6.00e-14 | 66.2 |
| Msa0306820 | AT1G18750.4 | 48.387 | 62 | 32 | 0 | 1 | 62 | 1 | 62 | 8.55e-14 | 67.4 |
| Msa0306820 | AT1G18750.1 | 48.387 | 62 | 32 | 0 | 1 | 62 | 1 | 62 | 9.60e-14 | 67.4 |
| Msa0306820 | AT1G18750.3 | 48.387 | 62 | 32 | 0 | 1 | 62 | 1 | 62 | 9.79e-14 | 67.4 |
| Msa0306820 | AT2G34440.1 | 50.877 | 57 | 28 | 0 | 1 | 57 | 1 | 57 | 1.06e-13 | 65.1 |
| Msa0306820 | AT4G36590.1 | 58.182 | 55 | 23 | 0 | 3 | 57 | 8 | 62 | 1.42e-13 | 65.9 |
| Msa0306820 | AT2G03060.3 | 53.846 | 52 | 24 | 0 | 1 | 52 | 1 | 52 | 3.39e-13 | 65.9 |
| Msa0306820 | AT2G03060.7 | 53.846 | 52 | 24 | 0 | 1 | 52 | 1 | 52 | 3.39e-13 | 65.9 |
| Msa0306820 | AT2G03060.1 | 53.846 | 52 | 24 | 0 | 1 | 52 | 1 | 52 | 3.39e-13 | 65.9 |
| Msa0306820 | AT2G03060.2 | 53.846 | 52 | 24 | 0 | 1 | 52 | 1 | 52 | 3.85e-13 | 65.5 |
| Msa0306820 | AT1G72350.1 | 55.000 | 60 | 27 | 0 | 3 | 62 | 44 | 103 | 9.38e-13 | 63.2 |
| Msa0306820 | AT1G69540.1 | 51.923 | 52 | 25 | 0 | 1 | 52 | 1 | 52 | 1.21e-12 | 63.9 |
| Msa0306820 | AT1G69540.2 | 51.923 | 52 | 25 | 0 | 1 | 52 | 1 | 52 | 1.23e-12 | 63.9 |
| Msa0306820 | AT1G77080.11 | 53.623 | 69 | 32 | 0 | 1 | 69 | 1 | 69 | 1.61e-12 | 62.0 |
| Msa0306820 | AT1G77080.4 | 53.623 | 69 | 32 | 0 | 1 | 69 | 1 | 69 | 1.63e-12 | 62.4 |
| Msa0306820 | AT1G77080.5 | 53.623 | 69 | 32 | 0 | 1 | 69 | 1 | 69 | 1.87e-12 | 61.6 |
| Msa0306820 | AT1G65360.1 | 49.091 | 55 | 28 | 0 | 3 | 57 | 8 | 62 | 1.97e-12 | 62.4 |
| Msa0306820 | AT1G77080.8 | 53.623 | 69 | 32 | 0 | 1 | 69 | 1 | 69 | 3.28e-12 | 62.0 |
| Msa0306820 | AT2G24840.1 | 54.545 | 55 | 25 | 0 | 3 | 57 | 64 | 118 | 4.63e-12 | 62.0 |
| Msa0306820 | AT1G77080.12 | 57.627 | 59 | 25 | 0 | 1 | 59 | 1 | 59 | 5.32e-12 | 60.1 |
| Msa0306820 | AT1G77080.2 | 57.627 | 59 | 25 | 0 | 1 | 59 | 1 | 59 | 9.55e-12 | 60.1 |
| Msa0306820 | AT3G04100.1 | 45.614 | 57 | 31 | 0 | 3 | 59 | 15 | 71 | 2.26e-11 | 59.3 |
Find 45 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAAAATGGGTCAATTTC+CGG | 0.245887 | 2_3:-65962376 | None:intergenic |
| CAAAGAAAATATATGTATAA+AGG | 0.264770 | 2_3:-65959479 | None:intergenic |
| TCCATTGTCTTCTCCGATCT+TGG | 0.285800 | 2_3:-65962208 | None:intergenic |
| TCATGATGCCTCCACCAATT+TGG | 0.289507 | 2_3:+65962178 | Msa0306820:CDS |
| CTCGTAAGATCGTACGATCT+TGG | 0.325288 | 2_3:-65962155 | None:intergenic |
| ATCTTGGACCCGCTCCAAAT+TGG | 0.331494 | 2_3:-65962192 | None:intergenic |
| GTGCCTAGAATAGGAAAATA+AGG | 0.334290 | 2_3:-65959453 | None:intergenic |
| GAAACAGATATGCACCAAAT+TGG | 0.350438 | 2_3:-65959508 | None:intergenic |
| CAAAAGTTGCGGGTCGAAAC+CGG | 0.380011 | 2_3:-65962331 | None:intergenic |
| TAGAAAATGAATAAGAGTTA+AGG | 0.399824 | 2_3:-65959420 | None:intergenic |
| AAAGAAAATATATGTATAAA+GGG | 0.409393 | 2_3:-65959478 | None:intergenic |
| TCGTAAGATCGTACGATCTT+GGG | 0.412469 | 2_3:-65962154 | None:intergenic |
| TAAAGGGTTGTGCCTAGAAT+AGG | 0.448557 | 2_3:-65959462 | None:intergenic |
| GCAAGAAAAGCAATTTCAAA+AGG | 0.455026 | 2_3:-65959530 | None:intergenic |
| GGCGCACCGCGGAAGAGCGC+CGG | 0.479054 | 2_3:+65962237 | Msa0306820:CDS |
| CGCAATCCGGCGCTCTTCCG+CGG | 0.482947 | 2_3:-65962243 | None:intergenic |
| CGCGGAAGAGCGCCGGATTG+CGG | 0.492698 | 2_3:+65962244 | Msa0306820:CDS |
| AAAACGCAAATTCCGCAATC+CGG | 0.495753 | 2_3:-65962256 | None:intergenic |
| GTTCCGTGGTCAAAAGTTGC+GGG | 0.500654 | 2_3:-65962341 | None:intergenic |
| TTGGACCCGCTCCAAATTGG+TGG | 0.511517 | 2_3:-65962189 | None:intergenic |
| TTTATGAATTTGCTAGCTCT+AGG | 0.521973 | 2_3:+65960189 | Msa0306820:CDS |
| AATTCATAAAGCGTCCCTCT+TGG | 0.530716 | 2_3:-65960176 | None:intergenic |
| ATAGGAAAATAAGGAAGGGA+AGG | 0.533757 | 2_3:-65959444 | None:intergenic |
| ATTTGGAGCGGGTCCAAGAT+CGG | 0.541544 | 2_3:+65962195 | Msa0306820:CDS |
| ACATTCTCAAAGAGAAGAAG+TGG | 0.544843 | 2_3:+65960086 | Msa0306820:CDS |
| ATCGGAGAAGACAATGGAGC+AGG | 0.547157 | 2_3:+65962213 | Msa0306820:CDS |
| TGCCTCCACCAATTTGGAGC+GGG | 0.555647 | 2_3:+65962184 | Msa0306820:CDS |
| AAAAGTTGCGGGTCGAAACC+GGG | 0.556154 | 2_3:-65962330 | None:intergenic |
| CTAGAATAGGAAAATAAGGA+AGG | 0.556487 | 2_3:-65959449 | None:intergenic |
| ACGGAACTAGTCCGTTCTGC+CGG | 0.558362 | 2_3:+65962357 | Msa0306820:CDS |
| TAGGAAAATAAGGAAGGGAA+GGG | 0.573461 | 2_3:-65959443 | None:intergenic |
| ACACAACACTGATAATTCAA+AGG | 0.574104 | 2_3:-65960123 | None:intergenic |
| GACCCGCTCCAAATTGGTGG+AGG | 0.576563 | 2_3:-65962186 | None:intergenic |
| AGTTCCGTGGTCAAAAGTTG+CGG | 0.584275 | 2_3:-65962342 | None:intergenic |
| ATCAGTGTTGTGTGATGCTG+AGG | 0.585355 | 2_3:+65960133 | Msa0306820:CDS |
| TGGGTCAATTTCCGGCAGAA+CGG | 0.603347 | 2_3:-65962368 | None:intergenic |
| TAGAATAGGAAAATAAGGAA+GGG | 0.610409 | 2_3:-65959448 | None:intergenic |
| TCCAAGATCGGAGAAGACAA+TGG | 0.640459 | 2_3:+65962207 | Msa0306820:CDS |
| GTATAGAGAACGCAACAAGT+AGG | 0.642404 | 2_3:+65960057 | Msa0306820:CDS |
| GGAGAAGACAATGGAGCAGG+TGG | 0.645086 | 2_3:+65962216 | Msa0306820:CDS |
| TACAGTCTGATAATCCGACC+CGG | 0.646591 | 2_3:+65962312 | Msa0306820:CDS |
| GGCAGAACGGACTAGTTCCG+TGG | 0.649424 | 2_3:-65962355 | None:intergenic |
| ATGCCTCCACCAATTTGGAG+CGG | 0.658527 | 2_3:+65962183 | Msa0306820:CDS |
| GTTGCGGGTCGAAACCGGGT+CGG | 0.683450 | 2_3:-65962326 | None:intergenic |
| ATGGAGCAGGTGGCGCACCG+CGG | 0.699229 | 2_3:+65962226 | Msa0306820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAATATATGTATAAA+GGG | - | chr2_3:65959481-65959500 | None:intergenic | 10.0% |
| !! | AATATTAATCATTTGAAAAA+TGG | - | chr2_3:65961004-65961023 | None:intergenic | 10.0% |
| !! | TAATATTTCATAGATATATA+AGG | - | chr2_3:65961720-65961739 | None:intergenic | 10.0% |
| !!! | TAAGGATATTTTTATATTTT+GGG | + | chr2_3:65961836-65961855 | Msa0306820:intron | 10.0% |
| !!! | GTTTAGTTTTTATTTTTTTA+AGG | + | chr2_3:65961858-65961877 | Msa0306820:intron | 10.0% |
| !! | CAAAGAAAATATATGTATAA+AGG | - | chr2_3:65959482-65959501 | None:intergenic | 15.0% |
| !!! | TATTTGATGACTAAATTAAA+TGG | - | chr2_3:65959644-65959663 | None:intergenic | 15.0% |
| !!! | TTTTTGTTATGAATTGAAAT+AGG | + | chr2_3:65959904-65959923 | Msa0306820:intron | 15.0% |
| !! | TGGTATAATTTATTTATCAA+GGG | + | chr2_3:65960277-65960296 | Msa0306820:intron | 15.0% |
| !! | ATTAGATCTATTAAAAATCA+AGG | - | chr2_3:65960610-65960629 | None:intergenic | 15.0% |
| !!! | TCCTTTTAATATTATAAACA+AGG | + | chr2_3:65960695-65960714 | Msa0306820:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGCTG+AGG | + | chr2_3:65960838-65960857 | Msa0306820:intron | 15.0% |
| !!! | TATCTTTTGTTTTTGTTTAT+AGG | - | chr2_3:65961112-65961131 | None:intergenic | 15.0% |
| !!! | ATGTTGTTAAATTTTGATTT+TGG | - | chr2_3:65961464-65961483 | None:intergenic | 15.0% |
| !! | TTAAAATTATCTCTATTTGA+TGG | - | chr2_3:65961513-65961532 | None:intergenic | 15.0% |
| !!! | GTAAGGATATTTTTATATTT+TGG | + | chr2_3:65961835-65961854 | Msa0306820:intron | 15.0% |
| !! | ACACTATTAATTATTTAATG+TGG | - | chr2_3:65961991-65962010 | None:intergenic | 15.0% |
| !! | TAGAAAATGAATAAGAGTTA+AGG | - | chr2_3:65959423-65959442 | None:intergenic | 20.0% |
| !!! | CTTTTCTGATTAATTGATAT+AGG | - | chr2_3:65959568-65959587 | None:intergenic | 20.0% |
| !! | AAAAGCTCTTAAATCTTTAT+AGG | + | chr2_3:65959583-65959602 | Msa0306820:intron | 20.0% |
| !! | AAACAAGAACAACATAAATT+AGG | - | chr2_3:65959980-65959999 | None:intergenic | 20.0% |
| !! | AGCAAAGAAAAGAAAAAAAA+TGG | + | chr2_3:65960010-65960029 | Msa0306820:intron | 20.0% |
| !! | CTGGTATAATTTATTTATCA+AGG | + | chr2_3:65960276-65960295 | Msa0306820:intron | 20.0% |
| !! | GAGATAACATATTTAATAGA+AGG | - | chr2_3:65960677-65960696 | None:intergenic | 20.0% |
| !!! | GCCTTGTTTATAATATTAAA+AGG | - | chr2_3:65960699-65960718 | None:intergenic | 20.0% |
| !! | ATTATAAACAAGGCTTAAAT+AGG | + | chr2_3:65960705-65960724 | Msa0306820:intron | 20.0% |
| !!! | AATATTAGTCATTTGACTTT+TGG | + | chr2_3:65960803-65960822 | Msa0306820:intron | 20.0% |
| !!! | TTTTGTTTATAGGCTTAAAT+AGG | - | chr2_3:65961102-65961121 | None:intergenic | 20.0% |
| !!! | TTTAAACTCTAAAGTTAATG+TGG | + | chr2_3:65961192-65961211 | Msa0306820:intron | 20.0% |
| !! | GAAATAAATCTCACATAAAA+TGG | - | chr2_3:65961226-65961245 | None:intergenic | 20.0% |
| !!! | GCTTTATGTACTTTTTTTAA+TGG | - | chr2_3:65961417-65961436 | None:intergenic | 20.0% |
| !!! | TTAAATTTTGATTTTGGTCT+TGG | - | chr2_3:65961458-65961477 | None:intergenic | 20.0% |
| !!! | TAGGATACTATTTAATTTCA+TGG | - | chr2_3:65961538-65961557 | None:intergenic | 20.0% |
| !! | CTTAATGTAACTTAATGTTA+TGG | - | chr2_3:65961572-65961591 | None:intergenic | 20.0% |
| !! | TAAATATTCACAGATATTGT+AGG | - | chr2_3:65961792-65961811 | None:intergenic | 20.0% |
| !! | ATCTGTGAATATTTATACTT+TGG | + | chr2_3:65961797-65961816 | Msa0306820:intron | 20.0% |
| !! | TCTGTGAATATTTATACTTT+GGG | + | chr2_3:65961798-65961817 | Msa0306820:intron | 20.0% |
| !! | TATAACATATATATGATGCA+GGG | + | chr2_3:65961924-65961943 | Msa0306820:intron | 20.0% |
| ! | TAGAATAGGAAAATAAGGAA+GGG | - | chr2_3:65959451-65959470 | None:intergenic | 25.0% |
| !!! | TTTCTTTGATTTTGCCAATT+TGG | + | chr2_3:65959494-65959513 | Msa0306820:five_prime_UTR | 25.0% |
| ! | AAATAGCTTCCTAGAAAAAA+GGG | - | chr2_3:65959617-65959636 | None:intergenic | 25.0% |
| ! | AAAATAGCTTCCTAGAAAAA+AGG | - | chr2_3:65959618-65959637 | None:intergenic | 25.0% |
| ! | GATGAAAGAAACAAAGAAAT+GGG | - | chr2_3:65959693-65959712 | None:intergenic | 25.0% |
| ! | AGGAACAAAAATTCTTAGAA+GGG | - | chr2_3:65959732-65959751 | None:intergenic | 25.0% |
| ! | AAGGAACAAAAATTCTTAGA+AGG | - | chr2_3:65959733-65959752 | None:intergenic | 25.0% |
| !! | TCTAAGAATTTTTGTTCCTT+TGG | + | chr2_3:65959733-65959752 | Msa0306820:intron | 25.0% |
| !!! | TTTTGTTCCTTTGGTTTTAT+TGG | + | chr2_3:65959742-65959761 | Msa0306820:intron | 25.0% |
| !!! | TTTGTTCCTTTGGTTTTATT+GGG | + | chr2_3:65959743-65959762 | Msa0306820:intron | 25.0% |
| ! | TCTAGAAAGTTATGGAAAAA+TGG | - | chr2_3:65959810-65959829 | None:intergenic | 25.0% |
| !!! | CTTTAAGATCTAGAAAGTTA+TGG | - | chr2_3:65959818-65959837 | None:intergenic | 25.0% |
| ! | CATAACTTTCTAGATCTTAA+AGG | + | chr2_3:65959816-65959835 | Msa0306820:intron | 25.0% |
| ! | TTTAAACCTTGTAAGGAAAA+GGG | - | chr2_3:65959855-65959874 | None:intergenic | 25.0% |
| ! | ATTTAAACCTTGTAAGGAAA+AGG | - | chr2_3:65959856-65959875 | None:intergenic | 25.0% |
| ! | AACACAATTTAAACCTTGTA+AGG | - | chr2_3:65959862-65959881 | None:intergenic | 25.0% |
| !! | TAAATTGTGTTTTTCCTTCT+TGG | + | chr2_3:65959871-65959890 | Msa0306820:intron | 25.0% |
| ! | AAAAGAAAAAAAATGGTGAG+AGG | + | chr2_3:65960017-65960036 | Msa0306820:exon | 25.0% |
| ! | AGTGTAAAGATATGTTAGTA+AGG | - | chr2_3:65960482-65960501 | None:intergenic | 25.0% |
| ! | AGTCAAATGACTAATATTTG+CGG | - | chr2_3:65960801-65960820 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTTTGCTGAGG+TGG | + | chr2_3:65960841-65960860 | Msa0306820:intron | 25.0% |
| !!! | TTTTTTTTTTTTGCTGAGGT+GGG | + | chr2_3:65960842-65960861 | Msa0306820:intron | 25.0% |
| ! | CAAATGATTAATATTTGCAG+TGG | + | chr2_3:65961009-65961028 | Msa0306820:intron | 25.0% |
| ! | TACGATTACAAAGATTACAA+CGG | + | chr2_3:65961130-65961149 | Msa0306820:intron | 25.0% |
| ! | AATATGTATGTCTTACATGT+TGG | - | chr2_3:65961248-65961267 | None:intergenic | 25.0% |
| ! | TGGATAAGATTTAAGAAATC+TGG | - | chr2_3:65961380-65961399 | None:intergenic | 25.0% |
| !!! | TAATGGTTTTGTTGAGTTTA+TGG | - | chr2_3:65961400-65961419 | None:intergenic | 25.0% |
| ! | ATTATTATCTGCACTACATA+AGG | + | chr2_3:65961752-65961771 | Msa0306820:intron | 25.0% |
| !!! | GGGTTTATTTTTTCTTAGTA+AGG | + | chr2_3:65961818-65961837 | Msa0306820:intron | 25.0% |
| ! | CTGCATCATATATATGTTAT+AGG | - | chr2_3:65961925-65961944 | None:intergenic | 25.0% |
| ! | CTATAACATATATATGATGC+AGG | + | chr2_3:65961923-65961942 | Msa0306820:intron | 25.0% |
| !!! | TGATCACAATTTTTTTAGCA+TGG | + | chr2_3:65962010-65962029 | Msa0306820:intron | 25.0% |
| ! | TTTATGTAAAAGATAGCCTT+CGG | - | chr2_3:65962063-65962082 | None:intergenic | 25.0% |
| CTAGAATAGGAAAATAAGGA+AGG | - | chr2_3:65959452-65959471 | None:intergenic | 30.0% | |
| !!! | CTTCCTTATTTTCCTATTCT+AGG | + | chr2_3:65959450-65959469 | Msa0306820:five_prime_UTR | 30.0% |
| GCAAGAAAAGCAATTTCAAA+AGG | - | chr2_3:65959533-65959552 | None:intergenic | 30.0% | |
| !! | TTTGAAATTGCTTTTCTTGC+TGG | + | chr2_3:65959533-65959552 | Msa0306820:five_prime_UTR | 30.0% |
| GGATGAAAGAAACAAAGAAA+TGG | - | chr2_3:65959694-65959713 | None:intergenic | 30.0% | |
| AAAAAAAGTTCTCACCAAGA+AGG | - | chr2_3:65959888-65959907 | None:intergenic | 30.0% | |
| ACACAACACTGATAATTCAA+AGG | - | chr2_3:65960126-65960145 | None:intergenic | 30.0% | |
| ! | TTATTGTTTTCTCACCAAGA+GGG | + | chr2_3:65960162-65960181 | Msa0306820:CDS | 30.0% |
| !! | TTTATGAATTTGCTAGCTCT+AGG | + | chr2_3:65960189-65960208 | Msa0306820:CDS | 30.0% |
| TTGTGTGATTATATTGCATC+TGG | + | chr2_3:65960257-65960276 | Msa0306820:intron | 30.0% | |
| AGAAGTGAGAGAAAGAAAAT+AGG | + | chr2_3:65960382-65960401 | Msa0306820:intron | 30.0% | |
| !!! | TTTGACTTTTGGTTCTAACT+AGG | + | chr2_3:65960814-65960833 | Msa0306820:intron | 30.0% |
| TCAAATGACCTATATTTGCA+GGG | - | chr2_3:65960942-65960961 | None:intergenic | 30.0% | |
| TTCAAATGACCTATATTTGC+AGG | - | chr2_3:65960943-65960962 | None:intergenic | 30.0% | |
| ACATCTGATTAGTAACTTCA+GGG | - | chr2_3:65960973-65960992 | None:intergenic | 30.0% | |
| TACATCTGATTAGTAACTTC+AGG | - | chr2_3:65960974-65960993 | None:intergenic | 30.0% | |
| TTCAAATAGCCTATATTTGC+AGG | + | chr2_3:65961067-65961086 | Msa0306820:intron | 30.0% | |
| TCAAATAGCCTATATTTGCA+GGG | + | chr2_3:65961068-65961087 | Msa0306820:intron | 30.0% | |
| ATTACACTCAACAAGAAAGA+TGG | + | chr2_3:65961269-65961288 | Msa0306820:intron | 30.0% | |
| TTACACTCAACAAGAAAGAT+GGG | + | chr2_3:65961270-65961289 | Msa0306820:intron | 30.0% | |
| TGTAACTTAATGTTATGGTG+TGG | - | chr2_3:65961567-65961586 | None:intergenic | 30.0% | |
| ACATTAAGTTAAACTAGCAC+AGG | + | chr2_3:65961584-65961603 | Msa0306820:intron | 30.0% | |
| CATACACAGTTAATTTAGAG+AGG | + | chr2_3:65961688-65961707 | Msa0306820:intron | 30.0% | |
| ATATTCACAGATATTGTAGG+AGG | - | chr2_3:65961789-65961808 | None:intergenic | 30.0% | |
| GATGCAGGGTTTAAAAAAAA+TGG | + | chr2_3:65961938-65961957 | Msa0306820:intron | 30.0% | |
| TAGGAAAATAAGGAAGGGAA+GGG | - | chr2_3:65959446-65959465 | None:intergenic | 35.0% | |
| ATAGGAAAATAAGGAAGGGA+AGG | - | chr2_3:65959447-65959466 | None:intergenic | 35.0% | |
| GTGCCTAGAATAGGAAAATA+AGG | - | chr2_3:65959456-65959475 | None:intergenic | 35.0% | |
| GAAACAGATATGCACCAAAT+TGG | - | chr2_3:65959511-65959530 | None:intergenic | 35.0% | |
| !!! | GTGTTTAGACCCTTTTTTCT+AGG | + | chr2_3:65959605-65959624 | Msa0306820:intron | 35.0% |
| !! | GAAGGGTGTTTGAAATATGA+AGG | - | chr2_3:65959715-65959734 | None:intergenic | 35.0% |
| TTACCACCCAATAAAACCAA+AGG | - | chr2_3:65959752-65959771 | None:intergenic | 35.0% | |
| ! | TTTCATCCCTTTTCCTTACA+AGG | + | chr2_3:65959846-65959865 | Msa0306820:intron | 35.0% |
| ACATTCTCAAAGAGAAGAAG+TGG | + | chr2_3:65960086-65960105 | Msa0306820:CDS | 35.0% | |
| ! | CTTATTGTTTTCTCACCAAG+AGG | + | chr2_3:65960161-65960180 | Msa0306820:CDS | 35.0% |
| TCAAATGGCCTATATTTGCA+GGG | - | chr2_3:65960739-65960758 | None:intergenic | 35.0% | |
| TTCAAATGGCCTATATTTGC+AGG | - | chr2_3:65960740-65960759 | None:intergenic | 35.0% | |
| TTCAGGGACGAAAATTCAAA+TGG | - | chr2_3:65961053-65961072 | None:intergenic | 35.0% | |
| CAAATGACTAATATTTGCGG+TGG | - | chr2_3:65960798-65960817 | None:intergenic | 35.0% | |
| TAATATTTGCAGTGGCAGAT+TGG | + | chr2_3:65961017-65961036 | Msa0306820:intron | 35.0% | |
| ! | TTGGAAGGATTAGTAACTTC+AGG | + | chr2_3:65961036-65961055 | Msa0306820:intron | 35.0% |
| ! | TGGAAGGATTAGTAACTTCA+GGG | + | chr2_3:65961037-65961056 | Msa0306820:intron | 35.0% |
| TATTTCGTCCCTGCAAATAT+AGG | - | chr2_3:65961079-65961098 | None:intergenic | 35.0% | |
| TACACTCAACAAGAAAGATG+GGG | + | chr2_3:65961271-65961290 | Msa0306820:intron | 35.0% | |
| ACTAACGTAAACACTAGTCA+CGG | - | chr2_3:65961341-65961360 | None:intergenic | 35.0% | |
| ! | TAGTGTTTACGTTAGTTTCC+AGG | + | chr2_3:65961345-65961364 | Msa0306820:intron | 35.0% |
| ! | AGTGTTTACGTTAGTTTCCA+GGG | + | chr2_3:65961346-65961365 | Msa0306820:intron | 35.0% |
| AACTTAATGTTATGGTGTGG+AGG | - | chr2_3:65961564-65961583 | None:intergenic | 35.0% | |
| !!! | AAAGATCTCTGCTGATTTTG+TGG | + | chr2_3:65961961-65961980 | Msa0306820:intron | 35.0% |
| !! | TTTTTAGCATGGCATGATCA+AGG | + | chr2_3:65962021-65962040 | Msa0306820:intron | 35.0% |
| AGTATGAACTTGCATCAAAG+TGG | + | chr2_3:65962088-65962107 | Msa0306820:intron | 35.0% | |
| CGATCTTGACAACAATGATT+GGG | - | chr2_3:65962124-65962143 | None:intergenic | 35.0% | |
| !!! | TTGCGTTTTTTTTTCACGTC+AGG | + | chr2_3:65962270-65962289 | Msa0306820:CDS | 35.0% |
| !!! | TGCGTTTTTTTTTCACGTCA+GGG | + | chr2_3:65962271-65962290 | Msa0306820:CDS | 35.0% |
| TAAAGGGTTGTGCCTAGAAT+AGG | - | chr2_3:65959465-65959484 | None:intergenic | 40.0% | |
| !!! | GTTCCTTTGGTTTTATTGGG+TGG | + | chr2_3:65959746-65959765 | Msa0306820:intron | 40.0% |
| GTATAGAGAACGCAACAAGT+AGG | + | chr2_3:65960057-65960076 | Msa0306820:CDS | 40.0% | |
| ! | AATTCATAAAGCGTCCCTCT+TGG | - | chr2_3:65960179-65960198 | None:intergenic | 40.0% |
| ! | TGGGAGGATTAGTAACTTCA+GGG | - | chr2_3:65960770-65960789 | None:intergenic | 40.0% |
| ! | TTGGGAGGATTAGTAACTTC+AGG | - | chr2_3:65960771-65960790 | None:intergenic | 40.0% |
| AATATTTGCGGTGGCAGATT+GGG | - | chr2_3:65960789-65960808 | None:intergenic | 40.0% | |
| TAATATTTGCGGTGGCAGAT+TGG | - | chr2_3:65960790-65960809 | None:intergenic | 40.0% | |
| TCTTTCGTCCCTGCAAATAT+AGG | + | chr2_3:65960931-65960950 | Msa0306820:intron | 40.0% | |
| CAGCACATCACATGTAGTTA+CGG | + | chr2_3:65961613-65961632 | Msa0306820:intron | 40.0% | |
| TCACAAACCATAATCTCCGA+AGG | + | chr2_3:65962044-65962063 | Msa0306820:intron | 40.0% | |
| AAGATAGCCTTCGGAGATTA+TGG | - | chr2_3:65962054-65962073 | None:intergenic | 40.0% | |
| GCGATCTTGACAACAATGAT+TGG | - | chr2_3:65962125-65962144 | None:intergenic | 40.0% | |
| TCGTAAGATCGTACGATCTT+GGG | - | chr2_3:65962157-65962176 | None:intergenic | 40.0% | |
| AAAACGCAAATTCCGCAATC+CGG | - | chr2_3:65962259-65962278 | None:intergenic | 40.0% | |
| !!! | TTTTTTCACGTCAGGGAATG+TGG | + | chr2_3:65962278-65962297 | Msa0306820:CDS | 40.0% |
| ATCAGTGTTGTGTGATGCTG+AGG | + | chr2_3:65960133-65960152 | Msa0306820:CDS | 45.0% | |
| TCTGTCGTCCCTGCAAATAT+AGG | + | chr2_3:65960728-65960747 | Msa0306820:intron | 45.0% | |
| CCAATCATCACTTGCCACAT+GGG | - | chr2_3:65960888-65960907 | None:intergenic | 45.0% | |
| CCATGTGGCAAGTGATGATT+GGG | + | chr2_3:65960886-65960905 | Msa0306820:intron | 45.0% | |
| ATTTGCAGTGGCAGATTGGA+AGG | + | chr2_3:65961021-65961040 | Msa0306820:intron | 45.0% | |
| GTAAACACTAGTCACGGAAG+AGG | - | chr2_3:65961335-65961354 | None:intergenic | 45.0% | |
| ! | GAAATCTGGAGTTAGAACCC+TGG | - | chr2_3:65961366-65961385 | None:intergenic | 45.0% |
| !! | TGTTATGGTGTGGAGGTACT+AGG | - | chr2_3:65961557-65961576 | None:intergenic | 45.0% |
| CTCGTAAGATCGTACGATCT+TGG | - | chr2_3:65962158-65962177 | None:intergenic | 45.0% | |
| TCATGATGCCTCCACCAATT+TGG | + | chr2_3:65962178-65962197 | Msa0306820:CDS | 45.0% | |
| TCCAAGATCGGAGAAGACAA+TGG | + | chr2_3:65962207-65962226 | Msa0306820:CDS | 45.0% | |
| TCCATTGTCTTCTCCGATCT+TGG | - | chr2_3:65962211-65962230 | None:intergenic | 45.0% | |
| !!! | TCAGGGAATGTGGTTTTGTC+TGG | + | chr2_3:65962288-65962307 | Msa0306820:CDS | 45.0% |
| TACAGTCTGATAATCCGACC+CGG | + | chr2_3:65962312-65962331 | Msa0306820:CDS | 45.0% | |
| AGTTCCGTGGTCAAAAGTTG+CGG | - | chr2_3:65962345-65962364 | None:intergenic | 45.0% | |
| CCCATGTGGCAAGTGATGAT+TGG | + | chr2_3:65960885-65960904 | Msa0306820:intron | 50.0% | |
| CCCAATCATCACTTGCCACA+TGG | - | chr2_3:65960889-65960908 | None:intergenic | 50.0% | |
| !! | GCGAGGTGGTTGGCTTAAAT+AGG | + | chr2_3:65960908-65960927 | Msa0306820:intron | 50.0% |
| ATGCCTCCACCAATTTGGAG+CGG | + | chr2_3:65962183-65962202 | Msa0306820:CDS | 50.0% | |
| ATCTTGGACCCGCTCCAAAT+TGG | - | chr2_3:65962195-65962214 | None:intergenic | 50.0% | |
| ! | ATTTGGAGCGGGTCCAAGAT+CGG | + | chr2_3:65962195-65962214 | Msa0306820:CDS | 50.0% |
| ATCGGAGAAGACAATGGAGC+AGG | + | chr2_3:65962213-65962232 | Msa0306820:CDS | 50.0% | |
| AAAAGTTGCGGGTCGAAACC+GGG | - | chr2_3:65962333-65962352 | None:intergenic | 50.0% | |
| CAAAAGTTGCGGGTCGAAAC+CGG | - | chr2_3:65962334-65962353 | None:intergenic | 50.0% | |
| GTTCCGTGGTCAAAAGTTGC+GGG | - | chr2_3:65962344-65962363 | None:intergenic | 50.0% | |
| ATTTGCGGTGGCAGATTGGG+AGG | - | chr2_3:65960786-65960805 | None:intergenic | 55.0% | |
| TGGCAAGTGATGATTGGGCG+AGG | + | chr2_3:65960891-65960910 | Msa0306820:intron | 55.0% | |
| CAAGTGATGATTGGGCGAGG+TGG | + | chr2_3:65960894-65960913 | Msa0306820:intron | 55.0% | |
| TGATGATTGGGCGAGGTGGT+TGG | + | chr2_3:65960898-65960917 | Msa0306820:intron | 55.0% | |
| ! | TGCCTCCACCAATTTGGAGC+GGG | + | chr2_3:65962184-65962203 | Msa0306820:CDS | 55.0% |
| TTGGACCCGCTCCAAATTGG+TGG | - | chr2_3:65962192-65962211 | None:intergenic | 55.0% | |
| GGAGAAGACAATGGAGCAGG+TGG | + | chr2_3:65962216-65962235 | Msa0306820:CDS | 55.0% | |
| ! | CGACCCGCAACTTTTGACCA+CGG | + | chr2_3:65962338-65962357 | Msa0306820:CDS | 55.0% |
| ACGGAACTAGTCCGTTCTGC+CGG | + | chr2_3:65962357-65962376 | Msa0306820:CDS | 55.0% | |
| ! | GTGGGCTGTCATTAGCGACG+TGG | + | chr2_3:65960860-65960879 | Msa0306820:intron | 60.0% |
| TTAGCGACGTGGTGCCCATG+TGG | + | chr2_3:65960871-65960890 | Msa0306820:intron | 60.0% | |
| GACCCGCTCCAAATTGGTGG+AGG | - | chr2_3:65962189-65962208 | None:intergenic | 60.0% | |
| !! | GGCAGAACGGACTAGTTCCG+TGG | - | chr2_3:65962358-65962377 | None:intergenic | 60.0% |
| GTTGCGGGTCGAAACCGGGT+CGG | - | chr2_3:65962329-65962348 | None:intergenic | 65.0% | |
| ATGGAGCAGGTGGCGCACCG+CGG | + | chr2_3:65962226-65962245 | Msa0306820:CDS | 70.0% | |
| CGCAATCCGGCGCTCTTCCG+CGG | - | chr2_3:65962246-65962265 | None:intergenic | 70.0% | |
| !! | CGCGGAAGAGCGCCGGATTG+CGG | + | chr2_3:65962244-65962263 | Msa0306820:CDS | 70.0% |
| !! | GGCGCACCGCGGAAGAGCGC+CGG | + | chr2_3:65962237-65962256 | Msa0306820:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 65959397 | 65962386 | 65959397 | ID=Msa0306820;Name=Msa0306820 |
| chr2_3 | mRNA | 65959397 | 65962386 | 65959397 | ID=Msa0306820-mRNA-1;Parent=Msa0306820;Name=Msa0306820-mRNA-1;_AED=0.42;_eAED=0.42;_QI=175|0.5|0.66|0.66|0.5|0.33|3|0|142 |
| chr2_3 | exon | 65959397 | 65959554 | 65959397 | ID=Msa0306820-mRNA-1:exon:21971;Parent=Msa0306820-mRNA-1 |
| chr2_3 | exon | 65960012 | 65960210 | 65960012 | ID=Msa0306820-mRNA-1:exon:21972;Parent=Msa0306820-mRNA-1 |
| chr2_3 | exon | 65962140 | 65962386 | 65962140 | ID=Msa0306820-mRNA-1:exon:21973;Parent=Msa0306820-mRNA-1 |
| chr2_3 | five_prime_UTR | 65959397 | 65959554 | 65959397 | ID=Msa0306820-mRNA-1:five_prime_utr;Parent=Msa0306820-mRNA-1 |
| chr2_3 | five_prime_UTR | 65960012 | 65960028 | 65960012 | ID=Msa0306820-mRNA-1:five_prime_utr;Parent=Msa0306820-mRNA-1 |
| chr2_3 | CDS | 65960029 | 65960210 | 65960029 | ID=Msa0306820-mRNA-1:cds;Parent=Msa0306820-mRNA-1 |
| chr2_3 | CDS | 65962140 | 65962386 | 65962140 | ID=Msa0306820-mRNA-1:cds;Parent=Msa0306820-mRNA-1 |
| Gene Sequence |
| Protein sequence |