AlfalfaGEDB | Msa1185310

M. sativa cultivar zhongmu-4 / Msa1185310

KEGG: K09260
GO: GO:0000003 GO:0000060 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008134 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0017038 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034504 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1185310	XP_013444984.1	95.536	224	10	0	1	224	1	224	3.99e-152	431

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1185310	sp\|O64645\|SOC1_ARATH	64.186	215	69	3	1	213	1	209	3.99e-89	264

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1185310	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0306810	Msa1185310	0.837425	5.238745e-57	-8.615850e-47
Msa0306820	Msa1185310	0.839117	1.919077e-57	-8.615850e-47
Msa0306830	Msa1185310	0.872227	3.739971e-67	-8.615850e-47
Msa1037620	Msa1185310	0.810370	1.192352e-50	-8.615850e-47
Msa1130300	Msa1185310	0.816488	5.390036e-52	-8.615850e-47
Msa1185310	Msa1185320	0.871875	4.895935e-67	-8.615850e-47
Msa1185310	Msa1239310	0.809542	1.796981e-50	-8.615850e-47
Msa1185310	Msa1239320	0.841566	4.396758e-58	-8.615850e-47
Msa1185310	Msa1239330	0.840390	8.951788e-58	-8.615850e-47
Msa1185310	Msa1319930	0.842019	3.338241e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1185310	MtrunA17_Chr8g0351031	95.536	224	10	0	1	224	1	224	3.67e-156	431
Msa1185310	MtrunA17_Chr8g0351041	92.547	161	12	0	1	161	1	161	1.51e-105	301
Msa1185310	MtrunA17_Chr7g0246431	67.606	213	63	4	1	212	1	208	1.17e-94	275
Msa1185310	MtrunA17_Chr4g0057151	57.604	217	77	4	1	216	1	203	1.86e-76	229
Msa1185310	MtrunA17_Chr3g0097101	43.396	212	112	3	1	210	16	221	1.64e-50	164
Msa1185310	MtrunA17_Chr2g0284911	49.112	169	85	1	3	171	18	185	4.37e-49	161
Msa1185310	MtrunA17_Chr8g0351051	42.466	219	116	3	1	210	1	218	7.46e-48	157
Msa1185310	MtrunA17_Chr3g0077501	47.368	171	89	1	1	171	1	170	2.64e-47	155
Msa1185310	MtrunA17_Chr8g0366231	50.296	169	82	2	1	168	1	168	1.53e-46	154
Msa1185310	MtrunA17_Chr4g0061691	48.235	170	86	2	1	169	1	169	5.41e-45	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1185310	AT2G45660.1	64.186	215	69	3	1	213	1	209	4.06e-90	264
Msa1185310	AT2G45660.2	73.292	161	38	2	1	159	1	158	2.26e-79	235
Msa1185310	AT4G22950.3	57.143	224	89	4	1	223	1	218	3.48e-77	232
Msa1185310	AT4G22950.1	57.143	224	89	4	1	223	1	218	3.48e-77	232
Msa1185310	AT4G22950.2	65.497	171	57	1	1	171	1	169	1.21e-73	221
Msa1185310	AT5G62165.3	54.460	213	90	3	1	213	1	206	1.25e-73	222
Msa1185310	AT5G62165.1	54.460	213	90	3	1	213	1	206	1.25e-73	222
Msa1185310	AT5G62165.2	54.460	213	90	3	1	213	1	206	1.25e-73	222
Msa1185310	AT4G11880.4	56.951	223	90	3	1	222	1	218	1.32e-69	213
Msa1185310	AT4G11880.1	56.951	223	90	3	1	222	1	218	1.32e-69	213

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Find 43 sgRNAs with CRISPR-Local

Find 1007 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTTAGGAGAAGGTCT+AGG	0.447821	8_1:-22326477	Msa1185310:CDS
AAAGAAAATATATGTATAAA+GGG	0.409393	8_1:+22338692	None:intergenic
AAATGCCATGCTCACAGAGA+AGG	0.595558	8_1:-22325778	Msa1185310:intron
AACGATACCGCAGTCATTCC+AGG	0.370506	8_1:-22328182	Msa1185310:CDS
AACTCTTAGGAGAAGGTCTA+GGG	0.544433	8_1:-22326476	Msa1185310:CDS
AAGTAGTCCAAGTTCAGATG+TGG	0.602735	8_1:-22325363	Msa1185310:CDS
AATTCATAAAGCGTCCCTCT+TGG	0.530716	8_1:+22337997	None:intergenic
AATTGAGCAGCTAAAGGAAA+AGG	0.487373	8_1:-22326280	Msa1185310:intron
ACACAACACTGATAATTCAA+AGG	0.574514	8_1:+22338050	None:intergenic
ACATTCTCAAAGAGAAGAAG+TGG	0.544843	8_1:-22338087	Msa1185310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAGAATAGGAAAATAAGGA+AGG	+	chr8_1:22325356-22325375	None:intergenic	30.0%
GCAAGAAAAGCAATTTCAAA+AGG	+	chr8_1:22325437-22325456	None:intergenic	30.0%
GGATGAAAGAAACAAAGAAA+TGG	+	chr8_1:22325598-22325617	None:intergenic	30.0%
AAAAAAAGTTCTCACCAAGA+AGG	+	chr8_1:22325792-22325811	None:intergenic	30.0%
ACACAACACTGATAATTCAA+AGG	+	chr8_1:22326027-22326046	None:intergenic	30.0%
TTGTGTGATTATATTGCATC+TGG	-	chr8_1:22326158-22326177	Msa1185310:intron	30.0%
AGAAGTGAGAGAAAGAAAAT+AGG	-	chr8_1:22326283-22326302	Msa1185310:CDS	30.0%
TCAAATGACCTATATTTGCA+GGG	+	chr8_1:22326844-22326863	None:intergenic	30.0%
TTCAAATGACCTATATTTGC+AGG	+	chr8_1:22326845-22326864	None:intergenic	30.0%
ACATCTGATTAGTAACTTCA+GGG	+	chr8_1:22326875-22326894	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	22325301	22338795	22325301	ID=Msa1185310;Name=Msa1185310
chr8_1	mRNA	22325301	22338795	22325301	ID=Msa1185310-mRNA-1;Parent=Msa1185310;Name=Msa1185310-mRNA-1;_AED=0.23;_eAED=0.24;_QI=175\|0.85\|0.62\|1\|0.85\|0.75\|8\|0\|224
chr8_1	exon	22325301	22325462	22325301	ID=Msa1185310-mRNA-1:exon:8264;Parent=Msa1185310-mRNA-1
chr8_1	exon	22325779	22325820	22325779	ID=Msa1185310-mRNA-1:exon:8263;Parent=Msa1185310-mRNA-1
chr8_1	exon	22326281	22326322	22326281	ID=Msa1185310-mRNA-1:exon:8262;Parent=Msa1185310-mRNA-1
chr8_1	exon	22326401	22326500	22326401	ID=Msa1185310-mRNA-1:exon:8261;Parent=Msa1185310-mRNA-1
chr8_1	exon	22326601	22326662	22326601	ID=Msa1185310-mRNA-1:exon:8260;Parent=Msa1185310-mRNA-1
chr8_1	exon	22328137	22328221	22328137	ID=Msa1185310-mRNA-1:exon:8259;Parent=Msa1185310-mRNA-1
chr8_1	exon	22337985	22338183	22337985	ID=Msa1185310-mRNA-1:exon:8258;Parent=Msa1185310-mRNA-1
chr8_1	exon	22338638	22338795	22338638	ID=Msa1185310-mRNA-1:exon:8257;Parent=Msa1185310-mRNA-1
chr8_1	five_prime_UTR	22338638	22338795	22338638	ID=Msa1185310-mRNA-1:five_prime_utr;Parent=Msa1185310-mRNA-1
chr8_1	five_prime_UTR	22338167	22338183	22338167	ID=Msa1185310-mRNA-1:five_prime_utr;Parent=Msa1185310-mRNA-1
chr8_1	CDS	22337985	22338166	22337985	ID=Msa1185310-mRNA-1:cds;Parent=Msa1185310-mRNA-1
chr8_1	CDS	22328137	22328221	22328137	ID=Msa1185310-mRNA-1:cds;Parent=Msa1185310-mRNA-1
chr8_1	CDS	22326601	22326662	22326601	ID=Msa1185310-mRNA-1:cds;Parent=Msa1185310-mRNA-1
chr8_1	CDS	22326401	22326500	22326401	ID=Msa1185310-mRNA-1:cds;Parent=Msa1185310-mRNA-1
chr8_1	CDS	22326281	22326322	22326281	ID=Msa1185310-mRNA-1:cds;Parent=Msa1185310-mRNA-1
chr8_1	CDS	22325779	22325820	22325779	ID=Msa1185310-mRNA-1:cds;Parent=Msa1185310-mRNA-1
chr8_1	CDS	22325301	22325462	22325301	ID=Msa1185310-mRNA-1:cds;Parent=Msa1185310-mRNA-1

Gene Sequence

>Msa1185310

ATGGTGAGAGGAAAGACACAAATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACATTCTCAAAGAGAAGAAGTGGTTTGTTGAAGAAAGCCTTTGAATTATCAGTGTTGTGTGACGCTGAGGTTGCTCTTATTGTTTTCTCACCAAGAGGGACGCTTTATGAATTTGCTAGCTCTAGCATTCCAGAAACAATTGAACGATACCGCAGTCATTCCAGGATTAATAATACTCCAACAACATCTGAATCAGTTGAAAATACTCAGCAATTGAAGGAAGAAGCAGAAAACATGATGAAAAAGATTGACCTTCTTGAGACTTCAAAACGGAAACTCTTAGGAGAAGGTCTAGGGTCTTGTTCCATTGATGAACTACAAAAGATTGAACAACAGTTAGAGAGAAGTATAAGCAAAATTCGCGCAAAAAAGACTCAGGTTTTCAGGGAACAAATTGAGCAGCTAAAGGAAAAGGAAAAAACCCTAGTTGCTGAAAATGCCATGCTCACAGAGAAGTATGGTAACTATTCATCACAGGAAGCAATAAAGGATCAGAGAGAAAATATAGCTGAAGCTGAACCTTATGCAGATCAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGTCTTCCAGAAACAAGATCAAGGCGCATTTCTCCAAAGGTGTAG

Protein sequence

>Msa1185310

MVRGKTQMKRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGTLYEFASSSIPETIERYRSHSRINNTPTTSESVENTQQLKEEAENMMKKIDLLETSKRKLLGEGLGSCSIDELQKIEQQLERSISKIRAKKTQVFREQIEQLKEKEKTLVAENAMLTEKYGNYSSQEAIKDQRENIAEAEPYADQSSPSSDVETELFIGLPETRSRRISPKV*