Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306830 | AFK35913.1 | 93.865 | 163 | 8 | 1 | 1 | 161 | 62 | 224 | 2.81e-102 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306830 | sp|O64645|SOC1_ARATH | 53.247 | 154 | 62 | 4 | 1 | 150 | 62 | 209 | 3.26e-41 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306830 | I3S6M1 | 93.865 | 163 | 8 | 1 | 1 | 161 | 62 | 224 | 1.34e-102 | 303 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0306830 | Msa1185310 | 0.872227 | 3.739971e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306830 | MtrunA17_Chr8g0351031 | 93.865 | 163 | 8 | 1 | 1 | 161 | 62 | 224 | 3.02e-106 | 302 |
| Msa0306830 | MtrunA17_Chr8g0351041 | 90.000 | 100 | 8 | 1 | 1 | 98 | 62 | 161 | 8.65e-57 | 175 |
| Msa0306830 | MtrunA17_Chr7g0246431 | 57.895 | 152 | 56 | 5 | 1 | 149 | 62 | 208 | 5.48e-47 | 152 |
| Msa0306830 | MtrunA17_Chr4g0057151 | 44.872 | 156 | 69 | 5 | 1 | 153 | 62 | 203 | 1.98e-31 | 112 |
| Msa0306830 | MtrunA17_Chr3g0097101 | 31.579 | 152 | 92 | 5 | 1 | 147 | 77 | 221 | 8.90e-13 | 63.9 |
| Msa0306830 | MtrunA17_Chr2g0284911 | 34.545 | 110 | 69 | 2 | 1 | 108 | 77 | 185 | 2.04e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306830 | AT2G45660.1 | 53.247 | 154 | 62 | 4 | 1 | 150 | 62 | 209 | 3.32e-42 | 140 |
| Msa0306830 | AT2G45660.2 | 62.000 | 100 | 31 | 3 | 1 | 96 | 62 | 158 | 1.05e-31 | 111 |
| Msa0306830 | AT4G22950.3 | 44.172 | 163 | 82 | 5 | 1 | 160 | 62 | 218 | 1.61e-30 | 110 |
| Msa0306830 | AT4G22950.1 | 44.172 | 163 | 82 | 5 | 1 | 160 | 62 | 218 | 1.61e-30 | 110 |
| Msa0306830 | AT5G62165.3 | 43.421 | 152 | 77 | 4 | 1 | 150 | 62 | 206 | 2.03e-30 | 109 |
| Msa0306830 | AT5G62165.1 | 43.421 | 152 | 77 | 4 | 1 | 150 | 62 | 206 | 2.03e-30 | 109 |
| Msa0306830 | AT5G62165.2 | 43.421 | 152 | 77 | 4 | 1 | 150 | 62 | 206 | 2.03e-30 | 109 |
| Msa0306830 | AT4G22950.2 | 50.909 | 110 | 50 | 2 | 1 | 108 | 62 | 169 | 2.29e-26 | 98.6 |
| Msa0306830 | AT5G51870.1 | 40.909 | 154 | 73 | 5 | 5 | 153 | 66 | 206 | 8.48e-26 | 97.8 |
| Msa0306830 | AT5G51870.4 | 39.216 | 153 | 89 | 2 | 5 | 153 | 66 | 218 | 3.95e-24 | 94.0 |
| Msa0306830 | AT5G51870.3 | 39.216 | 153 | 89 | 2 | 5 | 153 | 76 | 228 | 5.97e-24 | 93.6 |
| Msa0306830 | AT5G62165.17 | 47.917 | 96 | 47 | 2 | 1 | 94 | 62 | 156 | 7.64e-24 | 91.7 |
| Msa0306830 | AT5G62165.12 | 47.917 | 96 | 47 | 2 | 1 | 94 | 62 | 156 | 7.64e-24 | 91.7 |
| Msa0306830 | AT5G62165.11 | 47.917 | 96 | 47 | 2 | 1 | 94 | 62 | 156 | 7.64e-24 | 91.7 |
| Msa0306830 | AT4G11880.4 | 42.857 | 161 | 85 | 3 | 1 | 159 | 63 | 218 | 1.09e-23 | 92.8 |
| Msa0306830 | AT4G11880.1 | 42.857 | 161 | 85 | 3 | 1 | 159 | 63 | 218 | 1.09e-23 | 92.8 |
| Msa0306830 | AT5G62165.10 | 39.333 | 150 | 72 | 4 | 1 | 150 | 62 | 192 | 2.31e-23 | 91.3 |
| Msa0306830 | AT5G62165.4 | 39.333 | 150 | 72 | 4 | 1 | 150 | 62 | 192 | 2.31e-23 | 91.3 |
| Msa0306830 | AT5G62165.6 | 48.193 | 83 | 42 | 1 | 1 | 83 | 62 | 143 | 7.00e-21 | 84.0 |
| Msa0306830 | AT5G62165.9 | 48.193 | 83 | 42 | 1 | 1 | 83 | 62 | 143 | 7.00e-21 | 84.0 |
| Msa0306830 | AT5G62165.7 | 48.193 | 83 | 42 | 1 | 1 | 83 | 62 | 143 | 7.00e-21 | 84.0 |
| Msa0306830 | AT5G62165.8 | 48.193 | 83 | 42 | 1 | 1 | 83 | 62 | 143 | 7.00e-21 | 84.0 |
| Msa0306830 | AT5G62165.13 | 48.193 | 83 | 42 | 1 | 1 | 83 | 62 | 143 | 7.00e-21 | 84.0 |
| Msa0306830 | AT4G11880.2 | 47.917 | 96 | 46 | 2 | 1 | 94 | 63 | 156 | 2.60e-20 | 82.8 |
| Msa0306830 | AT4G11880.3 | 47.917 | 96 | 46 | 2 | 1 | 94 | 63 | 156 | 2.60e-20 | 82.8 |
| Msa0306830 | AT5G51860.1 | 33.548 | 155 | 95 | 2 | 1 | 153 | 62 | 210 | 4.17e-18 | 77.8 |
| Msa0306830 | AT5G62165.15 | 44.231 | 104 | 50 | 3 | 49 | 150 | 56 | 153 | 7.93e-18 | 75.9 |
| Msa0306830 | AT5G62165.5 | 44.231 | 104 | 50 | 3 | 49 | 150 | 56 | 153 | 7.93e-18 | 75.9 |
| Msa0306830 | AT5G51860.2 | 33.758 | 157 | 83 | 3 | 1 | 153 | 62 | 201 | 1.84e-17 | 76.3 |
| Msa0306830 | AT5G51870.2 | 47.619 | 84 | 38 | 3 | 3 | 83 | 64 | 144 | 8.73e-16 | 70.9 |
| Msa0306830 | AT5G51870.5 | 47.619 | 84 | 38 | 3 | 3 | 83 | 87 | 167 | 2.12e-15 | 70.5 |
| Msa0306830 | AT3G58780.1 | 37.037 | 108 | 63 | 3 | 4 | 108 | 80 | 185 | 3.66e-12 | 62.8 |
| Msa0306830 | AT3G58780.5 | 37.037 | 108 | 63 | 3 | 4 | 108 | 86 | 191 | 3.76e-12 | 62.8 |
| Msa0306830 | AT3G58780.3 | 37.037 | 108 | 63 | 3 | 4 | 108 | 105 | 210 | 4.26e-12 | 62.8 |
| Msa0306830 | AT2G42830.1 | 37.963 | 108 | 62 | 3 | 4 | 108 | 80 | 185 | 5.49e-12 | 62.0 |
| Msa0306830 | AT3G58780.4 | 41.975 | 81 | 44 | 2 | 4 | 83 | 80 | 158 | 2.69e-11 | 60.5 |
| Msa0306830 | AT5G62165.16 | 38.235 | 102 | 45 | 3 | 49 | 150 | 56 | 139 | 7.56e-11 | 57.4 |
| Msa0306830 | AT2G42830.2 | 37.255 | 102 | 59 | 3 | 4 | 102 | 80 | 179 | 8.86e-11 | 58.9 |
Find 26 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTATCGTTCAATTGTTTC+TGG | 0.103820 | 2_3:-65973812 | None:intergenic |
| ATGCGCCTTGATCTTGTTTC+TGG | 0.182621 | 2_3:-65976690 | None:intergenic |
| CATTCCCTCAGGAAACTCTT+AGG | 0.332753 | 2_3:+65975518 | Msa0306830:intron |
| TTCATCACAGGAAGCAATAA+AGG | 0.357459 | 2_3:+65976578 | Msa0306830:CDS |
| AACGATACCGCAGTCATTCC+AGG | 0.370506 | 2_3:+65973825 | Msa0306830:CDS |
| TGTTGGAGTATTATTAATCC+TGG | 0.420735 | 2_3:-65973843 | None:intergenic |
| TCCTCAACTAGCTACACCTT+TGG | 0.433392 | 2_3:-65976717 | None:intergenic |
| GGACTACTTTGATCTGCATA+AGG | 0.434122 | 2_3:-65976630 | None:intergenic |
| AAACTCTTAGGAGAAGGTCT+AGG | 0.447821 | 2_3:+65975530 | Msa0306830:CDS |
| TCAACTGATTCAGATGTTGT+TGG | 0.474858 | 2_3:-65973860 | None:intergenic |
| AATTGAGCAGCTAAAGGAAA+AGG | 0.487373 | 2_3:+65975727 | Msa0306830:CDS |
| TTATATATTACAGCAATTGA+AGG | 0.500168 | 2_3:+65975354 | Msa0306830:intron |
| TCAGTCTCCACATCTGAACT+TGG | 0.501611 | 2_3:-65976651 | None:intergenic |
| GTGGAGACTGAATTGTTCAT+TGG | 0.509005 | 2_3:+65976663 | Msa0306830:CDS |
| AACTCTTAGGAGAAGGTCTA+GGG | 0.544433 | 2_3:+65975531 | Msa0306830:CDS |
| GGAACAAATTGAGCAGCTAA+AGG | 0.548309 | 2_3:+65975721 | Msa0306830:CDS |
| TGAATCAGTTGAAAATACTC+AGG | 0.553467 | 2_3:+65973871 | Msa0306830:CDS |
| CTCAGGAAACTCTTAGGAGA+AGG | 0.565759 | 2_3:+65975524 | Msa0306830:intron |
| GTCTTCCAGAAACAAGATCA+AGG | 0.566677 | 2_3:+65976685 | Msa0306830:CDS |
| ACCTTCTTGAGACTTCAAAA+CGG | 0.574379 | 2_3:+65975407 | Msa0306830:CDS |
| ATTTACCTTCTCTGTGAGCA+TGG | 0.576272 | 2_3:-65976234 | None:intergenic |
| AAATGCCATGCTCACAGAGA+AGG | 0.595558 | 2_3:+65976229 | Msa0306830:CDS |
| ATCAAGGCGCATTTCTCCAA+AGG | 0.596039 | 2_3:+65976701 | Msa0306830:CDS |
| AAGTAGTCCAAGTTCAGATG+TGG | 0.602735 | 2_3:+65976644 | Msa0306830:CDS |
| GTATGGTAACTATTCATCAC+AGG | 0.605994 | 2_3:+65976566 | Msa0306830:intron |
| TATTAATCCTGGAATGACTG+CGG | 0.696767 | 2_3:-65973832 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CGTAAAATTTAAAATTATAT+AGG | - | chr2_3:65975654-65975673 | None:intergenic | 10.0% |
| !!! | ATTTTTCTACTTTTTTTTTA+GGG | + | chr2_3:65976034-65976053 | Msa0306830:intron | 10.0% |
| !!! | AAAAAGTACTATTTAATTTC+TGG | - | chr2_3:65973942-65973961 | None:intergenic | 15.0% |
| !! | TATATTATGTGTCTATTTAT+AGG | - | chr2_3:65974131-65974150 | None:intergenic | 15.0% |
| !!! | ATTAATATTTACTCTTTTGT+GGG | + | chr2_3:65974215-65974234 | Msa0306830:intron | 15.0% |
| !! | CATTATTAGAATTAACTATT+AGG | - | chr2_3:65975244-65975263 | None:intergenic | 15.0% |
| !! | CTAATAGTTAATTCTAATAA+TGG | + | chr2_3:65975242-65975261 | Msa0306830:intron | 15.0% |
| !!! | AAAAATGTTTGTTATCAATT+AGG | + | chr2_3:65975806-65975825 | Msa0306830:intron | 15.0% |
| !!! | CATTTTTCTACTTTTTTTTT+AGG | + | chr2_3:65976033-65976052 | Msa0306830:intron | 15.0% |
| !!! | AATTATTTTGAATACAATTC+AGG | + | chr2_3:65976187-65976206 | Msa0306830:intron | 15.0% |
| !!! | GATTAATATTTACTCTTTTG+TGG | + | chr2_3:65974214-65974233 | Msa0306830:intron | 20.0% |
| !!! | TTAATATTTACTCTTTTGTG+GGG | + | chr2_3:65974216-65974235 | Msa0306830:intron | 20.0% |
| !!! | TTTGGTATATGATTTTTATG+TGG | + | chr2_3:65974293-65974312 | Msa0306830:intron | 20.0% |
| !!! | TATATGATTTTTATGTGGTT+AGG | + | chr2_3:65974298-65974317 | Msa0306830:intron | 20.0% |
| !! | CATGTATTATTAGAAAGTTT+GGG | - | chr2_3:65974798-65974817 | None:intergenic | 20.0% |
| !! | TATTAGGATATACATTATAC+TGG | - | chr2_3:65975228-65975247 | None:intergenic | 20.0% |
| !!! | TAATAATGGACATTGTAATT+TGG | + | chr2_3:65975256-65975275 | Msa0306830:intron | 20.0% |
| !! | TTATATATTACAGCAATTGA+AGG | + | chr2_3:65975354-65975373 | Msa0306830:intron | 20.0% |
| !! | AATCTGTTCATTATAAGTAA+GGG | - | chr2_3:65975492-65975511 | None:intergenic | 20.0% |
| !! | TAATCTGTTCATTATAAGTA+AGG | - | chr2_3:65975493-65975512 | None:intergenic | 20.0% |
| !! | AAGCTGTTTATATATTTAAC+AGG | + | chr2_3:65975751-65975770 | Msa0306830:intron | 20.0% |
| !! | TGTTTATATATTTAACAGGA+TGG | + | chr2_3:65975755-65975774 | Msa0306830:intron | 20.0% |
| !!! | TCAATTTGTTATAAGATTTG+TGG | + | chr2_3:65975969-65975988 | Msa0306830:intron | 20.0% |
| !!! | TGAAGCTTTTTTTATTTTCT+TGG | - | chr2_3:65976111-65976130 | None:intergenic | 20.0% |
| !! | AGCAAAAGTTGAAATAATAA+CGG | - | chr2_3:65976465-65976484 | None:intergenic | 20.0% |
| !! | TTAATTTCTGGATGATGAAT+GGG | - | chr2_3:65973930-65973949 | None:intergenic | 25.0% |
| !! | TTTAATTTCTGGATGATGAA+TGG | - | chr2_3:65973931-65973950 | None:intergenic | 25.0% |
| ! | AGATTGTTCTATTATTGTCT+AGG | + | chr2_3:65974015-65974034 | Msa0306830:intron | 25.0% |
| ! | GTCTAAATTATTCTACTTCT+AGG | + | chr2_3:65974094-65974113 | Msa0306830:intron | 25.0% |
| ! | TGAAATTGTATTCTACTTCT+AGG | + | chr2_3:65974155-65974174 | Msa0306830:intron | 25.0% |
| !! | ATCTAGTTCAATACTTGTAT+TGG | + | chr2_3:65974507-65974526 | Msa0306830:intron | 25.0% |
| ! | CCATGTATTATTAGAAAGTT+TGG | - | chr2_3:65974799-65974818 | None:intergenic | 25.0% |
| ! | CCAAACTTTCTAATAATACA+TGG | + | chr2_3:65974796-65974815 | Msa0306830:intron | 25.0% |
| ! | TGGAAATGTTTCAAATATGA+GGG | - | chr2_3:65975208-65975227 | None:intergenic | 25.0% |
| !! | AATCTTTTGTAGTTCATCAA+TGG | - | chr2_3:65975564-65975583 | None:intergenic | 25.0% |
| ! | TCAATTAGGATCACTTTATT+AGG | + | chr2_3:65975820-65975839 | Msa0306830:intron | 25.0% |
| ! | CAATTAGGATCACTTTATTA+GGG | + | chr2_3:65975821-65975840 | Msa0306830:intron | 25.0% |
| !!! | ACTGTAATGCAATTGATTTT+GGG | - | chr2_3:65975946-65975965 | None:intergenic | 25.0% |
| ! | GGAAATTTATCAACGTAAAA+AGG | + | chr2_3:65976358-65976377 | Msa0306830:intron | 25.0% |
| ! | GAGACGATAAAAAATGAAAA+AGG | - | chr2_3:65976437-65976456 | None:intergenic | 25.0% |
| ! | CAAATCTTTCAACTATAGAA+TGG | + | chr2_3:65976524-65976543 | Msa0306830:intron | 25.0% |
| ! | TGTTGGAGTATTATTAATCC+TGG | - | chr2_3:65973846-65973865 | None:intergenic | 30.0% |
| TGAATCAGTTGAAAATACTC+AGG | + | chr2_3:65973871-65973890 | Msa0306830:CDS | 30.0% | |
| ! | TGATTTTTATGTGGTTAGGA+TGG | + | chr2_3:65974302-65974321 | Msa0306830:intron | 30.0% |
| ! | GATTTTTATGTGGTTAGGAT+GGG | + | chr2_3:65974303-65974322 | Msa0306830:intron | 30.0% |
| ! | TCTTTTGATCTGACATTTAG+TGG | + | chr2_3:65974407-65974426 | Msa0306830:intron | 30.0% |
| !!! | ACTTGTATTGGTTTTTTGAG+AGG | + | chr2_3:65974519-65974538 | Msa0306830:intron | 30.0% |
| CTGGGTATAACTAAAAAAAC+CGG | - | chr2_3:65974857-65974876 | None:intergenic | 30.0% | |
| !!! | GTTTTTTTAGTTATACCCAG+CGG | + | chr2_3:65974857-65974876 | Msa0306830:intron | 30.0% |
| ! | AGTCATTTCCATGTGTTATT+AGG | + | chr2_3:65974907-65974926 | Msa0306830:intron | 30.0% |
| ! | ATGTTAGAAGAGCAATTTTC+TGG | + | chr2_3:65974939-65974958 | Msa0306830:intron | 30.0% |
| ! | TGTTAGAAGAGCAATTTTCT+GGG | + | chr2_3:65974940-65974959 | Msa0306830:intron | 30.0% |
| !!! | TGCACTTTTTTTTGCCTTTT+TGG | + | chr2_3:65975012-65975031 | Msa0306830:intron | 30.0% |
| AATGTTTCAAATATGAGGGA+GGG | - | chr2_3:65975204-65975223 | None:intergenic | 30.0% | |
| AAATGTTTCAAATATGAGGG+AGG | - | chr2_3:65975205-65975224 | None:intergenic | 30.0% | |
| CTGGAAATGTTTCAAATATG+AGG | - | chr2_3:65975209-65975228 | None:intergenic | 30.0% | |
| !! | CAAAGTCTCTTAAGTTGAAA+TGG | - | chr2_3:65975315-65975334 | None:intergenic | 30.0% |
| ACTTTCTATTATTCAGACTC+AGG | + | chr2_3:65975691-65975710 | Msa0306830:intron | 30.0% | |
| TAAAGATGCAATCACAATTG+TGG | - | chr2_3:65975903-65975922 | None:intergenic | 30.0% | |
| !! | CACTGTAATGCAATTGATTT+TGG | - | chr2_3:65975947-65975966 | None:intergenic | 30.0% |
| ! | TTTTTGATGTAATGCTAGCT+GGG | - | chr2_3:65976158-65976177 | None:intergenic | 30.0% |
| TTTGAATGAGCAAATTTAGG+GGG | - | chr2_3:65976284-65976303 | None:intergenic | 30.0% | |
| CTTTGAATGAGCAAATTTAG+GGG | - | chr2_3:65976285-65976304 | None:intergenic | 30.0% | |
| ! | GCTTTGAATGAGCAAATTTA+GGG | - | chr2_3:65976286-65976305 | None:intergenic | 30.0% |
| ! | TGCTTTGAATGAGCAAATTT+AGG | - | chr2_3:65976287-65976306 | None:intergenic | 30.0% |
| TTTCAAGATTTCGATGAATC+TGG | - | chr2_3:65976311-65976330 | None:intergenic | 30.0% | |
| TATTAATCCTGGAATGACTG+CGG | - | chr2_3:65973835-65973854 | None:intergenic | 35.0% | |
| ! | TCAACTGATTCAGATGTTGT+TGG | - | chr2_3:65973863-65973882 | None:intergenic | 35.0% |
| ! | ATATTTACTCTTTTGTGGGG+AGG | + | chr2_3:65974219-65974238 | Msa0306830:intron | 35.0% |
| ACTCTTGTGTCTAATGTGAT+TGG | + | chr2_3:65974551-65974570 | Msa0306830:intron | 35.0% | |
| !!! | GTTGAATGTTGCTGTTTTCA+CGG | + | chr2_3:65974772-65974791 | Msa0306830:intron | 35.0% |
| GGTATAACTAAAAAAACCGG+CGG | - | chr2_3:65974854-65974873 | None:intergenic | 35.0% | |
| CAAAGCTTCCTAATAACACA+TGG | - | chr2_3:65974918-65974937 | None:intergenic | 35.0% | |
| ! | CATGTGTTATTAGGAAGCTT+TGG | + | chr2_3:65974916-65974935 | Msa0306830:intron | 35.0% |
| !!! | GTTTCTTCTTTTGGTGTTGT+TGG | + | chr2_3:65974965-65974984 | Msa0306830:intron | 35.0% |
| !!! | TCTTTTGGTGTTGTTGGTTT+AGG | + | chr2_3:65974971-65974990 | Msa0306830:intron | 35.0% |
| !! | TTGTTGGTTTAGGTGTTGTT+TGG | + | chr2_3:65974981-65975000 | Msa0306830:intron | 35.0% |
| !! | TGTTGGTTTAGGTGTTGTTT+GGG | + | chr2_3:65974982-65975001 | Msa0306830:intron | 35.0% |
| !! | TTGCCTTTTTGGTATTTCCT+AGG | + | chr2_3:65975023-65975042 | Msa0306830:intron | 35.0% |
| !! | TGCCTTTTTGGTATTTCCTA+GGG | + | chr2_3:65975024-65975043 | Msa0306830:intron | 35.0% |
| ACCTTCTTGAGACTTCAAAA+CGG | + | chr2_3:65975407-65975426 | Msa0306830:CDS | 35.0% | |
| AGATTATATTGCATTCCCTC+AGG | + | chr2_3:65975507-65975526 | Msa0306830:intron | 35.0% | |
| AAGCAAAATTCGCGCAAAAA+AGG | + | chr2_3:65975607-65975626 | Msa0306830:CDS | 35.0% | |
| ! | TTATTCAGACTCAGGTTTTC+AGG | + | chr2_3:65975699-65975718 | Msa0306830:intron | 35.0% |
| ! | TATTCAGACTCAGGTTTTCA+GGG | + | chr2_3:65975700-65975719 | Msa0306830:intron | 35.0% |
| AATTGAGCAGCTAAAGGAAA+AGG | + | chr2_3:65975727-65975746 | Msa0306830:CDS | 35.0% | |
| TTAAATAGCAGTCGCGATTA+AGG | + | chr2_3:65975846-65975865 | Msa0306830:intron | 35.0% | |
| ! | CTTTTTGATGTAATGCTAGC+TGG | - | chr2_3:65976159-65976178 | None:intergenic | 35.0% |
| TTGAATGAGCAAATTTAGGG+GGG | - | chr2_3:65976283-65976302 | None:intergenic | 35.0% | |
| GACAAAAGTTCAAATGACGA+CGG | + | chr2_3:65976337-65976356 | Msa0306830:intron | 35.0% | |
| TTGTTAAGAGTTAGAGACGT+CGG | + | chr2_3:65976402-65976421 | Msa0306830:intron | 35.0% | |
| ATCCAAATTTGTGTGCAGTA+TGG | + | chr2_3:65976549-65976568 | Msa0306830:intron | 35.0% | |
| TACCATACTGCACACAAATT+TGG | - | chr2_3:65976554-65976573 | None:intergenic | 35.0% | |
| GTATGGTAACTATTCATCAC+AGG | + | chr2_3:65976566-65976585 | Msa0306830:intron | 35.0% | |
| TTCATCACAGGAAGCAATAA+AGG | + | chr2_3:65976578-65976597 | Msa0306830:CDS | 35.0% | |
| CGGTATCGTTCAATTGTTTC+TGG | - | chr2_3:65973815-65973834 | None:intergenic | 40.0% | |
| GGGAAGACAGCAATAATAAG+AGG | - | chr2_3:65973910-65973929 | None:intergenic | 40.0% | |
| ! | AATAGGTGACTAACCGATTC+TGG | - | chr2_3:65974247-65974266 | None:intergenic | 40.0% |
| ! | AGTCACCTATTTGTTGCCTA+TGG | + | chr2_3:65974256-65974275 | Msa0306830:intron | 40.0% |
| ! | GTCACCTATTTGTTGCCTAT+GGG | + | chr2_3:65974257-65974276 | Msa0306830:intron | 40.0% |
| ! | TCACCTATTTGTTGCCTATG+GGG | + | chr2_3:65974258-65974277 | Msa0306830:intron | 40.0% |
| !!! | GGATTTGGTGTGTCTTTTGA+GGG | + | chr2_3:65974342-65974361 | Msa0306830:intron | 40.0% |
| !! | TGTCTTTTGAGGGTTGACTT+GGG | + | chr2_3:65974352-65974371 | Msa0306830:intron | 40.0% |
| TGATCTGACATTTAGTGGTG+TGG | + | chr2_3:65974412-65974431 | Msa0306830:intron | 40.0% | |
| TAATTGTGAGCAGACCAGAT+GGG | - | chr2_3:65974438-65974457 | None:intergenic | 40.0% | |
| ATAATTGTGAGCAGACCAGA+TGG | - | chr2_3:65974439-65974458 | None:intergenic | 40.0% | |
| GTCATTAGATGTTGAGCAAC+TGG | + | chr2_3:65974476-65974495 | Msa0306830:intron | 40.0% | |
| TTGTGTCTAATGTGATTGGC+TGG | + | chr2_3:65974555-65974574 | Msa0306830:intron | 40.0% | |
| GATCAGTAGGTTCTTGAGTA+GGG | + | chr2_3:65974598-65974617 | Msa0306830:intron | 40.0% | |
| ATCAGTAGGTTCTTGAGTAG+GGG | + | chr2_3:65974599-65974618 | Msa0306830:intron | 40.0% | |
| GAAATGACCAAAATACCCAG+CGG | + | chr2_3:65974818-65974837 | Msa0306830:intron | 40.0% | |
| ! | TTAACTACCGCTGGGTATTT+TGG | - | chr2_3:65974828-65974847 | None:intergenic | 40.0% |
| ATGACTAAAAACACCCCTAG+CGG | - | chr2_3:65974893-65974912 | None:intergenic | 40.0% | |
| ! | TAGAAGAGCAATTTTCTGGG+TGG | + | chr2_3:65974943-65974962 | Msa0306830:intron | 40.0% |
| ! | TTCTGGGTGGTTTCTTCTTT+TGG | + | chr2_3:65974956-65974975 | Msa0306830:intron | 40.0% |
| !! | GCCTTTTTGGTATTTCCTAG+GGG | + | chr2_3:65975025-65975044 | Msa0306830:intron | 40.0% |
| ACCCCTAGGAAATACCAAAA+AGG | - | chr2_3:65975029-65975048 | None:intergenic | 40.0% | |
| TTAAAATTCCCTACACCCCT+AGG | - | chr2_3:65975043-65975062 | None:intergenic | 40.0% | |
| !!! | ACCGTTTTGAAGTCTCAAGA+AGG | - | chr2_3:65975411-65975430 | None:intergenic | 40.0% |
| TTCTCCTAAGAGTTTCCTGA+GGG | - | chr2_3:65975525-65975544 | None:intergenic | 40.0% | |
| AAACTCTTAGGAGAAGGTCT+AGG | + | chr2_3:65975530-65975549 | Msa0306830:CDS | 40.0% | |
| AACTCTTAGGAGAAGGTCTA+GGG | + | chr2_3:65975531-65975550 | Msa0306830:CDS | 40.0% | |
| GGAACAAATTGAGCAGCTAA+AGG | + | chr2_3:65975721-65975740 | Msa0306830:CDS | 40.0% | |
| ! | CATGGCATTTTCAGCAACTA+GGG | - | chr2_3:65976219-65976238 | None:intergenic | 40.0% |
| ATTTACCTTCTCTGTGAGCA+TGG | - | chr2_3:65976237-65976256 | None:intergenic | 40.0% | |
| GGACTACTTTGATCTGCATA+AGG | - | chr2_3:65976633-65976652 | None:intergenic | 40.0% | |
| AAGTAGTCCAAGTTCAGATG+TGG | + | chr2_3:65976644-65976663 | Msa0306830:CDS | 40.0% | |
| GTGGAGACTGAATTGTTCAT+TGG | + | chr2_3:65976663-65976682 | Msa0306830:CDS | 40.0% | |
| GTCTTCCAGAAACAAGATCA+AGG | + | chr2_3:65976685-65976704 | Msa0306830:CDS | 40.0% | |
| CTACCCCATAGGCAACAAAT+AGG | - | chr2_3:65974264-65974283 | None:intergenic | 45.0% | |
| ATGGGAGTCAGTTCTGCAAA+GGG | + | chr2_3:65974321-65974340 | Msa0306830:intron | 45.0% | |
| GTCAGTTCTGCAAAGGGATT+TGG | + | chr2_3:65974327-65974346 | Msa0306830:intron | 45.0% | |
| !!! | GGGATTTGGTGTGTCTTTTG+AGG | + | chr2_3:65974341-65974360 | Msa0306830:intron | 45.0% |
| !! | GTGTCTTTTGAGGGTTGACT+TGG | + | chr2_3:65974351-65974370 | Msa0306830:intron | 45.0% |
| !! | AGGGTTGACTTGGGTTATCT+GGG | + | chr2_3:65974361-65974380 | Msa0306830:intron | 45.0% |
| TATCTGGGCGTGAGAAGTTA+AGG | + | chr2_3:65974376-65974395 | Msa0306830:intron | 45.0% | |
| CTGGTCTGCTCACAATTATC+TGG | + | chr2_3:65974440-65974459 | Msa0306830:intron | 45.0% | |
| ! | TGTCTAATGTGATTGGCTGG+TGG | + | chr2_3:65974558-65974577 | Msa0306830:intron | 45.0% |
| ACTCAAGAACCTACTGATCC+TGG | - | chr2_3:65974597-65974616 | None:intergenic | 45.0% | |
| GGATCAGTAGGTTCTTGAGT+AGG | + | chr2_3:65974597-65974616 | Msa0306830:intron | 45.0% | |
| TCATGTTTGTGCCACACTCT+TGG | + | chr2_3:65974665-65974684 | Msa0306830:intron | 45.0% | |
| CATGTTTGTGCCACACTCTT+GGG | + | chr2_3:65974666-65974685 | Msa0306830:intron | 45.0% | |
| ATGTTTGTGCCACACTCTTG+GGG | + | chr2_3:65974667-65974686 | Msa0306830:intron | 45.0% | |
| ! | TTCTAGGCTAGCCCTAATGT+TGG | + | chr2_3:65974740-65974759 | Msa0306830:intron | 45.0% |
| ! | TCTAGGCTAGCCCTAATGTT+GGG | + | chr2_3:65974741-65974760 | Msa0306830:intron | 45.0% |
| ! | TTGGTATTTCCTAGGGGTGT+AGG | + | chr2_3:65975031-65975050 | Msa0306830:intron | 45.0% |
| ! | TGGTATTTCCTAGGGGTGTA+GGG | + | chr2_3:65975032-65975051 | Msa0306830:intron | 45.0% |
| CATTCCCTCAGGAAACTCTT+AGG | + | chr2_3:65975518-65975537 | Msa0306830:intron | 45.0% | |
| CTTCTCCTAAGAGTTTCCTG+AGG | - | chr2_3:65975526-65975545 | None:intergenic | 45.0% | |
| CTCAGGAAACTCTTAGGAGA+AGG | + | chr2_3:65975524-65975543 | Msa0306830:intron | 45.0% | |
| ! | GCATGGCATTTTCAGCAACT+AGG | - | chr2_3:65976220-65976239 | None:intergenic | 45.0% |
| AAATGCCATGCTCACAGAGA+AGG | + | chr2_3:65976229-65976248 | Msa0306830:CDS | 45.0% | |
| TCAGTCTCCACATCTGAACT+TGG | - | chr2_3:65976654-65976673 | None:intergenic | 45.0% | |
| ! | ATGCGCCTTGATCTTGTTTC+TGG | - | chr2_3:65976693-65976712 | None:intergenic | 45.0% |
| ATCAAGGCGCATTTCTCCAA+AGG | + | chr2_3:65976701-65976720 | Msa0306830:CDS | 45.0% | |
| !! | ATTAATATATATAGAATAAA+AGG | - | chr2_3:65975109-65975128 | None:intergenic | 5.0% |
| !!! | CTATATAATTTTAAATTTTA+CGG | + | chr2_3:65975652-65975671 | Msa0306830:intron | 5.0% |
| AACGATACCGCAGTCATTCC+AGG | + | chr2_3:65973825-65973844 | Msa0306830:CDS | 50.0% | |
| TTGCCTATGGGGTAGCTTCT+AGG | + | chr2_3:65974269-65974288 | Msa0306830:intron | 50.0% | |
| TGCCTATGGGGTAGCTTCTA+GGG | + | chr2_3:65974270-65974289 | Msa0306830:intron | 50.0% | |
| AACCCTAGAAGCTACCCCAT+AGG | - | chr2_3:65974275-65974294 | None:intergenic | 50.0% | |
| !! | ATGGGGTAGCTTCTAGGGTT+TGG | + | chr2_3:65974275-65974294 | Msa0306830:intron | 50.0% |
| GATGGGAGTCAGTTCTGCAA+AGG | + | chr2_3:65974320-65974339 | Msa0306830:intron | 50.0% | |
| !! | GAGGGTTGACTTGGGTTATC+TGG | + | chr2_3:65974360-65974379 | Msa0306830:intron | 50.0% |
| ATTTAGTGGTGTGGCCCATC+TGG | + | chr2_3:65974421-65974440 | Msa0306830:intron | 50.0% | |
| TACTGATCCTGGCAGAGGAT+CGG | - | chr2_3:65974586-65974605 | None:intergenic | 50.0% | |
| AGCTTACTACCCCAAGAGTG+TGG | - | chr2_3:65974679-65974698 | None:intergenic | 50.0% | |
| CACTCTTGGGGTAGTAAGCT+TGG | + | chr2_3:65974679-65974698 | Msa0306830:intron | 50.0% | |
| AACAAAGAGCCCAGACCCAA+GGG | - | chr2_3:65974713-65974732 | None:intergenic | 50.0% | |
| !! | CTCTTTGTTGGCGGGTTTCT+AGG | + | chr2_3:65974724-65974743 | Msa0306830:intron | 50.0% |
| ! | CTAGGCTAGCCCTAATGTTG+GGG | + | chr2_3:65974742-65974761 | Msa0306830:intron | 50.0% |
| CTAGCCCTAATGTTGGGGTT+GGG | + | chr2_3:65974747-65974766 | Msa0306830:intron | 50.0% | |
| ACCACCCAACCCCAACATTA+GGG | - | chr2_3:65974754-65974773 | None:intergenic | 50.0% | |
| AACCACCCAACCCCAACATT+AGG | - | chr2_3:65974755-65974774 | None:intergenic | 50.0% | |
| AGCGGTAGTTAACTACCGCT+GGG | - | chr2_3:65974875-65974894 | None:intergenic | 50.0% | |
| TAGCGGTAGTTAACTACCGC+TGG | - | chr2_3:65974876-65974895 | None:intergenic | 50.0% | |
| AGCGGTAGTTAACTACCGCT+AGG | + | chr2_3:65974875-65974894 | Msa0306830:intron | 50.0% | |
| GCGGTAGTTAACTACCGCTA+GGG | + | chr2_3:65974876-65974895 | Msa0306830:intron | 50.0% | |
| CGGTAGTTAACTACCGCTAG+GGG | + | chr2_3:65974877-65974896 | Msa0306830:intron | 50.0% | |
| TTGTGGGGAGGAGCCAGAAT+CGG | + | chr2_3:65974231-65974250 | Msa0306830:intron | 55.0% | |
| GATCCTCTGCCAGGATCAGT+AGG | + | chr2_3:65974585-65974604 | Msa0306830:intron | 55.0% | |
| GAACCTACTGATCCTGGCAG+AGG | - | chr2_3:65974591-65974610 | None:intergenic | 55.0% | |
| CTTGAGTAGGGGTCGTGCTT+CGG | + | chr2_3:65974610-65974629 | Msa0306830:intron | 55.0% | |
| ! | CGTGCTTCGGTGCATTTGAG+CGG | + | chr2_3:65974623-65974642 | Msa0306830:intron | 55.0% |
| ! | GTGCTTCGGTGCATTTGAGC+GGG | + | chr2_3:65974624-65974643 | Msa0306830:intron | 55.0% |
| ! | TGCTTCGGTGCATTTGAGCG+GGG | + | chr2_3:65974625-65974644 | Msa0306830:intron | 55.0% |
| AAGCTTGGTCCATCTCCCCT+TGG | + | chr2_3:65974694-65974713 | Msa0306830:intron | 55.0% | |
| AGCTTGGTCCATCTCCCCTT+GGG | + | chr2_3:65974695-65974714 | Msa0306830:intron | 55.0% | |
| ACAAAGAGCCCAGACCCAAG+GGG | - | chr2_3:65974712-65974731 | None:intergenic | 55.0% | |
| CAACAAAGAGCCCAGACCCA+AGG | - | chr2_3:65974714-65974733 | None:intergenic | 55.0% | |
| CTTGGGTCTGGGCTCTTTGT+TGG | + | chr2_3:65974712-65974731 | Msa0306830:intron | 55.0% | |
| GCTAGCCCTAATGTTGGGGT+TGG | + | chr2_3:65974746-65974765 | Msa0306830:intron | 55.0% | |
| GGCGGTAGTTAACTACCGCT+GGG | - | chr2_3:65974836-65974855 | None:intergenic | 55.0% | |
| CAGCGGTAGTTAACTACCGC+CGG | + | chr2_3:65974835-65974854 | Msa0306830:intron | 55.0% | |
| GGGCGTGAGAAGTTAAGGCG+TGG | + | chr2_3:65974381-65974400 | Msa0306830:intron | 60.0% | |
| GTCCATCTCCCCTTGGGTCT+GGG | + | chr2_3:65974701-65974720 | Msa0306830:intron | 60.0% | |
| GGGTCTGGGCTCTTTGTTGG+CGG | + | chr2_3:65974715-65974734 | Msa0306830:intron | 60.0% | |
| GGTCTGGGCTCTTTGTTGGC+GGG | + | chr2_3:65974716-65974735 | Msa0306830:intron | 60.0% | |
| GCCCTAATGTTGGGGTTGGG+TGG | + | chr2_3:65974750-65974769 | Msa0306830:intron | 60.0% | |
| CGGCGGTAGTTAACTACCGC+TGG | - | chr2_3:65974837-65974856 | None:intergenic | 60.0% | |
| GGTGGAACCGATCCTCTGCC+AGG | + | chr2_3:65974576-65974595 | Msa0306830:intron | 65.0% | |
| GGTCCATCTCCCCTTGGGTC+TGG | + | chr2_3:65974700-65974719 | Msa0306830:intron | 65.0% | |
| AGCCCAGACCCAAGGGGAGA+TGG | - | chr2_3:65974706-65974725 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 65973809 | 65976725 | 65973809 | ID=Msa0306830;Name=Msa0306830 |
| chr2_3 | mRNA | 65973809 | 65976725 | 65973809 | ID=Msa0306830-mRNA-1;Parent=Msa0306830;Name=Msa0306830-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.8|0.33|1|0.8|0.66|6|0|161 |
| chr2_3 | exon | 65973809 | 65973892 | 65973809 | ID=Msa0306830-mRNA-1:exon:21946;Parent=Msa0306830-mRNA-1 |
| chr2_3 | exon | 65975367 | 65975428 | 65975367 | ID=Msa0306830-mRNA-1:exon:21947;Parent=Msa0306830-mRNA-1 |
| chr2_3 | exon | 65975529 | 65975628 | 65975529 | ID=Msa0306830-mRNA-1:exon:21948;Parent=Msa0306830-mRNA-1 |
| chr2_3 | exon | 65975713 | 65975748 | 65975713 | ID=Msa0306830-mRNA-1:exon:21949;Parent=Msa0306830-mRNA-1 |
| chr2_3 | exon | 65976209 | 65976250 | 65976209 | ID=Msa0306830-mRNA-1:exon:21950;Parent=Msa0306830-mRNA-1 |
| chr2_3 | exon | 65976567 | 65976725 | 65976567 | ID=Msa0306830-mRNA-1:exon:21951;Parent=Msa0306830-mRNA-1 |
| chr2_3 | CDS | 65973809 | 65973892 | 65973809 | ID=Msa0306830-mRNA-1:cds;Parent=Msa0306830-mRNA-1 |
| chr2_3 | CDS | 65975367 | 65975428 | 65975367 | ID=Msa0306830-mRNA-1:cds;Parent=Msa0306830-mRNA-1 |
| chr2_3 | CDS | 65975529 | 65975628 | 65975529 | ID=Msa0306830-mRNA-1:cds;Parent=Msa0306830-mRNA-1 |
| chr2_3 | CDS | 65975713 | 65975748 | 65975713 | ID=Msa0306830-mRNA-1:cds;Parent=Msa0306830-mRNA-1 |
| chr2_3 | CDS | 65976209 | 65976250 | 65976209 | ID=Msa0306830-mRNA-1:cds;Parent=Msa0306830-mRNA-1 |
| chr2_3 | CDS | 65976567 | 65976725 | 65976567 | ID=Msa0306830-mRNA-1:cds;Parent=Msa0306830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
