AlfalfaGEDB | Msa0306840

M. sativa cultivar zhongmu-4 / Msa0306840

KEGG: K09260
GO: GO:0000003 GO:0000060 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008134 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0017038 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034504 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0306840	RDX68490.1	89.394	66	7	0	6	71	15	80	2.17e-35	126

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0306840	sp\|Q38838\|AGL14_ARATH	90.476	63	6	0	11	73	1	63	1.65e-35	122

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0306840	A0A371ER05	89.394	66	7	0	6	71	15	80	1.04e-35	126

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TFs/TRs:

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Gene ID	Type	Classification
Msa0306840	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0306840	Msa1185300	0.816876	4.412200e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0306840	MtrunA17_Chr8g0351041	100.000	60	0	0	11	70	1	60	1.75e-38	125
Msa0306840	MtrunA17_Chr8g0351031	98.333	60	1	0	11	70	1	60	2.69e-37	124
Msa0306840	MtrunA17_Chr7g0246431	95.000	60	3	0	11	70	1	60	6.43e-37	123
Msa0306840	MtrunA17_Chr4g0057151	77.027	74	16	1	11	84	1	73	7.12e-33	112
Msa0306840	MtrunA17_Chr3g0097101	76.190	63	15	0	8	70	13	75	2.49e-29	104
Msa0306840	MtrunA17_Chr7g0246381	75.806	62	15	0	11	72	1	62	7.56e-29	98.6
Msa0306840	MtrunA17_Chr2g0284911	78.689	61	13	0	10	70	15	75	9.30e-29	103
Msa0306840	MtrunA17_Chr3g0077501	78.333	60	13	0	11	70	1	60	9.73e-29	102
Msa0306840	MtrunA17_Chr8g0380021	78.689	61	13	0	10	70	16	76	1.03e-28	102
Msa0306840	MtrunA17_Chr6g0455511	74.603	63	16	0	11	73	1	63	8.43e-28	100

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0306840	AT4G11880.2	90.476	63	6	11	73	1	63	4.87e-37	122
Msa0306840	AT4G11880.3	90.476	63	6	11	73	1	63	4.87e-37	122
Msa0306840	AT2G45660.2	93.333	60	4	11	70	1	60	9.54e-37	121
Msa0306840	AT4G11880.4	90.476	63	6	11	73	1	63	1.68e-36	122
Msa0306840	AT4G11880.1	90.476	63	6	11	73	1	63	1.68e-36	122
Msa0306840	AT2G45660.1	93.333	60	4	11	70	1	60	4.37e-36	121
Msa0306840	AT4G22950.2	90.000	60	6	11	70	1	60	2.94e-35	118
Msa0306840	AT4G22950.3	90.000	60	6	11	70	1	60	1.94e-34	117
Msa0306840	AT4G22950.1	90.000	60	6	11	70	1	60	1.94e-34	117
Msa0306840	AT5G62165.6	83.333	60	10	11	70	1	60	1.10e-32	110

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Find 21 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTCATAAAGCCTCCCTCT+TGG	0.547865	2_3:-65987620	None:intergenic
ACACAACACTGATAACTCAA+AGG	0.620897	2_3:-65987567	None:intergenic
ACATTCTCAAAGAGGAGAAA+TGG	0.421788	2_3:+65987530	Msa0306840:CDS
ATCAGTGTTGTGTGATGCTG+AGG	0.567431	2_3:+65987577	Msa0306840:CDS
ATTTATTTCTTAATATGGTG+GGG	0.544084	2_3:+65986643	Msa0306840:five_prime_UTR
CAATCATTTATTTCTTAATA+TGG	0.167043	2_3:+65986638	Msa0306840:five_prime_UTR
CACAGCACCTATAAATCCAA+CGG	0.613739	2_3:-65989864	None:intergenic
CATTTATTTCTTAATATGGT+GGG	0.422909	2_3:+65986642	Msa0306840:five_prime_UTR
CTTAATATGGTGGGGTAAGA+TGG	0.331970	2_3:+65986651	Msa0306840:five_prime_UTR
GGCAAGTAACATTCTCAAAG+AGG	0.594159	2_3:+65987522	Msa0306840:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAAATTCAAGGAAAAGGAT+TGG	-	chr2_3:65986756-65986775	None:intergenic	30.0%
TTGAGGTAAATTCAAGGAAA+AGG	-	chr2_3:65986761-65986780	None:intergenic	30.0%
AGGAAAAGAATGGAAGAAAA+GGG	-	chr2_3:65986859-65986878	None:intergenic	30.0%
AAGGAAAAGAATGGAAGAAA+AGG	-	chr2_3:65986860-65986879	None:intergenic	30.0%
AGAAAAAATGAACCAAGGTA+CGG	-	chr2_3:65986912-65986931	None:intergenic	30.0%
AAGGGTGATTATATGAATGA+TGG	-	chr2_3:65987178-65987197	None:intergenic	30.0%
ACTCAATAAAACCAAATGGA+CGG	-	chr2_3:65987209-65987228	None:intergenic	30.0%
TACCACTCAATAAAACCAAA+TGG	-	chr2_3:65987213-65987232	None:intergenic	30.0%
AGGAAAAGGGATGAAAATAT+TGG	-	chr2_3:65987292-65987311	None:intergenic	30.0%
AGAAAAGAAAAAATGGTGAG+AGG	+	chr2_3:65987461-65987480	Msa0306840:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	65986635	65989907	65986635	ID=Msa0306840;Name=Msa0306840
chr2_3	mRNA	65986635	65989907	65986635	ID=Msa0306840-mRNA-1;Parent=Msa0306840;Name=Msa0306840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=53\|0.5\|0.66\|0.66\|0.5\|0.33\|3\|0\|85
chr2_3	exon	65986635	65986697	65986635	ID=Msa0306840-mRNA-1:exon:21983;Parent=Msa0306840-mRNA-1
chr2_3	exon	65987453	65987654	65987453	ID=Msa0306840-mRNA-1:exon:21984;Parent=Msa0306840-mRNA-1
chr2_3	exon	65989862	65989907	65989862	ID=Msa0306840-mRNA-1:exon:21985;Parent=Msa0306840-mRNA-1
chr2_3	five_prime_UTR	65986635	65986687	65986635	ID=Msa0306840-mRNA-1:five_prime_utr;Parent=Msa0306840-mRNA-1
chr2_3	CDS	65986688	65986697	65986688	ID=Msa0306840-mRNA-1:cds;Parent=Msa0306840-mRNA-1
chr2_3	CDS	65987453	65987654	65987453	ID=Msa0306840-mRNA-1:cds;Parent=Msa0306840-mRNA-1
chr2_3	CDS	65989862	65989907	65989862	ID=Msa0306840-mRNA-1:cds;Parent=Msa0306840-mRNA-1

Gene Sequence	>Msa0306840 ATGAGGAAAGCAGAGAAAAGAAAAGAAAAAATGGTGAGAGGAAAGACACAAATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACATTCTCAAAGAGGAGAAATGGTTTGTTGAAGAAAGCCTTTGAGTTATCAGTGTTGTGTGATGCTGAGGTTGCTCTTATTGTTTTCTCACCAAGAGGGAGGCTTTATGAATTTGCTAGCTCTAGATCCGTTGGATTTATAGGTGCTGTGTATTTTGGATCAGTGATATAG
Protein sequence	>Msa0306840 MRKAEKRKEKMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSRSVGFIGAVYFGSVI*