Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306840 | RDX68490.1 | 89.394 | 66 | 7 | 0 | 6 | 71 | 15 | 80 | 2.17e-35 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306840 | sp|Q38838|AGL14_ARATH | 90.476 | 63 | 6 | 0 | 11 | 73 | 1 | 63 | 1.65e-35 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306840 | A0A371ER05 | 89.394 | 66 | 7 | 0 | 6 | 71 | 15 | 80 | 1.04e-35 | 126 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0306840 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0306840 | Msa1185300 | 0.816876 | 4.412200e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306840 | MtrunA17_Chr8g0351041 | 100.000 | 60 | 0 | 0 | 11 | 70 | 1 | 60 | 1.75e-38 | 125 |
| Msa0306840 | MtrunA17_Chr8g0351031 | 98.333 | 60 | 1 | 0 | 11 | 70 | 1 | 60 | 2.69e-37 | 124 |
| Msa0306840 | MtrunA17_Chr7g0246431 | 95.000 | 60 | 3 | 0 | 11 | 70 | 1 | 60 | 6.43e-37 | 123 |
| Msa0306840 | MtrunA17_Chr4g0057151 | 77.027 | 74 | 16 | 1 | 11 | 84 | 1 | 73 | 7.12e-33 | 112 |
| Msa0306840 | MtrunA17_Chr3g0097101 | 76.190 | 63 | 15 | 0 | 8 | 70 | 13 | 75 | 2.49e-29 | 104 |
| Msa0306840 | MtrunA17_Chr7g0246381 | 75.806 | 62 | 15 | 0 | 11 | 72 | 1 | 62 | 7.56e-29 | 98.6 |
| Msa0306840 | MtrunA17_Chr2g0284911 | 78.689 | 61 | 13 | 0 | 10 | 70 | 15 | 75 | 9.30e-29 | 103 |
| Msa0306840 | MtrunA17_Chr3g0077501 | 78.333 | 60 | 13 | 0 | 11 | 70 | 1 | 60 | 9.73e-29 | 102 |
| Msa0306840 | MtrunA17_Chr8g0380021 | 78.689 | 61 | 13 | 0 | 10 | 70 | 16 | 76 | 1.03e-28 | 102 |
| Msa0306840 | MtrunA17_Chr6g0455511 | 74.603 | 63 | 16 | 0 | 11 | 73 | 1 | 63 | 8.43e-28 | 100 |
| Msa0306840 | MtrunA17_Chr3g0122251 | 74.603 | 63 | 16 | 0 | 11 | 73 | 1 | 63 | 1.02e-27 | 100 |
| Msa0306840 | MtrunA17_Chr5g0420091 | 70.312 | 64 | 19 | 0 | 11 | 74 | 1 | 64 | 1.14e-27 | 99.8 |
| Msa0306840 | MtrunA17_Chr4g0061671 | 73.333 | 60 | 16 | 0 | 11 | 70 | 1 | 60 | 1.22e-27 | 98.6 |
| Msa0306840 | MtrunA17_Chr8g0377561 | 75.862 | 58 | 14 | 0 | 11 | 68 | 1 | 58 | 1.91e-27 | 95.5 |
| Msa0306840 | MtrunA17_Chr8g0351051 | 77.966 | 59 | 13 | 0 | 11 | 69 | 1 | 59 | 2.51e-27 | 99.8 |
| Msa0306840 | MtrunA17_Chr7g0220111 | 71.429 | 63 | 18 | 0 | 11 | 73 | 1 | 63 | 2.71e-27 | 99.4 |
| Msa0306840 | MtrunA17_Chr2g0308251 | 64.865 | 74 | 25 | 1 | 11 | 84 | 1 | 73 | 3.47e-27 | 94.7 |
| Msa0306840 | MtrunA17_Chr5g0427921 | 68.852 | 61 | 19 | 0 | 11 | 71 | 1 | 61 | 8.40e-27 | 92.8 |
| Msa0306840 | MtrunA17_Chr1g0173161 | 72.131 | 61 | 17 | 0 | 11 | 71 | 1 | 61 | 1.03e-26 | 93.6 |
| Msa0306840 | MtrunA17_Chr2g0279821 | 71.667 | 60 | 17 | 0 | 11 | 70 | 1 | 60 | 2.40e-25 | 94.0 |
| Msa0306840 | MtrunA17_Chr4g0020221 | 73.333 | 60 | 16 | 0 | 11 | 70 | 1 | 60 | 5.03e-25 | 93.6 |
| Msa0306840 | MtrunA17_Chr6g0474371 | 61.429 | 70 | 27 | 0 | 11 | 80 | 1 | 70 | 9.26e-25 | 91.7 |
| Msa0306840 | MtrunA17_Chr8g0366231 | 71.667 | 60 | 17 | 0 | 11 | 70 | 1 | 60 | 1.00e-24 | 92.4 |
| Msa0306840 | MtrunA17_Chr4g0061691 | 70.000 | 60 | 18 | 0 | 11 | 70 | 1 | 60 | 2.15e-24 | 91.7 |
| Msa0306840 | MtrunA17_Chr1g0204111 | 63.768 | 69 | 24 | 1 | 3 | 70 | 8 | 76 | 5.34e-24 | 90.9 |
| Msa0306840 | MtrunA17_Chr5g0425191 | 65.574 | 61 | 21 | 0 | 11 | 71 | 1 | 61 | 1.03e-23 | 86.3 |
| Msa0306840 | MtrunA17_Chr7g0220121 | 62.857 | 70 | 26 | 0 | 11 | 80 | 1 | 70 | 1.08e-23 | 90.1 |
| Msa0306840 | MtrunA17_Chr4g0018421 | 67.797 | 59 | 19 | 0 | 11 | 69 | 1 | 59 | 1.16e-23 | 89.0 |
| Msa0306840 | MtrunA17_Chr5g0427401 | 62.121 | 66 | 25 | 0 | 11 | 76 | 1 | 66 | 1.94e-23 | 89.0 |
| Msa0306840 | MtrunA17_Chr3g0142191 | 67.797 | 59 | 19 | 0 | 11 | 69 | 1 | 59 | 2.66e-23 | 88.6 |
| Msa0306840 | MtrunA17_Chr5g0412271 | 67.797 | 59 | 19 | 0 | 11 | 69 | 1 | 59 | 3.03e-23 | 88.6 |
| Msa0306840 | MtrunA17_Chr5g0412461 | 67.797 | 59 | 19 | 0 | 11 | 69 | 1 | 59 | 4.14e-23 | 88.2 |
| Msa0306840 | MtrunA17_Chr4g0044071 | 62.295 | 61 | 23 | 0 | 11 | 71 | 1 | 61 | 4.73e-23 | 85.1 |
| Msa0306840 | MtrunA17_Chr3g0134451 | 66.667 | 63 | 21 | 0 | 11 | 73 | 1 | 63 | 7.14e-23 | 89.0 |
| Msa0306840 | MtrunA17_Chr4g0049541 | 68.333 | 60 | 19 | 0 | 11 | 70 | 1 | 60 | 1.35e-22 | 86.7 |
| Msa0306840 | MtrunA17_Chr5g0420081 | 65.000 | 60 | 21 | 0 | 11 | 70 | 1 | 60 | 3.53e-22 | 85.9 |
| Msa0306840 | MtrunA17_Chr5g0411691 | 63.333 | 60 | 22 | 0 | 11 | 70 | 1 | 60 | 4.13e-22 | 85.9 |
| Msa0306840 | MtrunA17_Chr3g0125241 | 61.017 | 59 | 23 | 0 | 11 | 69 | 26 | 84 | 7.77e-22 | 84.3 |
| Msa0306840 | MtrunA17_Chr4g0049901 | 65.000 | 60 | 21 | 0 | 11 | 70 | 27 | 86 | 1.86e-21 | 84.0 |
| Msa0306840 | MtrunA17_Chr1g0159661 | 55.932 | 59 | 26 | 0 | 11 | 69 | 1 | 59 | 4.98e-21 | 81.6 |
| Msa0306840 | MtrunA17_Chr5g0404951 | 61.017 | 59 | 23 | 0 | 11 | 69 | 1 | 59 | 1.51e-20 | 81.6 |
| Msa0306840 | MtrunA17_Chr1g0164791 | 60.000 | 60 | 24 | 0 | 11 | 70 | 1 | 60 | 3.70e-20 | 80.5 |
| Msa0306840 | MtrunA17_Chr1g0166611 | 64.407 | 59 | 21 | 0 | 23 | 81 | 17 | 75 | 4.34e-20 | 78.2 |
| Msa0306840 | MtrunA17_Chr1g0175611 | 50.704 | 71 | 34 | 1 | 11 | 81 | 1 | 70 | 3.35e-18 | 73.9 |
| Msa0306840 | MtrunA17_Chr8g0379021 | 43.590 | 78 | 44 | 0 | 7 | 84 | 7 | 84 | 5.34e-18 | 73.6 |
| Msa0306840 | MtrunA17_Chr8g0376821 | 50.704 | 71 | 34 | 1 | 11 | 81 | 1 | 70 | 1.94e-17 | 72.4 |
| Msa0306840 | MtrunA17_Chr1g0169761 | 50.704 | 71 | 34 | 1 | 11 | 81 | 1 | 70 | 2.68e-17 | 72.0 |
| Msa0306840 | MtrunA17_Chr1g0180591 | 47.887 | 71 | 36 | 1 | 11 | 81 | 1 | 70 | 3.70e-17 | 71.6 |
| Msa0306840 | MtrunA17_Chr1g0208581 | 54.237 | 59 | 27 | 0 | 13 | 71 | 10 | 68 | 6.02e-17 | 72.0 |
| Msa0306840 | MtrunA17_Chr2g0333981 | 41.667 | 84 | 49 | 0 | 1 | 84 | 1 | 84 | 7.46e-17 | 70.9 |
| Msa0306840 | MtrunA17_Chr2g0292791 | 60.000 | 55 | 22 | 0 | 13 | 67 | 10 | 64 | 1.27e-16 | 71.2 |
| Msa0306840 | MtrunA17_Chr4g0074101 | 46.479 | 71 | 37 | 1 | 11 | 81 | 1 | 70 | 2.64e-16 | 69.7 |
| Msa0306840 | MtrunA17_Chr1g0175601 | 47.887 | 71 | 36 | 1 | 11 | 81 | 1 | 70 | 3.48e-16 | 68.9 |
| Msa0306840 | MtrunA17_Chr1g0208561 | 52.542 | 59 | 28 | 0 | 13 | 71 | 10 | 68 | 4.97e-16 | 69.7 |
| Msa0306840 | MtrunA17_Chr3g0089141 | 52.542 | 59 | 28 | 0 | 13 | 71 | 10 | 68 | 5.47e-16 | 69.3 |
| Msa0306840 | MtrunA17_Chr5g0417661 | 52.830 | 53 | 25 | 0 | 11 | 63 | 56 | 108 | 9.51e-16 | 66.6 |
| Msa0306840 | MtrunA17_Chr1g0188671 | 52.459 | 61 | 29 | 0 | 8 | 68 | 43 | 103 | 1.51e-15 | 68.9 |
| Msa0306840 | MtrunA17_Chr3g0099421 | 57.143 | 56 | 24 | 0 | 13 | 68 | 35 | 90 | 1.72e-15 | 68.6 |
| Msa0306840 | MtrunA17_Chr4g0018951 | 68.182 | 44 | 14 | 0 | 24 | 67 | 24 | 67 | 1.92e-15 | 67.0 |
| Msa0306840 | MtrunA17_Chr3g0099411 | 55.357 | 56 | 25 | 0 | 13 | 68 | 10 | 65 | 4.26e-15 | 67.0 |
| Msa0306840 | MtrunA17_Chr1g0149391 | 55.357 | 56 | 25 | 0 | 13 | 68 | 10 | 65 | 5.75e-15 | 67.0 |
| Msa0306840 | MtrunA17_Chr1g0206721 | 53.448 | 58 | 27 | 0 | 13 | 70 | 10 | 67 | 5.75e-15 | 67.0 |
| Msa0306840 | MtrunA17_Chr8g0355091 | 55.357 | 56 | 25 | 0 | 13 | 68 | 10 | 65 | 6.06e-15 | 67.0 |
| Msa0306840 | MtrunA17_Chr1g0187361 | 55.357 | 56 | 25 | 0 | 13 | 68 | 10 | 65 | 6.52e-15 | 66.6 |
| Msa0306840 | MtrunA17_Chr1g0206701 | 55.357 | 56 | 25 | 0 | 13 | 68 | 10 | 65 | 6.72e-15 | 66.6 |
| Msa0306840 | MtrunA17_Chr8g0357771 | 54.386 | 57 | 26 | 0 | 11 | 67 | 1 | 57 | 7.16e-15 | 65.9 |
| Msa0306840 | MtrunA17_Chr5g0422421 | 57.143 | 56 | 24 | 0 | 13 | 68 | 10 | 65 | 8.36e-15 | 66.6 |
| Msa0306840 | MtrunA17_Chr5g0419601 | 50.000 | 64 | 32 | 0 | 8 | 71 | 5 | 68 | 1.20e-14 | 66.2 |
| Msa0306840 | MtrunA17_Chr4g0052081 | 49.153 | 59 | 30 | 0 | 11 | 69 | 1 | 59 | 2.17e-14 | 64.3 |
| Msa0306840 | MtrunA17_Chr2g0300421 | 51.786 | 56 | 27 | 0 | 13 | 68 | 10 | 65 | 2.39e-14 | 64.3 |
| Msa0306840 | MtrunA17_Chr2g0317481 | 53.571 | 56 | 26 | 0 | 13 | 68 | 10 | 65 | 2.47e-14 | 65.1 |
| Msa0306840 | MtrunA17_Chr2g0317451 | 53.571 | 56 | 26 | 0 | 13 | 68 | 10 | 65 | 2.52e-14 | 65.1 |
| Msa0306840 | MtrunA17_Chr4g0060841 | 46.774 | 62 | 33 | 0 | 11 | 72 | 1 | 62 | 2.67e-14 | 65.9 |
| Msa0306840 | MtrunA17_Chr2g0325971 | 50.847 | 59 | 29 | 0 | 13 | 71 | 10 | 68 | 2.85e-14 | 65.1 |
| Msa0306840 | MtrunA17_Chr4g0052061 | 47.458 | 59 | 31 | 0 | 11 | 69 | 1 | 59 | 4.19e-14 | 63.2 |
| Msa0306840 | MtrunA17_Chr1g0206991 | 51.786 | 56 | 27 | 0 | 13 | 68 | 10 | 65 | 5.06e-14 | 63.5 |
| Msa0306840 | MtrunA17_Chr3g0111841 | 52.941 | 51 | 24 | 0 | 18 | 68 | 2 | 52 | 6.30e-14 | 60.8 |
| Msa0306840 | MtrunA17_Chr4g0071601 | 41.667 | 84 | 49 | 0 | 1 | 84 | 1 | 84 | 9.62e-14 | 62.8 |
| Msa0306840 | MtrunA17_Chr5g0422941 | 53.571 | 56 | 26 | 0 | 13 | 68 | 10 | 65 | 9.79e-14 | 63.5 |
| Msa0306840 | MtrunA17_Chr6g0457851 | 50.000 | 52 | 26 | 0 | 9 | 60 | 9 | 60 | 6.97e-13 | 62.0 |
| Msa0306840 | MtrunA17_Chr3g0119901 | 46.032 | 63 | 34 | 0 | 6 | 68 | 3 | 65 | 1.04e-12 | 60.5 |
| Msa0306840 | MtrunA17_Chr8g0356071 | 42.254 | 71 | 40 | 1 | 11 | 81 | 1 | 70 | 1.23e-12 | 59.7 |
| Msa0306840 | MtrunA17_Chr3g0089151 | 42.029 | 69 | 40 | 0 | 13 | 81 | 10 | 78 | 2.02e-12 | 58.2 |
| Msa0306840 | MtrunA17_Chr1g0187351 | 55.319 | 47 | 21 | 0 | 21 | 67 | 1 | 47 | 2.16e-12 | 56.6 |
| Msa0306840 | MtrunA17_Chr3g0085241 | 45.161 | 62 | 34 | 0 | 7 | 68 | 36 | 97 | 3.05e-12 | 59.7 |
| Msa0306840 | MtrunA17_Chr2g0300441 | 47.368 | 57 | 30 | 0 | 15 | 71 | 12 | 68 | 3.34e-12 | 59.3 |
| Msa0306840 | MtrunA17_Chr1g0206691 | 54.167 | 48 | 22 | 0 | 21 | 68 | 1 | 48 | 1.18e-11 | 57.8 |
| Msa0306840 | MtrunA17_Chr6g0449851 | 48.000 | 50 | 26 | 0 | 11 | 60 | 1 | 50 | 3.95e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306840 | AT4G11880.2 | 90.476 | 63 | 6 | 0 | 11 | 73 | 1 | 63 | 4.87e-37 | 122 |
| Msa0306840 | AT4G11880.3 | 90.476 | 63 | 6 | 0 | 11 | 73 | 1 | 63 | 4.87e-37 | 122 |
| Msa0306840 | AT2G45660.2 | 93.333 | 60 | 4 | 0 | 11 | 70 | 1 | 60 | 9.54e-37 | 121 |
| Msa0306840 | AT4G11880.4 | 90.476 | 63 | 6 | 0 | 11 | 73 | 1 | 63 | 1.68e-36 | 122 |
| Msa0306840 | AT4G11880.1 | 90.476 | 63 | 6 | 0 | 11 | 73 | 1 | 63 | 1.68e-36 | 122 |
| Msa0306840 | AT2G45660.1 | 93.333 | 60 | 4 | 0 | 11 | 70 | 1 | 60 | 4.37e-36 | 121 |
| Msa0306840 | AT4G22950.2 | 90.000 | 60 | 6 | 0 | 11 | 70 | 1 | 60 | 2.94e-35 | 118 |
| Msa0306840 | AT4G22950.3 | 90.000 | 60 | 6 | 0 | 11 | 70 | 1 | 60 | 1.94e-34 | 117 |
| Msa0306840 | AT4G22950.1 | 90.000 | 60 | 6 | 0 | 11 | 70 | 1 | 60 | 1.94e-34 | 117 |
| Msa0306840 | AT5G62165.6 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.10e-32 | 110 |
| Msa0306840 | AT5G62165.9 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.10e-32 | 110 |
| Msa0306840 | AT5G62165.7 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.10e-32 | 110 |
| Msa0306840 | AT5G62165.8 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.10e-32 | 110 |
| Msa0306840 | AT5G62165.13 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.10e-32 | 110 |
| Msa0306840 | AT5G62165.17 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.22e-32 | 110 |
| Msa0306840 | AT5G62165.12 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.22e-32 | 110 |
| Msa0306840 | AT5G62165.11 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.22e-32 | 110 |
| Msa0306840 | AT5G62165.14 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.43e-32 | 109 |
| Msa0306840 | AT5G62165.10 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 7.07e-32 | 110 |
| Msa0306840 | AT5G62165.4 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 7.07e-32 | 110 |
| Msa0306840 | AT5G62165.3 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 7.42e-32 | 110 |
| Msa0306840 | AT5G62165.1 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 7.42e-32 | 110 |
| Msa0306840 | AT5G62165.2 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 7.42e-32 | 110 |
| Msa0306840 | AT4G09960.2 | 80.000 | 60 | 12 | 0 | 11 | 70 | 1 | 60 | 1.19e-29 | 105 |
| Msa0306840 | AT4G09960.1 | 80.000 | 60 | 12 | 0 | 11 | 70 | 1 | 60 | 1.50e-29 | 105 |
| Msa0306840 | AT4G09960.6 | 80.000 | 60 | 12 | 0 | 11 | 70 | 2 | 61 | 1.56e-29 | 105 |
| Msa0306840 | AT4G09960.5 | 80.000 | 60 | 12 | 0 | 11 | 70 | 11 | 70 | 2.26e-29 | 105 |
| Msa0306840 | AT4G09960.3 | 78.689 | 61 | 13 | 0 | 10 | 70 | 26 | 86 | 3.01e-29 | 105 |
| Msa0306840 | AT3G58780.2 | 75.806 | 62 | 15 | 0 | 10 | 71 | 15 | 76 | 3.32e-29 | 104 |
| Msa0306840 | AT2G42830.1 | 71.642 | 67 | 19 | 0 | 10 | 76 | 15 | 81 | 9.61e-29 | 103 |
| Msa0306840 | AT4G09960.4 | 78.689 | 61 | 13 | 0 | 10 | 70 | 95 | 155 | 9.64e-29 | 105 |
| Msa0306840 | AT2G42830.2 | 71.642 | 67 | 19 | 0 | 10 | 76 | 15 | 81 | 1.01e-28 | 103 |
| Msa0306840 | AT3G58780.1 | 71.642 | 67 | 19 | 0 | 10 | 76 | 15 | 81 | 1.01e-28 | 103 |
| Msa0306840 | AT3G58780.5 | 71.642 | 67 | 19 | 0 | 10 | 76 | 21 | 87 | 1.12e-28 | 103 |
| Msa0306840 | AT3G58780.4 | 68.000 | 75 | 23 | 1 | 2 | 76 | 8 | 81 | 2.31e-28 | 103 |
| Msa0306840 | AT4G18960.1 | 75.000 | 64 | 16 | 0 | 13 | 76 | 19 | 82 | 3.05e-28 | 102 |
| Msa0306840 | AT2G03710.3 | 74.194 | 62 | 16 | 0 | 11 | 72 | 1 | 62 | 3.75e-28 | 100 |
| Msa0306840 | AT1G24260.3 | 74.603 | 63 | 16 | 0 | 11 | 73 | 1 | 63 | 9.99e-28 | 100 |
| Msa0306840 | AT2G45650.1 | 79.661 | 59 | 12 | 0 | 11 | 69 | 1 | 59 | 1.22e-27 | 100 |
| Msa0306840 | AT1G24260.1 | 74.603 | 63 | 16 | 0 | 11 | 73 | 1 | 63 | 1.32e-27 | 100 |
| Msa0306840 | AT1G24260.2 | 74.603 | 63 | 16 | 0 | 11 | 73 | 1 | 63 | 1.38e-27 | 100 |
| Msa0306840 | AT2G03710.2 | 74.194 | 62 | 16 | 0 | 11 | 72 | 1 | 62 | 1.56e-27 | 100 |
| Msa0306840 | AT2G03710.1 | 74.194 | 62 | 16 | 0 | 11 | 72 | 1 | 62 | 1.67e-27 | 100 |
| Msa0306840 | AT5G15800.1 | 73.016 | 63 | 17 | 0 | 11 | 73 | 1 | 63 | 1.78e-27 | 100 |
| Msa0306840 | AT5G51860.2 | 76.667 | 60 | 14 | 0 | 11 | 70 | 1 | 60 | 2.70e-27 | 98.6 |
| Msa0306840 | AT5G51860.1 | 76.667 | 60 | 14 | 0 | 11 | 70 | 1 | 60 | 3.25e-27 | 98.6 |
| Msa0306840 | AT3G02310.2 | 71.429 | 63 | 18 | 0 | 11 | 73 | 1 | 63 | 5.61e-27 | 97.8 |
| Msa0306840 | AT3G02310.1 | 71.429 | 63 | 18 | 0 | 11 | 73 | 1 | 63 | 7.56e-27 | 98.6 |
| Msa0306840 | AT5G51870.2 | 73.770 | 61 | 16 | 0 | 11 | 71 | 1 | 61 | 1.17e-26 | 96.3 |
| Msa0306840 | AT5G51870.5 | 71.875 | 64 | 18 | 0 | 8 | 71 | 21 | 84 | 1.78e-26 | 96.3 |
| Msa0306840 | AT5G51870.1 | 73.770 | 61 | 16 | 0 | 11 | 71 | 1 | 61 | 3.18e-26 | 95.9 |
| Msa0306840 | AT3G57230.2 | 73.333 | 60 | 16 | 0 | 11 | 70 | 1 | 60 | 3.52e-26 | 94.4 |
| Msa0306840 | AT5G15800.2 | 73.016 | 63 | 17 | 0 | 11 | 73 | 1 | 63 | 3.54e-26 | 97.1 |
| Msa0306840 | AT5G51870.4 | 73.770 | 61 | 16 | 0 | 11 | 71 | 1 | 61 | 7.91e-26 | 95.1 |
| Msa0306840 | AT5G51870.3 | 73.770 | 61 | 16 | 0 | 11 | 71 | 11 | 71 | 1.02e-25 | 95.1 |
| Msa0306840 | AT3G57230.1 | 73.333 | 60 | 16 | 0 | 11 | 70 | 1 | 60 | 1.21e-25 | 95.1 |
| Msa0306840 | AT3G57230.4 | 73.333 | 60 | 16 | 0 | 11 | 70 | 1 | 60 | 1.21e-25 | 95.1 |
| Msa0306840 | AT3G58780.3 | 74.194 | 62 | 16 | 0 | 9 | 70 | 14 | 75 | 1.42e-25 | 95.9 |
| Msa0306840 | AT5G13790.1 | 75.000 | 60 | 15 | 0 | 11 | 70 | 1 | 60 | 8.97e-25 | 93.6 |
| Msa0306840 | AT5G13790.2 | 75.000 | 60 | 15 | 0 | 11 | 70 | 1 | 60 | 9.45e-25 | 93.6 |
| Msa0306840 | AT5G60910.1 | 70.000 | 60 | 18 | 0 | 11 | 70 | 1 | 60 | 1.76e-24 | 92.4 |
| Msa0306840 | AT1G71692.1 | 67.797 | 59 | 19 | 0 | 11 | 69 | 1 | 59 | 2.68e-24 | 91.3 |
| Msa0306840 | AT3G61120.1 | 71.186 | 59 | 17 | 0 | 11 | 69 | 1 | 59 | 2.68e-24 | 92.0 |
| Msa0306840 | AT3G57390.3 | 69.492 | 59 | 18 | 0 | 11 | 69 | 1 | 59 | 2.77e-24 | 91.7 |
| Msa0306840 | AT2G14210.1 | 65.152 | 66 | 23 | 0 | 11 | 76 | 1 | 66 | 2.99e-24 | 91.7 |
| Msa0306840 | AT2G14210.2 | 65.152 | 66 | 23 | 0 | 11 | 76 | 1 | 66 | 3.21e-24 | 91.7 |
| Msa0306840 | AT3G30260.1 | 66.667 | 63 | 21 | 0 | 11 | 73 | 1 | 63 | 3.97e-24 | 91.7 |
| Msa0306840 | AT1G69120.2 | 68.333 | 60 | 19 | 0 | 11 | 70 | 1 | 60 | 4.88e-24 | 90.9 |
| Msa0306840 | AT3G57390.1 | 69.492 | 59 | 18 | 0 | 11 | 69 | 1 | 59 | 5.40e-24 | 91.3 |
| Msa0306840 | AT1G69120.1 | 68.333 | 60 | 19 | 0 | 11 | 70 | 1 | 60 | 1.21e-23 | 90.5 |
| Msa0306840 | AT2G22540.3 | 70.000 | 60 | 18 | 0 | 11 | 70 | 1 | 60 | 1.70e-23 | 89.7 |
| Msa0306840 | AT2G22540.1 | 70.000 | 60 | 18 | 0 | 11 | 70 | 1 | 60 | 1.70e-23 | 89.7 |
| Msa0306840 | AT4G37940.3 | 68.333 | 60 | 19 | 0 | 11 | 70 | 1 | 60 | 1.91e-23 | 88.2 |
| Msa0306840 | AT4G37940.4 | 68.333 | 60 | 19 | 0 | 11 | 70 | 1 | 60 | 2.24e-23 | 89.0 |
| Msa0306840 | AT4G24540.1 | 62.687 | 67 | 25 | 0 | 11 | 77 | 1 | 67 | 2.33e-23 | 89.0 |
| Msa0306840 | AT4G37940.1 | 68.333 | 60 | 19 | 0 | 11 | 70 | 1 | 60 | 2.45e-23 | 89.0 |
| Msa0306840 | AT1G26310.1 | 69.492 | 59 | 18 | 0 | 11 | 69 | 1 | 59 | 4.07e-23 | 89.0 |
| Msa0306840 | AT3G54340.1 | 61.905 | 63 | 24 | 0 | 11 | 73 | 1 | 63 | 6.02e-23 | 88.2 |
| Msa0306840 | AT5G23260.1 | 58.824 | 68 | 28 | 0 | 5 | 72 | 11 | 78 | 1.73e-22 | 87.4 |
| Msa0306840 | AT5G23260.4 | 58.824 | 68 | 28 | 0 | 5 | 72 | 11 | 78 | 1.91e-22 | 87.4 |
| Msa0306840 | AT5G10140.2 | 67.797 | 59 | 19 | 0 | 11 | 69 | 1 | 59 | 6.39e-22 | 84.0 |
| Msa0306840 | AT2G22630.1 | 65.000 | 60 | 21 | 0 | 11 | 70 | 1 | 60 | 9.55e-22 | 84.7 |
| Msa0306840 | AT2G22630.2 | 65.000 | 60 | 21 | 0 | 11 | 70 | 1 | 60 | 9.55e-22 | 84.7 |
| Msa0306840 | AT5G10140.4 | 63.492 | 63 | 23 | 0 | 11 | 73 | 1 | 63 | 1.02e-21 | 84.0 |
| Msa0306840 | AT5G10140.3 | 67.797 | 59 | 19 | 0 | 11 | 69 | 1 | 59 | 1.20e-21 | 83.6 |
| Msa0306840 | AT5G10140.1 | 67.797 | 59 | 19 | 0 | 11 | 69 | 1 | 59 | 1.31e-21 | 84.0 |
| Msa0306840 | AT5G65070.4 | 57.143 | 70 | 30 | 0 | 11 | 80 | 1 | 70 | 1.67e-21 | 82.4 |
| Msa0306840 | AT5G65070.1 | 57.143 | 70 | 30 | 0 | 11 | 80 | 1 | 70 | 2.96e-21 | 83.2 |
| Msa0306840 | AT5G23260.3 | 62.903 | 62 | 23 | 0 | 11 | 72 | 1 | 62 | 3.59e-21 | 83.6 |
| Msa0306840 | AT2G22540.2 | 66.667 | 57 | 19 | 0 | 11 | 67 | 1 | 57 | 4.35e-21 | 83.2 |
| Msa0306840 | AT5G23260.2 | 62.903 | 62 | 23 | 0 | 11 | 72 | 1 | 62 | 4.44e-21 | 83.6 |
| Msa0306840 | AT1G22130.1 | 61.905 | 63 | 24 | 0 | 11 | 73 | 1 | 63 | 4.47e-21 | 84.7 |
| Msa0306840 | AT5G20240.2 | 62.069 | 58 | 22 | 0 | 11 | 68 | 1 | 58 | 4.72e-21 | 81.3 |
| Msa0306840 | AT1G77980.1 | 60.317 | 63 | 25 | 0 | 11 | 73 | 1 | 63 | 7.41e-21 | 84.3 |
| Msa0306840 | AT5G65070.2 | 57.143 | 70 | 30 | 0 | 11 | 80 | 1 | 70 | 8.90e-21 | 82.4 |
| Msa0306840 | AT5G65070.5 | 57.143 | 70 | 30 | 0 | 11 | 80 | 1 | 70 | 1.04e-20 | 82.0 |
| Msa0306840 | AT5G20240.1 | 62.069 | 58 | 22 | 0 | 11 | 68 | 1 | 58 | 2.65e-20 | 80.9 |
| Msa0306840 | AT5G65070.3 | 62.712 | 59 | 22 | 0 | 11 | 69 | 1 | 59 | 1.80e-19 | 79.0 |
| Msa0306840 | AT5G65050.2 | 54.545 | 66 | 30 | 0 | 11 | 76 | 1 | 66 | 6.51e-19 | 76.6 |
| Msa0306840 | AT1G77950.3 | 50.000 | 72 | 36 | 0 | 11 | 82 | 1 | 72 | 6.83e-19 | 77.8 |
| Msa0306840 | AT1G77950.2 | 50.000 | 72 | 36 | 0 | 11 | 82 | 1 | 72 | 6.83e-19 | 77.8 |
| Msa0306840 | AT1G77950.1 | 50.000 | 72 | 36 | 0 | 11 | 82 | 1 | 72 | 6.83e-19 | 77.8 |
| Msa0306840 | AT1G77950.4 | 50.000 | 72 | 36 | 0 | 11 | 82 | 1 | 72 | 6.83e-19 | 77.8 |
| Msa0306840 | AT5G65050.1 | 54.545 | 66 | 30 | 0 | 11 | 76 | 1 | 66 | 1.18e-18 | 75.9 |
| Msa0306840 | AT5G65050.5 | 54.545 | 66 | 30 | 0 | 11 | 76 | 1 | 66 | 1.23e-18 | 75.9 |
| Msa0306840 | AT5G65050.3 | 54.545 | 66 | 30 | 0 | 11 | 76 | 1 | 66 | 1.40e-18 | 75.9 |
| Msa0306840 | AT5G65080.3 | 50.704 | 71 | 35 | 0 | 6 | 76 | 3 | 73 | 1.44e-17 | 73.2 |
| Msa0306840 | AT5G65080.2 | 48.611 | 72 | 37 | 0 | 6 | 77 | 3 | 74 | 2.73e-17 | 72.8 |
| Msa0306840 | AT5G65060.2 | 51.515 | 66 | 32 | 0 | 11 | 76 | 1 | 66 | 3.94e-17 | 72.0 |
| Msa0306840 | AT5G65060.3 | 51.515 | 66 | 32 | 0 | 11 | 76 | 1 | 66 | 4.09e-17 | 72.0 |
| Msa0306840 | AT5G65060.1 | 51.515 | 66 | 32 | 0 | 11 | 76 | 1 | 66 | 4.16e-17 | 72.0 |
| Msa0306840 | AT1G31140.1 | 55.000 | 60 | 27 | 0 | 11 | 70 | 1 | 60 | 5.99e-17 | 72.0 |
| Msa0306840 | AT1G31140.2 | 55.000 | 60 | 27 | 0 | 11 | 70 | 1 | 60 | 6.32e-17 | 72.0 |
| Msa0306840 | AT1G18750.4 | 51.613 | 62 | 30 | 0 | 11 | 72 | 1 | 62 | 8.37e-17 | 73.6 |
| Msa0306840 | AT1G18750.1 | 51.613 | 62 | 30 | 0 | 11 | 72 | 1 | 62 | 8.61e-17 | 73.6 |
| Msa0306840 | AT1G18750.3 | 51.613 | 62 | 30 | 0 | 11 | 72 | 1 | 62 | 9.12e-17 | 73.6 |
| Msa0306840 | AT4G37435.1 | 57.895 | 57 | 24 | 0 | 11 | 67 | 1 | 57 | 1.54e-16 | 70.5 |
| Msa0306840 | AT3G66656.1 | 51.724 | 58 | 28 | 0 | 11 | 68 | 1 | 58 | 1.36e-15 | 67.8 |
| Msa0306840 | AT1G01530.1 | 50.820 | 61 | 30 | 0 | 8 | 68 | 3 | 63 | 1.51e-15 | 68.9 |
| Msa0306840 | AT2G03060.3 | 50.000 | 62 | 31 | 0 | 11 | 72 | 1 | 62 | 2.93e-15 | 69.3 |
| Msa0306840 | AT2G03060.7 | 50.000 | 62 | 31 | 0 | 11 | 72 | 1 | 62 | 2.93e-15 | 69.3 |
| Msa0306840 | AT2G03060.1 | 50.000 | 62 | 31 | 0 | 11 | 72 | 1 | 62 | 2.93e-15 | 69.3 |
| Msa0306840 | AT2G03060.2 | 50.000 | 62 | 31 | 0 | 11 | 72 | 1 | 62 | 5.04e-15 | 68.6 |
| Msa0306840 | AT2G34440.1 | 50.000 | 58 | 29 | 0 | 11 | 68 | 1 | 58 | 5.49e-15 | 66.2 |
| Msa0306840 | AT1G77080.5 | 52.857 | 70 | 33 | 0 | 11 | 80 | 1 | 70 | 9.84e-15 | 65.5 |
| Msa0306840 | AT1G77080.11 | 52.857 | 70 | 33 | 0 | 11 | 80 | 1 | 70 | 1.23e-14 | 65.5 |
| Msa0306840 | AT5G60440.1 | 50.820 | 61 | 30 | 0 | 8 | 68 | 3 | 63 | 2.03e-14 | 66.6 |
| Msa0306840 | AT1G77080.4 | 52.857 | 70 | 33 | 0 | 11 | 80 | 1 | 70 | 2.32e-14 | 65.1 |
| Msa0306840 | AT4G36590.1 | 57.143 | 56 | 24 | 0 | 13 | 68 | 8 | 63 | 2.59e-14 | 65.9 |
| Msa0306840 | AT1G77080.12 | 55.556 | 63 | 28 | 0 | 11 | 73 | 1 | 63 | 4.09e-14 | 63.5 |
| Msa0306840 | AT1G69540.2 | 42.857 | 70 | 40 | 0 | 11 | 80 | 1 | 70 | 4.43e-14 | 65.9 |
| Msa0306840 | AT1G77080.8 | 52.857 | 70 | 33 | 0 | 11 | 80 | 1 | 70 | 5.38e-14 | 64.3 |
| Msa0306840 | AT1G69540.1 | 42.857 | 70 | 40 | 0 | 11 | 80 | 1 | 70 | 5.51e-14 | 65.5 |
| Msa0306840 | AT1G77080.2 | 55.556 | 63 | 28 | 0 | 11 | 73 | 1 | 63 | 8.33e-14 | 63.5 |
| Msa0306840 | AT1G72350.1 | 54.098 | 61 | 28 | 0 | 13 | 73 | 44 | 104 | 1.61e-13 | 63.2 |
| Msa0306840 | AT2G24840.1 | 52.542 | 59 | 28 | 0 | 9 | 67 | 60 | 118 | 5.88e-13 | 62.0 |
| Msa0306840 | AT1G65360.1 | 45.902 | 61 | 33 | 0 | 8 | 68 | 3 | 63 | 6.04e-13 | 61.6 |
| Msa0306840 | AT2G26320.1 | 47.059 | 68 | 35 | 1 | 8 | 75 | 14 | 80 | 2.51e-12 | 57.8 |
| Msa0306840 | AT3G04100.1 | 46.429 | 56 | 30 | 0 | 15 | 70 | 17 | 72 | 7.40e-12 | 58.5 |
| Msa0306840 | AT1G47760.1 | 46.552 | 58 | 31 | 0 | 11 | 68 | 1 | 58 | 9.06e-12 | 58.2 |
| Msa0306840 | AT1G29962.1 | 47.692 | 65 | 32 | 1 | 8 | 70 | 2 | 66 | 4.78e-11 | 56.2 |
| Msa0306840 | AT1G28460.1 | 49.123 | 57 | 29 | 0 | 13 | 69 | 9 | 65 | 9.26e-11 | 55.5 |
Find 21 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCATTTATTTCTTAATA+TGG | 0.167043 | 2_3:+65986638 | Msa0306840:five_prime_UTR |
| TTTATAGGTGCTGTGTATTT+TGG | 0.193681 | 2_3:+65989872 | Msa0306840:CDS |
| CTTAATATGGTGGGGTAAGA+TGG | 0.331970 | 2_3:+65986651 | Msa0306840:five_prime_UTR |
| TTCAGATCCGTTGGATTTAT+AGG | 0.350435 | 2_3:+65989857 | Msa0306840:intron |
| ACATTCTCAAAGAGGAGAAA+TGG | 0.421788 | 2_3:+65987530 | Msa0306840:CDS |
| CATTTATTTCTTAATATGGT+GGG | 0.422909 | 2_3:+65986642 | Msa0306840:five_prime_UTR |
| TTAATATGGTGGGGTAAGAT+GGG | 0.445741 | 2_3:+65986652 | Msa0306840:five_prime_UTR |
| TGGTGGGGTAAGATGGGGTC+AGG | 0.482684 | 2_3:+65986658 | Msa0306840:five_prime_UTR |
| TCATTTATTTCTTAATATGG+TGG | 0.491560 | 2_3:+65986641 | Msa0306840:five_prime_UTR |
| TGTTTCTGTTTCAGATCCGT+TGG | 0.495172 | 2_3:+65989848 | Msa0306840:intron |
| TTTATGAATTTGCTAGCTCT+AGG | 0.521973 | 2_3:+65987633 | Msa0306840:CDS |
| TGGGGTCAGGTTGATTAATG+AGG | 0.540818 | 2_3:+65986671 | Msa0306840:exon |
| ATTTATTTCTTAATATGGTG+GGG | 0.544084 | 2_3:+65986643 | Msa0306840:five_prime_UTR |
| AATTCATAAAGCCTCCCTCT+TGG | 0.547865 | 2_3:-65987620 | None:intergenic |
| TCAGGTTGATTAATGAGGAA+AGG | 0.559252 | 2_3:+65986676 | Msa0306840:exon |
| ATCAGTGTTGTGTGATGCTG+AGG | 0.567431 | 2_3:+65987577 | Msa0306840:CDS |
| GGCAAGTAACATTCTCAAAG+AGG | 0.594159 | 2_3:+65987522 | Msa0306840:CDS |
| CACAGCACCTATAAATCCAA+CGG | 0.613739 | 2_3:-65989864 | None:intergenic |
| ACACAACACTGATAACTCAA+AGG | 0.620897 | 2_3:-65987567 | None:intergenic |
| TAATATGGTGGGGTAAGATG+GGG | 0.636610 | 2_3:+65986653 | Msa0306840:five_prime_UTR |
| GTATAGAGAACGCAACAAGT+AGG | 0.642404 | 2_3:+65987501 | Msa0306840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCTTGAAAAAATTAAA+TGG | - | chr2_3:65987079-65987098 | None:intergenic | 10.0% |
| !!! | TACTTTTTTTTTTTTTTTGA+AGG | + | chr2_3:65988468-65988487 | Msa0306840:intron | 10.0% |
| !!! | ATACTGTAATTATTATATTT+TGG | + | chr2_3:65988707-65988726 | Msa0306840:intron | 10.0% |
| !! | GAATTTGATATTAAAATTAA+AGG | - | chr2_3:65988913-65988932 | None:intergenic | 10.0% |
| !! | TTAAATCCATAATATAATAA+AGG | - | chr2_3:65988935-65988954 | None:intergenic | 10.0% |
| !! | AAAAAAAATAAAAAATCCAA+TGG | - | chr2_3:65989820-65989839 | None:intergenic | 10.0% |
| !!! | TGGATTTTTTATTTTTTTTA+AGG | + | chr2_3:65989821-65989840 | Msa0306840:intron | 10.0% |
| !!! | GGATTTTTTATTTTTTTTAA+GGG | + | chr2_3:65989822-65989841 | Msa0306840:intron | 10.0% |
| !!! | CAATCATTTATTTCTTAATA+TGG | + | chr2_3:65986638-65986657 | Msa0306840:five_prime_UTR | 15.0% |
| !! | TAAAAAATAAATAAGAGTCA+AGG | - | chr2_3:65986836-65986855 | None:intergenic | 15.0% |
| !!! | TTTCTTTTATTTTTCCAATT+TGG | + | chr2_3:65986927-65986946 | Msa0306840:intron | 15.0% |
| !!! | TTTTTGTTATGAATTGAAAT+AGG | + | chr2_3:65987352-65987371 | Msa0306840:intron | 15.0% |
| !! | ATTAATTAAGTCGAAAAAAA+AGG | - | chr2_3:65987664-65987683 | None:intergenic | 15.0% |
| !! | TGTTAGATTAAATATTTAAG+AGG | + | chr2_3:65987805-65987824 | Msa0306840:intron | 15.0% |
| !! | GTTAGATTAAATATTTAAGA+GGG | + | chr2_3:65987806-65987825 | Msa0306840:intron | 15.0% |
| !!! | TTTTTATTGACTAAACAAAT+AGG | + | chr2_3:65987926-65987945 | Msa0306840:intron | 15.0% |
| !! | TGATAACATTAAGTTATATA+GGG | + | chr2_3:65988413-65988432 | Msa0306840:intron | 15.0% |
| !! | AATGCAAATATATATATCAA+AGG | - | chr2_3:65988513-65988532 | None:intergenic | 15.0% |
| !! | TTTAAAAAATAATGTGTACT+TGG | + | chr2_3:65988531-65988550 | Msa0306840:intron | 15.0% |
| !!! | TTTAAGTTACATTTTCATTT+TGG | - | chr2_3:65988796-65988815 | None:intergenic | 15.0% |
| !! | CAAATTCCTTTATTATATTA+TGG | + | chr2_3:65988926-65988945 | Msa0306840:intron | 15.0% |
| !! | ATAAAGATTCTTTACATTTA+CGG | - | chr2_3:65988968-65988987 | None:intergenic | 15.0% |
| !! | ATCATTAATAGTAACAATAT+TGG | + | chr2_3:65989186-65989205 | Msa0306840:intron | 15.0% |
| !!! | TAGTTAATAACTTAAGATTT+TGG | + | chr2_3:65989536-65989555 | Msa0306840:intron | 15.0% |
| !!! | AGTTAATAACTTAAGATTTT+GGG | + | chr2_3:65989537-65989556 | Msa0306840:intron | 15.0% |
| !!! | TCATTTATTTCTTAATATGG+TGG | + | chr2_3:65986641-65986660 | Msa0306840:five_prime_UTR | 20.0% |
| !!! | CATTTATTTCTTAATATGGT+GGG | + | chr2_3:65986642-65986661 | Msa0306840:five_prime_UTR | 20.0% |
| !!! | ATTTATTTCTTAATATGGTG+GGG | + | chr2_3:65986643-65986662 | Msa0306840:five_prime_UTR | 20.0% |
| !!! | ATTATGTATCACTACTTTTT+TGG | + | chr2_3:65986780-65986799 | Msa0306840:intron | 20.0% |
| !!! | TTATGTATCACTACTTTTTT+GGG | + | chr2_3:65986781-65986800 | Msa0306840:intron | 20.0% |
| !! | ATAAAAGAAAAAATGAACCA+AGG | - | chr2_3:65986917-65986936 | None:intergenic | 20.0% |
| !! | GAATTATATCTCATAAAAGA+AGG | - | chr2_3:65987014-65987033 | None:intergenic | 20.0% |
| !!! | CTTTTATGAGATATAATTCT+TGG | + | chr2_3:65987015-65987034 | Msa0306840:intron | 20.0% |
| !! | AAAATAGATTCCTAGAAAAA+GGG | - | chr2_3:65987053-65987072 | None:intergenic | 20.0% |
| !! | TAAAATAGATTCCTAGAAAA+AGG | - | chr2_3:65987054-65987073 | None:intergenic | 20.0% |
| !! | TTAAGATCTAGAAAACTATA+AGG | - | chr2_3:65987264-65987283 | None:intergenic | 20.0% |
| !!! | TAGTTTTCTAGATCTTAAAA+AGG | + | chr2_3:65987266-65987285 | Msa0306840:intron | 20.0% |
| !! | AGAGAAAAGAAAAGAAAAAA+TGG | + | chr2_3:65987454-65987473 | Msa0306840:CDS | 20.0% |
| !! | TTCTAATTCCAATGTTATAT+TGG | + | chr2_3:65987862-65987881 | Msa0306840:intron | 20.0% |
| !! | TTATGATTCCAATATAACAT+TGG | - | chr2_3:65987873-65987892 | None:intergenic | 20.0% |
| !! | GGAAATTTATATATATGAGT+TGG | - | chr2_3:65987965-65987984 | None:intergenic | 20.0% |
| !! | TTTGTGATTTATATAATCGA+AGG | - | chr2_3:65987986-65988005 | None:intergenic | 20.0% |
| !! | GAAAAACATGTTATATAGTA+TGG | - | chr2_3:65988086-65988105 | None:intergenic | 20.0% |
| !!! | CATATATCAAGTTTTGATTT+CGG | - | chr2_3:65988323-65988342 | None:intergenic | 20.0% |
| !! | CTGATAACATTAAGTTATAT+AGG | + | chr2_3:65988412-65988431 | Msa0306840:intron | 20.0% |
| !!! | TTATATTTTGGTTTTCGTAA+AGG | + | chr2_3:65988719-65988738 | Msa0306840:intron | 20.0% |
| !!! | TATATTTTGGTTTTCGTAAA+GGG | + | chr2_3:65988720-65988739 | Msa0306840:intron | 20.0% |
| !! | AATCATACTCTTGTATTATT+AGG | + | chr2_3:65989127-65989146 | Msa0306840:intron | 20.0% |
| !! | ATTAATCATAACCTAAACTA+TGG | + | chr2_3:65989155-65989174 | Msa0306840:intron | 20.0% |
| !! | TTAATCATAACCTAAACTAT+GGG | + | chr2_3:65989156-65989175 | Msa0306840:intron | 20.0% |
| !!! | CTTGACACTAATATTTTTAA+TGG | - | chr2_3:65989745-65989764 | None:intergenic | 20.0% |
| ! | ACATAATTGAGGTAAATTCA+AGG | - | chr2_3:65986767-65986786 | None:intergenic | 25.0% |
| ! | AAAGTAGTGATACATAATTG+AGG | - | chr2_3:65986778-65986797 | None:intergenic | 25.0% |
| !!! | TATGTATCACTACTTTTTTG+GGG | + | chr2_3:65986782-65986801 | Msa0306840:intron | 25.0% |
| ! | TATATCTCATAAAAGAAGGT+GGG | - | chr2_3:65987010-65987029 | None:intergenic | 25.0% |
| ! | TTATATCTCATAAAAGAAGG+TGG | - | chr2_3:65987011-65987030 | None:intergenic | 25.0% |
| ! | TATGAGATATAATTCTTGGT+AGG | + | chr2_3:65987019-65987038 | Msa0306840:intron | 25.0% |
| !! | AAATGGACGGAAAATTTTAA+GGG | - | chr2_3:65987196-65987215 | None:intergenic | 25.0% |
| ! | TTTAAACCTTGTAAGGAAAA+GGG | - | chr2_3:65987305-65987324 | None:intergenic | 25.0% |
| ! | ATTTAAACCTTGTAAGGAAA+AGG | - | chr2_3:65987306-65987325 | None:intergenic | 25.0% |
| ! | AACACAATTTAAACCTTGTA+AGG | - | chr2_3:65987312-65987331 | None:intergenic | 25.0% |
| !! | TAAATTGTGTTTTTCCTTCT+TGG | + | chr2_3:65987321-65987340 | Msa0306840:intron | 25.0% |
| ! | ACAACACAACAACAAAAATT+AGG | - | chr2_3:65987425-65987444 | None:intergenic | 25.0% |
| !! | TCATGCTAATCTTTTATTGT+TGG | - | chr2_3:65988272-65988291 | None:intergenic | 25.0% |
| ! | TATAACTTGATGTTATGGTT+GGG | - | chr2_3:65988386-65988405 | None:intergenic | 25.0% |
| ! | ATATAACTTGATGTTATGGT+TGG | - | chr2_3:65988387-65988406 | None:intergenic | 25.0% |
| ! | ACAGATATAACTTGATGTTA+TGG | - | chr2_3:65988391-65988410 | None:intergenic | 25.0% |
| ! | AATAATAACCTCATTTCCAA+AGG | + | chr2_3:65988868-65988887 | Msa0306840:intron | 25.0% |
| ! | CAGAATTATATAACAACCTT+TGG | - | chr2_3:65988887-65988906 | None:intergenic | 25.0% |
| ! | TAATCATAACCTAAACTATG+GGG | + | chr2_3:65989157-65989176 | Msa0306840:intron | 25.0% |
| ! | AATAGTAACAATATTGGTGA+AGG | + | chr2_3:65989192-65989211 | Msa0306840:intron | 25.0% |
| ! | ACCATTCCATTTGATAAAAA+TGG | + | chr2_3:65989468-65989487 | Msa0306840:intron | 25.0% |
| !!! | TCCATTTTTATCAAATGGAA+TGG | - | chr2_3:65989472-65989491 | None:intergenic | 25.0% |
| !!! | CAACATCCATTTTTATCAAA+TGG | - | chr2_3:65989477-65989496 | None:intergenic | 25.0% |
| !!! | GACACTAATATTTTTAATGG+CGG | - | chr2_3:65989742-65989761 | None:intergenic | 25.0% |
| ! | AAAAATCCAATGGTTCTTAA+AGG | - | chr2_3:65989810-65989829 | None:intergenic | 25.0% |
| GTAAATTCAAGGAAAAGGAT+TGG | - | chr2_3:65986756-65986775 | None:intergenic | 30.0% | |
| TTGAGGTAAATTCAAGGAAA+AGG | - | chr2_3:65986761-65986780 | None:intergenic | 30.0% | |
| AGGAAAAGAATGGAAGAAAA+GGG | - | chr2_3:65986859-65986878 | None:intergenic | 30.0% | |
| AAGGAAAAGAATGGAAGAAA+AGG | - | chr2_3:65986860-65986879 | None:intergenic | 30.0% | |
| ! | TTCCATTCTTTTCCTTTTCT+AGG | + | chr2_3:65986864-65986883 | Msa0306840:intron | 30.0% |
| AGAAAAAATGAACCAAGGTA+CGG | - | chr2_3:65986912-65986931 | None:intergenic | 30.0% | |
| AAGGGTGATTATATGAATGA+TGG | - | chr2_3:65987178-65987197 | None:intergenic | 30.0% | |
| ! | CAAATGGACGGAAAATTTTA+AGG | - | chr2_3:65987197-65987216 | None:intergenic | 30.0% |
| ! | CTTAAAATTTTCCGTCCATT+TGG | + | chr2_3:65987195-65987214 | Msa0306840:intron | 30.0% |
| ACTCAATAAAACCAAATGGA+CGG | - | chr2_3:65987209-65987228 | None:intergenic | 30.0% | |
| TACCACTCAATAAAACCAAA+TGG | - | chr2_3:65987213-65987232 | None:intergenic | 30.0% | |
| AGGAAAAGGGATGAAAATAT+TGG | - | chr2_3:65987292-65987311 | None:intergenic | 30.0% | |
| AGAAAAGAAAAAATGGTGAG+AGG | + | chr2_3:65987461-65987480 | Msa0306840:CDS | 30.0% | |
| ! | TTATTGTTTTCTCACCAAGA+GGG | + | chr2_3:65987606-65987625 | Msa0306840:CDS | 30.0% |
| !! | TTTATGAATTTGCTAGCTCT+AGG | + | chr2_3:65987633-65987652 | Msa0306840:CDS | 30.0% |
| TTGTGTGATTGCATCTAATA+AGG | + | chr2_3:65987699-65987718 | Msa0306840:intron | 30.0% | |
| TATTTAAGAGGGCTAATAAG+AGG | + | chr2_3:65987817-65987836 | Msa0306840:intron | 30.0% | |
| GAAAAGCCACAAAAAATTTC+AGG | - | chr2_3:65987845-65987864 | None:intergenic | 30.0% | |
| TAAATCTCTTAGAGTGTGTT+TGG | + | chr2_3:65988006-65988025 | Msa0306840:intron | 30.0% | |
| ATAACTTGATGTTATGGTTG+GGG | - | chr2_3:65988385-65988404 | None:intergenic | 30.0% | |
| TATTGATCATACGATATTGC+AGG | - | chr2_3:65988690-65988709 | None:intergenic | 30.0% | |
| TTACCATCACAGATATAATG+CGG | + | chr2_3:65988764-65988783 | Msa0306840:intron | 30.0% | |
| ! | TATAACAACCTTTGGAAATG+AGG | - | chr2_3:65988879-65988898 | None:intergenic | 30.0% |
| ! | AACCATCATTTGTTAGTTTG+AGG | + | chr2_3:65989276-65989295 | Msa0306840:intron | 30.0% |
| !! | TTTTGGGTAACATGTGATAT+CGG | + | chr2_3:65989553-65989572 | Msa0306840:intron | 30.0% |
| TGATATCGGAATCAATTAAG+TGG | + | chr2_3:65989567-65989586 | Msa0306840:intron | 30.0% | |
| GAACTAACAAACAACTACAA+AGG | - | chr2_3:65989612-65989631 | None:intergenic | 30.0% | |
| ! | TTCTAGCTGAAATTTGAACT+TGG | + | chr2_3:65989777-65989796 | Msa0306840:intron | 30.0% |
| !! | TTTATAGGTGCTGTGTATTT+TGG | + | chr2_3:65989872-65989891 | Msa0306840:CDS | 30.0% |
| ! | TTAATATGGTGGGGTAAGAT+GGG | + | chr2_3:65986652-65986671 | Msa0306840:five_prime_UTR | 35.0% |
| !! | TCAGGTTGATTAATGAGGAA+AGG | + | chr2_3:65986676-65986695 | Msa0306840:exon | 35.0% |
| GTTGATTAATGAGGAAAGGT+AGG | + | chr2_3:65986680-65986699 | Msa0306840:intron | 35.0% | |
| TCAAGGAAAAGGATTGGATT+TGG | - | chr2_3:65986750-65986769 | None:intergenic | 35.0% | |
| TGCCTAGAAAAGGAAAAGAA+TGG | - | chr2_3:65986869-65986888 | None:intergenic | 35.0% | |
| ! | AATCTGCTTCATTTTGTTGC+TGG | + | chr2_3:65986954-65986973 | Msa0306840:intron | 35.0% |
| !!! | GTCCATTTGGTTTTATTGAG+TGG | + | chr2_3:65987208-65987227 | Msa0306840:intron | 35.0% |
| ! | TTTCATCCCTTTTCCTTACA+AGG | + | chr2_3:65987296-65987315 | Msa0306840:intron | 35.0% |
| ! | TGTGTTTTTCCTTCTTGGTT+AGG | + | chr2_3:65987326-65987345 | Msa0306840:intron | 35.0% |
| CAAAAAAGTCCTAACCAAGA+AGG | - | chr2_3:65987338-65987357 | None:intergenic | 35.0% | |
| ACATTCTCAAAGAGGAGAAA+TGG | + | chr2_3:65987530-65987549 | Msa0306840:CDS | 35.0% | |
| ACACAACACTGATAACTCAA+AGG | - | chr2_3:65987570-65987589 | None:intergenic | 35.0% | |
| ! | CTTATTGTTTTCTCACCAAG+AGG | + | chr2_3:65987605-65987624 | Msa0306840:CDS | 35.0% |
| AGATGCAATCACACAATTTG+AGG | - | chr2_3:65987695-65987714 | None:intergenic | 35.0% | |
| TTAGAGTGTGTTTGGATTGA+GGG | + | chr2_3:65988014-65988033 | Msa0306840:intron | 35.0% | |
| TTATTGTTGGTGTGACCTTA+GGG | - | chr2_3:65988259-65988278 | None:intergenic | 35.0% | |
| TTTATTGTTGGTGTGACCTT+AGG | - | chr2_3:65988260-65988279 | None:intergenic | 35.0% | |
| TAACTTGATGTTATGGTTGG+GGG | - | chr2_3:65988384-65988403 | None:intergenic | 35.0% | |
| TATATAGGGTTGAAGTAGCA+CGG | + | chr2_3:65988427-65988446 | Msa0306840:intron | 35.0% | |
| GATATTGATCCCCATAGTTT+AGG | - | chr2_3:65989169-65989188 | None:intergenic | 35.0% | |
| TGCCTCAAACTAACAAATGA+TGG | - | chr2_3:65989281-65989300 | None:intergenic | 35.0% | |
| ATCGTATACCATACGTTGTT+GGG | - | chr2_3:65989376-65989395 | None:intergenic | 35.0% | |
| AATCGTATACCATACGTTGT+TGG | - | chr2_3:65989377-65989396 | None:intergenic | 35.0% | |
| CATTCAATCAAATCAACCCT+TGG | + | chr2_3:65989423-65989442 | Msa0306840:intron | 35.0% | |
| AATCAAATCAACCCTTGGAT+TGG | + | chr2_3:65989428-65989447 | Msa0306840:intron | 35.0% | |
| ATCAAATCAACCCTTGGATT+GGG | + | chr2_3:65989429-65989448 | Msa0306840:intron | 35.0% | |
| TAAAGATACACCCAATCCAA+GGG | - | chr2_3:65989442-65989461 | None:intergenic | 35.0% | |
| ATAAAGATACACCCAATCCA+AGG | - | chr2_3:65989443-65989462 | None:intergenic | 35.0% | |
| GATTGGGTGTATCTTTATAG+AGG | + | chr2_3:65989445-65989464 | Msa0306840:intron | 35.0% | |
| AAGTCAAGAGCTAACAGAAA+TGG | - | chr2_3:65989682-65989701 | None:intergenic | 35.0% | |
| TTCAGATCCGTTGGATTTAT+AGG | + | chr2_3:65989857-65989876 | Msa0306840:intron | 35.0% | |
| ! | CTTAATATGGTGGGGTAAGA+TGG | + | chr2_3:65986651-65986670 | Msa0306840:five_prime_UTR | 40.0% |
| ! | TAATATGGTGGGGTAAGATG+GGG | + | chr2_3:65986653-65986672 | Msa0306840:five_prime_UTR | 40.0% |
| TAAAGGGTTGTGCCTAGAAA+AGG | - | chr2_3:65986879-65986898 | None:intergenic | 40.0% | |
| GTACGGATAGGAGGAATAAA+GGG | - | chr2_3:65986895-65986914 | None:intergenic | 40.0% | |
| AAATGAACCAAGGTACGGAT+AGG | - | chr2_3:65986907-65986926 | None:intergenic | 40.0% | |
| GAAGCAGATTTGCACCAAAT+TGG | - | chr2_3:65986944-65986963 | None:intergenic | 40.0% | |
| ! | GGTGTTTAGACCCTTTTTCT+AGG | + | chr2_3:65987040-65987059 | Msa0306840:intron | 40.0% |
| GTATAGAGAACGCAACAAGT+AGG | + | chr2_3:65987501-65987520 | Msa0306840:CDS | 40.0% | |
| GGCAAGTAACATTCTCAAAG+AGG | + | chr2_3:65987522-65987541 | Msa0306840:CDS | 40.0% | |
| AATTCATAAAGCCTCCCTCT+TGG | - | chr2_3:65987623-65987642 | None:intergenic | 40.0% | |
| !!! | GAGGAGCCTGAAATTTTTTG+TGG | + | chr2_3:65987836-65987855 | Msa0306840:intron | 40.0% |
| CTTAGAGTGTGTTTGGATTG+AGG | + | chr2_3:65988013-65988032 | Msa0306840:intron | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr2_3:65988020-65988039 | Msa0306840:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr2_3:65988024-65988043 | Msa0306840:intron | 40.0% | |
| TGATCATACGATATTGCAGG+AGG | - | chr2_3:65988687-65988706 | None:intergenic | 40.0% | |
| ACACCGCATTATATCTGTGA+TGG | - | chr2_3:65988770-65988789 | None:intergenic | 40.0% | |
| AAGTGGTTGTCCAATGCTTT+AGG | + | chr2_3:65989584-65989603 | Msa0306840:intron | 40.0% | |
| TACAAAGGAGCCTAAAGCAT+TGG | - | chr2_3:65989597-65989616 | None:intergenic | 40.0% | |
| ! | GCTTCACCTTTAAGAACCAT+TGG | + | chr2_3:65989801-65989820 | Msa0306840:intron | 40.0% |
| ! | TGTTTCTGTTTCAGATCCGT+TGG | + | chr2_3:65989848-65989867 | Msa0306840:intron | 40.0% |
| CACAGCACCTATAAATCCAA+CGG | - | chr2_3:65989867-65989886 | None:intergenic | 40.0% | |
| !! | TGGGGTCAGGTTGATTAATG+AGG | + | chr2_3:65986671-65986690 | Msa0306840:exon | 45.0% |
| GGTACGGATAGGAGGAATAA+AGG | - | chr2_3:65986896-65986915 | None:intergenic | 45.0% | |
| TATTCCTCCTATCCGTACCT+TGG | + | chr2_3:65986897-65986916 | Msa0306840:intron | 45.0% | |
| ATCAGTGTTGTGTGATGCTG+AGG | + | chr2_3:65987577-65987596 | Msa0306840:CDS | 45.0% | |
| ! | TTGTTTTCTCACCAAGAGGG+AGG | + | chr2_3:65987609-65987628 | Msa0306840:CDS | 45.0% |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr2_3:65988023-65988042 | Msa0306840:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr2_3:65988025-65988044 | Msa0306840:intron | 45.0% | |
| TTTGGATGAGGGTTTAGGAG+GGG | - | chr2_3:65988232-65988251 | None:intergenic | 45.0% | |
| GTTTGGATGAGGGTTTAGGA+GGG | - | chr2_3:65988233-65988252 | None:intergenic | 45.0% | |
| TGTTTGGATGAGGGTTTAGG+AGG | - | chr2_3:65988234-65988253 | None:intergenic | 45.0% | |
| GTGTGTTTGGATGAGGGTTT+AGG | - | chr2_3:65988237-65988256 | None:intergenic | 45.0% | |
| CTTAGGGTGTGTTTGGATGA+GGG | - | chr2_3:65988243-65988262 | None:intergenic | 45.0% | |
| CTTTGACACCCAACAACGTA+TGG | + | chr2_3:65989365-65989384 | Msa0306840:intron | 45.0% | |
| AGAAATGGCTGCCTCAACAA+GGG | - | chr2_3:65989667-65989686 | None:intergenic | 45.0% | |
| !!! | TATTTTTCATTTTTAAATTA+CGG | - | chr2_3:65988193-65988212 | None:intergenic | 5.0% |
| !!! | ATTTTTTATGAATATAATAA+TGG | - | chr2_3:65989341-65989360 | None:intergenic | 5.0% |
| TGAACCAAGGTACGGATAGG+AGG | - | chr2_3:65986904-65986923 | None:intergenic | 50.0% | |
| AGGGTTTAGGAGGGGAATGA+AGG | + | chr2_3:65988033-65988052 | Msa0306840:intron | 50.0% | |
| GGGTTTAGGAGGGGAATGAA+GGG | + | chr2_3:65988034-65988053 | Msa0306840:intron | 50.0% | |
| GGTTTAGGAGGGGAATGAAG+GGG | + | chr2_3:65988035-65988054 | Msa0306840:intron | 50.0% | |
| ATGAGGGTTTAGGAGGGGAA+GGG | - | chr2_3:65988227-65988246 | None:intergenic | 50.0% | |
| CCTTAGGGTGTGTTTGGATG+AGG | - | chr2_3:65988244-65988263 | None:intergenic | 50.0% | |
| CCTCATCCAAACACACCCTA+AGG | + | chr2_3:65988241-65988260 | Msa0306840:intron | 50.0% | |
| GTGTGACCTTAGGGTGTGTT+TGG | - | chr2_3:65988250-65988269 | None:intergenic | 50.0% | |
| ! | GTTATGGTTGGGGGTGCAAA+GGG | - | chr2_3:65988375-65988394 | None:intergenic | 50.0% |
| ! | TGTTATGGTTGGGGGTGCAA+AGG | - | chr2_3:65988376-65988395 | None:intergenic | 50.0% |
| TGCCTCAACAAGGGCAAGAA+CGG | - | chr2_3:65989658-65989677 | None:intergenic | 50.0% | |
| CAGAAATGGCTGCCTCAACA+AGG | - | chr2_3:65989668-65989687 | None:intergenic | 50.0% | |
| GGTTTAGGAGGGGAAGGGAT+GGG | - | chr2_3:65988222-65988241 | None:intergenic | 55.0% | |
| GATGAGGGTTTAGGAGGGGA+AGG | - | chr2_3:65988228-65988247 | None:intergenic | 55.0% | |
| CACCGTTCTTGCCCTTGTTG+AGG | + | chr2_3:65989653-65989672 | Msa0306840:intron | 55.0% | |
| TGGTGGGGTAAGATGGGGTC+AGG | + | chr2_3:65986658-65986677 | Msa0306840:five_prime_UTR | 60.0% | |
| TAGGAGGGGAAGGGATGGGA+GGG | - | chr2_3:65988218-65988237 | None:intergenic | 60.0% | |
| TTAGGAGGGGAAGGGATGGG+AGG | - | chr2_3:65988219-65988238 | None:intergenic | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+TGG | - | chr2_3:65988223-65988242 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 65986635 | 65989907 | 65986635 | ID=Msa0306840;Name=Msa0306840 |
| chr2_3 | mRNA | 65986635 | 65989907 | 65986635 | ID=Msa0306840-mRNA-1;Parent=Msa0306840;Name=Msa0306840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=53|0.5|0.66|0.66|0.5|0.33|3|0|85 |
| chr2_3 | exon | 65986635 | 65986697 | 65986635 | ID=Msa0306840-mRNA-1:exon:21983;Parent=Msa0306840-mRNA-1 |
| chr2_3 | exon | 65987453 | 65987654 | 65987453 | ID=Msa0306840-mRNA-1:exon:21984;Parent=Msa0306840-mRNA-1 |
| chr2_3 | exon | 65989862 | 65989907 | 65989862 | ID=Msa0306840-mRNA-1:exon:21985;Parent=Msa0306840-mRNA-1 |
| chr2_3 | five_prime_UTR | 65986635 | 65986687 | 65986635 | ID=Msa0306840-mRNA-1:five_prime_utr;Parent=Msa0306840-mRNA-1 |
| chr2_3 | CDS | 65986688 | 65986697 | 65986688 | ID=Msa0306840-mRNA-1:cds;Parent=Msa0306840-mRNA-1 |
| chr2_3 | CDS | 65987453 | 65987654 | 65987453 | ID=Msa0306840-mRNA-1:cds;Parent=Msa0306840-mRNA-1 |
| chr2_3 | CDS | 65989862 | 65989907 | 65989862 | ID=Msa0306840-mRNA-1:cds;Parent=Msa0306840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
