AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0314610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0314610 MtrunA17_Chr2g0284991 93.947 380 23 0 1 380 1 380 0.0 738
Msa0314610 MtrunA17_Chr2g0284951 79.474 380 69 3 1 380 1 371 0.0 605
Msa0314610 MtrunA17_Chr2g0285001 77.165 381 82 2 1 380 1 377 0.0 594
Msa0314610 MtrunA17_Chr2g0284941 76.053 380 66 3 1 380 1 355 0.0 579
Msa0314610 MtrunA17_Chr2g0284921 62.155 362 132 5 1 359 1 360 3.61e-148 423
Msa0314610 MtrunA17_Chr3g0085881 58.217 359 143 5 1 359 1 352 1.06e-141 406
Msa0314610 MtrunA17_Chr8g0380031 58.333 360 139 7 1 359 56 405 2.79e-136 395
Msa0314610 MtrunA17_Chr8g0380041 47.684 367 177 7 1 359 3 362 1.34e-109 325
Msa0314610 MtrunA17_Chr2g0285061 45.799 369 177 7 3 359 7 364 2.12e-106 317
Msa0314610 MtrunA17_Chr3g0086641 45.380 368 188 8 2 359 5 369 1.90e-103 310
Msa0314610 MtrunA17_Chr3g0077581 41.509 371 201 7 1 358 1 368 5.09e-90 275
Msa0314610 MtrunA17_Chr3g0077571 43.407 364 182 12 5 359 8 356 2.11e-86 266
Msa0314610 MtrunA17_Chr3g0131321 41.399 343 181 10 33 361 34 370 6.16e-78 245
Msa0314610 MtrunA17_Chr4g0017431 36.986 365 214 10 5 359 4 362 7.95e-68 218
Msa0314610 MtrunA17_Chr7g0275021 36.533 323 194 7 25 338 26 346 2.86e-60 199
Msa0314610 MtrunA17_Chr5g0434621 38.994 318 179 10 35 342 27 339 1.73e-59 196
Msa0314610 MtrunA17_Chr2g0284931 45.726 234 108 3 126 359 5 219 1.07e-58 190
Msa0314610 MtrunA17_Chr2g0294311 34.483 377 217 12 3 359 6 372 3.82e-57 191
Msa0314610 MtrunA17_Chr4g0068441 35.326 368 210 13 5 359 15 367 6.84e-57 190
Msa0314610 MtrunA17_Chr2g0294301 36.212 359 204 12 1 347 12 357 3.82e-56 188
Msa0314610 MtrunA17_Chr7g0275011 31.967 366 230 9 8 362 11 368 7.56e-56 187
Msa0314610 MtrunA17_Chr1g0189901 31.765 340 219 8 33 363 31 366 1.49e-53 181
Msa0314610 MtrunA17_Chr8g0374101 33.241 361 209 14 1 336 1 354 3.87e-53 180
Msa0314610 MtrunA17_Chr7g0274991 33.041 342 209 8 13 338 8 345 5.89e-53 179
Msa0314610 MtrunA17_Chr3g0085231 35.000 360 205 11 8 359 11 349 1.07e-52 178
Msa0314610 MtrunA17_Chr2g0320671 35.965 342 195 10 7 336 11 340 2.21e-52 177
Msa0314610 MtrunA17_Chr1g0189891 32.222 360 228 9 9 362 9 358 2.84e-50 172
Msa0314610 MtrunA17_Chr1g0189931 30.409 342 221 7 33 363 32 367 3.05e-50 172
Msa0314610 MtrunA17_Chr1g0182811 30.295 373 245 8 1 362 1 369 6.51e-50 172
Msa0314610 MtrunA17_Chr4g0060811 38.217 314 177 11 35 336 29 337 1.67e-49 171
Msa0314610 MtrunA17_Chr5g0396511 31.858 339 215 10 35 362 48 381 1.30e-48 169
Msa0314610 MtrunA17_Chr7g0275001 29.947 374 236 10 1 362 1 360 1.45e-48 168
Msa0314610 MtrunA17_Chr1g0156911 31.742 356 219 11 3 343 7 353 1.79e-48 167
Msa0314610 MtrunA17_Chr3g0092131 36.337 344 196 13 5 336 1 333 2.02e-48 167
Msa0314610 MtrunA17_Chr6g0457921 32.456 342 208 8 31 353 26 363 4.48e-48 167
Msa0314610 MtrunA17_Chr1g0156901 33.043 345 206 12 3 330 17 353 2.26e-47 165
Msa0314610 MtrunA17_Chr1g0156921 32.653 343 209 11 4 330 10 346 2.53e-47 164
Msa0314610 MtrunA17_Chr3g0105401 32.571 350 211 11 1 336 1 339 8.28e-47 163
Msa0314610 MtrunA17_Chr7g0215961 31.861 317 188 7 27 332 27 326 2.11e-46 162
Msa0314610 MtrunA17_Chr3g0099231 30.548 383 237 13 1 368 1 369 4.41e-46 162
Msa0314610 MtrunA17_Chr5g0405831 34.663 326 184 12 31 337 41 356 4.50e-46 161
Msa0314610 MtrunA17_Chr5g0438621 31.609 348 204 12 7 336 9 340 5.17e-46 161
Msa0314610 MtrunA17_Chr3g0120861 34.062 320 194 9 29 336 34 348 5.50e-46 161
Msa0314610 MtrunA17_Chr5g0444401 31.214 346 209 11 31 358 26 360 9.51e-46 160
Msa0314610 MtrunA17_Chr5g0405821 36.901 355 197 17 2 337 11 357 1.44e-45 160
Msa0314610 MtrunA17_Chr4g0008851 29.477 363 239 9 10 362 13 368 1.63e-45 160
Msa0314610 MtrunA17_Chr5g0438641 34.568 324 187 12 29 336 28 342 1.85e-45 159
Msa0314610 MtrunA17_Chr2g0285041 63.025 119 43 1 86 203 1 119 2.93e-45 152
Msa0314610 MtrunA17_Chr4g0027521 35.976 328 180 13 25 332 19 336 4.45e-45 158
Msa0314610 MtrunA17_Chr1g0156931 32.258 341 209 11 4 329 9 342 1.75e-44 157
Msa0314610 MtrunA17_Chr3g0099151 32.162 370 214 14 9 358 68 420 1.80e-43 156
Msa0314610 MtrunA17_Chr1g0156891 34.384 349 196 14 1 330 13 347 3.42e-43 154
Msa0314610 MtrunA17_Chr8g0341001 34.294 347 202 14 6 336 7 343 4.89e-42 150
Msa0314610 MtrunA17_Chr3g0142941 34.177 316 182 11 31 330 45 350 5.14e-41 148
Msa0314610 MtrunA17_Chr5g0420811 30.864 324 194 10 30 340 30 336 8.54e-41 147
Msa0314610 MtrunA17_Chr3g0099161 31.892 370 214 16 9 358 73 424 1.02e-40 149
Msa0314610 MtrunA17_Chr8g0371491 34.154 325 186 13 31 337 34 348 1.24e-40 147
Msa0314610 MtrunA17_Chr2g0330781 32.923 325 188 11 31 336 29 342 1.30e-40 147
Msa0314610 MtrunA17_Chr2g0301641 31.967 366 217 13 8 353 19 372 4.36e-40 146
Msa0314610 MtrunA17_Chr8g0370951 30.636 346 213 13 4 329 1 339 1.03e-39 144
Msa0314610 MtrunA17_Chr3g0142921 32.698 315 187 12 32 330 35 340 1.56e-39 144
Msa0314610 MtrunA17_Chr5g0432101 31.173 324 202 10 28 336 28 345 2.44e-39 144
Msa0314610 MtrunA17_Chr5g0438631 29.532 342 218 10 10 336 6 339 1.86e-38 141
Msa0314610 MtrunA17_Chr6g0455661 35.683 227 136 5 139 359 249 471 1.06e-37 141
Msa0314610 MtrunA17_Chr6g0455661 46.565 131 61 4 1 131 3 124 9.38e-26 108
Msa0314610 MtrunA17_Chr8g0344931 32.768 354 213 13 16 359 22 360 1.27e-37 139
Msa0314610 MtrunA17_Chr2g0284981 68.478 92 29 0 289 380 9 100 1.31e-37 131
Msa0314610 MtrunA17_Chr6g0459921 34.855 241 146 6 126 359 124 360 6.81e-37 137
Msa0314610 MtrunA17_Chr8g0371471 30.178 338 211 12 8 329 16 344 2.15e-36 135
Msa0314610 MtrunA17_Chr8g0344941 31.765 340 206 12 10 330 14 346 2.76e-36 135
Msa0314610 MtrunA17_Chr1g0157001 32.164 342 200 13 38 357 41 372 3.30e-35 132
Msa0314610 MtrunA17_Chr4g0046151 29.305 331 210 10 28 338 31 357 3.76e-35 132
Msa0314610 MtrunA17_Chr8g0371481 30.547 311 198 11 32 329 40 345 4.78e-35 132
Msa0314610 MtrunA17_Chr8g0349341 32.075 371 214 14 12 360 11 365 8.65e-35 131
Msa0314610 MtrunA17_Chr5g0437421 29.560 318 202 8 29 329 28 340 1.67e-33 127
Msa0314610 MtrunA17_Chr8g0349321 29.679 374 219 12 12 360 11 365 2.59e-32 124
Msa0314610 MtrunA17_Chr2g0283191 28.571 322 204 10 29 329 34 350 5.30e-32 124
Msa0314610 MtrunA17_Chr7g0229591 37.624 202 119 5 10 208 7 204 5.88e-32 120
Msa0314610 MtrunA17_Chr8g0349301 32.362 309 170 12 9 298 8 296 1.95e-30 118
Msa0314610 MtrunA17_Chr8g0370981 26.044 407 236 14 9 358 19 417 3.88e-25 105
Msa0314610 MtrunA17_Chr8g0349331 27.193 342 190 10 34 360 36 333 7.91e-25 103
Msa0314610 MtrunA17_Chr1g0160101 26.171 363 224 9 5 332 11 364 1.22e-24 103
Msa0314610 MtrunA17_Chr6g0469511 44.800 125 65 3 18 139 15 138 2.44e-24 97.4
Msa0314610 MtrunA17_Chr2g0285051 62.222 90 31 1 1 87 1 90 4.04e-24 95.9
Msa0314610 MtrunA17_Chr4g0027561 43.590 117 63 2 10 123 7 123 5.48e-24 96.7
Msa0314610 MtrunA17_Chr7g0226911 26.525 377 222 11 3 338 5 367 7.77e-23 99.0
Msa0314610 MtrunA17_Chr6g0450721 28.358 335 202 13 23 336 23 340 4.96e-22 96.3
Msa0314610 MtrunA17_Chr1g0160011 27.108 332 204 11 32 334 39 361 6.43e-22 96.3
Msa0314610 MtrunA17_Chr6g0450711 27.139 339 204 12 28 336 117 442 9.10e-22 96.7
Msa0314610 MtrunA17_Chr1g0178941 28.037 321 195 11 34 334 41 345 1.88e-21 94.4
Msa0314610 MtrunA17_Chr7g0254461 26.027 365 224 12 5 332 13 368 9.03e-21 92.8
Msa0314610 MtrunA17_Chr7g0275291 25.000 380 229 15 10 350 9 371 2.53e-20 91.7
Msa0314610 MtrunA17_Chr1g0178931 28.076 317 192 13 34 334 38 334 4.06e-20 90.5
Msa0314610 MtrunA17_Chr8g0381581 25.275 364 222 12 4 332 16 364 6.61e-20 90.5
Msa0314610 MtrunA17_Chr1g0198351 26.814 317 189 15 34 331 44 336 6.62e-20 90.1
Msa0314610 MtrunA17_Chr1g0160031 25.967 362 218 11 9 335 15 361 8.63e-20 90.1
Msa0314610 MtrunA17_Chr1g0159981 25.620 363 228 10 5 335 18 370 1.55e-19 89.4
Msa0314610 MtrunA17_Chr6g0450701 28.319 339 200 15 28 336 34 359 2.52e-19 88.6
Msa0314610 MtrunA17_Chr7g0226931 25.316 395 227 13 1 341 4 384 2.82e-19 88.6
Msa0314610 MtrunA17_Chr4g0027571 31.776 214 125 7 134 334 3 208 6.09e-19 85.1
Msa0314610 MtrunA17_Chr6g0450731 26.543 324 206 12 32 336 32 342 9.60e-19 86.7
Msa0314610 MtrunA17_Chr1g0159971 25.967 362 213 13 7 330 22 366 1.76e-18 86.3
Msa0314610 MtrunA17_Chr2g0283511 27.824 363 211 16 2 330 4 349 2.04e-18 85.9
Msa0314610 MtrunA17_Chr1g0159991 25.065 383 241 12 1 351 4 372 2.14e-18 85.9
Msa0314610 MtrunA17_Chr2g0285031 51.389 72 35 0 288 359 6 77 3.19e-18 78.6
Msa0314610 MtrunA17_Chr8g0370971 40.769 130 69 4 10 131 14 143 4.55e-18 80.9
Msa0314610 MtrunA17_Chr3g0104821 26.586 331 197 14 33 330 44 361 7.81e-18 84.3
Msa0314610 MtrunA17_Chr2g0283501 26.027 365 210 13 3 330 7 348 2.90e-17 82.4
Msa0314610 MtrunA17_Chr1g0189921 44.086 93 50 2 33 123 31 123 4.67e-17 77.8
Msa0314610 MtrunA17_Chr0c01g0489581 27.429 350 201 18 11 330 6 332 5.23e-17 81.6
Msa0314610 MtrunA17_Chr1g0198381 23.824 319 203 13 34 334 3 299 6.24e-17 80.9
Msa0314610 MtrunA17_Chr2g0321991 43.956 91 46 3 30 116 30 119 1.42e-16 75.5
Msa0314610 MtrunA17_Chr7g0266061 25.074 339 217 14 13 334 22 340 1.58e-16 80.1
Msa0314610 MtrunA17_Chr0c01g0489571 27.143 350 202 18 11 330 6 332 2.06e-16 79.7
Msa0314610 MtrunA17_Chr2g0308201 50.633 79 34 1 8 86 15 88 2.32e-16 73.9
Msa0314610 MtrunA17_Chr2g0317271 26.934 349 202 18 12 330 7 332 6.43e-16 78.2
Msa0314610 MtrunA17_Chr2g0317261 26.705 352 205 18 9 330 4 332 7.39e-16 78.2
Msa0314610 MtrunA17_Chr2g0283481 25.424 354 220 14 7 330 24 363 9.47e-16 78.2
Msa0314610 MtrunA17_Chr4g0057991 24.620 329 198 12 34 330 40 350 1.94e-15 77.0
Msa0314610 MtrunA17_Chr8g0370961 26.293 232 148 8 128 347 14 234 2.13e-15 75.1
Msa0314610 MtrunA17_Chr5g0440501 26.180 233 156 6 144 362 23 253 2.97e-15 75.1
Msa0314610 MtrunA17_Chr8g0347751 22.701 348 213 13 34 341 37 368 3.87e-15 76.3
Msa0314610 MtrunA17_Chr7g0226941 24.638 345 213 12 32 341 32 364 5.74e-15 75.9
Msa0314610 MtrunA17_Chr1g0198391 25.000 348 182 13 34 334 34 349 6.82e-14 72.4
Msa0314610 MtrunA17_Chr7g0273101 24.340 341 209 11 32 336 28 355 1.21e-13 71.6
Msa0314610 MtrunA17_Chr4g0018561 43.836 73 40 1 10 81 7 79 8.06e-13 64.3
Msa0314610 MtrunA17_Chr3g0112821 25.538 325 198 13 34 330 31 339 1.05e-12 68.9
Msa0314610 MtrunA17_Chr3g0104801 40.449 89 49 3 33 118 44 131 6.91e-12 63.9
Msa0314610 MtrunA17_Chr3g0093031 25.382 327 201 14 34 330 31 344 3.25e-11 64.3
Msa0314610 MtrunA17_Chr2g0283531 24.932 369 212 18 5 330 1 347 6.60e-11 63.2
Msa0314610 MtrunA17_Chr3g0096551 25.670 261 145 11 33 266 29 267 9.32e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0314610 AT1G29670.1 47.541 366 181 6 1 359 1 362 1.24e-113 336
Msa0314610 AT1G29670.2 47.541 366 181 6 1 359 69 430 2.28e-112 335
Msa0314610 AT1G29660.1 46.883 369 180 8 1 359 1 363 2.65e-109 325
Msa0314610 AT5G45670.1 44.959 367 183 7 4 358 1 360 3.97e-105 314
Msa0314610 AT4G18970.1 48.094 341 167 5 27 359 22 360 3.10e-104 311
Msa0314610 AT4G18970.2 48.094 341 167 5 27 359 22 360 5.36e-103 310
Msa0314610 AT1G33811.1 42.733 344 180 6 28 358 29 368 1.24e-94 288
Msa0314610 AT2G19010.1 44.231 364 182 8 1 360 2 348 2.43e-94 286
Msa0314610 AT2G19010.2 44.231 364 182 8 1 360 32 378 1.18e-93 285
Msa0314610 AT2G19050.1 45.223 314 161 5 30 340 28 333 6.02e-83 257
Msa0314610 AT1G71691.2 40.413 339 189 7 27 358 49 381 8.30e-82 255
Msa0314610 AT4G30140.1 43.030 330 175 5 30 358 30 347 5.44e-78 244
Msa0314610 AT5G08460.1 39.410 373 205 11 1 357 15 382 4.38e-77 243
Msa0314610 AT2G19060.1 40.055 362 191 8 6 358 4 348 1.00e-74 236
Msa0314610 AT2G19050.2 48.387 248 120 2 30 277 28 267 2.84e-73 230
Msa0314610 AT5G15720.1 39.888 356 182 12 26 359 18 363 2.99e-72 230
Msa0314610 AT1G71250.1 37.940 369 211 11 1 357 8 370 1.23e-70 226
Msa0314610 AT1G71691.3 43.028 251 139 4 27 277 49 295 3.46e-65 210
Msa0314610 AT3G50400.1 33.600 375 218 13 8 359 7 373 1.44e-55 187
Msa0314610 AT1G71691.1 34.965 286 173 7 80 358 1 280 1.75e-55 184
Msa0314610 AT5G15720.2 42.966 263 135 8 26 277 18 276 1.92e-55 185
Msa0314610 AT4G28780.1 33.431 341 208 11 1 329 1 334 6.63e-54 182
Msa0314610 AT2G23540.1 37.003 327 170 13 35 336 50 365 3.46e-52 178
Msa0314610 AT1G74460.1 37.798 336 178 14 20 336 10 333 5.12e-52 177
Msa0314610 AT5G37690.1 36.538 312 183 11 35 336 29 335 6.50e-52 177
Msa0314610 AT3G04290.1 31.653 357 214 8 33 380 29 364 4.76e-51 175
Msa0314610 AT2G04570.1 35.860 343 199 12 13 342 10 344 3.15e-50 172
Msa0314610 AT5G33370.1 31.519 349 218 9 28 363 25 365 1.87e-49 171
Msa0314610 AT5G41890.1 35.866 329 176 11 35 336 33 353 2.96e-48 168
Msa0314610 AT5G03820.1 33.526 346 212 11 5 336 4 345 3.72e-48 167
Msa0314610 AT4G16230.1 40.408 245 132 8 13 249 10 248 5.52e-48 163
Msa0314610 AT5G03820.2 33.526 346 212 11 5 336 32 373 8.00e-48 167
Msa0314610 AT5G22810.1 35.530 349 197 12 8 336 7 347 1.05e-47 166
Msa0314610 AT5G15720.3 36.140 285 157 9 92 359 56 332 1.73e-47 164
Msa0314610 AT5G37690.2 34.615 312 181 12 35 336 29 327 1.33e-46 162
Msa0314610 AT2G42990.1 33.837 331 200 11 29 346 24 348 1.83e-46 162
Msa0314610 AT1G59406.1 33.529 340 205 10 1 329 1 330 6.44e-46 161
Msa0314610 AT1G59030.1 33.529 340 205 10 1 329 1 330 6.44e-46 161
Msa0314610 AT1G58725.1 33.529 340 205 10 1 329 1 330 6.44e-46 161
Msa0314610 AT5G18430.1 32.362 343 209 11 3 332 4 336 9.58e-46 160
Msa0314610 AT4G10950.2 30.588 340 220 10 31 359 69 403 1.96e-45 161
Msa0314610 AT3G53100.1 34.568 324 197 8 24 336 20 339 1.97e-45 160
Msa0314610 AT1G75880.1 31.806 371 214 14 3 348 19 375 6.65e-45 159
Msa0314610 AT1G75880.2 32.609 368 214 14 3 348 19 374 7.30e-45 159
Msa0314610 AT5G63170.1 31.157 337 206 10 1 329 1 319 2.10e-43 154
Msa0314610 AT4G10950.1 30.588 340 216 11 31 359 69 399 3.15e-43 155
Msa0314610 AT4G26790.1 34.688 320 192 10 29 336 25 339 3.21e-43 154
Msa0314610 AT4G26790.2 34.688 320 192 10 29 336 25 339 3.21e-43 154
Msa0314610 AT3G14820.1 33.523 352 208 13 8 345 11 350 3.31e-43 154
Msa0314610 AT5G03810.1 33.232 328 191 11 27 336 24 341 5.16e-43 153
Msa0314610 AT1G75890.2 32.861 353 213 14 8 343 20 365 1.11e-42 153
Msa0314610 AT1G75890.3 32.861 353 213 14 8 343 49 394 1.56e-42 153
Msa0314610 AT5G42170.1 33.974 312 184 10 31 329 48 350 6.09e-42 151
Msa0314610 AT2G03980.2 30.149 335 209 7 22 341 32 356 1.07e-41 150
Msa0314610 AT2G03980.3 30.149 335 209 7 22 341 32 356 1.07e-41 150
Msa0314610 AT2G03980.1 30.149 335 209 7 22 341 32 356 1.07e-41 150
Msa0314610 AT2G03980.4 30.149 335 209 7 22 341 32 356 1.07e-41 150
Msa0314610 AT1G58520.3 32.710 321 193 10 18 329 17 323 1.23e-40 147
Msa0314610 AT1G58525.1 32.710 321 193 10 18 329 17 323 1.23e-40 147
Msa0314610 AT1G75890.1 31.593 364 216 13 8 343 20 378 1.53e-40 147
Msa0314610 AT5G55050.1 31.595 326 200 9 23 330 28 348 5.65e-40 146
Msa0314610 AT3G16370.1 33.438 320 193 12 31 336 28 341 1.69e-39 144
Msa0314610 AT1G20135.1 31.737 334 200 12 5 329 6 320 2.77e-39 143
Msa0314610 AT3G43570.1 31.611 329 184 12 8 329 7 301 3.26e-39 142
Msa0314610 AT5G33370.2 32.734 278 172 6 28 295 25 297 1.41e-38 141
Msa0314610 AT3G43550.1 33.818 275 166 8 8 277 7 270 2.57e-38 139
Msa0314610 AT1G53920.1 31.065 338 202 12 26 348 41 362 1.19e-37 140
Msa0314610 AT2G31540.1 30.685 365 217 15 4 347 1 350 1.63e-37 139
Msa0314610 AT1G73610.1 31.731 312 189 9 27 329 29 325 8.36e-37 137
Msa0314610 AT1G23500.1 31.858 339 203 12 3 329 4 326 1.32e-36 136
Msa0314610 AT1G58430.1 30.769 351 209 17 4 330 1 341 1.34e-36 136
Msa0314610 AT2G30220.1 31.646 316 191 13 32 330 32 339 1.48e-36 136
Msa0314610 AT1G71120.1 29.747 316 194 11 29 329 27 329 5.75e-36 135
Msa0314610 AT5G45950.1 28.440 327 214 11 13 329 21 337 5.06e-35 132
Msa0314610 AT1G20132.1 33.025 324 189 14 32 337 60 373 5.90e-35 132
Msa0314610 AT2G40250.1 28.528 326 204 10 31 336 34 350 9.30e-35 131
Msa0314610 AT2G24560.1 31.124 347 212 15 4 330 1 340 1.14e-34 131
Msa0314610 AT2G30310.1 30.094 319 192 13 32 330 33 340 1.48e-34 131
Msa0314610 AT1G20130.2 30.357 336 202 10 31 347 182 504 3.12e-34 132
Msa0314610 AT1G20130.1 30.357 336 202 10 31 347 202 524 4.98e-34 132
Msa0314610 AT1G75900.1 30.631 333 205 11 13 329 23 345 1.07e-33 129
Msa0314610 AT1G06990.1 29.483 329 200 11 29 337 33 349 1.67e-32 125
Msa0314610 AT5G45960.1 28.875 329 211 10 28 338 42 365 2.07e-32 125
Msa0314610 AT3G14225.2 30.659 349 217 11 28 359 32 372 3.73e-31 122
Msa0314610 AT5G40990.1 30.029 343 217 10 33 359 37 372 7.17e-31 121
Msa0314610 AT1G75930.1 30.473 338 209 13 4 329 1 324 8.56e-31 120
Msa0314610 AT1G20120.1 30.351 313 195 12 32 329 77 381 1.04e-30 121
Msa0314610 AT3G14225.1 30.199 351 220 11 28 359 32 376 1.16e-30 120
Msa0314610 AT2G24560.2 32.056 287 175 12 4 277 1 280 2.42e-30 119
Msa0314610 AT1G75920.2 30.383 339 208 13 4 329 1 324 1.77e-28 114
Msa0314610 AT1G53940.2 30.286 350 207 15 33 359 39 374 7.38e-28 113
Msa0314610 AT1G53990.1 28.232 379 233 14 4 359 1 363 2.04e-27 111
Msa0314610 AT1G75910.1 30.723 332 204 12 10 329 7 324 4.02e-27 110
Msa0314610 AT2G04020.1 31.064 235 148 5 11 240 21 246 1.42e-26 107
Msa0314610 AT5G03610.1 28.455 369 210 17 1 337 1 347 5.50e-26 107
Msa0314610 AT2G04020.2 27.083 336 198 10 11 341 21 314 1.98e-25 105
Msa0314610 AT1G75920.1 29.755 326 187 13 32 329 23 334 2.64e-24 102
Msa0314610 AT1G54020.2 27.635 351 210 15 34 366 34 358 3.26e-24 102
Msa0314610 AT1G53940.1 32.258 248 145 11 33 269 39 274 1.19e-23 100
Msa0314610 AT1G54010.1 27.467 375 232 16 11 365 11 365 1.78e-23 100
Msa0314610 AT3G14210.1 26.882 372 214 14 33 375 36 378 1.23e-22 98.6
Msa0314610 AT1G28610.2 27.123 365 210 17 1 330 4 347 1.38e-21 95.5
Msa0314610 AT1G31550.1 28.324 346 184 17 23 330 30 349 1.41e-21 95.5
Msa0314610 AT1G54000.1 25.781 384 241 17 3 366 7 366 1.60e-21 95.5
Msa0314610 AT5G14450.1 25.197 381 225 12 1 341 12 372 1.76e-21 95.5
Msa0314610 AT4G16220.1 46.610 118 57 4 1 116 1 114 2.85e-21 92.4
Msa0314610 AT1G28570.1 27.248 367 199 15 7 330 10 351 7.55e-21 93.6
Msa0314610 AT1G31550.2 28.571 350 181 19 23 330 30 352 1.01e-20 93.2
Msa0314610 AT1G28580.1 27.660 376 188 17 9 330 9 354 5.18e-20 91.3
Msa0314610 AT2G27360.1 27.855 359 207 15 4 330 13 351 1.12e-19 90.1
Msa0314610 AT3G09930.2 26.347 334 187 19 34 337 40 344 1.89e-19 89.0
Msa0314610 AT3G09930.1 26.347 334 187 19 34 337 40 344 1.89e-19 89.0
Msa0314610 AT3G05180.1 25.731 342 205 11 32 337 35 363 2.04e-19 89.4
Msa0314610 AT1G75920.4 29.021 286 176 12 57 329 25 296 4.34e-19 87.4
Msa0314610 AT1G54790.3 24.796 367 228 11 1 332 1 354 5.09e-19 88.2
Msa0314610 AT1G28660.2 26.431 367 213 18 1 330 5 351 1.93e-18 86.3
Msa0314610 AT3G26430.1 26.331 338 200 12 32 332 30 355 3.45e-18 85.5
Msa0314610 AT1G75920.3 27.596 337 189 13 4 329 1 293 7.50e-18 84.0
Msa0314610 AT4G01130.1 24.722 360 219 14 9 332 14 357 8.72e-18 84.3
Msa0314610 AT3G62280.1 26.524 328 194 14 32 332 35 342 3.05e-17 82.8
Msa0314610 AT3G27950.1 24.185 368 231 11 3 338 2 353 3.68e-17 82.4
Msa0314610 AT5G03600.2 24.847 326 201 16 30 337 46 345 7.81e-16 78.6
Msa0314610 AT5G03600.1 24.847 326 201 16 30 337 11 310 8.26e-16 78.2
Msa0314610 AT1G67830.1 25.575 348 209 12 20 332 22 354 7.12e-15 75.9
Msa0314610 AT1G54790.1 24.513 359 218 12 11 332 11 353 1.15e-14 75.1
Msa0314610 AT3G62280.2 27.308 260 156 11 32 277 35 275 2.00e-14 73.6
Msa0314610 AT1G54020.1 25.000 296 182 12 87 366 1 272 2.00e-14 73.6
Msa0314610 AT1G54020.5 25.000 296 182 12 87 366 1 272 2.00e-14 73.6
Msa0314610 AT1G54020.3 25.000 296 182 12 87 366 1 272 2.00e-14 73.6
Msa0314610 AT1G28600.2 31.285 179 97 9 12 173 7 176 5.21e-14 71.2
Msa0314610 AT1G56670.1 23.889 360 229 12 7 338 12 354 8.06e-14 72.8
Msa0314610 AT3G14210.2 26.778 239 145 8 158 375 21 250 1.75e-13 70.5
Msa0314610 AT5G45910.1 28.487 337 186 16 34 330 31 352 2.10e-13 71.2
Msa0314610 AT4G01130.2 26.891 238 149 9 9 235 14 237 2.60e-13 70.9
Msa0314610 AT3G48460.1 22.985 335 210 13 34 336 39 357 4.36e-13 70.5
Msa0314610 AT4G16233.1 34.400 125 71 6 241 357 6 127 4.79e-13 66.2
Msa0314610 AT1G54030.2 24.138 232 150 7 33 260 52 261 8.60e-13 68.9
Msa0314610 AT1G54020.4 26.106 226 141 9 157 366 8 223 1.83e-11 63.9
Msa0314610 AT1G54790.2 22.857 385 218 12 11 332 11 379 2.49e-11 65.1

Find 86 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCATTTGCAAACATTAA+TGG 0.140996 2_4:-10440510 Msa0314610:CDS
TTTGATGTGATTACATTTAT+AGG 0.141537 2_4:+10439455 None:intergenic
AATAATTACCATTTGAATTC+TGG 0.175547 2_4:+10439779 None:intergenic
TTGATTGCAGCTCAGCTTCT+TGG 0.213467 2_4:-10440549 Msa0314610:intron
CTTAGTGCCTCTAGTTAAAT+AGG 0.214657 2_4:-10439431 Msa0314610:exon
TGTGGCTTGTTGGATATAAT+TGG 0.215096 2_4:+10440173 None:intergenic
TAACAGGCTTTACATGAAAT+TGG 0.232077 2_4:-10440015 Msa0314610:intron
ACTGTTTATAAATATGAATT+TGG 0.232432 2_4:+10439819 None:intergenic
AGAGTTATCTTTGAATTTAC+AGG 0.246825 2_4:-10440113 Msa0314610:intron
ATGAAAGGCCATGCCATAAT+AGG 0.255257 2_4:-10439631 Msa0314610:CDS
GTTACCTGGGTTAGGCCTAT+TGG 0.264459 2_4:-10439977 Msa0314610:CDS
ACACATACTCTCCCCTATTA+TGG 0.313229 2_4:+10439618 None:intergenic
TTACCTGGGTTAGGCCTATT+GGG 0.313526 2_4:-10439976 Msa0314610:CDS
AAATGTAATTACAATCCTTA+TGG 0.317299 2_4:-10440743 Msa0314610:CDS
AATAATGAAATAAGTTTAAT+CGG 0.339188 2_4:-10439256 Msa0314610:three_prime_UTR
GAAAAGATTGTTTCAAATGT+AGG 0.356575 2_4:+10439305 None:intergenic
AACTATGCATCTGGCGCAGC+TGG 0.367607 2_4:-10440465 Msa0314610:CDS
ATAGGGGAGAGTATGTGTTT+TGG 0.376746 2_4:-10439613 Msa0314610:CDS
GGGCTATAAATGTGGCTTGT+TGG 0.378126 2_4:+10440163 None:intergenic
ACAAGAAACTATGAAGGAAT+TGG 0.384112 2_4:-10439480 Msa0314610:CDS
TGAAAGGCCATGCCATAATA+GGG 0.385623 2_4:-10439630 Msa0314610:CDS
TGTTGCAAAACAAGATTGAT+TGG 0.387307 2_4:-10439668 Msa0314610:CDS
TCGACCGTTGGTAAATCTTC+CGG 0.392186 2_4:+10440697 None:intergenic
GACTTTCCGATGGGACCAAC+CGG 0.394422 2_4:-10440716 Msa0314610:CDS
CAATTTATATGAAAGCTATC+TGG 0.395034 2_4:+10439377 None:intergenic
TTATGGCATGGCCTTTCATC+AGG 0.402123 2_4:+10439635 None:intergenic
GGAGACTCTTTATCTGATAG+TGG 0.414420 2_4:-10440794 Msa0314610:CDS
TGAATTCTGGTAATCAGATT+CGG 0.419464 2_4:+10439792 None:intergenic
GTGGCTTGTTGGATATAATT+GGG 0.419954 2_4:+10440174 None:intergenic
TGCTTGTATTATGTGCATAT+TGG 0.423781 2_4:-10440229 Msa0314610:CDS
ACAAGGTTCTTAATATCCAT+TGG 0.441001 2_4:+10439506 None:intergenic
CACTTGGAGTGCAGCCCAAT+AGG 0.447176 2_4:+10439962 None:intergenic
TCTCAAATTGTTAGCAGACT+TGG 0.452754 2_4:-10440286 Msa0314610:CDS
GGAACCTAGTCACTGCAATA+AGG 0.456230 2_4:-10439565 Msa0314610:CDS
GTCAATTGAAGTTCGACCGT+TGG 0.472588 2_4:+10440685 None:intergenic
TCTGATTACCAGAATTCAAA+TGG 0.483791 2_4:-10439787 Msa0314610:intron
CATAATACAAGCATTTGTTA+AGG 0.485419 2_4:+10440239 None:intergenic
GAGCCATTAATGTTTGCAAA+TGG 0.485984 2_4:+10440507 None:intergenic
ATCTTTACTCATGTAACAGA+TGG 0.487371 2_4:-10439937 Msa0314610:CDS
AAATATGTGTTACCTGGGTT+AGG 0.497677 2_4:-10439985 Msa0314610:CDS
AAAGGCGTGAACTATGCATC+TGG 0.501902 2_4:-10440474 Msa0314610:CDS
ATCGGAAAGTCGATTCCATA+AGG 0.505437 2_4:+10440728 None:intergenic
TATTGAGACAAGCATGGCTA+AGG 0.505818 2_4:-10440436 Msa0314610:intron
GGTTCCAAGCCTCAGTGGTA+TGG 0.506388 2_4:+10439582 None:intergenic
TTTAGTCTTCACTTATCCAA+TGG 0.506831 2_4:-10439522 Msa0314610:CDS
TATCTGCAACAATGTGTCAA+TGG 0.507430 2_4:-10440848 Msa0314610:CDS
ATCTGTTACATGAGTAAAGA+TGG 0.513617 2_4:+10439939 None:intergenic
AAATCAGATCAAACATAAGA+TGG 0.520880 2_4:+10439228 None:intergenic
GTGTATCTGAAATGTTGATA+AGG 0.526175 2_4:-10439170 Msa0314610:three_prime_UTR
TTCCAAGCTTAAATCTCTAG+TGG 0.527818 2_4:-10439872 Msa0314610:CDS
GCAAGAAAATATGTGTTACC+TGG 0.530877 2_4:-10439991 Msa0314610:CDS
CCATTAATGTTTGCAAATGG+TGG 0.532987 2_4:+10440510 None:intergenic
AATCTTCCGGTTGGTCCCAT+CGG 0.551140 2_4:+10440710 None:intergenic
AATTCCATACCACTGAGGCT+TGG 0.552193 2_4:-10439586 Msa0314610:CDS
TATTGTAACAGCATATGAGT+AGG 0.556373 2_4:+10439352 None:intergenic
ATTGTAACAGCATATGAGTA+GGG 0.559495 2_4:+10439353 None:intergenic
ATCCACTAGAGATTTAAGCT+TGG 0.559515 2_4:+10439870 None:intergenic
AGAGTTTCTGCATACTGCTG+AGG 0.561066 2_4:+10440142 None:intergenic
AGATTGTTTCAAATGTAGGT+AGG 0.562268 2_4:+10439309 None:intergenic
TATGGAATCGACTTTCCGAT+GGG 0.572364 2_4:-10440725 Msa0314610:CDS
TACTCTCCCCTATTATGGCA+TGG 0.572966 2_4:+10439623 None:intergenic
AAGACCTTATTGCAGTGACT+AGG 0.573479 2_4:+10439561 None:intergenic
ATCTATGATCAAGACATGGT+TGG 0.575942 2_4:-10440900 Msa0314610:CDS
CAAGAAAATATGTGTTACCT+GGG 0.577135 2_4:-10439990 Msa0314610:CDS
GAGTTTCTGCATACTGCTGA+GGG 0.577747 2_4:+10440143 None:intergenic
TTATGGAATCGACTTTCCGA+TGG 0.587602 2_4:-10440726 Msa0314610:CDS
TGTTGAACAAGAAACTATGA+AGG 0.589319 2_4:-10439486 Msa0314610:CDS
GAGGGTGTATTCCTGATGAA+AGG 0.592786 2_4:-10439646 Msa0314610:CDS
TCTTTACTCATGTAACAGAT+GGG 0.613164 2_4:-10439936 Msa0314610:CDS
TGGCTTGTTGGATATAATTG+GGG 0.614511 2_4:+10440175 None:intergenic
GCAAAACAAGATTGATTGGA+GGG 0.615989 2_4:-10439664 Msa0314610:CDS
ACATGAGTAAAGATGGCACT+TGG 0.617060 2_4:+10439946 None:intergenic
TCATAGTTTCTTGTTCAACA+AGG 0.617726 2_4:+10439489 None:intergenic
ACTTGAACCTATTTAACTAG+AGG 0.628948 2_4:+10439424 None:intergenic
TGCAAAACAAGATTGATTGG+AGG 0.634424 2_4:-10439665 Msa0314610:CDS
AATGGCTCTGACATACTCAA+AGG 0.634741 2_4:-10440492 Msa0314610:CDS
AACAGATGGGTCTTGTGTTG+AGG 0.636336 2_4:-10439923 Msa0314610:CDS
GAAAGGCCATGCCATAATAG+GGG 0.638032 2_4:-10439629 Msa0314610:CDS
CCGTTGGTAAATCTTCCGGT+TGG 0.639272 2_4:+10440701 None:intergenic
ACTGCTGAGGGCTATAAATG+TGG 0.652295 2_4:+10440155 None:intergenic
AATTCGTATTGAGACAAGCA+TGG 0.663192 2_4:-10440442 Msa0314610:CDS
GACTAGGTTCCAAGCCTCAG+TGG 0.693512 2_4:+10439577 None:intergenic
TGGAATCTATGATCAAGACA+TGG 0.694114 2_4:-10440904 Msa0314610:CDS
CAGCCCAATAGGCCTAACCC+AGG 0.713718 2_4:+10439973 None:intergenic
GGATGAATTCCATACCACTG+AGG 0.721325 2_4:-10439591 Msa0314610:CDS
CCAACCGGAAGATTTACCAA+CGG 0.775116 2_4:-10440701 Msa0314610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATGAAATAAGTTTAAT+CGG - chr2_4:10440810-10440829 Msa0314610:CDS 10.0%
!! AATAATGAAATAAGTTTAAT+CGG - chr2_4:10440810-10440829 Msa0314610:CDS 10.0%
!! ACTGTTTATAAATATGAATT+TGG + chr2_4:10440250-10440269 None:intergenic 15.0%
!! ACTGTTTATAAATATGAATT+TGG + chr2_4:10440250-10440269 None:intergenic 15.0%
!! AAATGTAATTACAATCCTTA+TGG - chr2_4:10439323-10439342 Msa0314610:three_prime_UTR 20.0%
!! CATAATATGGATAAGTTAAA+AGG + chr2_4:10439421-10439440 None:intergenic 20.0%
!! AAATAATTTCGTATTGTTAC+AGG - chr2_4:10439707-10439726 Msa0314610:intron 20.0%
!! AATAATTTCGTATTGTTACA+GGG - chr2_4:10439708-10439727 Msa0314610:intron 20.0%
!! AATAATTACCATTTGAATTC+TGG + chr2_4:10440290-10440309 None:intergenic 20.0%
!! TTTGATGTGATTACATTTAT+AGG + chr2_4:10440614-10440633 None:intergenic 20.0%
!! AAATGTAATTACAATCCTTA+TGG - chr2_4:10439323-10439342 Msa0314610:three_prime_UTR 20.0%
!! CATAATATGGATAAGTTAAA+AGG + chr2_4:10439421-10439440 None:intergenic 20.0%
!! AAATAATTTCGTATTGTTAC+AGG - chr2_4:10439707-10439726 Msa0314610:intron 20.0%
!! AATAATTTCGTATTGTTACA+GGG - chr2_4:10439708-10439727 Msa0314610:intron 20.0%
!! AATAATTACCATTTGAATTC+TGG + chr2_4:10440290-10440309 None:intergenic 20.0%
!! TTTGATGTGATTACATTTAT+AGG + chr2_4:10440614-10440633 None:intergenic 20.0%
!! ATTGTAATTACATTTTGCAG+AGG + chr2_4:10439318-10439337 None:intergenic 25.0%
! TGAGATGAATCAAAAGTTTA+AGG + chr2_4:10439482-10439501 None:intergenic 25.0%
! GAACAATCAAAGAAATGAAA+AGG + chr2_4:10439681-10439700 None:intergenic 25.0%
!! CATAATACAAGCATTTGTTA+AGG + chr2_4:10439830-10439849 None:intergenic 25.0%
! AGAGTTATCTTTGAATTTAC+AGG - chr2_4:10439953-10439972 Msa0314610:CDS 25.0%
! TTTGCTTTCACATTTATTGA+TGG - chr2_4:10440002-10440021 Msa0314610:CDS 25.0%
!!! TGGTTTATAATAGAAGCATT+TGG - chr2_4:10440022-10440041 Msa0314610:intron 25.0%
! TGGAATTAAAAATGAATGCA+AGG + chr2_4:10440179-10440198 None:intergenic 25.0%
!!! ATTTTACTGTGTTTGATTTC+AGG - chr2_4:10440353-10440372 Msa0314610:intron 25.0%
! CAATTTATATGAAAGCTATC+TGG + chr2_4:10440692-10440711 None:intergenic 25.0%
! GAAAAGATTGTTTCAAATGT+AGG + chr2_4:10440764-10440783 None:intergenic 25.0%
! AAATCAGATCAAACATAAGA+TGG + chr2_4:10440841-10440860 None:intergenic 25.0%
!! ATGTTTGATCTGATTTTTGA+TGG - chr2_4:10440845-10440864 Msa0314610:CDS 25.0%
!! ATTGTAATTACATTTTGCAG+AGG + chr2_4:10439318-10439337 None:intergenic 25.0%
! TGAGATGAATCAAAAGTTTA+AGG + chr2_4:10439482-10439501 None:intergenic 25.0%
! GAACAATCAAAGAAATGAAA+AGG + chr2_4:10439681-10439700 None:intergenic 25.0%
!! CATAATACAAGCATTTGTTA+AGG + chr2_4:10439830-10439849 None:intergenic 25.0%
! AGAGTTATCTTTGAATTTAC+AGG - chr2_4:10439953-10439972 Msa0314610:CDS 25.0%
! TTTGCTTTCACATTTATTGA+TGG - chr2_4:10440002-10440021 Msa0314610:CDS 25.0%
!!! TGGTTTATAATAGAAGCATT+TGG - chr2_4:10440022-10440041 Msa0314610:intron 25.0%
! TGGAATTAAAAATGAATGCA+AGG + chr2_4:10440179-10440198 None:intergenic 25.0%
!!! ATTTTACTGTGTTTGATTTC+AGG - chr2_4:10440353-10440372 Msa0314610:intron 25.0%
! CAATTTATATGAAAGCTATC+TGG + chr2_4:10440692-10440711 None:intergenic 25.0%
! GAAAAGATTGTTTCAAATGT+AGG + chr2_4:10440764-10440783 None:intergenic 25.0%
! AAATCAGATCAAACATAAGA+TGG + chr2_4:10440841-10440860 None:intergenic 25.0%
!! ATGTTTGATCTGATTTTTGA+TGG - chr2_4:10440845-10440864 Msa0314610:CDS 25.0%
TCTCCAAAGATAAAAAGACA+AGG + chr2_4:10439257-10439276 None:intergenic 30.0%
! TAATTACATTTTGCAGAGGT+AGG + chr2_4:10439314-10439333 None:intergenic 30.0%
ACACTTCATGGTTCATAATA+TGG + chr2_4:10439434-10439453 None:intergenic 30.0%
GAACAAAGAAAAACACTTCA+TGG + chr2_4:10439446-10439465 None:intergenic 30.0%
TGCTTGTATTATGTGCATAT+TGG - chr2_4:10439837-10439856 Msa0314610:CDS 30.0%
AAGCATTTGGTATATGTAAC+AGG - chr2_4:10440035-10440054 Msa0314610:intron 30.0%
TAACAGGCTTTACATGAAAT+TGG - chr2_4:10440051-10440070 Msa0314610:intron 30.0%
CAAGAAAATATGTGTTACCT+GGG - chr2_4:10440076-10440095 Msa0314610:intron 30.0%
ATCTGTTACATGAGTAAAGA+TGG + chr2_4:10440130-10440149 None:intergenic 30.0%
ATCTTTACTCATGTAACAGA+TGG - chr2_4:10440129-10440148 Msa0314610:CDS 30.0%
TCTTTACTCATGTAACAGAT+GGG - chr2_4:10440130-10440149 Msa0314610:CDS 30.0%
TGAATTCTGGTAATCAGATT+CGG + chr2_4:10440277-10440296 None:intergenic 30.0%
TCTGATTACCAGAATTCAAA+TGG - chr2_4:10440279-10440298 Msa0314610:CDS 30.0%
!!! GTGTTTGATTTCAGGTTTTT+TGG - chr2_4:10440361-10440380 Msa0314610:intron 30.0%
!!! ATCAATCTTGTTTTGCAACA+AGG + chr2_4:10440398-10440417 None:intergenic 30.0%
TGTTGCAAAACAAGATTGAT+TGG - chr2_4:10440398-10440417 Msa0314610:intron 30.0%
! TTTAGTCTTCACTTATCCAA+TGG - chr2_4:10440544-10440563 Msa0314610:intron 30.0%
ACAAGGTTCTTAATATCCAT+TGG + chr2_4:10440563-10440582 None:intergenic 30.0%
TCATAGTTTCTTGTTCAACA+AGG + chr2_4:10440580-10440599 None:intergenic 30.0%
TGTTGAACAAGAAACTATGA+AGG - chr2_4:10440580-10440599 Msa0314610:intron 30.0%
ACAAGAAACTATGAAGGAAT+TGG - chr2_4:10440586-10440605 Msa0314610:intron 30.0%
ACTTGAACCTATTTAACTAG+AGG + chr2_4:10440645-10440664 None:intergenic 30.0%
ATTGTAACAGCATATGAGTA+GGG + chr2_4:10440716-10440735 None:intergenic 30.0%
TATTGTAACAGCATATGAGT+AGG + chr2_4:10440717-10440736 None:intergenic 30.0%
AGATTGTTTCAAATGTAGGT+AGG + chr2_4:10440760-10440779 None:intergenic 30.0%
! GTGTATCTGAAATGTTGATA+AGG - chr2_4:10440896-10440915 Msa0314610:CDS 30.0%
TCTCCAAAGATAAAAAGACA+AGG + chr2_4:10439257-10439276 None:intergenic 30.0%
! TAATTACATTTTGCAGAGGT+AGG + chr2_4:10439314-10439333 None:intergenic 30.0%
ACACTTCATGGTTCATAATA+TGG + chr2_4:10439434-10439453 None:intergenic 30.0%
GAACAAAGAAAAACACTTCA+TGG + chr2_4:10439446-10439465 None:intergenic 30.0%
TGCTTGTATTATGTGCATAT+TGG - chr2_4:10439837-10439856 Msa0314610:CDS 30.0%
AAGCATTTGGTATATGTAAC+AGG - chr2_4:10440035-10440054 Msa0314610:intron 30.0%
TAACAGGCTTTACATGAAAT+TGG - chr2_4:10440051-10440070 Msa0314610:intron 30.0%
CAAGAAAATATGTGTTACCT+GGG - chr2_4:10440076-10440095 Msa0314610:intron 30.0%
ATCTGTTACATGAGTAAAGA+TGG + chr2_4:10440130-10440149 None:intergenic 30.0%
ATCTTTACTCATGTAACAGA+TGG - chr2_4:10440129-10440148 Msa0314610:CDS 30.0%
TCTTTACTCATGTAACAGAT+GGG - chr2_4:10440130-10440149 Msa0314610:CDS 30.0%
TGAATTCTGGTAATCAGATT+CGG + chr2_4:10440277-10440296 None:intergenic 30.0%
TCTGATTACCAGAATTCAAA+TGG - chr2_4:10440279-10440298 Msa0314610:CDS 30.0%
!!! GTGTTTGATTTCAGGTTTTT+TGG - chr2_4:10440361-10440380 Msa0314610:intron 30.0%
!!! ATCAATCTTGTTTTGCAACA+AGG + chr2_4:10440398-10440417 None:intergenic 30.0%
TGTTGCAAAACAAGATTGAT+TGG - chr2_4:10440398-10440417 Msa0314610:intron 30.0%
! TTTAGTCTTCACTTATCCAA+TGG - chr2_4:10440544-10440563 Msa0314610:intron 30.0%
ACAAGGTTCTTAATATCCAT+TGG + chr2_4:10440563-10440582 None:intergenic 30.0%
TCATAGTTTCTTGTTCAACA+AGG + chr2_4:10440580-10440599 None:intergenic 30.0%
TGTTGAACAAGAAACTATGA+AGG - chr2_4:10440580-10440599 Msa0314610:intron 30.0%
ACAAGAAACTATGAAGGAAT+TGG - chr2_4:10440586-10440605 Msa0314610:intron 30.0%
ACTTGAACCTATTTAACTAG+AGG + chr2_4:10440645-10440664 None:intergenic 30.0%
ATTGTAACAGCATATGAGTA+GGG + chr2_4:10440716-10440735 None:intergenic 30.0%
TATTGTAACAGCATATGAGT+AGG + chr2_4:10440717-10440736 None:intergenic 30.0%
AGATTGTTTCAAATGTAGGT+AGG + chr2_4:10440760-10440779 None:intergenic 30.0%
! GTGTATCTGAAATGTTGATA+AGG - chr2_4:10440896-10440915 Msa0314610:CDS 30.0%
TGGAATCTATGATCAAGACA+TGG - chr2_4:10439162-10439181 Msa0314610:three_prime_UTR 35.0%
ATCTATGATCAAGACATGGT+TGG - chr2_4:10439166-10439185 Msa0314610:three_prime_UTR 35.0%
TATCTGCAACAATGTGTCAA+TGG - chr2_4:10439218-10439237 Msa0314610:three_prime_UTR 35.0%
! GATAAAAAGACAAGGCACTT+GGG + chr2_4:10439249-10439268 None:intergenic 35.0%
! AGATAAAAAGACAAGGCACT+TGG + chr2_4:10439250-10439269 None:intergenic 35.0%
! GTGCCTTGTCTTTTTATCTT+TGG - chr2_4:10439251-10439270 Msa0314610:three_prime_UTR 35.0%
CCATTAATGTTTGCAAATGG+TGG + chr2_4:10439559-10439578 None:intergenic 35.0%
CCACCATTTGCAAACATTAA+TGG - chr2_4:10439556-10439575 Msa0314610:CDS 35.0%
GAGCCATTAATGTTTGCAAA+TGG + chr2_4:10439562-10439581 None:intergenic 35.0%
AATTCGTATTGAGACAAGCA+TGG - chr2_4:10439624-10439643 Msa0314610:CDS 35.0%
TCTCAAATTGTTAGCAGACT+TGG - chr2_4:10439780-10439799 Msa0314610:intron 35.0%
!! TGGCTTGTTGGATATAATTG+GGG + chr2_4:10439894-10439913 None:intergenic 35.0%
!! GTGGCTTGTTGGATATAATT+GGG + chr2_4:10439895-10439914 None:intergenic 35.0%
!! TGTGGCTTGTTGGATATAAT+TGG + chr2_4:10439896-10439915 None:intergenic 35.0%
AGTGAAACACAAAGTTCAAG+TGG + chr2_4:10439982-10440001 None:intergenic 35.0%
GCAAGAAAATATGTGTTACC+TGG - chr2_4:10440075-10440094 Msa0314610:intron 35.0%
AAATATGTGTTACCTGGGTT+AGG - chr2_4:10440081-10440100 Msa0314610:intron 35.0%
TTCCAAGCTTAAATCTCTAG+TGG - chr2_4:10440194-10440213 Msa0314610:CDS 35.0%
ATCCACTAGAGATTTAAGCT+TGG + chr2_4:10440199-10440218 None:intergenic 35.0%
TGCAAAACAAGATTGATTGG+AGG - chr2_4:10440401-10440420 Msa0314610:intron 35.0%
GCAAAACAAGATTGATTGGA+GGG - chr2_4:10440402-10440421 Msa0314610:intron 35.0%
CTTAGTGCCTCTAGTTAAAT+AGG - chr2_4:10440635-10440654 Msa0314610:intron 35.0%
TGGAATCTATGATCAAGACA+TGG - chr2_4:10439162-10439181 Msa0314610:three_prime_UTR 35.0%
ATCTATGATCAAGACATGGT+TGG - chr2_4:10439166-10439185 Msa0314610:three_prime_UTR 35.0%
TATCTGCAACAATGTGTCAA+TGG - chr2_4:10439218-10439237 Msa0314610:three_prime_UTR 35.0%
! GATAAAAAGACAAGGCACTT+GGG + chr2_4:10439249-10439268 None:intergenic 35.0%
! AGATAAAAAGACAAGGCACT+TGG + chr2_4:10439250-10439269 None:intergenic 35.0%
! GTGCCTTGTCTTTTTATCTT+TGG - chr2_4:10439251-10439270 Msa0314610:three_prime_UTR 35.0%
CCATTAATGTTTGCAAATGG+TGG + chr2_4:10439559-10439578 None:intergenic 35.0%
CCACCATTTGCAAACATTAA+TGG - chr2_4:10439556-10439575 Msa0314610:CDS 35.0%
GAGCCATTAATGTTTGCAAA+TGG + chr2_4:10439562-10439581 None:intergenic 35.0%
AATTCGTATTGAGACAAGCA+TGG - chr2_4:10439624-10439643 Msa0314610:CDS 35.0%
TCTCAAATTGTTAGCAGACT+TGG - chr2_4:10439780-10439799 Msa0314610:intron 35.0%
!! TGGCTTGTTGGATATAATTG+GGG + chr2_4:10439894-10439913 None:intergenic 35.0%
!! GTGGCTTGTTGGATATAATT+GGG + chr2_4:10439895-10439914 None:intergenic 35.0%
!! TGTGGCTTGTTGGATATAAT+TGG + chr2_4:10439896-10439915 None:intergenic 35.0%
AGTGAAACACAAAGTTCAAG+TGG + chr2_4:10439982-10440001 None:intergenic 35.0%
GCAAGAAAATATGTGTTACC+TGG - chr2_4:10440075-10440094 Msa0314610:intron 35.0%
AAATATGTGTTACCTGGGTT+AGG - chr2_4:10440081-10440100 Msa0314610:intron 35.0%
TTCCAAGCTTAAATCTCTAG+TGG - chr2_4:10440194-10440213 Msa0314610:CDS 35.0%
ATCCACTAGAGATTTAAGCT+TGG + chr2_4:10440199-10440218 None:intergenic 35.0%
TGCAAAACAAGATTGATTGG+AGG - chr2_4:10440401-10440420 Msa0314610:intron 35.0%
GCAAAACAAGATTGATTGGA+GGG - chr2_4:10440402-10440421 Msa0314610:intron 35.0%
CTTAGTGCCTCTAGTTAAAT+AGG - chr2_4:10440635-10440654 Msa0314610:intron 35.0%
GGAGACTCTTTATCTGATAG+TGG - chr2_4:10439272-10439291 Msa0314610:three_prime_UTR 40.0%
! TACATTTTGCAGAGGTAGGA+AGG + chr2_4:10439310-10439329 None:intergenic 40.0%
! ATCGGAAAGTCGATTCCATA+AGG + chr2_4:10439341-10439360 None:intergenic 40.0%
! TTATGGAATCGACTTTCCGA+TGG - chr2_4:10439340-10439359 Msa0314610:three_prime_UTR 40.0%
! TATGGAATCGACTTTCCGAT+GGG - chr2_4:10439341-10439360 Msa0314610:three_prime_UTR 40.0%
!! AATGGCTCTGACATACTCAA+AGG - chr2_4:10439574-10439593 Msa0314610:CDS 40.0%
TATTGAGACAAGCATGGCTA+AGG - chr2_4:10439630-10439649 Msa0314610:CDS 40.0%
!! CAGGGTTTTGTCATCAGTTT+AGG - chr2_4:10439726-10439745 Msa0314610:intron 40.0%
ACATGAGTAAAGATGGCACT+TGG + chr2_4:10440123-10440142 None:intergenic 40.0%
ATGAAAGGCCATGCCATAAT+AGG - chr2_4:10440435-10440454 Msa0314610:intron 40.0%
TGAAAGGCCATGCCATAATA+GGG - chr2_4:10440436-10440455 Msa0314610:intron 40.0%
ACACATACTCTCCCCTATTA+TGG + chr2_4:10440451-10440470 None:intergenic 40.0%
!! ATAGGGGAGAGTATGTGTTT+TGG - chr2_4:10440453-10440472 Msa0314610:CDS 40.0%
!! TAGGGGAGAGTATGTGTTTT+GGG - chr2_4:10440454-10440473 Msa0314610:CDS 40.0%
AAGACCTTATTGCAGTGACT+AGG + chr2_4:10440508-10440527 None:intergenic 40.0%
GGAGACTCTTTATCTGATAG+TGG - chr2_4:10439272-10439291 Msa0314610:three_prime_UTR 40.0%
! TACATTTTGCAGAGGTAGGA+AGG + chr2_4:10439310-10439329 None:intergenic 40.0%
! ATCGGAAAGTCGATTCCATA+AGG + chr2_4:10439341-10439360 None:intergenic 40.0%
! TTATGGAATCGACTTTCCGA+TGG - chr2_4:10439340-10439359 Msa0314610:three_prime_UTR 40.0%
! TATGGAATCGACTTTCCGAT+GGG - chr2_4:10439341-10439360 Msa0314610:three_prime_UTR 40.0%
!! AATGGCTCTGACATACTCAA+AGG - chr2_4:10439574-10439593 Msa0314610:CDS 40.0%
TATTGAGACAAGCATGGCTA+AGG - chr2_4:10439630-10439649 Msa0314610:CDS 40.0%
!! CAGGGTTTTGTCATCAGTTT+AGG - chr2_4:10439726-10439745 Msa0314610:intron 40.0%
ACATGAGTAAAGATGGCACT+TGG + chr2_4:10440123-10440142 None:intergenic 40.0%
ATGAAAGGCCATGCCATAAT+AGG - chr2_4:10440435-10440454 Msa0314610:intron 40.0%
TGAAAGGCCATGCCATAATA+GGG - chr2_4:10440436-10440455 Msa0314610:intron 40.0%
ACACATACTCTCCCCTATTA+TGG + chr2_4:10440451-10440470 None:intergenic 40.0%
!! ATAGGGGAGAGTATGTGTTT+TGG - chr2_4:10440453-10440472 Msa0314610:CDS 40.0%
!! TAGGGGAGAGTATGTGTTTT+GGG - chr2_4:10440454-10440473 Msa0314610:CDS 40.0%
AAGACCTTATTGCAGTGACT+AGG + chr2_4:10440508-10440527 None:intergenic 40.0%
CCAACCGGAAGATTTACCAA+CGG - chr2_4:10439365-10439384 Msa0314610:three_prime_UTR 45.0%
! TCGACCGTTGGTAAATCTTC+CGG + chr2_4:10439372-10439391 None:intergenic 45.0%
GTCAATTGAAGTTCGACCGT+TGG + chr2_4:10439384-10439403 None:intergenic 45.0%
TTGATTGCAGCTCAGCTTCT+TGG - chr2_4:10439517-10439536 Msa0314610:CDS 45.0%
! AAAGGCGTGAACTATGCATC+TGG - chr2_4:10439592-10439611 Msa0314610:CDS 45.0%
! GGGCTATAAATGTGGCTTGT+TGG + chr2_4:10439906-10439925 None:intergenic 45.0%
ACTGCTGAGGGCTATAAATG+TGG + chr2_4:10439914-10439933 None:intergenic 45.0%
GAGTTTCTGCATACTGCTGA+GGG + chr2_4:10439926-10439945 None:intergenic 45.0%
AGAGTTTCTGCATACTGCTG+AGG + chr2_4:10439927-10439946 None:intergenic 45.0%
! TTACCTGGGTTAGGCCTATT+GGG - chr2_4:10440090-10440109 Msa0314610:intron 45.0%
! AACAGATGGGTCTTGTGTTG+AGG - chr2_4:10440143-10440162 Msa0314610:CDS 45.0%
! GAGGGTGTATTCCTGATGAA+AGG - chr2_4:10440420-10440439 Msa0314610:intron 45.0%
TTATGGCATGGCCTTTCATC+AGG + chr2_4:10440434-10440453 None:intergenic 45.0%
GAAAGGCCATGCCATAATAG+GGG - chr2_4:10440437-10440456 Msa0314610:CDS 45.0%
TACTCTCCCCTATTATGGCA+TGG + chr2_4:10440446-10440465 None:intergenic 45.0%
GGATGAATTCCATACCACTG+AGG - chr2_4:10440475-10440494 Msa0314610:CDS 45.0%
AATTCCATACCACTGAGGCT+TGG - chr2_4:10440480-10440499 Msa0314610:CDS 45.0%
GGAACCTAGTCACTGCAATA+AGG - chr2_4:10440501-10440520 Msa0314610:CDS 45.0%
CCAACCGGAAGATTTACCAA+CGG - chr2_4:10439365-10439384 Msa0314610:three_prime_UTR 45.0%
! TCGACCGTTGGTAAATCTTC+CGG + chr2_4:10439372-10439391 None:intergenic 45.0%
GTCAATTGAAGTTCGACCGT+TGG + chr2_4:10439384-10439403 None:intergenic 45.0%
TTGATTGCAGCTCAGCTTCT+TGG - chr2_4:10439517-10439536 Msa0314610:CDS 45.0%
! AAAGGCGTGAACTATGCATC+TGG - chr2_4:10439592-10439611 Msa0314610:CDS 45.0%
! GGGCTATAAATGTGGCTTGT+TGG + chr2_4:10439906-10439925 None:intergenic 45.0%
ACTGCTGAGGGCTATAAATG+TGG + chr2_4:10439914-10439933 None:intergenic 45.0%
GAGTTTCTGCATACTGCTGA+GGG + chr2_4:10439926-10439945 None:intergenic 45.0%
AGAGTTTCTGCATACTGCTG+AGG + chr2_4:10439927-10439946 None:intergenic 45.0%
! TTACCTGGGTTAGGCCTATT+GGG - chr2_4:10440090-10440109 Msa0314610:intron 45.0%
! AACAGATGGGTCTTGTGTTG+AGG - chr2_4:10440143-10440162 Msa0314610:CDS 45.0%
! GAGGGTGTATTCCTGATGAA+AGG - chr2_4:10440420-10440439 Msa0314610:intron 45.0%
TTATGGCATGGCCTTTCATC+AGG + chr2_4:10440434-10440453 None:intergenic 45.0%
GAAAGGCCATGCCATAATAG+GGG - chr2_4:10440437-10440456 Msa0314610:CDS 45.0%
TACTCTCCCCTATTATGGCA+TGG + chr2_4:10440446-10440465 None:intergenic 45.0%
GGATGAATTCCATACCACTG+AGG - chr2_4:10440475-10440494 Msa0314610:CDS 45.0%
AATTCCATACCACTGAGGCT+TGG - chr2_4:10440480-10440499 Msa0314610:CDS 45.0%
GGAACCTAGTCACTGCAATA+AGG - chr2_4:10440501-10440520 Msa0314610:CDS 45.0%
! AATCTTCCGGTTGGTCCCAT+CGG + chr2_4:10439359-10439378 None:intergenic 50.0%
! CCGTTGGTAAATCTTCCGGT+TGG + chr2_4:10439368-10439387 None:intergenic 50.0%
! GTTACCTGGGTTAGGCCTAT+TGG - chr2_4:10440089-10440108 Msa0314610:intron 50.0%
! AATCTTCCGGTTGGTCCCAT+CGG + chr2_4:10439359-10439378 None:intergenic 50.0%
! CCGTTGGTAAATCTTCCGGT+TGG + chr2_4:10439368-10439387 None:intergenic 50.0%
! GTTACCTGGGTTAGGCCTAT+TGG - chr2_4:10440089-10440108 Msa0314610:intron 50.0%
GACTTTCCGATGGGACCAAC+CGG - chr2_4:10439350-10439369 Msa0314610:three_prime_UTR 55.0%
AACTATGCATCTGGCGCAGC+TGG - chr2_4:10439601-10439620 Msa0314610:CDS 55.0%
CACTTGGAGTGCAGCCCAAT+AGG + chr2_4:10440107-10440126 None:intergenic 55.0%
GGTTCCAAGCCTCAGTGGTA+TGG + chr2_4:10440487-10440506 None:intergenic 55.0%
GACTAGGTTCCAAGCCTCAG+TGG + chr2_4:10440492-10440511 None:intergenic 55.0%
GACTTTCCGATGGGACCAAC+CGG - chr2_4:10439350-10439369 Msa0314610:three_prime_UTR 55.0%
AACTATGCATCTGGCGCAGC+TGG - chr2_4:10439601-10439620 Msa0314610:CDS 55.0%
CACTTGGAGTGCAGCCCAAT+AGG + chr2_4:10440107-10440126 None:intergenic 55.0%
GGTTCCAAGCCTCAGTGGTA+TGG + chr2_4:10440487-10440506 None:intergenic 55.0%
GACTAGGTTCCAAGCCTCAG+TGG + chr2_4:10440492-10440511 None:intergenic 55.0%
CAGCCCAATAGGCCTAACCC+AGG + chr2_4:10440096-10440115 None:intergenic 60.0%
CAGCCCAATAGGCCTAACCC+AGG + chr2_4:10440096-10440115 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 10439161 10440927 10439161 ID=Msa0314610;Name=Msa0314610
chr2_4 mRNA 10439161 10440927 10439161 ID=Msa0314610-mRNA-1;Parent=Msa0314610;Name=Msa0314610-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.25|0.2|1|1|1|5|275|380
chr2_4 exon 10439161 10439713 10439161 ID=Msa0314610-mRNA-1:exon:4014;Parent=Msa0314610-mRNA-1
chr2_4 exon 10439788 10440031 10439788 ID=Msa0314610-mRNA-1:exon:4013;Parent=Msa0314610-mRNA-1
chr2_4 exon 10440114 10440359 10440114 ID=Msa0314610-mRNA-1:exon:4012;Parent=Msa0314610-mRNA-1
chr2_4 exon 10440437 10440561 10440437 ID=Msa0314610-mRNA-1:exon:4011;Parent=Msa0314610-mRNA-1
chr2_4 exon 10440678 10440927 10440678 ID=Msa0314610-mRNA-1:exon:4010;Parent=Msa0314610-mRNA-1
chr2_4 CDS 10440678 10440927 10440678 ID=Msa0314610-mRNA-1:cds;Parent=Msa0314610-mRNA-1
chr2_4 CDS 10440437 10440561 10440437 ID=Msa0314610-mRNA-1:cds;Parent=Msa0314610-mRNA-1
chr2_4 CDS 10440114 10440359 10440114 ID=Msa0314610-mRNA-1:cds;Parent=Msa0314610-mRNA-1
chr2_4 CDS 10439788 10440031 10439788 ID=Msa0314610-mRNA-1:cds;Parent=Msa0314610-mRNA-1
chr2_4 CDS 10439436 10439713 10439436 ID=Msa0314610-mRNA-1:cds;Parent=Msa0314610-mRNA-1
chr2_4 three_prime_UTR 10439161 10439435 10439161 ID=Msa0314610-mRNA-1:three_prime_utr;Parent=Msa0314610-mRNA-1
Gene Sequence

>Msa0314610

ATGGAATCTATGATCAAGACATGGTTGGTAGTTCTTATTGTTTTCTTGTCTGCAAACTATCTGCAACAATGTGTCAATGGAAAATCCCAAGTGCCTTGTCTTTTTATCTTTGGAGACTCTTTATCTGATAGTGGAAACAACAATAACCTTCCTACCTCTGCAAAATGTAATTACAATCCTTATGGAATCGACTTTCCGATGGGACCAACCGGAAGATTTACCAACGGTCGAACTTCAATTGACATAATAACTCAGCTTCTTGGCTTTGAGAACTTCATTCCACCATTTGCAAACATTAATGGCTCTGACATACTCAAAGGCGTGAACTATGCATCTGGCGCAGCTGGAATTCGTATTGAGACAAGCATGGCTAAGGGTTTTGTCATCAGTTTAGGATTACAGTTAAAAAATCACAAAGTTATAGTTTCTCAAATTGTTAGCAGACTTGGAAGTCTTAACAAAGCTCAAGAATACCTTAACAAATGCTTGTATTATGTGCATATTGGTAGTAATGATTACATAAACAATTATTTTCTTCCCCAATTATATCCAACAAGCCACATTTATAGCCCTCAGCAGTATGCAGAAACTCTAATTGAAGAGTTATCTTTGAATTTACAGGCTTTACATGAAATTGGAGCAAGAAAATATGTGTTACCTGGGTTAGGCCTATTGGGCTGCACTCCAAGTGCCATCTTTACTCATGTAACAGATGGGTCTTGTGTTGAGGAGCAAAATGACCTTGCATTCATTTTTAATTCCAAGCTTAAATCTCTAGTGGATCATTTCAATAATAAGTTCTCTGCTGATTCCAAATTCATATTTATAAACAGTACATCCGAATCTGATTACCAGAATTCAAATGGTTTTTTGGTTGCAAATGCTCCTTGTTGCAAAACAAGATTGATTGGAGGGTGTATTCCTGATGAAAGGCCATGCCATAATAGGGGAGAGTATGTGTTTTGGGATGAATTCCATACCACTGAGGCTTGGAACCTAGTCACTGCAATAAGGTCTTATAATTCATATAATAATTTAGTCTTCACTTATCCAATGGATATTAAGAACCTTGTTGAACAAGAAACTATGAAGGAATTGGAGCCTATAAATGTAATCACATCAAAGCTTAGTGCCTCTAGTTAA
Protein sequence

>Msa0314610

MESMIKTWLVVLIVFLSANYLQQCVNGKSQVPCLFIFGDSLSDSGNNNNLPTSAKCNYNPYGIDFPMGPTGRFTNGRTSIDIITQLLGFENFIPPFANINGSDILKGVNYASGAAGIRIETSMAKGFVISLGLQLKNHKVIVSQIVSRLGSLNKAQEYLNKCLYYVHIGSNDYINNYFLPQLYPTSHIYSPQQYAETLIEELSLNLQALHEIGARKYVLPGLGLLGCTPSAIFTHVTDGSCVEEQNDLAFIFNSKLKSLVDHFNNKFSADSKFIFINSTSESDYQNSNGFLVANAPCCKTRLIGGCIPDERPCHNRGEYVFWDEFHTTEAWNLVTAIRSYNSYNNLVFTYPMDIKNLVEQETMKELEPINVITSKLSASS*