AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0482580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0482580 MtrunA17_Chr3g0095391 95.551 472 17 1 1 472 1 468 0.0 928
Msa0482580 MtrunA17_Chr1g0182791 32.200 559 251 22 1 475 1 515 4.10e-51 182
Msa0482580 MtrunA17_Chr7g0262691 44.398 241 96 7 262 468 202 438 1.14e-41 155
Msa0482580 MtrunA17_Chr1g0193321 58.333 144 53 4 253 391 402 543 3.22e-35 140
Msa0482580 MtrunA17_Chr7g0271251 35.762 302 138 10 152 405 245 538 1.03e-28 120
Msa0482580 MtrunA17_Chr1g0153241 58.000 100 38 2 291 388 65 162 4.71e-27 110
Msa0482580 MtrunA17_Chr7g0270871 49.107 112 49 3 287 390 173 284 2.87e-23 101
Msa0482580 MtrunA17_Chr5g0402031 68.571 70 20 1 322 391 114 181 4.11e-22 97.8
Msa0482580 MtrunA17_Chr3g0095411 97.619 42 1 0 474 515 1 42 5.39e-21 85.9
Msa0482580 MtrunA17_Chr7g0231461 45.600 125 55 4 256 375 243 359 3.89e-20 93.6
Msa0482580 MtrunA17_Chr4g0074161 57.143 63 27 0 315 377 208 270 2.65e-17 84.0
Msa0482580 MtrunA17_Chr1g0190731 53.968 63 29 0 315 377 195 257 1.08e-15 78.6
Msa0482580 MtrunA17_Chr5g0393721 44.304 79 37 2 308 379 217 295 8.89e-14 72.4
Msa0482580 MtrunA17_Chr1g0207311 37.500 88 45 2 300 377 178 265 1.63e-12 68.2
Msa0482580 MtrunA17_Chr1g0152131 39.450 109 61 3 270 377 221 325 4.18e-12 68.2
Msa0482580 MtrunA17_Chr3g0131771 47.945 73 36 2 315 385 149 221 4.77e-12 67.4
Msa0482580 MtrunA17_Chr3g0134741 34.694 98 51 3 315 407 231 320 6.33e-12 67.0
Msa0482580 MtrunA17_Chr5g0421111 51.562 64 30 1 315 377 367 430 6.37e-12 68.2
Msa0482580 MtrunA17_Chr6g0484271 33.333 153 79 5 233 375 79 218 1.15e-11 65.5
Msa0482580 MtrunA17_Chr7g0234761 50.000 64 31 1 315 377 319 382 1.22e-11 67.0
Msa0482580 MtrunA17_Chr3g0144641 50.000 64 31 1 315 377 193 256 1.64e-11 66.2
Msa0482580 MtrunA17_Chr1g0152651 44.118 68 33 1 315 377 276 343 1.84e-11 65.9
Msa0482580 MtrunA17_Chr8g0385911 35.000 120 70 5 315 432 147 260 1.90e-11 65.5
Msa0482580 MtrunA17_Chr8g0339091 50.000 64 31 1 315 377 293 356 2.17e-11 66.2
Msa0482580 MtrunA17_Chr1g0174161 31.132 106 71 2 315 418 162 267 2.97e-11 64.7
Msa0482580 MtrunA17_Chr8g0365941 50.000 64 31 1 315 377 307 370 3.39e-11 65.5
Msa0482580 MtrunA17_Chr8g0363921 46.875 64 33 1 315 377 153 216 5.62e-11 63.5
Msa0482580 MtrunA17_Chr4g0035101 48.438 64 32 1 315 377 145 208 7.55e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0482580 AT2G43010.2 35.388 503 228 18 8 498 6 423 1.47e-59 203
Msa0482580 AT2G43010.1 35.248 505 228 19 8 498 6 425 1.44e-57 198
Msa0482580 AT2G43010.3 35.248 505 228 19 8 498 13 432 1.88e-57 197
Msa0482580 AT2G43010.5 35.446 505 227 20 8 498 48 467 4.23e-57 197
Msa0482580 AT2G43010.4 35.368 475 212 17 8 472 6 395 2.14e-54 189
Msa0482580 AT2G20180.4 36.842 437 193 17 1 410 1 381 8.41e-45 164
Msa0482580 AT2G20180.6 36.842 437 193 17 1 410 1 381 8.41e-45 164
Msa0482580 AT2G20180.2 36.842 437 193 17 1 410 1 381 8.41e-45 164
Msa0482580 AT2G20180.3 36.842 437 193 17 1 410 1 381 8.41e-45 164
Msa0482580 AT3G59060.3 44.144 333 115 14 195 497 146 437 8.70e-45 164
Msa0482580 AT3G59060.2 44.144 333 115 14 195 497 146 437 8.70e-45 164
Msa0482580 AT3G59060.4 44.144 333 115 14 195 497 146 437 8.70e-45 164
Msa0482580 AT3G59060.1 44.411 331 115 14 195 497 146 435 1.79e-44 163
Msa0482580 AT2G20180.8 35.176 398 181 16 1 377 1 342 5.11e-39 145
Msa0482580 AT2G20180.7 38.352 352 147 13 74 410 14 310 9.09e-38 144
Msa0482580 AT2G20180.1 38.352 352 147 13 74 410 14 310 9.09e-38 144
Msa0482580 AT2G20180.5 38.352 352 147 13 74 410 14 310 9.09e-38 144
Msa0482580 AT1G09530.3 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0482580 AT1G09530.2 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0482580 AT1G09530.5 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0482580 AT1G09530.1 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0482580 AT1G09530.4 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0482580 AT1G09530.6 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0482580 AT4G28800.1 28.753 473 221 17 27 463 19 411 3.85e-28 117
Msa0482580 AT4G28800.2 28.541 473 216 18 27 463 31 417 2.31e-26 112
Msa0482580 AT5G67110.1 48.529 136 48 3 254 387 48 163 3.11e-26 106
Msa0482580 AT4G28790.1 28.993 407 217 15 20 408 18 370 5.22e-25 107
Msa0482580 AT4G28815.2 40.217 184 75 8 301 473 53 212 5.60e-25 103
Msa0482580 AT4G36930.1 73.611 72 17 1 319 388 197 268 6.12e-25 107
Msa0482580 AT4G28815.1 42.391 184 71 10 301 473 129 288 1.38e-24 104
Msa0482580 AT2G46970.2 41.379 174 81 7 254 414 133 298 3.00e-24 105
Msa0482580 AT2G46970.3 41.379 174 81 7 254 414 142 307 3.61e-24 105
Msa0482580 AT2G46970.1 41.520 171 79 7 257 414 167 329 4.46e-24 105
Msa0482580 AT4G00050.2 53.271 107 39 3 273 375 68 167 2.37e-22 97.8
Msa0482580 AT4G00050.3 53.271 107 39 3 273 375 170 269 6.29e-22 98.2
Msa0482580 AT4G00050.1 53.271 107 39 3 273 375 170 269 6.86e-22 98.2
Msa0482580 AT2G24260.2 58.730 63 26 0 315 377 37 99 1.12e-18 86.3
Msa0482580 AT2G24260.1 58.730 63 26 0 315 377 140 202 4.93e-18 86.3
Msa0482580 AT4G28790.2 27.446 368 199 12 20 373 18 331 5.02e-18 85.9
Msa0482580 AT5G58010.1 54.054 74 31 1 304 377 93 163 6.11e-18 85.1
Msa0482580 AT4G30980.1 57.143 63 27 0 315 377 132 194 1.26e-17 84.3
Msa0482580 AT4G30980.2 57.143 63 27 0 315 377 180 242 3.60e-17 83.6
Msa0482580 AT3G62090.1 49.474 95 45 3 308 400 160 253 8.56e-17 82.4
Msa0482580 AT4G28811.1 36.992 246 123 6 248 474 295 527 1.08e-16 83.6
Msa0482580 AT3G62090.2 49.474 95 45 3 308 400 177 270 1.11e-16 82.0
Msa0482580 AT1G26260.3 33.333 165 92 5 260 406 103 267 1.10e-14 75.9
Msa0482580 AT1G26260.4 33.333 165 92 5 260 406 154 318 1.43e-14 75.9
Msa0482580 AT1G26260.1 33.333 165 92 5 260 406 154 318 1.43e-14 75.9
Msa0482580 AT1G26260.6 33.333 165 92 5 260 406 154 318 1.43e-14 75.9
Msa0482580 AT1G26260.2 33.333 165 92 5 260 406 154 318 1.43e-14 75.9
Msa0482580 AT1G26260.5 33.333 165 92 5 260 406 132 296 1.52e-14 75.9
Msa0482580 AT1G68240.1 38.710 124 67 4 315 432 63 183 1.15e-13 70.1
Msa0482580 AT5G61270.1 46.078 102 53 2 287 387 135 235 2.31e-13 72.0
Msa0482580 AT5G61270.2 46.078 102 53 2 287 387 47 147 2.46e-13 70.9
Msa0482580 AT5G61270.3 46.078 102 53 2 287 387 47 147 2.46e-13 70.9
Msa0482580 AT4G33880.1 35.652 115 57 4 296 403 247 351 4.45e-13 71.2
Msa0482580 AT5G43175.1 40.789 76 40 1 307 377 126 201 4.74e-13 68.9
Msa0482580 AT1G68240.2 39.091 110 61 3 315 418 63 172 4.86e-13 67.8
Msa0482580 AT1G02340.1 36.667 120 52 3 281 400 113 208 5.44e-13 70.1
Msa0482580 AT1G02340.2 36.667 120 52 3 281 400 106 201 6.83e-13 69.7
Msa0482580 AT5G50915.1 29.358 218 100 8 238 415 53 256 1.15e-12 68.9
Msa0482580 AT5G50915.2 29.358 218 100 8 238 415 53 256 1.15e-12 68.9
Msa0482580 AT2G14760.1 38.710 93 49 2 290 377 217 306 1.46e-12 69.3
Msa0482580 AT1G27740.1 36.449 107 59 3 291 391 148 251 1.69e-12 68.2
Msa0482580 AT5G50915.3 29.279 222 95 9 238 415 53 256 1.90e-12 68.2
Msa0482580 AT5G50915.4 29.279 222 95 9 238 415 53 256 1.90e-12 68.2
Msa0482580 AT1G68920.3 36.170 141 79 6 315 446 304 442 5.92e-12 68.6
Msa0482580 AT1G68920.1 36.170 141 79 6 315 446 305 443 5.98e-12 68.6
Msa0482580 AT1G68920.4 36.170 141 79 6 315 446 305 443 5.98e-12 68.6
Msa0482580 AT1G68920.2 36.170 141 79 6 315 446 305 443 5.98e-12 68.6
Msa0482580 AT3G23690.1 34.028 144 86 4 239 377 117 256 6.32e-12 67.8
Msa0482580 AT2G18300.3 30.808 198 113 7 274 448 129 325 8.32e-12 67.4
Msa0482580 AT2G18300.2 30.808 198 113 7 274 448 129 325 9.60e-12 67.0
Msa0482580 AT2G14760.3 42.647 68 34 1 315 377 252 319 1.34e-11 66.6
Msa0482580 AT4G34530.1 48.438 64 32 1 315 377 174 237 1.68e-11 66.2
Msa0482580 AT3G07340.2 39.216 102 43 3 292 377 225 323 1.86e-11 66.6
Msa0482580 AT3G07340.1 39.216 102 43 3 292 377 225 323 2.27e-11 66.6
Msa0482580 AT5G48560.2 50.000 64 31 1 315 377 303 366 3.93e-11 65.9
Msa0482580 AT5G67110.2 40.367 109 44 3 254 362 48 135 4.15e-11 61.6
Msa0482580 AT5G48560.1 50.000 64 31 1 315 377 303 366 4.64e-11 65.5
Msa0482580 AT4G36540.1 36.697 109 60 3 277 377 99 206 6.41e-11 63.9
Msa0482580 AT4G36540.2 36.697 109 60 3 277 377 99 206 6.54e-11 63.9
Msa0482580 AT1G10120.2 48.438 64 32 1 315 377 208 271 7.06e-11 64.3
Msa0482580 AT1G10120.1 48.438 64 32 1 315 377 208 271 7.06e-11 64.3
Msa0482580 AT2G18300.1 30.653 199 110 8 274 448 129 323 7.65e-11 63.9
Msa0482580 AT5G67110.3 37.500 136 41 4 254 387 48 141 7.80e-11 62.0

Find 135 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGATCATCTTAAAATTT+AGG 0.159860 3_3:+89572537 None:intergenic
ACCGTTCCTGATTGGAATTT+TGG 0.193756 3_3:-89575403 Msa0482580:CDS
GGCAAGTGTTCAAGGAAATA+AGG 0.207090 3_3:+89572341 None:intergenic
TTATATAACAATGAAGAAAT+TGG 0.215837 3_3:-89572417 Msa0482580:three_prime_UTR
AACAATGAAGAAATTGGTTT+TGG 0.267766 3_3:-89572411 Msa0482580:three_prime_UTR
TACTTCATCTTCTGGTGGTT+CGG 0.273371 3_3:-89574536 Msa0482580:CDS
GTTACTCCATAGGTTCTTCT+AGG 0.280860 3_3:+89572728 None:intergenic
GAACTTGTTTCTTATTTGTT+TGG 0.281722 3_3:+89575175 None:intergenic
TGATGCTGTGGGTGGCAAAA+TGG 0.294348 3_3:-89572949 Msa0482580:CDS
CATTGGTCCACTGCTATTGC+TGG 0.300560 3_3:+89572992 None:intergenic
TGTTCAAGTGGATCCTCAAT+AGG 0.303381 3_3:+89575045 None:intergenic
AGGCACCTAAAACAGGATTT+TGG 0.303664 3_3:+89573538 None:intergenic
TAAATCAGCCGTGAGGAAAA+AGG 0.304657 3_3:-89574314 Msa0482580:CDS
GAGTCTAAATGTGAAATAAA+AGG 0.312754 3_3:-89572464 Msa0482580:three_prime_UTR
ACATCATTTCTGACTTGTTC+AGG 0.332564 3_3:+89574616 None:intergenic
ATCACTTCAGTTACAACTTC+AGG 0.334793 3_3:-89573833 Msa0482580:intron
AAGGTGGAAGTTCAGATAAA+AGG 0.339660 3_3:+89575007 None:intergenic
GATGCAAAATCCTGCTCTTT+CGG 0.342576 3_3:-89573499 Msa0482580:CDS
GGGTATCAAGCAACGGTGTT+TGG 0.343568 3_3:-89574657 Msa0482580:CDS
ATGAACTTGTGGAGCTTCTA+TGG 0.349007 3_3:-89575224 Msa0482580:CDS
CATCTTGATCCTGTTGGACT+TGG 0.357855 3_3:+89574686 None:intergenic
GTTTATAAATAGAGGCAATT+AGG 0.360186 3_3:-89572565 Msa0482580:three_prime_UTR
ACTTCATCTTCTGGTGGTTC+GGG 0.366507 3_3:-89574535 Msa0482580:CDS
AAGATGATGAAACTGTTTCA+TGG 0.378684 3_3:-89575080 Msa0482580:CDS
TTGAGTGTGTCCTTATGCTT+TGG 0.390026 3_3:+89576224 None:intergenic
GTTGTTTCTTTGCAATGAAT+CGG 0.393694 3_3:+89574888 None:intergenic
GAAAATATGTTTATAAATAG+AGG 0.394472 3_3:-89572573 Msa0482580:three_prime_UTR
GGCATCTCAGCGGTCAGGTT+CGG 0.395919 3_3:-89574293 Msa0482580:CDS
ATGTTTGCTGTTCCACTCAT+TGG 0.397921 3_3:+89572975 None:intergenic
TGCTTACATCTTGATCCTGT+TGG 0.402600 3_3:+89574680 None:intergenic
TTTGTTGCTGGTTACTCCAT+AGG 0.402807 3_3:+89572718 None:intergenic
GACGGATCCAGAGGCATTCT+CGG 0.403301 3_3:+89573600 None:intergenic
GCAAGTGTTCAAGGAAATAA+GGG 0.408689 3_3:+89572342 None:intergenic
GTCATGACTTCTTGTAGATA+AGG 0.410497 3_3:+89574489 None:intergenic
GGTGCAAATAGGTACTGGTT+TGG 0.413855 3_3:-89575446 Msa0482580:intron
TCAGCACTATATGTCACAAA+TGG 0.421098 3_3:-89573676 Msa0482580:CDS
TTGTTATATAATTTCAATGA+AGG 0.423411 3_3:+89572429 None:intergenic
ATAGAAGCTCCACAAGTTCA+TGG 0.431688 3_3:+89575226 None:intergenic
TAATATGAGAACAATATTAG+AGG 0.432266 3_3:+89572894 None:intergenic
TCTTATGCAAAATGCTTCTC+AGG 0.438287 3_3:-89573448 Msa0482580:intron
TTGAAAGACTCGACGTTACA+AGG 0.440966 3_3:+89574988 None:intergenic
ACAATTCCTCGGCATGAGAA+TGG 0.443028 3_3:-89574586 Msa0482580:CDS
CTCACACTTTCCAAAGCATA+AGG 0.443353 3_3:-89576234 Msa0482580:five_prime_UTR
TGAACAACACCGTTCCTGAT+TGG 0.444912 3_3:-89575411 Msa0482580:CDS
TTGTTTCTTTGCAATGAATC+GGG 0.448535 3_3:+89574889 None:intergenic
CGGAAGCAACCAAGTCCAAC+AGG 0.451058 3_3:-89574695 Msa0482580:CDS
CCATATCTGTACATATTCAT+TGG 0.451704 3_3:+89573053 None:intergenic
GTAGATGCTAAAGTAACATT+GGG 0.457098 3_3:+89574814 None:intergenic
TGGCTCGTTAATGTCTGGTT+TGG 0.458380 3_3:+89573558 None:intergenic
TAGTTGAAGGCACCTAAAAC+AGG 0.459214 3_3:+89573531 None:intergenic
CTATATGTCACAAATGGGTA+TGG 0.459276 3_3:-89573670 Msa0482580:CDS
GGAGCAATATGCTCGTTACA+TGG 0.460185 3_3:-89573478 Msa0482580:CDS
TAATCAAAAGAAGCAACCTA+TGG 0.462757 3_3:-89575362 Msa0482580:CDS
GATCATCTTAAAATTTAGGT+TGG 0.466929 3_3:+89572541 None:intergenic
CAATTCCTCGGCATGAGAAT+GGG 0.468759 3_3:-89574585 Msa0482580:CDS
AGAAAAGTTTACAACCTTGC+CGG 0.469128 3_3:+89574852 None:intergenic
GTTCAAGTGGATCCTCAATA+GGG 0.473250 3_3:+89575046 None:intergenic
AACAGGATCAAGATGTAAGC+AGG 0.473432 3_3:-89574678 Msa0482580:CDS
TCGGCATGAGAATGGGAAAT+CGG 0.473920 3_3:-89574578 Msa0482580:CDS
GATCCTCAATAGGGTATTGT+TGG 0.475150 3_3:+89575055 None:intergenic
TTCTGTTAGGTGATGTGGAT+GGG 0.477428 3_3:-89573732 Msa0482580:intron
GAACATAATTCTTGTTCAAG+TGG 0.477770 3_3:+89575033 None:intergenic
TAGGTGATGTGGATGGGATC+TGG 0.479810 3_3:-89573726 Msa0482580:CDS
AACAACGATTTGTGTGGATC+CGG 0.480481 3_3:-89574871 Msa0482580:CDS
ATAGGAAATTCCTGAACAAA+AGG 0.481459 3_3:+89574940 None:intergenic
GCAATTACCGAGAATGCCTC+TGG 0.483577 3_3:-89573607 Msa0482580:CDS
TGTTCAGGAATTTCCTATGT+CGG 0.485624 3_3:-89574935 Msa0482580:CDS
CCAATGAATATGTACAGATA+TGG 0.491789 3_3:-89573053 Msa0482580:CDS
TGTAGATGCTAAAGTAACAT+TGG 0.495901 3_3:+89574813 None:intergenic
CATGACACCGATGATGCTAC+CGG 0.496261 3_3:-89573703 Msa0482580:CDS
TTTCTGTTAGGTGATGTGGA+TGG 0.500303 3_3:-89573733 Msa0482580:intron
GATGCTGTGGGTGGCAAAAT+GGG 0.501876 3_3:-89572948 Msa0482580:CDS
GGTGGTTCGGGAAGTAGTCT+TGG 0.502929 3_3:-89574523 Msa0482580:CDS
TCACTCCCAAAATTCCAATC+AGG 0.503469 3_3:+89575397 None:intergenic
AATCAAAAGAAGCAACCTAT+GGG 0.506530 3_3:-89575361 Msa0482580:CDS
ATTTCTGACTTGTTCAGGCT+CGG 0.509459 3_3:+89574621 None:intergenic
ACATATATTTATAGTTGAGC+TGG 0.511215 3_3:+89572685 None:intergenic
GGAATTCCTAGAAGAACCTA+TGG 0.512827 3_3:-89572734 Msa0482580:three_prime_UTR
GAATGGGAAATCGGAGATGT+TGG 0.520509 3_3:-89574569 Msa0482580:CDS
ACTCATACCTCACAGTAGTA+AGG 0.524016 3_3:-89574098 Msa0482580:intron
CAGCACTATATGTCACAAAT+GGG 0.528954 3_3:-89573675 Msa0482580:CDS
AGTGCATAATCTTTCAGAAA+GGG 0.530854 3_3:-89574248 Msa0482580:intron
GACATATAGTGCTGATATCC+CGG 0.534372 3_3:+89573684 None:intergenic
GTTACTTTAGCATCTACAAA+CGG 0.535195 3_3:-89574808 Msa0482580:CDS
GTAGAAAGTAGCTGAAAGCT+TGG 0.535957 3_3:+89576150 None:intergenic
CAAAGCATCAATGTTAGAAG+AGG 0.538478 3_3:-89573872 Msa0482580:CDS
TGTCTGGTTTGGTGTCTGAC+AGG 0.541123 3_3:+89573569 None:intergenic
GGCATTCTCGGTAATTGCAT+CGG 0.543563 3_3:+89573612 None:intergenic
TGAAACCTCGGAGCCGACAT+AGG 0.544656 3_3:+89574922 None:intergenic
TGATATCCCGGTAGCATCAT+CGG 0.547358 3_3:+89573696 None:intergenic
GCATATTGCTCCGAAAGAGC+AGG 0.550353 3_3:+89573489 None:intergenic
TTACAGGTTAATTAGTCTAG+AGG 0.560592 3_3:-89572755 Msa0482580:three_prime_UTR
CAAAGAAACAACGATTTGTG+TGG 0.566041 3_3:-89574877 Msa0482580:CDS
GACAATAGAGAAGTATGTGT+TGG 0.566323 3_3:+89572921 None:intergenic
TGGTGTCTGACAGGAAGAAA+CGG 0.568009 3_3:+89573578 None:intergenic
ATTGGTCCACTGCTATTGCT+GGG 0.572900 3_3:+89572993 None:intergenic
CGATTTGTGTGGATCCGGCA+AGG 0.573793 3_3:-89574866 Msa0482580:CDS
GTGGAGCTTCTATGGCAGAA+TGG 0.575038 3_3:-89575216 Msa0482580:CDS
CATCAGCAAGTCAGAAACAA+AGG 0.580980 3_3:-89576128 Msa0482580:five_prime_UTR
AGCGGTCAGGTTCGGCTCGT+AGG 0.585796 3_3:-89574285 Msa0482580:CDS
CCAGAAGATGAAGTAAAAGC+AGG 0.586941 3_3:+89574544 None:intergenic
GATCCAACAATACCCTATTG+AGG 0.587994 3_3:-89575058 Msa0482580:CDS
AAGTGCATAATCTTTCAGAA+AGG 0.591388 3_3:-89574249 Msa0482580:CDS
TATATGTCACAAATGGGTAT+GGG 0.594345 3_3:-89573669 Msa0482580:CDS
CCCAAAATTCCAATCAGGAA+CGG 0.594898 3_3:+89575402 None:intergenic
ATGACACCGATGATGCTACC+GGG 0.598634 3_3:-89573702 Msa0482580:CDS
TTAAGATGATCTATTCGTTG+CGG 0.601252 3_3:-89572529 Msa0482580:three_prime_UTR
AGCAAACATTAATGATGCTG+TGG 0.601820 3_3:-89572961 Msa0482580:CDS
GATTTCCCATTCTCATGCCG+AGG 0.602580 3_3:+89574580 None:intergenic
CAGGCTGGACCATGAACTTG+TGG 0.607340 3_3:-89575235 Msa0482580:CDS
GATGGATGTTGAAGATTCAG+TGG 0.609243 3_3:-89574452 Msa0482580:CDS
GAGCAATATGCTCGTTACAT+GGG 0.614005 3_3:-89573477 Msa0482580:CDS
GGAAATTCCTGAACAAAAGG+CGG 0.618190 3_3:+89574943 None:intergenic
CTGTGGGTGGCAAAATGGGT+AGG 0.622005 3_3:-89572944 Msa0482580:CDS
ATGTTCAGAAGACAATTCCT+CGG 0.630703 3_3:-89574597 Msa0482580:CDS
GAGTGTTCGACGATGACAGT+TGG 0.633825 3_3:-89574730 Msa0482580:CDS
GGAACATGATGATGAAACCT+CGG 0.639628 3_3:+89574910 None:intergenic
ATATTGAACACACACCCCAT+AGG 0.642122 3_3:+89575346 None:intergenic
ACAGGATCAAGATGTAAGCA+GGG 0.649737 3_3:-89574677 Msa0482580:CDS
AGATTCAGTGGAACAAAGCG+AGG 0.656069 3_3:-89574440 Msa0482580:intron
GTAAGCAGGGTATCAAGCAA+CGG 0.657240 3_3:-89574664 Msa0482580:CDS
ACAGTTGGTTCGAGTTATTG+CGG 0.658618 3_3:-89574715 Msa0482580:CDS
GAAGAAACGGACGGATCCAG+AGG 0.660505 3_3:+89573591 None:intergenic
AACATTAATGATGCTGTGGG+TGG 0.661408 3_3:-89572957 Msa0482580:CDS
GTCTGACAGGAAGAAACGGA+CGG 0.668045 3_3:+89573582 None:intergenic
AATAGCAGTGGACCAATGAG+TGG 0.668226 3_3:-89572987 Msa0482580:CDS
GGTCCACTGCTATTGCTGGG+TGG 0.669356 3_3:+89572996 None:intergenic
ATTCCACCCAGCAATAGCAG+TGG 0.670400 3_3:-89572999 Msa0482580:CDS
AATTTCCTATGTCGGCTCCG+AGG 0.681257 3_3:-89574927 Msa0482580:CDS
ATCAAAAGAAGCAACCTATG+GGG 0.695787 3_3:-89575360 Msa0482580:intron
GCAAACATTAATGATGCTGT+GGG 0.698935 3_3:-89572960 Msa0482580:CDS
GATTATGCACTTCAGCAGCG+CGG 0.709911 3_3:+89574260 None:intergenic
TGACAAACCTTACTACTGTG+AGG 0.713524 3_3:+89574091 None:intergenic
AAAGACTCGACGTTACAAGG+TGG 0.729579 3_3:+89574991 None:intergenic
CAGAACTTAAATCAGCCGTG+AGG 0.748263 3_3:-89574321 Msa0482580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGGAATAAAAAATTTAAA+GGG + chr3_3:89572962-89572981 None:intergenic 10.0%
!! AAAAGGAATAAAAAATTTAA+AGG + chr3_3:89572963-89572982 None:intergenic 10.0%
!!! GATTTTAATATTGATAAAAA+AGG + chr3_3:89572980-89572999 None:intergenic 10.0%
!! TATTTGATTATTCATTTAAA+TGG - chr3_3:89573016-89573035 Msa0482580:CDS 10.0%
!! AGAATATCATTAATTTATAA+GGG + chr3_3:89575454-89575473 None:intergenic 10.0%
!! AATGTGAATGTTATAAATAA+TGG - chr3_3:89572542-89572561 Msa0482580:three_prime_UTR 15.0%
!!! TTCTTATTTTCTTCTTTTTT+AGG - chr3_3:89572660-89572679 Msa0482580:three_prime_UTR 15.0%
!!! AAACTAATTTTCTTTCATTT+TGG - chr3_3:89573115-89573134 Msa0482580:intron 15.0%
!!! AAATTTTAGAGACAAAATTA+CGG - chr3_3:89573803-89573822 Msa0482580:intron 15.0%
!! TGAAAAACATCTAATTATAA+AGG + chr3_3:89574193-89574212 None:intergenic 15.0%
!!! ATTTTTTTGATTTTTCTGTT+AGG - chr3_3:89574837-89574856 Msa0482580:CDS 15.0%
!! GAATATCATTAATTTATAAG+GGG + chr3_3:89575453-89575472 None:intergenic 15.0%
!! GAGAATATCATTAATTTATA+AGG + chr3_3:89575455-89575474 None:intergenic 15.0%
!! GAAAATATGTTTATAAATAG+AGG - chr3_3:89576009-89576028 Msa0482580:intron 15.0%
!! AATAGATCATCTTAAAATTT+AGG + chr3_3:89576048-89576067 None:intergenic 15.0%
!! TTGTTATATAATTTCAATGA+AGG + chr3_3:89576156-89576175 None:intergenic 15.0%
!! TTATATAACAATGAAGAAAT+TGG - chr3_3:89576165-89576184 Msa0482580:five_prime_UTR 15.0%
!! ATAACATTCACATTTAGATA+AGG + chr3_3:89572536-89572555 None:intergenic 20.0%
!! AACATTAAACACAACAAATT+AGG + chr3_3:89572747-89572766 None:intergenic 20.0%
!!! TATTTTATTCTTCTGCTTAA+TGG - chr3_3:89573050-89573069 Msa0482580:CDS 20.0%
!!! AATTTTAGAGACAAAATTAC+GGG - chr3_3:89573804-89573823 Msa0482580:intron 20.0%
!! AGGTAAAATTAATTTCCATA+GGG + chr3_3:89575486-89575505 None:intergenic 20.0%
!! AAGGTAAAATTAATTTCCAT+AGG + chr3_3:89575487-89575506 None:intergenic 20.0%
!!! ATTAATTTTACCTTGTATGT+TGG - chr3_3:89575493-89575512 Msa0482580:intron 20.0%
!! TAATATGAGAACAATATTAG+AGG + chr3_3:89575691-89575710 None:intergenic 20.0%
!!! TATACAAGTGACTTATTTTT+TGG - chr3_3:89575948-89575967 Msa0482580:intron 20.0%
!!! ATACAAGTGACTTATTTTTT+GGG - chr3_3:89575949-89575968 Msa0482580:intron 20.0%
!! AAATCTATTTTGCTCAGTTT+AGG - chr3_3:89572490-89572509 Msa0482580:three_prime_UTR 25.0%
!! TTTTTATGATCTTTCTCTTC+TGG - chr3_3:89572782-89572801 Msa0482580:three_prime_UTR 25.0%
!! TTTTATGATCTTTCTCTTCT+GGG - chr3_3:89572783-89572802 Msa0482580:three_prime_UTR 25.0%
!! AGACTTGATTTTTCCAATTA+TGG - chr3_3:89572841-89572860 Msa0482580:three_prime_UTR 25.0%
!! GACTTGATTTTTCCAATTAT+GGG - chr3_3:89572842-89572861 Msa0482580:three_prime_UTR 25.0%
!! GAACTTGTTTCTTATTTGTT+TGG + chr3_3:89573410-89573429 None:intergenic 25.0%
!! TTCACTGAGTTATGATTTTA+CGG - chr3_3:89574221-89574240 Msa0482580:intron 25.0%
!! ATTTTACGGTTTGTGTTAAT+AGG - chr3_3:89574235-89574254 Msa0482580:intron 25.0%
!!! AACCGTGTTTTATTTTTTGT+AGG - chr3_3:89574517-89574536 Msa0482580:CDS 25.0%
! TGCCTACAAAAAATAAAACA+CGG + chr3_3:89574522-89574541 None:intergenic 25.0%
!!! TGCTAGTGGTTAATTTTTTA+AGG - chr3_3:89574544-89574563 Msa0482580:CDS 25.0%
!!! ACAAAAAATTTGTTAGTAGC+AGG - chr3_3:89574569-89574588 Msa0482580:CDS 25.0%
!!! ATGCAAGAGATTATTTTGTA+TGG + chr3_3:89574790-89574809 None:intergenic 25.0%
! AAAAATTCTTTAGCAATGTG+AGG + chr3_3:89574823-89574842 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+TGG + chr3_3:89575257-89575276 None:intergenic 25.0%
! ACTGTTTACATGTAAGATAT+AGG + chr3_3:89575314-89575333 None:intergenic 25.0%
!! TTAAGTTAGTTTATCCAAAC+AGG - chr3_3:89575409-89575428 Msa0482580:CDS 25.0%
!! TAAGTTAGTTTATCCAAACA+GGG - chr3_3:89575410-89575429 Msa0482580:CDS 25.0%
!! TTTTAAATTTAGACCCTGTT+TGG + chr3_3:89575426-89575445 None:intergenic 25.0%
!!! TTACTTGTCATTTTGTTTAC+AGG - chr3_3:89575811-89575830 Msa0482580:intron 25.0%
! ACATATATTTATAGTTGAGC+TGG + chr3_3:89575900-89575919 None:intergenic 25.0%
! GTTTATAAATAGAGGCAATT+AGG - chr3_3:89576017-89576036 Msa0482580:intron 25.0%
! GATCATCTTAAAATTTAGGT+TGG + chr3_3:89576044-89576063 None:intergenic 25.0%
! GAGTCTAAATGTGAAATAAA+AGG - chr3_3:89576118-89576137 Msa0482580:five_prime_UTR 25.0%
!!! AACAATGAAGAAATTGGTTT+TGG - chr3_3:89576171-89576190 Msa0482580:five_prime_UTR 25.0%
AATTTCAAGAGTCCCATAAT+TGG + chr3_3:89572857-89572876 None:intergenic 30.0%
AATTATGGGACTCTTGAAAT+TGG - chr3_3:89572856-89572875 Msa0482580:three_prime_UTR 30.0%
ACTCTTGAAATTGGAATTCT+TGG - chr3_3:89572865-89572884 Msa0482580:three_prime_UTR 30.0%
TTAAGAGTTTAGATCATGTG+TGG + chr3_3:89572938-89572957 None:intergenic 30.0%
GGAGTCAAATTCTACTTAAA+AGG - chr3_3:89573071-89573090 Msa0482580:intron 30.0%
!! TCTTTCATTTTGGTGCAAAT+AGG - chr3_3:89573125-89573144 Msa0482580:intron 30.0%
TAATCAAAAGAAGCAACCTA+TGG - chr3_3:89573220-89573239 Msa0482580:intron 30.0%
AATCAAAAGAAGCAACCTAT+GGG - chr3_3:89573221-89573240 Msa0482580:intron 30.0%
AACCATGTGTTTAACATTAC+AGG - chr3_3:89573328-89573347 Msa0482580:intron 30.0%
AAGATGATGAAACTGTTTCA+TGG - chr3_3:89573502-89573521 Msa0482580:CDS 30.0%
GAACATAATTCTTGTTCAAG+TGG + chr3_3:89573552-89573571 None:intergenic 30.0%
ATAGGAAATTCCTGAACAAA+AGG + chr3_3:89573645-89573664 None:intergenic 30.0%
! TTGTTTCTTTGCAATGAATC+GGG + chr3_3:89573696-89573715 None:intergenic 30.0%
!! GTTGTTTCTTTGCAATGAAT+CGG + chr3_3:89573697-89573716 None:intergenic 30.0%
GTAGATGCTAAAGTAACATT+GGG + chr3_3:89573771-89573790 None:intergenic 30.0%
TGTAGATGCTAAAGTAACAT+TGG + chr3_3:89573772-89573791 None:intergenic 30.0%
! GTTACTTTAGCATCTACAAA+CGG - chr3_3:89573774-89573793 Msa0482580:intron 30.0%
AAGTGCATAATCTTTCAGAA+AGG - chr3_3:89574333-89574352 Msa0482580:intron 30.0%
AGTGCATAATCTTTCAGAAA+GGG - chr3_3:89574334-89574353 Msa0482580:intron 30.0%
ATAATCTTTCAGAAAGGGTA+AGG - chr3_3:89574339-89574358 Msa0482580:intron 30.0%
TAATCTTTCAGAAAGGGTAA+GGG - chr3_3:89574340-89574359 Msa0482580:intron 30.0%
!! TTATTGGTTTATTGATGCAG+AGG - chr3_3:89574420-89574439 Msa0482580:intron 30.0%
ATTAAATTGACGCGAATTCA+GGG + chr3_3:89574602-89574621 None:intergenic 30.0%
GCGATTAAATCATACAACAT+GGG + chr3_3:89574648-89574667 None:intergenic 30.0%
TGCGATTAAATCATACAACA+TGG + chr3_3:89574649-89574668 None:intergenic 30.0%
TATATGTCACAAATGGGTAT+GGG - chr3_3:89574913-89574932 Msa0482580:CDS 30.0%
AGACTATTTAGGAGATCTTA+TGG - chr3_3:89575211-89575230 Msa0482580:CDS 30.0%
AAACTATCATGAAGAACTTG+TGG + chr3_3:89575281-89575300 None:intergenic 30.0%
! TATTCTCATGTTTTACCCTA+TGG - chr3_3:89575468-89575487 Msa0482580:intron 30.0%
CCATATCTGTACATATTCAT+TGG + chr3_3:89575532-89575551 None:intergenic 30.0%
CCAATGAATATGTACAGATA+TGG - chr3_3:89575529-89575548 Msa0482580:intron 30.0%
! TTGACTATTTTGTACAGCTT+GGG + chr3_3:89575557-89575576 None:intergenic 30.0%
! TTTGACTATTTTGTACAGCT+TGG + chr3_3:89575558-89575577 None:intergenic 30.0%
! TTACAGGTTAATTAGTCTAG+AGG - chr3_3:89575827-89575846 Msa0482580:intron 30.0%
TTAAGATGATCTATTCGTTG+CGG - chr3_3:89576053-89576072 Msa0482580:intron 30.0%
AGAAAAAGCAGGAACAAACA+AGG - chr3_3:89572399-89572418 Msa0482580:three_prime_UTR 35.0%
!! ATTTTGGTGCAAATAGGTAC+TGG - chr3_3:89573131-89573150 Msa0482580:intron 35.0%
ATCAAAAGAAGCAACCTATG+GGG - chr3_3:89573222-89573241 Msa0482580:intron 35.0%
AGCCTGTAATGTTAAACACA+TGG + chr3_3:89573333-89573352 None:intergenic 35.0%
ATGTGTTTAACATTACAGGC+TGG - chr3_3:89573332-89573351 Msa0482580:intron 35.0%
AAGGTGGAAGTTCAGATAAA+AGG + chr3_3:89573578-89573597 None:intergenic 35.0%
TGTTCAGGAATTTCCTATGT+CGG - chr3_3:89573647-89573666 Msa0482580:CDS 35.0%
CAAAGAAACAACGATTTGTG+TGG - chr3_3:89573705-89573724 Msa0482580:CDS 35.0%
AGAAAAGTTTACAACCTTGC+CGG + chr3_3:89573733-89573752 None:intergenic 35.0%
!! ACATCATTTCTGACTTGTTC+AGG + chr3_3:89573969-89573988 None:intergenic 35.0%
ATGTTCAGAAGACAATTCCT+CGG - chr3_3:89573985-89574004 Msa0482580:intron 35.0%
GTCATGACTTCTTGTAGATA+AGG + chr3_3:89574096-89574115 None:intergenic 35.0%
CAAGAAGTCATGACAAAAAG+AGG - chr3_3:89574102-89574121 Msa0482580:CDS 35.0%
TGACAAAAAGAGGAAAGTGA+TGG - chr3_3:89574112-89574131 Msa0482580:CDS 35.0%
!! TCGCTTACAAGAAGTGTTAT+TGG - chr3_3:89574404-89574423 Msa0482580:intron 35.0%
! TTTTTGTAGGCAATTGCTAG+TGG - chr3_3:89574530-89574549 Msa0482580:CDS 35.0%
GATTAAATTGACGCGAATTC+AGG + chr3_3:89574603-89574622 None:intergenic 35.0%
GTTGTATGATTTAATCGCAG+TGG - chr3_3:89574650-89574669 Msa0482580:CDS 35.0%
! CAAAGCATCAATGTTAGAAG+AGG - chr3_3:89574710-89574729 Msa0482580:CDS 35.0%
ATCACTTCAGTTACAACTTC+AGG - chr3_3:89574749-89574768 Msa0482580:CDS 35.0%
! GATTTTTCTGTTAGGTGATG+TGG - chr3_3:89574845-89574864 Msa0482580:CDS 35.0%
TCAGCACTATATGTCACAAA+TGG - chr3_3:89574906-89574925 Msa0482580:CDS 35.0%
CAGCACTATATGTCACAAAT+GGG - chr3_3:89574907-89574926 Msa0482580:CDS 35.0%
CTATATGTCACAAATGGGTA+TGG - chr3_3:89574912-89574931 Msa0482580:CDS 35.0%
!! AATTGCATCGGATTTTGAAG+TGG + chr3_3:89574961-89574980 None:intergenic 35.0%
!! CATCTGATTTTGGTAGTTGA+AGG + chr3_3:89575067-89575086 None:intergenic 35.0%
! CAGGATTTTGCATCTGATTT+TGG + chr3_3:89575077-89575096 None:intergenic 35.0%
TCTTATGCAAAATGCTTCTC+AGG - chr3_3:89575134-89575153 Msa0482580:CDS 35.0%
AAAATGCTTCTCAGGTACTT+AGG - chr3_3:89575142-89575161 Msa0482580:CDS 35.0%
! TCAGGTACTTAGGATTTGTT+TGG - chr3_3:89575152-89575171 Msa0482580:CDS 35.0%
AAACACCTGAGAGACTATTT+AGG - chr3_3:89575200-89575219 Msa0482580:CDS 35.0%
CAAAATAGTGCCAACATACA+AGG + chr3_3:89575506-89575525 None:intergenic 35.0%
! TGACTATTTTGTACAGCTTG+GGG + chr3_3:89575556-89575575 None:intergenic 35.0%
AGCAAACATTAATGATGCTG+TGG - chr3_3:89575621-89575640 Msa0482580:intron 35.0%
GCAAACATTAATGATGCTGT+GGG - chr3_3:89575622-89575641 Msa0482580:intron 35.0%
! GACAATAGAGAAGTATGTGT+TGG + chr3_3:89575664-89575683 None:intergenic 35.0%
!! GGCAAACATATTTTTGTTGC+TGG + chr3_3:89575879-89575898 None:intergenic 35.0%
GCAAGTGTTCAAGGAAATAA+GGG + chr3_3:89576243-89576262 None:intergenic 35.0%
CTCACACTTTCCAAAGCATA+AGG - chr3_3:89572348-89572367 Msa0482580:three_prime_UTR 40.0%
TTGAGTGTGTCCTTATGCTT+TGG + chr3_3:89572361-89572380 None:intergenic 40.0%
!!! CCTGCTTTTTCTTCTGTGTT+TGG + chr3_3:89572391-89572410 None:intergenic 40.0%
CCAAACACAGAAGAAAAAGC+AGG - chr3_3:89572388-89572407 Msa0482580:three_prime_UTR 40.0%
GTAGAAAGTAGCTGAAAGCT+TGG + chr3_3:89572435-89572454 None:intergenic 40.0%
CATCAGCAAGTCAGAAACAA+AGG - chr3_3:89572454-89572473 Msa0482580:three_prime_UTR 40.0%
! ACCGTTCCTGATTGGAATTT+TGG - chr3_3:89573179-89573198 Msa0482580:intron 40.0%
CCCAAAATTCCAATCAGGAA+CGG + chr3_3:89573183-89573202 None:intergenic 40.0%
! CCGTTCCTGATTGGAATTTT+GGG - chr3_3:89573180-89573199 Msa0482580:intron 40.0%
TCACTCCCAAAATTCCAATC+AGG + chr3_3:89573188-89573207 None:intergenic 40.0%
ATATTGAACACACACCCCAT+AGG + chr3_3:89573239-89573258 None:intergenic 40.0%
ATAGAAGCTCCACAAGTTCA+TGG + chr3_3:89573359-89573378 None:intergenic 40.0%
ATGAACTTGTGGAGCTTCTA+TGG - chr3_3:89573358-89573377 Msa0482580:intron 40.0%
GATCCAACAATACCCTATTG+AGG - chr3_3:89573524-89573543 Msa0482580:CDS 40.0%
!! GATCCTCAATAGGGTATTGT+TGG + chr3_3:89573530-89573549 None:intergenic 40.0%
GTTCAAGTGGATCCTCAATA+GGG + chr3_3:89573539-89573558 None:intergenic 40.0%
TGTTCAAGTGGATCCTCAAT+AGG + chr3_3:89573540-89573559 None:intergenic 40.0%
TTGAAAGACTCGACGTTACA+AGG + chr3_3:89573597-89573616 None:intergenic 40.0%
!! AAAGGCGGTTTTGTATTCGT+CGG + chr3_3:89573627-89573646 None:intergenic 40.0%
! TACAAAACCGCCTTTTGTTC+AGG - chr3_3:89573632-89573651 Msa0482580:CDS 40.0%
GGAAATTCCTGAACAAAAGG+CGG + chr3_3:89573642-89573661 None:intergenic 40.0%
! GGAACATGATGATGAAACCT+CGG + chr3_3:89573675-89573694 None:intergenic 40.0%
AACAACGATTTGTGTGGATC+CGG - chr3_3:89573711-89573730 Msa0482580:CDS 40.0%
!! ACAGTTGGTTCGAGTTATTG+CGG - chr3_3:89573867-89573886 Msa0482580:CDS 40.0%
TGCTTACATCTTGATCCTGT+TGG + chr3_3:89573905-89573924 None:intergenic 40.0%
AACAGGATCAAGATGTAAGC+AGG - chr3_3:89573904-89573923 Msa0482580:intron 40.0%
ACAGGATCAAGATGTAAGCA+GGG - chr3_3:89573905-89573924 Msa0482580:intron 40.0%
!! ATTTCTGACTTGTTCAGGCT+CGG + chr3_3:89573964-89573983 None:intergenic 40.0%
CCAGAAGATGAAGTAAAAGC+AGG + chr3_3:89574041-89574060 None:intergenic 40.0%
!! CCTGCTTTTACTTCATCTTC+TGG - chr3_3:89574038-89574057 Msa0482580:intron 40.0%
! GCTTTTACTTCATCTTCTGG+TGG - chr3_3:89574041-89574060 Msa0482580:intron 40.0%
TACTTCATCTTCTGGTGGTT+CGG - chr3_3:89574046-89574065 Msa0482580:intron 40.0%
GATGGATGTTGAAGATTCAG+TGG - chr3_3:89574130-89574149 Msa0482580:CDS 40.0%
AGGTAAAAAGATAGAGTGCG+CGG + chr3_3:89574173-89574192 None:intergenic 40.0%
TAAATCAGCCGTGAGGAAAA+AGG - chr3_3:89574268-89574287 Msa0482580:CDS 40.0%
ACTCATACCTCACAGTAGTA+AGG - chr3_3:89574484-89574503 Msa0482580:CDS 40.0%
TGACAAACCTTACTACTGTG+AGG + chr3_3:89574494-89574513 None:intergenic 40.0%
TTTCTGTTAGGTGATGTGGA+TGG - chr3_3:89574849-89574868 Msa0482580:CDS 40.0%
TTCTGTTAGGTGATGTGGAT+GGG - chr3_3:89574850-89574869 Msa0482580:CDS 40.0%
!! GACATATAGTGCTGATATCC+CGG + chr3_3:89574901-89574920 None:intergenic 40.0%
!!! TTTTGAAGTGGAGGAAACGA+AGG + chr3_3:89574949-89574968 None:intergenic 40.0%
!!! GATTTTGGCTCGTTAATGTC+TGG + chr3_3:89575032-89575051 None:intergenic 40.0%
! ACGAGCCAAAATCCTGTTTT+AGG - chr3_3:89575039-89575058 Msa0482580:CDS 40.0%
! AGGCACCTAAAACAGGATTT+TGG + chr3_3:89575047-89575066 None:intergenic 40.0%
!! TAGTTGAAGGCACCTAAAAC+AGG + chr3_3:89575054-89575073 None:intergenic 40.0%
GATGCAAAATCCTGCTCTTT+CGG - chr3_3:89575083-89575102 Msa0482580:CDS 40.0%
GAGCAATATGCTCGTTACAT+GGG - chr3_3:89575105-89575124 Msa0482580:CDS 40.0%
GATCTCCTAAATAGTCTCTC+AGG + chr3_3:89575208-89575227 None:intergenic 40.0%
!! ATGTTTGCTGTTCCACTCAT+TGG + chr3_3:89575610-89575629 None:intergenic 40.0%
AACATTAATGATGCTGTGGG+TGG - chr3_3:89575625-89575644 Msa0482580:intron 40.0%
GGAATTCCTAGAAGAACCTA+TGG - chr3_3:89575848-89575867 Msa0482580:intron 40.0%
GTTACTCCATAGGTTCTTCT+AGG + chr3_3:89575857-89575876 None:intergenic 40.0%
! TTTGTTGCTGGTTACTCCAT+AGG + chr3_3:89575867-89575886 None:intergenic 40.0%
GGCAAGTGTTCAAGGAAATA+AGG + chr3_3:89576244-89576263 None:intergenic 40.0%
!! GGTGCAAATAGGTACTGGTT+TGG - chr3_3:89573136-89573155 Msa0482580:intron 45.0%
TGAACAACACCGTTCCTGAT+TGG - chr3_3:89573171-89573190 Msa0482580:intron 45.0%
AAAGACTCGACGTTACAAGG+TGG + chr3_3:89573594-89573613 None:intergenic 45.0%
CATCTTGATCCTGTTGGACT+TGG + chr3_3:89573899-89573918 None:intergenic 45.0%
! GTAAGCAGGGTATCAAGCAA+CGG - chr3_3:89573918-89573937 Msa0482580:intron 45.0%
ACAATTCCTCGGCATGAGAA+TGG - chr3_3:89573996-89574015 Msa0482580:intron 45.0%
CAATTCCTCGGCATGAGAAT+GGG - chr3_3:89573997-89574016 Msa0482580:intron 45.0%
TCGGCATGAGAATGGGAAAT+CGG - chr3_3:89574004-89574023 Msa0482580:intron 45.0%
GAATGGGAAATCGGAGATGT+TGG - chr3_3:89574013-89574032 Msa0482580:intron 45.0%
ACTTCATCTTCTGGTGGTTC+GGG - chr3_3:89574047-89574066 Msa0482580:intron 45.0%
AGATTCAGTGGAACAAAGCG+AGG - chr3_3:89574142-89574161 Msa0482580:CDS 45.0%
CAGAACTTAAATCAGCCGTG+AGG - chr3_3:89574261-89574280 Msa0482580:CDS 45.0%
! CTGAGATGCCTTTTTCCTCA+CGG + chr3_3:89574279-89574298 None:intergenic 45.0%
!! TGAGGAAAAAGGCATCTCAG+CGG - chr3_3:89574279-89574298 Msa0482580:CDS 45.0%
TGATATCCCGGTAGCATCAT+CGG + chr3_3:89574889-89574908 None:intergenic 45.0%
!!! TGCATCGGATTTTGAAGTGG+AGG + chr3_3:89574958-89574977 None:intergenic 45.0%
GGCATTCTCGGTAATTGCAT+CGG + chr3_3:89574973-89574992 None:intergenic 45.0%
TGGTGTCTGACAGGAAGAAA+CGG + chr3_3:89575007-89575026 None:intergenic 45.0%
TGGCTCGTTAATGTCTGGTT+TGG + chr3_3:89575027-89575046 None:intergenic 45.0%
GGAGCAATATGCTCGTTACA+TGG - chr3_3:89575104-89575123 Msa0482580:CDS 45.0%
ATTGGTCCACTGCTATTGCT+GGG + chr3_3:89575592-89575611 None:intergenic 45.0%
AATAGCAGTGGACCAATGAG+TGG - chr3_3:89575595-89575614 Msa0482580:intron 45.0%
GTGGAGCTTCTATGGCAGAA+TGG - chr3_3:89573366-89573385 Msa0482580:intron 50.0%
!! AATTTCCTATGTCGGCTCCG+AGG - chr3_3:89573655-89573674 Msa0482580:CDS 50.0%
GAGTGTTCGACGATGACAGT+TGG - chr3_3:89573852-89573871 Msa0482580:CDS 50.0%
GGGTATCAAGCAACGGTGTT+TGG - chr3_3:89573925-89573944 Msa0482580:intron 50.0%
GATTTCCCATTCTCATGCCG+AGG + chr3_3:89574005-89574024 None:intergenic 50.0%
!! AAAAAGGCATCTCAGCGGTC+AGG - chr3_3:89574284-89574303 Msa0482580:CDS 50.0%
GATTATGCACTTCAGCAGCG+CGG + chr3_3:89574325-89574344 None:intergenic 50.0%
TAGGTGATGTGGATGGGATC+TGG - chr3_3:89574856-89574875 Msa0482580:CDS 50.0%
CATGACACCGATGATGCTAC+CGG - chr3_3:89574879-89574898 Msa0482580:CDS 50.0%
ATGACACCGATGATGCTACC+GGG - chr3_3:89574880-89574899 Msa0482580:CDS 50.0%
GCAATTACCGAGAATGCCTC+TGG - chr3_3:89574975-89574994 Msa0482580:CDS 50.0%
GTCTGACAGGAAGAAACGGA+CGG + chr3_3:89575003-89575022 None:intergenic 50.0%
!! TGTCTGGTTTGGTGTCTGAC+AGG + chr3_3:89575016-89575035 None:intergenic 50.0%
GCATATTGCTCCGAAAGAGC+AGG + chr3_3:89575096-89575115 None:intergenic 50.0%
ATTCCACCCAGCAATAGCAG+TGG - chr3_3:89575583-89575602 Msa0482580:intron 50.0%
CATTGGTCCACTGCTATTGC+TGG + chr3_3:89575593-89575612 None:intergenic 50.0%
TGATGCTGTGGGTGGCAAAA+TGG - chr3_3:89575633-89575652 Msa0482580:intron 50.0%
GATGCTGTGGGTGGCAAAAT+GGG - chr3_3:89575634-89575653 Msa0482580:intron 50.0%
CAGGCTGGACCATGAACTTG+TGG - chr3_3:89573347-89573366 Msa0482580:intron 55.0%
TGAAACCTCGGAGCCGACAT+AGG + chr3_3:89573663-89573682 None:intergenic 55.0%
CGATTTGTGTGGATCCGGCA+AGG - chr3_3:89573716-89573735 Msa0482580:CDS 55.0%
CGGAAGCAACCAAGTCCAAC+AGG - chr3_3:89573887-89573906 Msa0482580:intron 55.0%
! GGTGGTTCGGGAAGTAGTCT+TGG - chr3_3:89574059-89574078 Msa0482580:intron 55.0%
!! GACGGATCCAGAGGCATTCT+CGG + chr3_3:89574985-89575004 None:intergenic 55.0%
GAAGAAACGGACGGATCCAG+AGG + chr3_3:89574994-89575013 None:intergenic 55.0%
CTGTGGGTGGCAAAATGGGT+AGG - chr3_3:89575638-89575657 Msa0482580:intron 55.0%
GGCATCTCAGCGGTCAGGTT+CGG - chr3_3:89574289-89574308 Msa0482580:CDS 60.0%
GGTCCACTGCTATTGCTGGG+TGG + chr3_3:89575589-89575608 None:intergenic 60.0%
! AGCGGTCAGGTTCGGCTCGT+AGG - chr3_3:89574297-89574316 Msa0482580:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 89572336 89576268 89572336 ID=Msa0482580;Name=Msa0482580
chr3_3 mRNA 89572336 89576268 89572336 ID=Msa0482580-mRNA-1;Parent=Msa0482580;Name=Msa0482580-mRNA-1;_AED=0.04;_eAED=0.04;_QI=199|1|1|1|0.85|0.75|8|581|524
chr3_3 exon 89572336 89573075 89572336 ID=Msa0482580-mRNA-1:exon:26214;Parent=Msa0482580-mRNA-1
chr3_3 exon 89573449 89573745 89573449 ID=Msa0482580-mRNA-1:exon:26213;Parent=Msa0482580-mRNA-1
chr3_3 exon 89573834 89573899 89573834 ID=Msa0482580-mRNA-1:exon:26212;Parent=Msa0482580-mRNA-1
chr3_3 exon 89574099 89574164 89574099 ID=Msa0482580-mRNA-1:exon:26211;Parent=Msa0482580-mRNA-1
chr3_3 exon 89574249 89574347 89574249 ID=Msa0482580-mRNA-1:exon:26210;Parent=Msa0482580-mRNA-1
chr3_3 exon 89574441 89575254 89574441 ID=Msa0482580-mRNA-1:exon:26209;Parent=Msa0482580-mRNA-1
chr3_3 exon 89575361 89575457 89575361 ID=Msa0482580-mRNA-1:exon:26208;Parent=Msa0482580-mRNA-1
chr3_3 exon 89576093 89576268 89576093 ID=Msa0482580-mRNA-1:exon:26207;Parent=Msa0482580-mRNA-1
chr3_3 five_prime_UTR 89576093 89576268 89576093 ID=Msa0482580-mRNA-1:five_prime_utr;Parent=Msa0482580-mRNA-1
chr3_3 five_prime_UTR 89575435 89575457 89575435 ID=Msa0482580-mRNA-1:five_prime_utr;Parent=Msa0482580-mRNA-1
chr3_3 CDS 89575361 89575434 89575361 ID=Msa0482580-mRNA-1:cds;Parent=Msa0482580-mRNA-1
chr3_3 CDS 89574441 89575254 89574441 ID=Msa0482580-mRNA-1:cds;Parent=Msa0482580-mRNA-1
chr3_3 CDS 89574249 89574347 89574249 ID=Msa0482580-mRNA-1:cds;Parent=Msa0482580-mRNA-1
chr3_3 CDS 89574099 89574164 89574099 ID=Msa0482580-mRNA-1:cds;Parent=Msa0482580-mRNA-1
chr3_3 CDS 89573834 89573899 89573834 ID=Msa0482580-mRNA-1:cds;Parent=Msa0482580-mRNA-1
chr3_3 CDS 89573449 89573745 89573449 ID=Msa0482580-mRNA-1:cds;Parent=Msa0482580-mRNA-1
chr3_3 CDS 89572917 89573075 89572917 ID=Msa0482580-mRNA-1:cds;Parent=Msa0482580-mRNA-1
chr3_3 three_prime_UTR 89572336 89572916 89572336 ID=Msa0482580-mRNA-1:three_prime_utr;Parent=Msa0482580-mRNA-1
Gene Sequence

>Msa0482580

ATGAACAACACCGTTCCTGATTGGAATTTTGGGAGTGATAGTTTTGTCACTAATCAAAAGAAGCAACCTATGGGGCTGGACCATGAACTTGTGGAGCTTCTATGGCAGAATGGTCATGTAGTATTGAATAGCCAAACAAATAAGAAACAAGTTCTGAATTCAAATACAATCAATTCAAGACAAGTTCATAAGAATCTTCAATCAACAACTTTAAGCAACTTGATTCAAGATGATGAAACTGTTTCATGGATCCAACAATACCCTATTGAGGATCCACTTGAACAAGAATTATGTTCAAACCTTTTATCTGAACTTCCACCTTGTAACGTCGAGTCTTTCAATTCGCAACCGACGAATACAAAACCGCCTTTTGTTCAGGAATTTCCTATGTCGGCTCCGAGGTTTCATCATCATGTTCCCGATTCATTGCAAAGAAACAACGATTTGTGTGGATCCGGCAAGGTTGTAAACTTTTCTCACTTTTCAAGACTTCCCAATGTTACTTTAGCATCTACAAACGGCGATGCAAATTTTAGAGACAAAATTACGGGTAATCTGTCACAATGTGATGTTAGAGAGTGTTCGACGATGACAGTTGGTTCGAGTTATTGCGGAAGCAACCAAGTCCAACAGGATCAAGATGTAAGCAGGGTATCAAGCAACGGTGTTTGGACTAATTTATCGACCGAGCCTGAACAAGTCAGAAATGATGTTCAGAAGACAATTCCTCGGCATGAGAATGGGAAATCGGAGATGTTGGAACCTGCTTTTACTTCATCTTCTGGTGGTTCGGGAAGTAGTCTTGGAAAAACTTGTTCCTTATCTACAAGAAGTCATGACAAAAAGAGGAAAGTGATGGATGTTGAAGATTCAGTGGAACAAAGCGAGGATACAGAACTTAAATCAGCCGTGAGGAAAAAGGCATCTCAGCGGTCAGGTTCGGCTCGTAGGAACCGCGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGGCGAAGAGATAGAATTAATGAGAAGATGAAAGCATTACAACAACTCATACCTCACAGTAGTAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGGTGATGTGGATGGGATCTGGCATGACACCGATGATGCTACCGGGATATCAGCACTATATGTCACAAATGGGTATGGGAATGACTACACCTTCGTTTCCTCCACTTCAAAATCCGATGCAATTACCGAGAATGCCTCTGGATCCGTCCGTTTCTTCCTGTCAGACACCAAACCAGACATTAACGAGCCAAAATCCTGTTTTAGGTGCCTTCAACTACCAAAATCAGATGCAAAATCCTGCTCTTTCGGAGCAATATGCTCGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATATGTACAGATATGGTCCCCAAGCTGTACAAAATAGTCAAACAATGATTCCACCCAGCAATAGCAGTGGACCAATGAGTGGAACAGCAAACATTAATGATGCTGTGGGTGGCAAAATGGGTAGGCCAACACATACTTCTCTATTGTCATAG
Protein sequence

>Msa0482580

MNNTVPDWNFGSDSFVTNQKKQPMGLDHELVELLWQNGHVVLNSQTNKKQVLNSNTINSRQVHKNLQSTTLSNLIQDDETVSWIQQYPIEDPLEQELCSNLLSELPPCNVESFNSQPTNTKPPFVQEFPMSAPRFHHHVPDSLQRNNDLCGSGKVVNFSHFSRLPNVTLASTNGDANFRDKITGNLSQCDVRECSTMTVGSSYCGSNQVQQDQDVSRVSSNGVWTNLSTEPEQVRNDVQKTIPRHENGKSEMLEPAFTSSSGGSGSSLGKTCSLSTRSHDKKRKVMDVEDSVEQSEDTELKSAVRKKASQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMTPMMLPGYQHYMSQMGMGMTTPSFPPLQNPMQLPRMPLDPSVSSCQTPNQTLTSQNPVLGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQAVQNSQTMIPPSNSSGPMSGTANINDAVGGKMGRPTHTSLLS*