AlfalfaGEDB | Msa0315670

M. sativa cultivar zhongmu-4 / Msa0315670

KEGG: K17545
GO: GO:0000003 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0001932 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0007349 GO:0007399 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009555 GO:0009556 GO:0009574 GO:0009653 GO:0009966 GO:0009987 GO:0010245 GO:0010342 GO:0010646 GO:0010975 GO:0015630 GO:0015631 GO:0016043 GO:0019220 GO:0019222 GO:0019953 GO:0022008 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0030054 GO:0030154 GO:0030334 GO:0031323 GO:0031344 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032506 GO:0032872 GO:0032879 GO:0034293 GO:0040012 GO:0042325 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043408 GO:0043934 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045595 GO:0045664 GO:0046328 GO:0048229 GO:0048236 GO:0048583 GO:0048646 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051270 GO:0051301 GO:0051321 GO:0051704 GO:0051960 GO:0055044 GO:0060255 GO:0060284 GO:0061640 GO:0065007 GO:0070302 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090036 GO:0120035 GO:1900744 GO:1902407 GO:1902410 GO:1902531 GO:1903046 GO:1903047 GO:2000026 GO:2000145 GO:2001222
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0315670	RHN72332.1	98.822	1358	16	0	1	1358	46	1403	0.0	2753

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0315670	sp\|F4JY37\|RUK_ARATH	64.731	1378	452	13	1	1356	1	1366	0.0	1788

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0195020	Msa0315670	0.958182	4.427186e-116	-8.615850e-47
Msa0237190	Msa0315670	0.995288	8.431390e-215	-8.615850e-47
Msa0274960	Msa0315670	0.995645	2.222311e-218	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0315670	MtrunA17_Chr2g0286501	98.822	1358	16	0	1	1358	46	1403	0.0	2753
Msa0315670	MtrunA17_Chr5g0400111	88.676	627	41	2	732	1358	2	598	0.0	1082
Msa0315670	MtrunA17_Chr1g0170551	37.262	263	152	5	1	258	4	258	5.88e-47	184
Msa0315670	MtrunA17_Chr8g0351491	34.211	266	157	6	1	258	13	268	3.00e-38	145
Msa0315670	MtrunA17_Chr4g0038091	33.969	262	160	5	2	256	18	273	3.88e-38	156
Msa0315670	MtrunA17_Chr4g0038501	33.588	262	161	5	2	256	18	273	8.01e-38	155
Msa0315670	MtrunA17_Chr7g0245031	32.468	308	175	10	1	291	145	436	9.25e-38	149
Msa0315670	MtrunA17_Chr3g0129721	33.333	273	160	7	2	260	22	286	2.62e-37	142
Msa0315670	MtrunA17_Chr8g0353621	33.083	266	156	5	1	256	7	260	5.20e-37	141
Msa0315670	MtrunA17_Chr6g0478601	32.542	295	161	7	1	258	108	401	1.14e-35	143

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0315670	AT5G18700.1	64.731	1378	452	13	1	1356	1	1366	0.0	1788
Msa0315670	AT1G33940.2	63.351	191	69	1	798	987	96	286	9.17e-74	255
Msa0315670	AT1G33940.2	61.682	214	71	5	1154	1358	286	497	1.10e-70	246
Msa0315670	AT1G33940.1	63.351	191	69	1	798	987	96	286	9.17e-74	255
Msa0315670	AT1G33940.1	61.682	214	71	5	1154	1358	286	497	1.10e-70	246
Msa0315670	AT1G50240.3	37.643	263	151	5	1	258	3	257	3.34e-46	182
Msa0315670	AT1G50240.2	37.643	263	151	5	1	258	3	257	3.34e-46	182
Msa0315670	AT2G45490.1	34.231	260	155	4	4	256	22	272	2.68e-41	154
Msa0315670	AT3G61960.2	32.963	270	162	5	1	258	7	269	1.15e-38	154
Msa0315670	AT3G61960.1	32.963	270	162	5	1	258	7	269	1.64e-38	154

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Find 326 sgRNAs with CRISPR-Local

Find 483 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTCCTTGAATCATCTG+AGG	0.667624	2_4:+12149529	None:intergenic
AAAGGGTATGGAAGATTTGC+TGG	0.439666	2_4:-12146477	Msa0315670:CDS
AAAGGTGGACTTGGATTCCC+AGG	0.501209	2_4:+12150211	None:intergenic
AAAGTTGCTACGTCAATCCA+AGG	0.616185	2_4:-12149072	Msa0315670:CDS
AAATAGCAGATATGTCAGAA+CGG	0.679005	2_4:+12149486	None:intergenic
AAATCTGATTAAACTTGCGG+AGG	0.672086	2_4:-12147724	Msa0315670:CDS
AAATTCGAAGAAGGGTTATT+TGG	0.243107	2_4:+12147011	None:intergenic
AAATTGACAAAAGGTGGACT+TGG	0.472083	2_4:+12150202	None:intergenic
AAATTTCACCAACCAGAATA+AGG	0.325667	2_4:+12145875	None:intergenic
AACAAGTGAATGTTGGATTT+TGG	0.170334	2_4:+12147825	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTTGCAGACTGTTTACAA+AGG	-	chr2_4:12145929-12145948	Msa0315670:exon	30.0%
TAACCTGCAAAAGAGAAAAT+CGG	+	chr2_4:12146177-12146196	None:intergenic	30.0%
CATATTAAAGACGAATCGTT+TGG	-	chr2_4:12146380-12146399	Msa0315670:CDS	30.0%
GGGATCTACTTTCTATATTA+CGG	-	chr2_4:12146620-12146639	Msa0315670:CDS	30.0%
AATGAAGCTACCATAATCAA+AGG	+	chr2_4:12146687-12146706	None:intergenic	30.0%
TAATTACAAAGACGAATTGC+AGG	-	chr2_4:12146887-12146906	Msa0315670:CDS	30.0%
AGTTCATTAACAGAATCTTC+AGG	+	chr2_4:12146924-12146943	None:intergenic	30.0%
TTAAACTGAGGGAAAACAAA+AGG	+	chr2_4:12146996-12147015	None:intergenic	30.0%
ACTCTTGTATGCACTAAAAT+TGG	-	chr2_4:12147023-12147042	Msa0315670:CDS	30.0%
TCATCTAGTAGGATATTTGA+CGG	+	chr2_4:12147102-12147121	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	12145725	12152144	12145725	ID=Msa0315670;Name=Msa0315670
chr2_4	mRNA	12145725	12152144	12145725	ID=Msa0315670-mRNA-1;Parent=Msa0315670;Name=Msa0315670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=81\|1\|1\|1\|1\|1\|10\|207\|1358
chr2_4	exon	12145725	12147047	12145725	ID=Msa0315670-mRNA-1:exon:4688;Parent=Msa0315670-mRNA-1
chr2_4	exon	12147713	12148582	12147713	ID=Msa0315670-mRNA-1:exon:4687;Parent=Msa0315670-mRNA-1
chr2_4	exon	12148809	12150431	12148809	ID=Msa0315670-mRNA-1:exon:4686;Parent=Msa0315670-mRNA-1
chr2_4	exon	12150567	12150626	12150567	ID=Msa0315670-mRNA-1:exon:4685;Parent=Msa0315670-mRNA-1
chr2_4	exon	12150732	12150810	12150732	ID=Msa0315670-mRNA-1:exon:4684;Parent=Msa0315670-mRNA-1
chr2_4	exon	12150899	12150960	12150899	ID=Msa0315670-mRNA-1:exon:4683;Parent=Msa0315670-mRNA-1
chr2_4	exon	12151224	12151299	12151224	ID=Msa0315670-mRNA-1:exon:4682;Parent=Msa0315670-mRNA-1
chr2_4	exon	12151624	12151676	12151624	ID=Msa0315670-mRNA-1:exon:4681;Parent=Msa0315670-mRNA-1
chr2_4	exon	12151842	12151931	12151842	ID=Msa0315670-mRNA-1:exon:4680;Parent=Msa0315670-mRNA-1
chr2_4	exon	12152016	12152144	12152016	ID=Msa0315670-mRNA-1:exon:4679;Parent=Msa0315670-mRNA-1
chr2_4	five_prime_UTR	12152064	12152144	12152064	ID=Msa0315670-mRNA-1:five_prime_utr;Parent=Msa0315670-mRNA-1
chr2_4	CDS	12152016	12152063	12152016	ID=Msa0315670-mRNA-1:cds;Parent=Msa0315670-mRNA-1
chr2_4	CDS	12151842	12151931	12151842	ID=Msa0315670-mRNA-1:cds;Parent=Msa0315670-mRNA-1
chr2_4	CDS	12151624	12151676	12151624	ID=Msa0315670-mRNA-1:cds;Parent=Msa0315670-mRNA-1
chr2_4	CDS	12151224	12151299	12151224	ID=Msa0315670-mRNA-1:cds;Parent=Msa0315670-mRNA-1
chr2_4	CDS	12150899	12150960	12150899	ID=Msa0315670-mRNA-1:cds;Parent=Msa0315670-mRNA-1
chr2_4	CDS	12150732	12150810	12150732	ID=Msa0315670-mRNA-1:cds;Parent=Msa0315670-mRNA-1
chr2_4	CDS	12150567	12150626	12150567	ID=Msa0315670-mRNA-1:cds;Parent=Msa0315670-mRNA-1
chr2_4	CDS	12148809	12150431	12148809	ID=Msa0315670-mRNA-1:cds;Parent=Msa0315670-mRNA-1
chr2_4	CDS	12147713	12148582	12147713	ID=Msa0315670-mRNA-1:cds;Parent=Msa0315670-mRNA-1
chr2_4	CDS	12145932	12147047	12145932	ID=Msa0315670-mRNA-1:cds;Parent=Msa0315670-mRNA-1
chr2_4	three_prime_UTR	12145725	12145931	12145725	ID=Msa0315670-mRNA-1:three_prime_utr;Parent=Msa0315670-mRNA-1

Gene Sequence

>Msa0315670

ATGAACCAGTACCACATCTACGAAGCCATTGGTCGCGGAAGATACTCGACTGTTTACAAAGGTAGAAAGAAGAAGACGATCGAGTATTTCGCAATCAAAAGCGTCGATAAATCTCAGAAGAACAAGGTTCTTCAAGAAGTTAGGATTCTTCACACTTTAGATCACCAAAATGTTCTCAAGTTTTATTCATGGTATGAAACGTCTGCTCACTTATGGTTGGTATTGGAGTATTGTGTTGGTGGGGATCTACTTTCTATATTACGGCAGGATAGTCAACTTCCTGAAGATTCTGTTAATGAACTTGCTTGTGACCTTGTCAGAGCTTTGCAGTATTTACATTCAAATGGAATAATTTATTGTGACCTGAAACCGTCAAATATCCTACTAGATGAAAATGGGCGTACAAAGCTCTGTGATTTCGGATTGGCCAGAAGGTTGAAAGAGATATCAAAAGTTCCTTCTTCCTCGTTGCCTCAAGCAAAACGTGGAACACCCTCTTACATGGCTCCGGAGCTTTTTGAAGATGGTGGAGTCCATTCTTATGCTTCTGATTTCTGGGCTCTAGGATGTGTACTGTATGAATGTTACACTGGGAGACCTCCTTTTGTGGGAAGAGAATTCACTCAGCTCGTAAAATCCATAATTTCAGACCCGACTCCACCTCTCCCTGGGAATCCAAGTCCACCTTTTGTCAATTTAATAAATTCTCTGTTAGTCAAAGATCCAGCTGAAAGAATACAGTGGCATGAGCTTTGTGGACATGCCTTTTGGAAAACTAAATTCACTCCAGTGTCTCTTCCTCCTCAACCTGCGTTTGCTGATATGACTGAGCTACATGCTAAACAATGCTTATCAGAACGTAATGGAGATAAGTCTTCTCATAACAGGACCCCTCCCAAATCTCGTGAAAAAGACGGGAAAGGGGCAAGAGCCATTGAGACACCAACAAGAGCAACACCAAATGGACAAAGAACTCAGACAAAGGGTTCTGGCAGAACAGTTGAGGCGAAGCAGAAGGATCCTTCCATTATTAAAAAAGGTTTGAATCTTTTGAGAATGTCAAGAATAGCAAAATCAAATTTACAAAAAGAAAATGAGAAAGAAAACTATCGACGTCCCTTGCCAAATGGCTCCGAGAAAGATGCCGATGTTAAAATTGAGAACACTGACATGGAACTTGATTTTAATGAGAATAATGAAGAGGACGCACTTGACGAAAATGATGGTTCTGAACATACACCTTCTGTGCCCAATGAGAAAATGGAGAGTAATTTTCAGAATCAGGGAAAAGCAGATGACACTGAAAATGATATACATCGGTTGGACACCCCATCTGTGACTAATCCCGCCTCAGATGATTCAAGGACGTTTGTTCATGAGTCAACTCCTGACCGTTCTGACATATCTGCTATTTCTCCAAGTGTCAGCCCTCTAGTGAAAAAACAGAGGCTTAAAGATGACTTAGGATCTGGTCTTGACTCTGATTCTTCAAGATCCTCTAACGACATCTCCCAGGTTATTTGGCATCCATCTGATCTCTCAGTCAGACCTGTAATGCCCAGCAGAAAAGTTGACAAATGCTCGGAAGTCATTCCTTCACTTCCTTTTGAGGCGTTGCAAGCACCTGAATTTGTCAAGATGCCTAAAGAGCAACTGGAGGCACTCCATAACCGAATTATAGCCATCTTGAATGGGAGTACTACCATTGGAGAGAAACAAAATGTGGTTAGGTACCTCGAGATGTTGAGCACTAATGCTGATGCAGCCAATATCTTGACCAATGGGCCAATAATGCTCATTCTCATAAAGTTGCTACGTCAATCCAAGGCATCGGCTTTACGCGTTCAACTTGCTTCGCTGATTGGTCTGTTGATTAGACACTCTACTTTTGTTGATGACAGTTTAGCTAATTCTGGAATTCTAGGTTCATTGACGGATGGTCTTAGGGATAGGCAAGAAAAAGTGAGGAGGTTTTCCATGGCTGCATTGGGTGAGTTGCTATTTTATATATCCACCCAAAGTGCAGACTCTAGGGATAACACTCCCCTTGAATCTCCATCAAAGGACAATAGAACCGCGCATGGCTGGCAGGTTCCAAATTCATTAATTTCCTTGGTATCATCGGTATTGAGGAAAGGTGAAGATGATATAACTCAATTGTATACATTGAGAACAATCGAGAATATTTGCAGTCAAGGAGGGGCCTGGGTGGGACGTTTGACGAGTCAAGATGTTATTAGTAATCTCTGCTATATCTATAGAGCGGCAGGGAAACTGGAAAGCATGAGGCTTACTGCAGGATCATGTTTGGTGCGCTTAGTTCGTTTTAATCCTCCTAGTATTCAGTCTGTTATAGAGAAGCTCTCATTCAAGGACCTAGCTTCTGCTCTTGTCAAAGGCAGTCCACGAGAGCAGCAAATCAGCTTAAATCTTCTTAACACGGCAATGCTTGGAAGTCACATGTTGACAAATGTTGGAAGATACCTTATGCAACTTGCAGAGGATAAGAATCTGATCCCAAGTCTTTTGGCTTTTGTTGAGCAGGGTAGTGAAGTTTTAAAAGGAAAGGCACTTGTCTTTGTGGCTCTCCTCTGCAAGCACGGTAGGAGATGGCTTCCACAGTTCTTTTGTAGCCATAAGTTACTTTCAGTGGTGGACAGGCTGGGAAAAGAGAAGGATGCCTTTGTGCGGCAGTGTTTAGATGCATTTCTACATATTGTGGCATCCACTATTCCTGGATTACTGGATATAATAACTGGGGATATCCAGCAAATGATGGGAGGAAGGCGCCATGGGCATATCTCTTCGCTTACCAGTAGATCTGCTCCAAAATCCAACATTCACTTGTTTCCTGTTGTCCTTCATCTTCTTGAAAGTTCAGCTTTTAAGCACAAAGTGGCGACACTTCCTGTTCTACGGCAGTTGGCAAATCTGATTAAACTTGCGGAGGCACCGTTTCAGGGAAGAGACGACTTCCAAATAACCCTTCTTCGAATTTTAGAGTCGCTCACGGAGGAATCTTCTGTGATCCTTGCAAATCCCGACATTTTCTTACGGGAAATCCTCCCTAGTTTGACAGTTCTCTATAAGGGTAACAAGGATGGTGATGCGAGATTTTTGTGCCTTAAAATCTTTTTCGATGTTATGATTATTCTCTTGAGTGAACCAATTGAAGAAGAGCAAAGATTGAACGACTTGAAATTCGTGTCAAATACACATTTTCTTCCTCTCTACCCGACCTTGATCGAAGATGAAGACCCTATTCCTATATTTGCACAGAAGCTTCTTGTCATGCTACTGGAGTTCAGTTTTATTTCAATTCCAGACATTCTACACCTGAAGACAATTTCACAATGTTTTGAGTTCTTGCTTGGTGATCTGTCAAATGCAAATGTGAATAATGTTAAGCTGTGTCTTGCTTTGGCTTCTGCCCCTGAGATGGAGTCCAAATTACTTTCCCAATTGAAAGTTGTTAGGAGGATCGGCAACTTCCTTGAGTTTGTATGTGCAAAGGGTATGGAAGATTTGCTGGAGCCAACTCTTGGGCTGTGCAGAGCCTTTCTAGCACGTTCAGTCAGCTGTACAAAAGGCTTCAGCTACACAACAGAGCCAACTCTCTTAGGCGACAGTCCTCCCGAGGTGAGTGGCGCTGTTGATCCGCAGCAATGCATAAGAGATATAACAGACTTTGGAAGCAATGTTGGTGTCTTTCTAGAGTTGAGTGGATCTAGAGAGACCAGTGTTGCTGATATAGCTTCTCAGTGTGTGGTTTTACTGCTTAAGGCTGCTCCTAGAGAAGCAACCACTGGTCTACTAACCAATCTCCCCAAGGTTACCGTGATCCTAGAATCCTGGAGTAAAGGCACCCCTCACTTAACAGTGCAGAGAATGCTTCATGCTTTAGGTTATGCTTGCAAGCAGTACTTATTGCATGCAATGATATTATCAATATCAATACCAGAGATTTCAAGAATTGAAGTGATAGTTACTGAACTCAAGAGTTCAAGTGTGCCTGCTTTAGCCAAAACTGCTGGATTGGCAGCCTTAGAGTTGCAGCGGCTACCTCGCTGCATTTGA

Protein sequence

>Msa0315670

MNQYHIYEAIGRGRYSTVYKGRKKKTIEYFAIKSVDKSQKNKVLQEVRILHTLDHQNVLKFYSWYETSAHLWLVLEYCVGGDLLSILRQDSQLPEDSVNELACDLVRALQYLHSNGIIYCDLKPSNILLDENGRTKLCDFGLARRLKEISKVPSSSLPQAKRGTPSYMAPELFEDGGVHSYASDFWALGCVLYECYTGRPPFVGREFTQLVKSIISDPTPPLPGNPSPPFVNLINSLLVKDPAERIQWHELCGHAFWKTKFTPVSLPPQPAFADMTELHAKQCLSERNGDKSSHNRTPPKSREKDGKGARAIETPTRATPNGQRTQTKGSGRTVEAKQKDPSIIKKGLNLLRMSRIAKSNLQKENEKENYRRPLPNGSEKDADVKIENTDMELDFNENNEEDALDENDGSEHTPSVPNEKMESNFQNQGKADDTENDIHRLDTPSVTNPASDDSRTFVHESTPDRSDISAISPSVSPLVKKQRLKDDLGSGLDSDSSRSSNDISQVIWHPSDLSVRPVMPSRKVDKCSEVIPSLPFEALQAPEFVKMPKEQLEALHNRIIAILNGSTTIGEKQNVVRYLEMLSTNADAANILTNGPIMLILIKLLRQSKASALRVQLASLIGLLIRHSTFVDDSLANSGILGSLTDGLRDRQEKVRRFSMAALGELLFYISTQSADSRDNTPLESPSKDNRTAHGWQVPNSLISLVSSVLRKGEDDITQLYTLRTIENICSQGGAWVGRLTSQDVISNLCYIYRAAGKLESMRLTAGSCLVRLVRFNPPSIQSVIEKLSFKDLASALVKGSPREQQISLNLLNTAMLGSHMLTNVGRYLMQLAEDKNLIPSLLAFVEQGSEVLKGKALVFVALLCKHGRRWLPQFFCSHKLLSVVDRLGKEKDAFVRQCLDAFLHIVASTIPGLLDIITGDIQQMMGGRRHGHISSLTSRSAPKSNIHLFPVVLHLLESSAFKHKVATLPVLRQLANLIKLAEAPFQGRDDFQITLLRILESLTEESSVILANPDIFLREILPSLTVLYKGNKDGDARFLCLKIFFDVMIILLSEPIEEEQRLNDLKFVSNTHFLPLYPTLIEDEDPIPIFAQKLLVMLLEFSFISIPDILHLKTISQCFEFLLGDLSNANVNNVKLCLALASAPEMESKLLSQLKVVRRIGNFLEFVCAKGMEDLLEPTLGLCRAFLARSVSCTKGFSYTTEPTLLGDSPPEVSGAVDPQQCIRDITDFGSNVGVFLELSGSRETSVADIASQCVVLLLKAAPREATTGLLTNLPKVTVILESWSKGTPHLTVQRMLHALGYACKQYLLHAMILSISIPEISRIEVIVTELKSSSVPALAKTAGLAALELQRLPRCI*