Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316480 | XP_013462873.1 | 96.066 | 305 | 12 | 0 | 16 | 320 | 16 | 320 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0238720 | Msa0316480 | 0.845623 | 3.619264e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316480 | MtrunA17_Chr2g0288891 | 96.066 | 305 | 12 | 0 | 16 | 320 | 16 | 320 | 0.0 | 596 |
| Msa0316480 | MtrunA17_Chr4g0075211 | 77.850 | 307 | 66 | 2 | 15 | 320 | 29 | 334 | 0.0 | 518 |
| Msa0316480 | MtrunA17_Chr4g0069121 | 33.466 | 251 | 138 | 11 | 22 | 262 | 32 | 263 | 1.63e-28 | 111 |
| Msa0316480 | MtrunA17_Chr8g0381971 | 27.526 | 287 | 160 | 13 | 4 | 269 | 10 | 269 | 1.33e-21 | 92.8 |
| Msa0316480 | MtrunA17_Chr4g0058901 | 26.923 | 286 | 175 | 11 | 4 | 268 | 8 | 280 | 8.16e-21 | 90.9 |
| Msa0316480 | MtrunA17_Chr5g0415341 | 27.957 | 279 | 162 | 11 | 1 | 262 | 10 | 266 | 5.18e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316480 | AT1G11915.1 | 62.848 | 323 | 114 | 5 | 3 | 320 | 8 | 329 | 2.02e-136 | 390 |
| Msa0316480 | AT3G17350.2 | 32.319 | 263 | 149 | 11 | 19 | 267 | 26 | 273 | 1.18e-24 | 101 |
| Msa0316480 | AT3G17350.1 | 32.540 | 252 | 143 | 10 | 19 | 258 | 26 | 262 | 1.62e-24 | 101 |
| Msa0316480 | AT5G50290.1 | 27.941 | 272 | 168 | 8 | 8 | 262 | 6 | 266 | 2.81e-20 | 89.7 |
| Msa0316480 | AT1G10380.2 | 28.235 | 255 | 156 | 10 | 23 | 262 | 28 | 270 | 3.58e-16 | 78.2 |
| Msa0316480 | AT1G10380.1 | 28.235 | 255 | 156 | 10 | 23 | 262 | 28 | 270 | 3.92e-16 | 78.2 |
Find 72 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATAGATTCACTTGCTTT+TGG | 0.214999 | 2_4:-13623157 | None:intergenic |
| TATGATCAAGTACCTGAATA+TGG | 0.236309 | 2_4:+13623247 | Msa0316480:CDS |
| TTGGAATTGGAGCTGGTATT+TGG | 0.243382 | 2_4:+13624008 | Msa0316480:CDS |
| CTAGTTATGCTAGTGTTTAT+TGG | 0.264957 | 2_4:+13623200 | Msa0316480:CDS |
| GTGCTAGTGTCTAAACTAAA+TGG | 0.287964 | 2_4:-13622935 | None:intergenic |
| CATCCATCATCAATGCTAAA+TGG | 0.290423 | 2_4:-13622734 | None:intergenic |
| AAGTACCTGAATATGGGATT+AGG | 0.329695 | 2_4:+13623254 | Msa0316480:CDS |
| TTCTCAGCTGCAGGGGCAAT+TGG | 0.337882 | 2_4:+13623989 | Msa0316480:CDS |
| AAGAAATTGCACAGCACAAT+AGG | 0.351853 | 2_4:+13623830 | Msa0316480:CDS |
| GATAGAATGTGTCTATAGTA+TGG | 0.357039 | 2_4:-13622764 | None:intergenic |
| AGAATGTGGCATAGAATTCT+TGG | 0.373172 | 2_4:+13624375 | Msa0316480:three_prime_UTR |
| AGTGTTTATTGGAGGGATAT+TGG | 0.378579 | 2_4:+13623211 | Msa0316480:CDS |
| TGTTCACAAAACATAGGCTT+TGG | 0.380089 | 2_4:-13623028 | None:intergenic |
| TTCTGTTACCTGCGATTACA+TGG | 0.382922 | 2_4:-13623858 | None:intergenic |
| CAAGATGAATCACAATGTTC+AGG | 0.392043 | 2_4:-13623055 | None:intergenic |
| TCAACCCTAATCCCATATTC+AGG | 0.395794 | 2_4:-13623259 | None:intergenic |
| CATAGCTTATGTTATGAACT+TGG | 0.399689 | 2_4:-13622838 | None:intergenic |
| GCTGCAGGGGCAATTGGAAT+TGG | 0.402123 | 2_4:+13623995 | Msa0316480:CDS |
| TTAGAATAGTCTATTATCAT+TGG | 0.412158 | 2_4:-13624080 | None:intergenic |
| CTCGAACTCAGAACACCTTC+CGG | 0.413555 | 2_4:+13622809 | Msa0316480:CDS |
| TTGTGTATTAATGTAAGTTA+AGG | 0.420734 | 2_4:+13624199 | Msa0316480:three_prime_UTR |
| AGTACCTGAATATGGGATTA+GGG | 0.421546 | 2_4:+13623255 | Msa0316480:CDS |
| TGAAGACAACGAGTAGTAAC+AGG | 0.427516 | 2_4:-13623292 | None:intergenic |
| TACTCGTTGTCTTCAGTGTC+AGG | 0.427643 | 2_4:+13623300 | Msa0316480:CDS |
| TATTCAGGTACTTGATCATA+AGG | 0.447126 | 2_4:-13623244 | None:intergenic |
| TATCCATTTAGCATTGATGA+TGG | 0.462210 | 2_4:+13622731 | Msa0316480:CDS |
| TCCTCACATTTCCACATGAA+TGG | 0.463278 | 2_4:-13622887 | None:intergenic |
| GTTACAGCATTCTCAGCTGC+AGG | 0.468617 | 2_4:+13623980 | Msa0316480:CDS |
| ATGATCAAGTACCTGAATAT+GGG | 0.489019 | 2_4:+13623248 | Msa0316480:CDS |
| TAAATAAACTACAATAGCTA+AGG | 0.489416 | 2_4:-13624158 | None:intergenic |
| GTTATGCTAGTGTTTATTGG+AGG | 0.492582 | 2_4:+13623203 | Msa0316480:CDS |
| GGAAAATGTTCACAAAACAT+AGG | 0.507873 | 2_4:-13623034 | None:intergenic |
| TGACTAGGAGTAATGAGAGA+AGG | 0.513519 | 2_4:-13622652 | None:intergenic |
| ATTAATGTAAGTTAAGGTGT+TGG | 0.514314 | 2_4:+13624205 | Msa0316480:three_prime_UTR |
| GTTATGAACTTGGTATCGAC+CGG | 0.521862 | 2_4:-13622828 | None:intergenic |
| CTAGGAGTAATGAGAGAAGG+AGG | 0.524002 | 2_4:-13622649 | None:intergenic |
| GGTACTTGATCATAAGGCTC+AGG | 0.533579 | 2_4:-13623238 | None:intergenic |
| TACTTATGTAGACATTTACC+AGG | 0.534763 | 2_4:+13623091 | Msa0316480:CDS |
| TTATGCTAGTGTTTATTGGA+GGG | 0.537025 | 2_4:+13623204 | Msa0316480:CDS |
| CAAAAGCAAGTGAATCTATG+AGG | 0.538070 | 2_4:+13623158 | Msa0316480:CDS |
| GTATGCAGAACTTCTTGTGC+TGG | 0.539419 | 2_4:+13622695 | Msa0316480:CDS |
| GTTTGAACTCCACATGTGAC+TGG | 0.542667 | 2_4:-13624058 | None:intergenic |
| TTTAGCATTGATGATGGATG+TGG | 0.543288 | 2_4:+13622737 | Msa0316480:CDS |
| AAATAAACTACAATAGCTAA+GGG | 0.551100 | 2_4:-13624157 | None:intergenic |
| TCAGTGTCAGGACACAATGA+AGG | 0.554263 | 2_4:+13623312 | Msa0316480:CDS |
| AATAAACTACAATAGCTAAG+GGG | 0.556296 | 2_4:-13624156 | None:intergenic |
| AACTCCACTACACATTGTAA+AGG | 0.560482 | 2_4:+13623397 | Msa0316480:CDS |
| GGGGCAATTGGAATTGGAGC+TGG | 0.569061 | 2_4:+13624001 | Msa0316480:CDS |
| ATAAACTACAATAGCTAAGG+GGG | 0.570887 | 2_4:-13624155 | None:intergenic |
| AGGAAGGTCCATGTAATCGC+AGG | 0.573932 | 2_4:+13623850 | Msa0316480:CDS |
| TTACAGCATTCTCAGCTGCA+GGG | 0.578537 | 2_4:+13623981 | Msa0316480:CDS |
| CATACCTTTACAATGTGTAG+TGG | 0.589945 | 2_4:-13623401 | None:intergenic |
| CAGGACACAATGAAGGGTGG+TGG | 0.591439 | 2_4:+13623319 | Msa0316480:CDS |
| ATGAAATGATTATAAGAATG+TGG | 0.594732 | 2_4:+13624361 | Msa0316480:three_prime_UTR |
| ATGAAGGGTGGTGGAACTTG+TGG | 0.595707 | 2_4:+13623328 | Msa0316480:CDS |
| AAACTACAATAGCTAAGGGG+GGG | 0.616879 | 2_4:-13624153 | None:intergenic |
| GGTGACAACAATGTGAGGAT+CGG | 0.620294 | 2_4:-13622861 | None:intergenic |
| CAGTGTCAGGACACAATGAA+GGG | 0.624151 | 2_4:+13623313 | Msa0316480:CDS |
| TTGTCACCGATCCATTCATG+TGG | 0.627050 | 2_4:+13622876 | Msa0316480:CDS |
| ACATTTCCACATGAATGGAT+CGG | 0.629048 | 2_4:-13622882 | None:intergenic |
| TCTAAACTAAATGGTCGCGT+AGG | 0.632230 | 2_4:-13622926 | None:intergenic |
| TAAACTACAATAGCTAAGGG+GGG | 0.638175 | 2_4:-13624154 | None:intergenic |
| TACAGCATTCTCAGCTGCAG+GGG | 0.645559 | 2_4:+13623982 | Msa0316480:CDS |
| AATTGCACAGCACAATAGGA+AGG | 0.647476 | 2_4:+13623834 | Msa0316480:CDS |
| TGAACTTGGTATCGACCGGA+AGG | 0.647859 | 2_4:-13622824 | None:intergenic |
| GCTACTGCACCAGTCACATG+TGG | 0.647888 | 2_4:+13624049 | Msa0316480:CDS |
| TTCATGTGGAAATGTGAGGA+TGG | 0.661162 | 2_4:+13622890 | Msa0316480:CDS |
| GGATCGGTGACAACAATGTG+AGG | 0.665381 | 2_4:-13622866 | None:intergenic |
| TGGAACTTGTGGATTTGATG+CGG | 0.670522 | 2_4:+13623339 | Msa0316480:CDS |
| TCCATTCATGTGGAAATGTG+AGG | 0.693776 | 2_4:+13622886 | Msa0316480:CDS |
| TGTCAGGACACAATGAAGGG+TGG | 0.712905 | 2_4:+13623316 | Msa0316480:CDS |
| ACTTATGTAGACATTTACCA+GGG | 0.719135 | 2_4:+13623092 | Msa0316480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACACATAATTCAATAGAATA+GGG | - | chr2_4:13623439-13623458 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGGTACAAAAGA+GGG | - | chr2_4:13623697-13623716 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGGTACAAAAG+AGG | - | chr2_4:13623698-13623717 | None:intergenic | 20.0% |
| !!! | TGAACGACTTTTTTTTTTTT+TGG | - | chr2_4:13623709-13623728 | None:intergenic | 20.0% |
| !! | TACTGAAATAACAAAAACTT+AGG | + | chr2_4:13623910-13623929 | Msa0316480:intron | 20.0% |
| !! | TTAGAATAGTCTATTATCAT+TGG | - | chr2_4:13624083-13624102 | None:intergenic | 20.0% |
| !! | AAATAAACTACAATAGCTAA+GGG | - | chr2_4:13624160-13624179 | None:intergenic | 20.0% |
| !! | TAAATAAACTACAATAGCTA+AGG | - | chr2_4:13624161-13624180 | None:intergenic | 20.0% |
| !! | TTGTGTATTAATGTAAGTTA+AGG | + | chr2_4:13624199-13624218 | Msa0316480:three_prime_UTR | 20.0% |
| !! | ATGAAATGATTATAAGAATG+TGG | + | chr2_4:13624361-13624380 | Msa0316480:three_prime_UTR | 20.0% |
| !! | ACACATAATTCAATAGAATA+GGG | - | chr2_4:13623439-13623458 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGGTACAAAAGA+GGG | - | chr2_4:13623697-13623716 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGGTACAAAAG+AGG | - | chr2_4:13623698-13623717 | None:intergenic | 20.0% |
| !!! | TGAACGACTTTTTTTTTTTT+TGG | - | chr2_4:13623709-13623728 | None:intergenic | 20.0% |
| !! | TACTGAAATAACAAAAACTT+AGG | + | chr2_4:13623910-13623929 | Msa0316480:intron | 20.0% |
| !! | TTAGAATAGTCTATTATCAT+TGG | - | chr2_4:13624083-13624102 | None:intergenic | 20.0% |
| !! | AAATAAACTACAATAGCTAA+GGG | - | chr2_4:13624160-13624179 | None:intergenic | 20.0% |
| !! | TAAATAAACTACAATAGCTA+AGG | - | chr2_4:13624161-13624180 | None:intergenic | 20.0% |
| !! | TTGTGTATTAATGTAAGTTA+AGG | + | chr2_4:13624199-13624218 | Msa0316480:three_prime_UTR | 20.0% |
| !! | ATGAAATGATTATAAGAATG+TGG | + | chr2_4:13624361-13624380 | Msa0316480:three_prime_UTR | 20.0% |
| !!! | AAGTTTTTTGTGTTTGTGTA+AGG | + | chr2_4:13623369-13623388 | Msa0316480:CDS | 25.0% |
| ! | GACACATAATTCAATAGAAT+AGG | - | chr2_4:13623440-13623459 | None:intergenic | 25.0% |
| !! | AAGGGAACAAATATTTTTCA+TGG | - | chr2_4:13623462-13623481 | None:intergenic | 25.0% |
| !!! | TTTGAGTAATTTTCAAGTAC+CGG | + | chr2_4:13623569-13623588 | Msa0316480:intron | 25.0% |
| ! | AAAAAAAAAAAGTCGTTCAC+AGG | + | chr2_4:13623710-13623729 | Msa0316480:intron | 25.0% |
| ! | ATATTCTCTCATTCAACTTA+AGG | - | chr2_4:13623778-13623797 | None:intergenic | 25.0% |
| ! | TTGATTGTCTAATGTTTGTT+TGG | + | chr2_4:13623801-13623820 | Msa0316480:intron | 25.0% |
| ! | AATAAACTACAATAGCTAAG+GGG | - | chr2_4:13624159-13624178 | None:intergenic | 25.0% |
| ! | ATTAATGTAAGTTAAGGTGT+TGG | + | chr2_4:13624205-13624224 | Msa0316480:three_prime_UTR | 25.0% |
| !! | TGTATTTAAGTCTGAGTTTT+TGG | - | chr2_4:13624328-13624347 | None:intergenic | 25.0% |
| !!! | AAGTTTTTTGTGTTTGTGTA+AGG | + | chr2_4:13623369-13623388 | Msa0316480:CDS | 25.0% |
| ! | GACACATAATTCAATAGAAT+AGG | - | chr2_4:13623440-13623459 | None:intergenic | 25.0% |
| !! | AAGGGAACAAATATTTTTCA+TGG | - | chr2_4:13623462-13623481 | None:intergenic | 25.0% |
| !!! | TTTGAGTAATTTTCAAGTAC+CGG | + | chr2_4:13623569-13623588 | Msa0316480:intron | 25.0% |
| ! | AAAAAAAAAAAGTCGTTCAC+AGG | + | chr2_4:13623710-13623729 | Msa0316480:intron | 25.0% |
| ! | ATATTCTCTCATTCAACTTA+AGG | - | chr2_4:13623778-13623797 | None:intergenic | 25.0% |
| ! | TTGATTGTCTAATGTTTGTT+TGG | + | chr2_4:13623801-13623820 | Msa0316480:intron | 25.0% |
| ! | AATAAACTACAATAGCTAAG+GGG | - | chr2_4:13624159-13624178 | None:intergenic | 25.0% |
| ! | ATTAATGTAAGTTAAGGTGT+TGG | + | chr2_4:13624205-13624224 | Msa0316480:three_prime_UTR | 25.0% |
| !! | TGTATTTAAGTCTGAGTTTT+TGG | - | chr2_4:13624328-13624347 | None:intergenic | 25.0% |
| !! | ATTGAGATTTTGTTGTGACT+AGG | - | chr2_4:13622670-13622689 | None:intergenic | 30.0% |
| !! | TATCCATTTAGCATTGATGA+TGG | + | chr2_4:13622731-13622750 | Msa0316480:CDS | 30.0% |
| GATAGAATGTGTCTATAGTA+TGG | - | chr2_4:13622767-13622786 | None:intergenic | 30.0% | |
| !!! | TTCGAGTTTTTTTTCTGAGT+CGG | - | chr2_4:13622795-13622814 | None:intergenic | 30.0% |
| CATAGCTTATGTTATGAACT+TGG | - | chr2_4:13622841-13622860 | None:intergenic | 30.0% | |
| GGAAAATGTTCACAAAACAT+AGG | - | chr2_4:13623037-13623056 | None:intergenic | 30.0% | |
| TACTTATGTAGACATTTACC+AGG | + | chr2_4:13623091-13623110 | Msa0316480:CDS | 30.0% | |
| ACTTATGTAGACATTTACCA+GGG | + | chr2_4:13623092-13623111 | Msa0316480:CDS | 30.0% | |
| CTAGTTATGCTAGTGTTTAT+TGG | + | chr2_4:13623200-13623219 | Msa0316480:CDS | 30.0% | |
| TTATGCTAGTGTTTATTGGA+GGG | + | chr2_4:13623204-13623223 | Msa0316480:CDS | 30.0% | |
| TATTCAGGTACTTGATCATA+AGG | - | chr2_4:13623247-13623266 | None:intergenic | 30.0% | |
| TATGATCAAGTACCTGAATA+TGG | + | chr2_4:13623247-13623266 | Msa0316480:CDS | 30.0% | |
| ATGATCAAGTACCTGAATAT+GGG | + | chr2_4:13623248-13623267 | Msa0316480:CDS | 30.0% | |
| ! | TTTTTGTGTTTGTGTAAGGA+TGG | + | chr2_4:13623373-13623392 | Msa0316480:CDS | 30.0% |
| ! | ATGTACTAGTTTCGAGTAAA+GGG | - | chr2_4:13623480-13623499 | None:intergenic | 30.0% |
| ! | AATGTACTAGTTTCGAGTAA+AGG | - | chr2_4:13623481-13623500 | None:intergenic | 30.0% |
| ! | TCTCTAGAAATTAAAGCTCA+TGG | - | chr2_4:13623542-13623561 | None:intergenic | 30.0% |
| TACCTACAATAGTGTTATGT+TGG | - | chr2_4:13623623-13623642 | None:intergenic | 30.0% | |
| !!! | TAGTCATTGTTGTTTTGTCT+TGG | + | chr2_4:13623938-13623957 | Msa0316480:intron | 30.0% |
| ATAAACTACAATAGCTAAGG+GGG | - | chr2_4:13624158-13624177 | None:intergenic | 30.0% | |
| !! | ATTGAGATTTTGTTGTGACT+AGG | - | chr2_4:13622670-13622689 | None:intergenic | 30.0% |
| !! | TATCCATTTAGCATTGATGA+TGG | + | chr2_4:13622731-13622750 | Msa0316480:CDS | 30.0% |
| GATAGAATGTGTCTATAGTA+TGG | - | chr2_4:13622767-13622786 | None:intergenic | 30.0% | |
| !!! | TTCGAGTTTTTTTTCTGAGT+CGG | - | chr2_4:13622795-13622814 | None:intergenic | 30.0% |
| CATAGCTTATGTTATGAACT+TGG | - | chr2_4:13622841-13622860 | None:intergenic | 30.0% | |
| GGAAAATGTTCACAAAACAT+AGG | - | chr2_4:13623037-13623056 | None:intergenic | 30.0% | |
| TACTTATGTAGACATTTACC+AGG | + | chr2_4:13623091-13623110 | Msa0316480:CDS | 30.0% | |
| ACTTATGTAGACATTTACCA+GGG | + | chr2_4:13623092-13623111 | Msa0316480:CDS | 30.0% | |
| CTAGTTATGCTAGTGTTTAT+TGG | + | chr2_4:13623200-13623219 | Msa0316480:CDS | 30.0% | |
| TTATGCTAGTGTTTATTGGA+GGG | + | chr2_4:13623204-13623223 | Msa0316480:CDS | 30.0% | |
| TATTCAGGTACTTGATCATA+AGG | - | chr2_4:13623247-13623266 | None:intergenic | 30.0% | |
| TATGATCAAGTACCTGAATA+TGG | + | chr2_4:13623247-13623266 | Msa0316480:CDS | 30.0% | |
| ATGATCAAGTACCTGAATAT+GGG | + | chr2_4:13623248-13623267 | Msa0316480:CDS | 30.0% | |
| ! | TTTTTGTGTTTGTGTAAGGA+TGG | + | chr2_4:13623373-13623392 | Msa0316480:CDS | 30.0% |
| ! | ATGTACTAGTTTCGAGTAAA+GGG | - | chr2_4:13623480-13623499 | None:intergenic | 30.0% |
| ! | AATGTACTAGTTTCGAGTAA+AGG | - | chr2_4:13623481-13623500 | None:intergenic | 30.0% |
| ! | TCTCTAGAAATTAAAGCTCA+TGG | - | chr2_4:13623542-13623561 | None:intergenic | 30.0% |
| TACCTACAATAGTGTTATGT+TGG | - | chr2_4:13623623-13623642 | None:intergenic | 30.0% | |
| !!! | TAGTCATTGTTGTTTTGTCT+TGG | + | chr2_4:13623938-13623957 | Msa0316480:intron | 30.0% |
| ATAAACTACAATAGCTAAGG+GGG | - | chr2_4:13624158-13624177 | None:intergenic | 30.0% | |
| CATCCATCATCAATGCTAAA+TGG | - | chr2_4:13622737-13622756 | None:intergenic | 35.0% | |
| !! | TTTAGCATTGATGATGGATG+TGG | + | chr2_4:13622737-13622756 | Msa0316480:CDS | 35.0% |
| ACATTTCCACATGAATGGAT+CGG | - | chr2_4:13622885-13622904 | None:intergenic | 35.0% | |
| GTGCTAGTGTCTAAACTAAA+TGG | - | chr2_4:13622938-13622957 | None:intergenic | 35.0% | |
| TGTTCACAAAACATAGGCTT+TGG | - | chr2_4:13623031-13623050 | None:intergenic | 35.0% | |
| CAAGATGAATCACAATGTTC+AGG | - | chr2_4:13623058-13623077 | None:intergenic | 35.0% | |
| TTAAGAGAAAAAGAACACCC+TGG | - | chr2_4:13623112-13623131 | None:intergenic | 35.0% | |
| ! | CTCATAGATTCACTTGCTTT+TGG | - | chr2_4:13623160-13623179 | None:intergenic | 35.0% |
| CAAAAGCAAGTGAATCTATG+AGG | + | chr2_4:13623158-13623177 | Msa0316480:CDS | 35.0% | |
| GTTATGCTAGTGTTTATTGG+AGG | + | chr2_4:13623203-13623222 | Msa0316480:CDS | 35.0% | |
| AGTGTTTATTGGAGGGATAT+TGG | + | chr2_4:13623211-13623230 | Msa0316480:CDS | 35.0% | |
| AAGTACCTGAATATGGGATT+AGG | + | chr2_4:13623254-13623273 | Msa0316480:CDS | 35.0% | |
| AGTACCTGAATATGGGATTA+GGG | + | chr2_4:13623255-13623274 | Msa0316480:CDS | 35.0% | |
| AACTCCACTACACATTGTAA+AGG | + | chr2_4:13623397-13623416 | Msa0316480:CDS | 35.0% | |
| CATACCTTTACAATGTGTAG+TGG | - | chr2_4:13623404-13623423 | None:intergenic | 35.0% | |
| ! | GAGCTTTAATTTCTAGAGAG+CGG | + | chr2_4:13623543-13623562 | Msa0316480:intron | 35.0% |
| GTCCAACATAACACTATTGT+AGG | + | chr2_4:13623618-13623637 | Msa0316480:intron | 35.0% | |
| ACACAAATAAAGTCGTTCAC+AGG | + | chr2_4:13623666-13623685 | Msa0316480:intron | 35.0% | |
| AAGAAATTGCACAGCACAAT+AGG | + | chr2_4:13623830-13623849 | Msa0316480:CDS | 35.0% | |
| !! | GTTGTTTTGTCTTGGAATTG+TGG | + | chr2_4:13623946-13623965 | Msa0316480:intron | 35.0% |
| TAAACTACAATAGCTAAGGG+GGG | - | chr2_4:13624157-13624176 | None:intergenic | 35.0% | |
| ! | GCTCAATTCATTTTCACTGT+AGG | + | chr2_4:13624267-13624286 | Msa0316480:three_prime_UTR | 35.0% |
| AGAATGTGGCATAGAATTCT+TGG | + | chr2_4:13624375-13624394 | Msa0316480:three_prime_UTR | 35.0% | |
| CATCCATCATCAATGCTAAA+TGG | - | chr2_4:13622737-13622756 | None:intergenic | 35.0% | |
| !! | TTTAGCATTGATGATGGATG+TGG | + | chr2_4:13622737-13622756 | Msa0316480:CDS | 35.0% |
| ACATTTCCACATGAATGGAT+CGG | - | chr2_4:13622885-13622904 | None:intergenic | 35.0% | |
| GTGCTAGTGTCTAAACTAAA+TGG | - | chr2_4:13622938-13622957 | None:intergenic | 35.0% | |
| TGTTCACAAAACATAGGCTT+TGG | - | chr2_4:13623031-13623050 | None:intergenic | 35.0% | |
| CAAGATGAATCACAATGTTC+AGG | - | chr2_4:13623058-13623077 | None:intergenic | 35.0% | |
| TTAAGAGAAAAAGAACACCC+TGG | - | chr2_4:13623112-13623131 | None:intergenic | 35.0% | |
| ! | CTCATAGATTCACTTGCTTT+TGG | - | chr2_4:13623160-13623179 | None:intergenic | 35.0% |
| CAAAAGCAAGTGAATCTATG+AGG | + | chr2_4:13623158-13623177 | Msa0316480:CDS | 35.0% | |
| GTTATGCTAGTGTTTATTGG+AGG | + | chr2_4:13623203-13623222 | Msa0316480:CDS | 35.0% | |
| AGTGTTTATTGGAGGGATAT+TGG | + | chr2_4:13623211-13623230 | Msa0316480:CDS | 35.0% | |
| AAGTACCTGAATATGGGATT+AGG | + | chr2_4:13623254-13623273 | Msa0316480:CDS | 35.0% | |
| AGTACCTGAATATGGGATTA+GGG | + | chr2_4:13623255-13623274 | Msa0316480:CDS | 35.0% | |
| AACTCCACTACACATTGTAA+AGG | + | chr2_4:13623397-13623416 | Msa0316480:CDS | 35.0% | |
| CATACCTTTACAATGTGTAG+TGG | - | chr2_4:13623404-13623423 | None:intergenic | 35.0% | |
| ! | GAGCTTTAATTTCTAGAGAG+CGG | + | chr2_4:13623543-13623562 | Msa0316480:intron | 35.0% |
| GTCCAACATAACACTATTGT+AGG | + | chr2_4:13623618-13623637 | Msa0316480:intron | 35.0% | |
| ACACAAATAAAGTCGTTCAC+AGG | + | chr2_4:13623666-13623685 | Msa0316480:intron | 35.0% | |
| AAGAAATTGCACAGCACAAT+AGG | + | chr2_4:13623830-13623849 | Msa0316480:CDS | 35.0% | |
| !! | GTTGTTTTGTCTTGGAATTG+TGG | + | chr2_4:13623946-13623965 | Msa0316480:intron | 35.0% |
| TAAACTACAATAGCTAAGGG+GGG | - | chr2_4:13624157-13624176 | None:intergenic | 35.0% | |
| ! | GCTCAATTCATTTTCACTGT+AGG | + | chr2_4:13624267-13624286 | Msa0316480:three_prime_UTR | 35.0% |
| AGAATGTGGCATAGAATTCT+TGG | + | chr2_4:13624375-13624394 | Msa0316480:three_prime_UTR | 35.0% | |
| TGACTAGGAGTAATGAGAGA+AGG | - | chr2_4:13622655-13622674 | None:intergenic | 40.0% | |
| !! | GTTATGAACTTGGTATCGAC+CGG | - | chr2_4:13622831-13622850 | None:intergenic | 40.0% |
| TCCATTCATGTGGAAATGTG+AGG | + | chr2_4:13622886-13622905 | Msa0316480:CDS | 40.0% | |
| TCCTCACATTTCCACATGAA+TGG | - | chr2_4:13622890-13622909 | None:intergenic | 40.0% | |
| TTCATGTGGAAATGTGAGGA+TGG | + | chr2_4:13622890-13622909 | Msa0316480:CDS | 40.0% | |
| TCTAAACTAAATGGTCGCGT+AGG | - | chr2_4:13622929-13622948 | None:intergenic | 40.0% | |
| TCAACCCTAATCCCATATTC+AGG | - | chr2_4:13623262-13623281 | None:intergenic | 40.0% | |
| TGAAGACAACGAGTAGTAAC+AGG | - | chr2_4:13623295-13623314 | None:intergenic | 40.0% | |
| TGGAACTTGTGGATTTGATG+CGG | + | chr2_4:13623339-13623358 | Msa0316480:CDS | 40.0% | |
| ATACGTGGTCTATTGTTGAC+CGG | - | chr2_4:13623591-13623610 | None:intergenic | 40.0% | |
| CAATAGACCACGTATCAAGA+CGG | + | chr2_4:13623596-13623615 | Msa0316480:intron | 40.0% | |
| AATTGCACAGCACAATAGGA+AGG | + | chr2_4:13623834-13623853 | Msa0316480:CDS | 40.0% | |
| TTCTGTTACCTGCGATTACA+TGG | - | chr2_4:13623861-13623880 | None:intergenic | 40.0% | |
| TGTCTTGGAATTGTGGTTTC+AGG | + | chr2_4:13623953-13623972 | Msa0316480:intron | 40.0% | |
| GTCTTGGAATTGTGGTTTCA+GGG | + | chr2_4:13623954-13623973 | Msa0316480:intron | 40.0% | |
| TTGGAATTGGAGCTGGTATT+TGG | + | chr2_4:13624008-13624027 | Msa0316480:CDS | 40.0% | |
| AAACTACAATAGCTAAGGGG+GGG | - | chr2_4:13624156-13624175 | None:intergenic | 40.0% | |
| TGAGAAAAATCGCAGAGGAT+TGG | - | chr2_4:13624305-13624324 | None:intergenic | 40.0% | |
| TTTGGTGAGAAAAATCGCAG+AGG | - | chr2_4:13624310-13624329 | None:intergenic | 40.0% | |
| TGACTAGGAGTAATGAGAGA+AGG | - | chr2_4:13622655-13622674 | None:intergenic | 40.0% | |
| !! | GTTATGAACTTGGTATCGAC+CGG | - | chr2_4:13622831-13622850 | None:intergenic | 40.0% |
| TCCATTCATGTGGAAATGTG+AGG | + | chr2_4:13622886-13622905 | Msa0316480:CDS | 40.0% | |
| TCCTCACATTTCCACATGAA+TGG | - | chr2_4:13622890-13622909 | None:intergenic | 40.0% | |
| TTCATGTGGAAATGTGAGGA+TGG | + | chr2_4:13622890-13622909 | Msa0316480:CDS | 40.0% | |
| TCTAAACTAAATGGTCGCGT+AGG | - | chr2_4:13622929-13622948 | None:intergenic | 40.0% | |
| TCAACCCTAATCCCATATTC+AGG | - | chr2_4:13623262-13623281 | None:intergenic | 40.0% | |
| TGAAGACAACGAGTAGTAAC+AGG | - | chr2_4:13623295-13623314 | None:intergenic | 40.0% | |
| TGGAACTTGTGGATTTGATG+CGG | + | chr2_4:13623339-13623358 | Msa0316480:CDS | 40.0% | |
| ATACGTGGTCTATTGTTGAC+CGG | - | chr2_4:13623591-13623610 | None:intergenic | 40.0% | |
| CAATAGACCACGTATCAAGA+CGG | + | chr2_4:13623596-13623615 | Msa0316480:intron | 40.0% | |
| AATTGCACAGCACAATAGGA+AGG | + | chr2_4:13623834-13623853 | Msa0316480:CDS | 40.0% | |
| TTCTGTTACCTGCGATTACA+TGG | - | chr2_4:13623861-13623880 | None:intergenic | 40.0% | |
| TGTCTTGGAATTGTGGTTTC+AGG | + | chr2_4:13623953-13623972 | Msa0316480:intron | 40.0% | |
| GTCTTGGAATTGTGGTTTCA+GGG | + | chr2_4:13623954-13623973 | Msa0316480:intron | 40.0% | |
| TTGGAATTGGAGCTGGTATT+TGG | + | chr2_4:13624008-13624027 | Msa0316480:CDS | 40.0% | |
| AAACTACAATAGCTAAGGGG+GGG | - | chr2_4:13624156-13624175 | None:intergenic | 40.0% | |
| TGAGAAAAATCGCAGAGGAT+TGG | - | chr2_4:13624305-13624324 | None:intergenic | 40.0% | |
| TTTGGTGAGAAAAATCGCAG+AGG | - | chr2_4:13624310-13624329 | None:intergenic | 40.0% | |
| CTAGGAGTAATGAGAGAAGG+AGG | - | chr2_4:13622652-13622671 | None:intergenic | 45.0% | |
| GTATGCAGAACTTCTTGTGC+TGG | + | chr2_4:13622695-13622714 | Msa0316480:CDS | 45.0% | |
| GGTGACAACAATGTGAGGAT+CGG | - | chr2_4:13622864-13622883 | None:intergenic | 45.0% | |
| TTGTCACCGATCCATTCATG+TGG | + | chr2_4:13622876-13622895 | Msa0316480:CDS | 45.0% | |
| GGTACTTGATCATAAGGCTC+AGG | - | chr2_4:13623241-13623260 | None:intergenic | 45.0% | |
| TACTCGTTGTCTTCAGTGTC+AGG | + | chr2_4:13623300-13623319 | Msa0316480:CDS | 45.0% | |
| TCAGTGTCAGGACACAATGA+AGG | + | chr2_4:13623312-13623331 | Msa0316480:CDS | 45.0% | |
| CAGTGTCAGGACACAATGAA+GGG | + | chr2_4:13623313-13623332 | Msa0316480:CDS | 45.0% | |
| TTACAGCATTCTCAGCTGCA+GGG | + | chr2_4:13623981-13624000 | Msa0316480:CDS | 45.0% | |
| GTTTGAACTCCACATGTGAC+TGG | - | chr2_4:13624061-13624080 | None:intergenic | 45.0% | |
| CTAGGAGTAATGAGAGAAGG+AGG | - | chr2_4:13622652-13622671 | None:intergenic | 45.0% | |
| GTATGCAGAACTTCTTGTGC+TGG | + | chr2_4:13622695-13622714 | Msa0316480:CDS | 45.0% | |
| GGTGACAACAATGTGAGGAT+CGG | - | chr2_4:13622864-13622883 | None:intergenic | 45.0% | |
| TTGTCACCGATCCATTCATG+TGG | + | chr2_4:13622876-13622895 | Msa0316480:CDS | 45.0% | |
| GGTACTTGATCATAAGGCTC+AGG | - | chr2_4:13623241-13623260 | None:intergenic | 45.0% | |
| TACTCGTTGTCTTCAGTGTC+AGG | + | chr2_4:13623300-13623319 | Msa0316480:CDS | 45.0% | |
| TCAGTGTCAGGACACAATGA+AGG | + | chr2_4:13623312-13623331 | Msa0316480:CDS | 45.0% | |
| CAGTGTCAGGACACAATGAA+GGG | + | chr2_4:13623313-13623332 | Msa0316480:CDS | 45.0% | |
| TTACAGCATTCTCAGCTGCA+GGG | + | chr2_4:13623981-13624000 | Msa0316480:CDS | 45.0% | |
| GTTTGAACTCCACATGTGAC+TGG | - | chr2_4:13624061-13624080 | None:intergenic | 45.0% | |
| CTCGAACTCAGAACACCTTC+CGG | + | chr2_4:13622809-13622828 | Msa0316480:CDS | 50.0% | |
| !! | TGAACTTGGTATCGACCGGA+AGG | - | chr2_4:13622827-13622846 | None:intergenic | 50.0% |
| GGATCGGTGACAACAATGTG+AGG | - | chr2_4:13622869-13622888 | None:intergenic | 50.0% | |
| TGTCAGGACACAATGAAGGG+TGG | + | chr2_4:13623316-13623335 | Msa0316480:CDS | 50.0% | |
| !! | ATGAAGGGTGGTGGAACTTG+TGG | + | chr2_4:13623328-13623347 | Msa0316480:CDS | 50.0% |
| TGTTGGACCGTCTTGATACG+TGG | - | chr2_4:13623606-13623625 | None:intergenic | 50.0% | |
| AGGAAGGTCCATGTAATCGC+AGG | + | chr2_4:13623850-13623869 | Msa0316480:CDS | 50.0% | |
| GTTACAGCATTCTCAGCTGC+AGG | + | chr2_4:13623980-13623999 | Msa0316480:CDS | 50.0% | |
| TACAGCATTCTCAGCTGCAG+GGG | + | chr2_4:13623982-13624001 | Msa0316480:CDS | 50.0% | |
| CTCGAACTCAGAACACCTTC+CGG | + | chr2_4:13622809-13622828 | Msa0316480:CDS | 50.0% | |
| !! | TGAACTTGGTATCGACCGGA+AGG | - | chr2_4:13622827-13622846 | None:intergenic | 50.0% |
| GGATCGGTGACAACAATGTG+AGG | - | chr2_4:13622869-13622888 | None:intergenic | 50.0% | |
| TGTCAGGACACAATGAAGGG+TGG | + | chr2_4:13623316-13623335 | Msa0316480:CDS | 50.0% | |
| !! | ATGAAGGGTGGTGGAACTTG+TGG | + | chr2_4:13623328-13623347 | Msa0316480:CDS | 50.0% |
| TGTTGGACCGTCTTGATACG+TGG | - | chr2_4:13623606-13623625 | None:intergenic | 50.0% | |
| AGGAAGGTCCATGTAATCGC+AGG | + | chr2_4:13623850-13623869 | Msa0316480:CDS | 50.0% | |
| GTTACAGCATTCTCAGCTGC+AGG | + | chr2_4:13623980-13623999 | Msa0316480:CDS | 50.0% | |
| TACAGCATTCTCAGCTGCAG+GGG | + | chr2_4:13623982-13624001 | Msa0316480:CDS | 50.0% | |
| CAGGACACAATGAAGGGTGG+TGG | + | chr2_4:13623319-13623338 | Msa0316480:CDS | 55.0% | |
| TTCTCAGCTGCAGGGGCAAT+TGG | + | chr2_4:13623989-13624008 | Msa0316480:CDS | 55.0% | |
| GCTGCAGGGGCAATTGGAAT+TGG | + | chr2_4:13623995-13624014 | Msa0316480:CDS | 55.0% | |
| GGGGCAATTGGAATTGGAGC+TGG | + | chr2_4:13624001-13624020 | Msa0316480:CDS | 55.0% | |
| GCTACTGCACCAGTCACATG+TGG | + | chr2_4:13624049-13624068 | Msa0316480:CDS | 55.0% | |
| CAGGACACAATGAAGGGTGG+TGG | + | chr2_4:13623319-13623338 | Msa0316480:CDS | 55.0% | |
| TTCTCAGCTGCAGGGGCAAT+TGG | + | chr2_4:13623989-13624008 | Msa0316480:CDS | 55.0% | |
| GCTGCAGGGGCAATTGGAAT+TGG | + | chr2_4:13623995-13624014 | Msa0316480:CDS | 55.0% | |
| GGGGCAATTGGAATTGGAGC+TGG | + | chr2_4:13624001-13624020 | Msa0316480:CDS | 55.0% | |
| GCTACTGCACCAGTCACATG+TGG | + | chr2_4:13624049-13624068 | Msa0316480:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 13622616 | 13624404 | 13622616 | ID=Msa0316480;Name=Msa0316480 |
| chr2_4 | mRNA | 13622616 | 13624404 | 13622616 | ID=Msa0316480-mRNA-1;Parent=Msa0316480;Name=Msa0316480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=13|1|1|1|1|1|3|302|320 |
| chr2_4 | exon | 13622616 | 13623418 | 13622616 | ID=Msa0316480-mRNA-1:exon:5127;Parent=Msa0316480-mRNA-1 |
| chr2_4 | exon | 13623827 | 13623871 | 13623827 | ID=Msa0316480-mRNA-1:exon:5128;Parent=Msa0316480-mRNA-1 |
| chr2_4 | exon | 13623975 | 13624404 | 13623975 | ID=Msa0316480-mRNA-1:exon:5129;Parent=Msa0316480-mRNA-1 |
| chr2_4 | five_prime_UTR | 13622616 | 13622628 | 13622616 | ID=Msa0316480-mRNA-1:five_prime_utr;Parent=Msa0316480-mRNA-1 |
| chr2_4 | CDS | 13622629 | 13623418 | 13622629 | ID=Msa0316480-mRNA-1:cds;Parent=Msa0316480-mRNA-1 |
| chr2_4 | CDS | 13623827 | 13623871 | 13623827 | ID=Msa0316480-mRNA-1:cds;Parent=Msa0316480-mRNA-1 |
| chr2_4 | CDS | 13623975 | 13624102 | 13623975 | ID=Msa0316480-mRNA-1:cds;Parent=Msa0316480-mRNA-1 |
| chr2_4 | three_prime_UTR | 13624103 | 13624404 | 13624103 | ID=Msa0316480-mRNA-1:three_prime_utr;Parent=Msa0316480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
