Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238720 | XP_013462873.1 | 97.188 | 320 | 9 | 0 | 1 | 320 | 1 | 320 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238720 | A0A072V6F0 | 97.188 | 320 | 9 | 0 | 1 | 320 | 1 | 320 | 0.0 | 652 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0108880 | Msa0238720 | 0.800694 | 1.277724e-48 | -8.615850e-47 |
| Msa0238720 | Msa0276440 | 0.887291 | 1.623002e-72 | -8.615850e-47 |
| Msa0238720 | Msa0316480 | 0.845623 | 3.619264e-59 | -8.615850e-47 |
| Msa0238720 | Msa1014320 | 0.815900 | 7.292682e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238720 | MtrunA17_Chr2g0288891 | 97.188 | 320 | 9 | 0 | 1 | 320 | 1 | 320 | 0.0 | 652 |
| Msa0238720 | MtrunA17_Chr4g0075211 | 78.176 | 307 | 65 | 2 | 15 | 320 | 29 | 334 | 0.0 | 520 |
| Msa0238720 | MtrunA17_Chr4g0069121 | 33.333 | 252 | 139 | 11 | 22 | 263 | 32 | 264 | 3.75e-29 | 113 |
| Msa0238720 | MtrunA17_Chr8g0381971 | 28.571 | 287 | 157 | 13 | 4 | 269 | 10 | 269 | 2.38e-22 | 94.7 |
| Msa0238720 | MtrunA17_Chr4g0058901 | 26.923 | 286 | 175 | 11 | 4 | 268 | 8 | 280 | 3.37e-21 | 92.0 |
| Msa0238720 | MtrunA17_Chr5g0415341 | 27.240 | 279 | 164 | 11 | 1 | 262 | 10 | 266 | 2.60e-19 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238720 | AT1G11915.1 | 63.467 | 323 | 112 | 5 | 3 | 320 | 8 | 329 | 1.17e-137 | 393 |
| Msa0238720 | AT3G17350.2 | 31.939 | 263 | 150 | 11 | 19 | 267 | 26 | 273 | 3.10e-24 | 100 |
| Msa0238720 | AT3G17350.1 | 32.143 | 252 | 144 | 10 | 19 | 258 | 26 | 262 | 4.78e-24 | 100 |
| Msa0238720 | AT5G50290.1 | 28.205 | 273 | 166 | 9 | 8 | 262 | 6 | 266 | 2.26e-20 | 90.1 |
| Msa0238720 | AT1G10380.2 | 28.287 | 251 | 159 | 9 | 24 | 262 | 29 | 270 | 3.01e-16 | 78.2 |
| Msa0238720 | AT1G10380.1 | 28.287 | 251 | 159 | 9 | 24 | 262 | 29 | 270 | 3.69e-16 | 78.2 |
Find 70 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAAGATTCACTTGCTTT+TGG | 0.216568 | 2_2:-12538099 | None:intergenic |
| TATGATCAAGTACCTGAATA+TGG | 0.236309 | 2_2:+12538189 | Msa0238720:CDS |
| TTGGAATTGGAGCTGGTATT+TGG | 0.243382 | 2_2:+12538958 | Msa0238720:CDS |
| CTAGTTATGCTAGTGTTTAT+TGG | 0.264957 | 2_2:+12538142 | Msa0238720:CDS |
| GTGCTAGTGTCTAAACTAAA+TGG | 0.287964 | 2_2:-12537877 | None:intergenic |
| TTCTCAGCTGCAGGGGCAAT+TGG | 0.337882 | 2_2:+12538939 | Msa0238720:CDS |
| AAGAAATTGCACAGCACAAT+AGG | 0.351853 | 2_2:+12538779 | Msa0238720:CDS |
| AGAATGTGGCATAGAATTCT+TGG | 0.373172 | 2_2:+12539325 | Msa0238720:three_prime_UTR |
| AGTGTTTATTGGAGGGATAT+TGG | 0.378579 | 2_2:+12538153 | Msa0238720:CDS |
| TGTTCACAAAACATAGGCTT+TGG | 0.380089 | 2_2:-12537970 | None:intergenic |
| GAGAGAATGTGTCTGTAGTA+TGG | 0.384362 | 2_2:-12537706 | None:intergenic |
| CAAGATGAATCACAATGTTC+AGG | 0.392043 | 2_2:-12537997 | None:intergenic |
| TCAACTCTAATCCCATATTC+AGG | 0.393312 | 2_2:-12538201 | None:intergenic |
| GCTGCAGGGGCAATTGGAAT+TGG | 0.402123 | 2_2:+12538945 | Msa0238720:CDS |
| TTAGAATAGTCTATTATCAT+TGG | 0.412158 | 2_2:-12539030 | None:intergenic |
| TGAAGACAATGAGTTGTAAC+AGG | 0.413119 | 2_2:-12538234 | None:intergenic |
| CAAAAGCAAGTGAATCTTTG+AGG | 0.416395 | 2_2:+12538100 | Msa0238720:CDS |
| TTGTGTATTAATGTAAGTTA+AGG | 0.420734 | 2_2:+12539149 | Msa0238720:three_prime_UTR |
| TCTGTTTACCTGCGATTACA+TGG | 0.422072 | 2_2:-12538807 | None:intergenic |
| CTTGAACTCAGAACACCTTC+CGG | 0.425890 | 2_2:+12537751 | Msa0238720:CDS |
| TATTCAGGTACTTGATCATA+AGG | 0.447126 | 2_2:-12538186 | None:intergenic |
| AACTCATTGTCTTCAATGTC+AGG | 0.451481 | 2_2:+12538242 | Msa0238720:CDS |
| TCCTCACATTTCCACATGAA+TGG | 0.463278 | 2_2:-12537829 | None:intergenic |
| GTTACAGCATTCTCAGCTGC+AGG | 0.468617 | 2_2:+12538930 | Msa0238720:CDS |
| TTTATGTGTTTGTGTAAGGA+TGG | 0.480529 | 2_2:+12538315 | Msa0238720:CDS |
| TATAGCTTATGTTATGAACT+TGG | 0.483428 | 2_2:-12537780 | None:intergenic |
| TATCCGTTTAGCATTGATGA+TGG | 0.488256 | 2_2:+12537673 | Msa0238720:CDS |
| CATCCATCATCAATGCTAAA+CGG | 0.488393 | 2_2:-12537676 | None:intergenic |
| ATGATCAAGTACCTGAATAT+GGG | 0.489019 | 2_2:+12538190 | Msa0238720:CDS |
| TAAATAAACTACAATAGCTA+AGG | 0.489416 | 2_2:-12539108 | None:intergenic |
| GTTATGCTAGTGTTTATTGG+AGG | 0.492582 | 2_2:+12538145 | Msa0238720:CDS |
| GGAAAATGTTCACAAAACAT+AGG | 0.507873 | 2_2:-12537976 | None:intergenic |
| ATTAATGTAAGTTAAGGTGT+TGG | 0.514314 | 2_2:+12539155 | Msa0238720:three_prime_UTR |
| TGACTAGGAGTAAAGAGAGA+AGG | 0.515959 | 2_2:-12537594 | None:intergenic |
| TACTTATGCAGACATTTACC+AGG | 0.520887 | 2_2:+12538033 | Msa0238720:CDS |
| GTTATGAACTTGGTATCGAC+CGG | 0.521862 | 2_2:-12537770 | None:intergenic |
| CTAGGAGTAAAGAGAGAAGG+AGG | 0.526442 | 2_2:-12537591 | None:intergenic |
| GGTACTTGATCATAAGGCTC+AGG | 0.533579 | 2_2:-12538180 | None:intergenic |
| TTATGCTAGTGTTTATTGGA+GGG | 0.537025 | 2_2:+12538146 | Msa0238720:CDS |
| GTTTGAACTCCACATGTGAC+TGG | 0.542667 | 2_2:-12539008 | None:intergenic |
| TCAATGTCAGGACACAATGA+AGG | 0.545706 | 2_2:+12538254 | Msa0238720:CDS |
| AAATAAACTACAATAGCTAA+GGG | 0.551100 | 2_2:-12539107 | None:intergenic |
| AATAAACTACAATAGCTAAG+GGG | 0.556296 | 2_2:-12539106 | None:intergenic |
| AACTCCACTACACATTGTAA+AGG | 0.560482 | 2_2:+12538339 | Msa0238720:CDS |
| TTTAGCATTGATGATGGATG+TGG | 0.568292 | 2_2:+12537679 | Msa0238720:CDS |
| GGGGCAATTGGAATTGGAGC+TGG | 0.569061 | 2_2:+12538951 | Msa0238720:CDS |
| ATAAACTACAATAGCTAAGG+GGG | 0.570887 | 2_2:-12539105 | None:intergenic |
| AGGAAGGTCCATGTAATCGC+AGG | 0.573932 | 2_2:+12538799 | Msa0238720:CDS |
| TTACAGCATTCTCAGCTGCA+GGG | 0.578537 | 2_2:+12538931 | Msa0238720:CDS |
| CATACCTTTACAATGTGTAG+TGG | 0.589945 | 2_2:-12538343 | None:intergenic |
| CAGGACACAATGAAGGGTGG+TGG | 0.591439 | 2_2:+12538261 | Msa0238720:CDS |
| ATGAAATGATTATAAGAATG+TGG | 0.594732 | 2_2:+12539311 | Msa0238720:three_prime_UTR |
| ATGAAGGGTGGTGGAACTTG+TGG | 0.595707 | 2_2:+12538270 | Msa0238720:CDS |
| TGGAACTTGTGGATTTGATA+CGG | 0.599283 | 2_2:+12538281 | Msa0238720:CDS |
| AGCATATGCAGAACTTCTTG+TGG | 0.599981 | 2_2:+12537634 | Msa0238720:CDS |
| AAACTACAATAGCTAAGGGG+GGG | 0.616879 | 2_2:-12539103 | None:intergenic |
| CAATGTCAGGACACAATGAA+GGG | 0.621855 | 2_2:+12538255 | Msa0238720:CDS |
| GGATCGGTGACAACGATGTG+AGG | 0.625024 | 2_2:-12537808 | None:intergenic |
| ACATTTCCACATGAATGGAT+CGG | 0.629048 | 2_2:-12537824 | None:intergenic |
| TCTAAACTAAATGGTCGCGT+AGG | 0.631352 | 2_2:-12537868 | None:intergenic |
| TAAACTACAATAGCTAAGGG+GGG | 0.638175 | 2_2:-12539104 | None:intergenic |
| TTGTCACCGATCCATTCATG+TGG | 0.644932 | 2_2:+12537818 | Msa0238720:CDS |
| TACAGCATTCTCAGCTGCAG+GGG | 0.645559 | 2_2:+12538932 | Msa0238720:CDS |
| AATTGCACAGCACAATAGGA+AGG | 0.647476 | 2_2:+12538783 | Msa0238720:CDS |
| TGAACTTGGTATCGACCGGA+AGG | 0.647859 | 2_2:-12537766 | None:intergenic |
| GCTACTGCACCAGTCACATG+TGG | 0.647888 | 2_2:+12538999 | Msa0238720:CDS |
| TTCATGTGGAAATGTGAGGA+TGG | 0.661162 | 2_2:+12537832 | Msa0238720:CDS |
| TCCATTCATGTGGAAATGTG+AGG | 0.693776 | 2_2:+12537828 | Msa0238720:CDS |
| ACTTATGCAGACATTTACCA+GGG | 0.706431 | 2_2:+12538034 | Msa0238720:CDS |
| TGTCAGGACACAATGAAGGG+TGG | 0.712905 | 2_2:+12538258 | Msa0238720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACACATAATTCAATAGAATA+GGG | - | chr2_2:12538381-12538400 | None:intergenic | 20.0% |
| !! | TACACATAATTCAATAGAAT+AGG | - | chr2_2:12538382-12538401 | None:intergenic | 20.0% |
| !!! | ATGATTAATTGTACTAGTTT+CGG | - | chr2_2:12538430-12538449 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGGTACAAAAGA+GGG | - | chr2_2:12538641-12538660 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGGTACAAAAG+AGG | - | chr2_2:12538642-12538661 | None:intergenic | 20.0% |
| !!! | GAACGACTTTTTTTTTTTTT+TGG | - | chr2_2:12538653-12538672 | None:intergenic | 20.0% |
| !! | TACTGAAATAACAAAAACTT+AGG | + | chr2_2:12538860-12538879 | Msa0238720:intron | 20.0% |
| !! | TTAGAATAGTCTATTATCAT+TGG | - | chr2_2:12539033-12539052 | None:intergenic | 20.0% |
| !! | AAATAAACTACAATAGCTAA+GGG | - | chr2_2:12539110-12539129 | None:intergenic | 20.0% |
| !! | TAAATAAACTACAATAGCTA+AGG | - | chr2_2:12539111-12539130 | None:intergenic | 20.0% |
| !! | TTGTGTATTAATGTAAGTTA+AGG | + | chr2_2:12539149-12539168 | Msa0238720:three_prime_UTR | 20.0% |
| !! | ATGAAATGATTATAAGAATG+TGG | + | chr2_2:12539311-12539330 | Msa0238720:three_prime_UTR | 20.0% |
| !! | ACACATAATTCAATAGAATA+GGG | - | chr2_2:12538381-12538400 | None:intergenic | 20.0% |
| !! | TACACATAATTCAATAGAAT+AGG | - | chr2_2:12538382-12538401 | None:intergenic | 20.0% |
| !!! | ATGATTAATTGTACTAGTTT+CGG | - | chr2_2:12538430-12538449 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGGTACAAAAGA+GGG | - | chr2_2:12538641-12538660 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGGTACAAAAG+AGG | - | chr2_2:12538642-12538661 | None:intergenic | 20.0% |
| !!! | GAACGACTTTTTTTTTTTTT+TGG | - | chr2_2:12538653-12538672 | None:intergenic | 20.0% |
| !! | TACTGAAATAACAAAAACTT+AGG | + | chr2_2:12538860-12538879 | Msa0238720:intron | 20.0% |
| !! | TTAGAATAGTCTATTATCAT+TGG | - | chr2_2:12539033-12539052 | None:intergenic | 20.0% |
| !! | AAATAAACTACAATAGCTAA+GGG | - | chr2_2:12539110-12539129 | None:intergenic | 20.0% |
| !! | TAAATAAACTACAATAGCTA+AGG | - | chr2_2:12539111-12539130 | None:intergenic | 20.0% |
| !! | TTGTGTATTAATGTAAGTTA+AGG | + | chr2_2:12539149-12539168 | Msa0238720:three_prime_UTR | 20.0% |
| !! | ATGAAATGATTATAAGAATG+TGG | + | chr2_2:12539311-12539330 | Msa0238720:three_prime_UTR | 20.0% |
| !!! | TTCAAGTTTTTTTTCTGAGT+CGG | - | chr2_2:12537737-12537756 | None:intergenic | 25.0% |
| ! | TATAGCTTATGTTATGAACT+TGG | - | chr2_2:12537783-12537802 | None:intergenic | 25.0% |
| !! | TGATTAATTGTACTAGTTTC+GGG | - | chr2_2:12538429-12538448 | None:intergenic | 25.0% |
| ! | TACCTATAATAGTGTTATGT+TGG | - | chr2_2:12538565-12538584 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAAGTCGTTCAC+AGG | + | chr2_2:12538655-12538674 | Msa0238720:intron | 25.0% |
| ! | ATATTCTCTCATTCAACTTA+AGG | - | chr2_2:12538727-12538746 | None:intergenic | 25.0% |
| ! | TTGATTGTCTAATGTTTGTT+TGG | + | chr2_2:12538750-12538769 | Msa0238720:intron | 25.0% |
| ! | AATAAACTACAATAGCTAAG+GGG | - | chr2_2:12539109-12539128 | None:intergenic | 25.0% |
| ! | ATTAATGTAAGTTAAGGTGT+TGG | + | chr2_2:12539155-12539174 | Msa0238720:three_prime_UTR | 25.0% |
| !! | TGTATTTAAGTCTGAGTTTT+TGG | - | chr2_2:12539278-12539297 | None:intergenic | 25.0% |
| !!! | TTCAAGTTTTTTTTCTGAGT+CGG | - | chr2_2:12537737-12537756 | None:intergenic | 25.0% |
| ! | TATAGCTTATGTTATGAACT+TGG | - | chr2_2:12537783-12537802 | None:intergenic | 25.0% |
| !! | TGATTAATTGTACTAGTTTC+GGG | - | chr2_2:12538429-12538448 | None:intergenic | 25.0% |
| ! | TACCTATAATAGTGTTATGT+TGG | - | chr2_2:12538565-12538584 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAAGTCGTTCAC+AGG | + | chr2_2:12538655-12538674 | Msa0238720:intron | 25.0% |
| ! | ATATTCTCTCATTCAACTTA+AGG | - | chr2_2:12538727-12538746 | None:intergenic | 25.0% |
| ! | TTGATTGTCTAATGTTTGTT+TGG | + | chr2_2:12538750-12538769 | Msa0238720:intron | 25.0% |
| ! | AATAAACTACAATAGCTAAG+GGG | - | chr2_2:12539109-12539128 | None:intergenic | 25.0% |
| ! | ATTAATGTAAGTTAAGGTGT+TGG | + | chr2_2:12539155-12539174 | Msa0238720:three_prime_UTR | 25.0% |
| !! | TGTATTTAAGTCTGAGTTTT+TGG | - | chr2_2:12539278-12539297 | None:intergenic | 25.0% |
| !! | ATTGAGATTTTGTTGTGACT+AGG | - | chr2_2:12537612-12537631 | None:intergenic | 30.0% |
| GGAAAATGTTCACAAAACAT+AGG | - | chr2_2:12537979-12537998 | None:intergenic | 30.0% | |
| CTAGTTATGCTAGTGTTTAT+TGG | + | chr2_2:12538142-12538161 | Msa0238720:CDS | 30.0% | |
| TTATGCTAGTGTTTATTGGA+GGG | + | chr2_2:12538146-12538165 | Msa0238720:CDS | 30.0% | |
| TATTCAGGTACTTGATCATA+AGG | - | chr2_2:12538189-12538208 | None:intergenic | 30.0% | |
| TATGATCAAGTACCTGAATA+TGG | + | chr2_2:12538189-12538208 | Msa0238720:CDS | 30.0% | |
| ATGATCAAGTACCTGAATAT+GGG | + | chr2_2:12538190-12538209 | Msa0238720:CDS | 30.0% | |
| !! | GAGTTTTATGTGTTTGTGTA+AGG | + | chr2_2:12538311-12538330 | Msa0238720:CDS | 30.0% |
| TTTATGTGTTTGTGTAAGGA+TGG | + | chr2_2:12538315-12538334 | Msa0238720:CDS | 30.0% | |
| ! | TCTCTAGAAATTAAAGCTCA+CGG | - | chr2_2:12538484-12538503 | None:intergenic | 30.0% |
| GTCCAACATAACACTATTAT+AGG | + | chr2_2:12538560-12538579 | Msa0238720:intron | 30.0% | |
| !!! | TAGTCATTGTTGTTTTGTCT+TGG | + | chr2_2:12538888-12538907 | Msa0238720:intron | 30.0% |
| ATAAACTACAATAGCTAAGG+GGG | - | chr2_2:12539108-12539127 | None:intergenic | 30.0% | |
| !! | ATTGAGATTTTGTTGTGACT+AGG | - | chr2_2:12537612-12537631 | None:intergenic | 30.0% |
| GGAAAATGTTCACAAAACAT+AGG | - | chr2_2:12537979-12537998 | None:intergenic | 30.0% | |
| CTAGTTATGCTAGTGTTTAT+TGG | + | chr2_2:12538142-12538161 | Msa0238720:CDS | 30.0% | |
| TTATGCTAGTGTTTATTGGA+GGG | + | chr2_2:12538146-12538165 | Msa0238720:CDS | 30.0% | |
| TATTCAGGTACTTGATCATA+AGG | - | chr2_2:12538189-12538208 | None:intergenic | 30.0% | |
| TATGATCAAGTACCTGAATA+TGG | + | chr2_2:12538189-12538208 | Msa0238720:CDS | 30.0% | |
| ATGATCAAGTACCTGAATAT+GGG | + | chr2_2:12538190-12538209 | Msa0238720:CDS | 30.0% | |
| !! | GAGTTTTATGTGTTTGTGTA+AGG | + | chr2_2:12538311-12538330 | Msa0238720:CDS | 30.0% |
| TTTATGTGTTTGTGTAAGGA+TGG | + | chr2_2:12538315-12538334 | Msa0238720:CDS | 30.0% | |
| ! | TCTCTAGAAATTAAAGCTCA+CGG | - | chr2_2:12538484-12538503 | None:intergenic | 30.0% |
| GTCCAACATAACACTATTAT+AGG | + | chr2_2:12538560-12538579 | Msa0238720:intron | 30.0% | |
| !!! | TAGTCATTGTTGTTTTGTCT+TGG | + | chr2_2:12538888-12538907 | Msa0238720:intron | 30.0% |
| ATAAACTACAATAGCTAAGG+GGG | - | chr2_2:12539108-12539127 | None:intergenic | 30.0% | |
| !! | TATCCGTTTAGCATTGATGA+TGG | + | chr2_2:12537673-12537692 | Msa0238720:CDS | 35.0% |
| CATCCATCATCAATGCTAAA+CGG | - | chr2_2:12537679-12537698 | None:intergenic | 35.0% | |
| !! | TTTAGCATTGATGATGGATG+TGG | + | chr2_2:12537679-12537698 | Msa0238720:CDS | 35.0% |
| ACATTTCCACATGAATGGAT+CGG | - | chr2_2:12537827-12537846 | None:intergenic | 35.0% | |
| GTGCTAGTGTCTAAACTAAA+TGG | - | chr2_2:12537880-12537899 | None:intergenic | 35.0% | |
| TGTTCACAAAACATAGGCTT+TGG | - | chr2_2:12537973-12537992 | None:intergenic | 35.0% | |
| CAAGATGAATCACAATGTTC+AGG | - | chr2_2:12538000-12538019 | None:intergenic | 35.0% | |
| TACTTATGCAGACATTTACC+AGG | + | chr2_2:12538033-12538052 | Msa0238720:CDS | 35.0% | |
| ACTTATGCAGACATTTACCA+GGG | + | chr2_2:12538034-12538053 | Msa0238720:CDS | 35.0% | |
| ! | CTCAAAGATTCACTTGCTTT+TGG | - | chr2_2:12538102-12538121 | None:intergenic | 35.0% |
| CAAAAGCAAGTGAATCTTTG+AGG | + | chr2_2:12538100-12538119 | Msa0238720:CDS | 35.0% | |
| GTTATGCTAGTGTTTATTGG+AGG | + | chr2_2:12538145-12538164 | Msa0238720:CDS | 35.0% | |
| AGTGTTTATTGGAGGGATAT+TGG | + | chr2_2:12538153-12538172 | Msa0238720:CDS | 35.0% | |
| TCAACTCTAATCCCATATTC+AGG | - | chr2_2:12538204-12538223 | None:intergenic | 35.0% | |
| TGAAGACAATGAGTTGTAAC+AGG | - | chr2_2:12538237-12538256 | None:intergenic | 35.0% | |
| AACTCATTGTCTTCAATGTC+AGG | + | chr2_2:12538242-12538261 | Msa0238720:CDS | 35.0% | |
| TGGAACTTGTGGATTTGATA+CGG | + | chr2_2:12538281-12538300 | Msa0238720:CDS | 35.0% | |
| AACTCCACTACACATTGTAA+AGG | + | chr2_2:12538339-12538358 | Msa0238720:CDS | 35.0% | |
| CATACCTTTACAATGTGTAG+TGG | - | chr2_2:12538346-12538365 | None:intergenic | 35.0% | |
| ! | TTGTACTAGTTTCGGGTAAA+GGG | - | chr2_2:12538422-12538441 | None:intergenic | 35.0% |
| ! | ATTGTACTAGTTTCGGGTAA+AGG | - | chr2_2:12538423-12538442 | None:intergenic | 35.0% |
| ! | GAGCTTTAATTTCTAGAGAG+CGG | + | chr2_2:12538485-12538504 | Msa0238720:intron | 35.0% |
| ATATGTGGTCTATTGTTGAC+GGG | - | chr2_2:12538533-12538552 | None:intergenic | 35.0% | |
| GATATGTGGTCTATTGTTGA+CGG | - | chr2_2:12538534-12538553 | None:intergenic | 35.0% | |
| CAATAGACCACATATCAAGA+CGG | + | chr2_2:12538538-12538557 | Msa0238720:intron | 35.0% | |
| ACAAATAAAGTCGTTCACAC+AGG | + | chr2_2:12538610-12538629 | Msa0238720:intron | 35.0% | |
| AAGAAATTGCACAGCACAAT+AGG | + | chr2_2:12538779-12538798 | Msa0238720:CDS | 35.0% | |
| !! | GTTGTTTTGTCTTGGAATTG+TGG | + | chr2_2:12538896-12538915 | Msa0238720:intron | 35.0% |
| TAAACTACAATAGCTAAGGG+GGG | - | chr2_2:12539107-12539126 | None:intergenic | 35.0% | |
| ! | GCTCAATTCATTTTCACTGT+AGG | + | chr2_2:12539217-12539236 | Msa0238720:three_prime_UTR | 35.0% |
| AGAATGTGGCATAGAATTCT+TGG | + | chr2_2:12539325-12539344 | Msa0238720:three_prime_UTR | 35.0% | |
| !! | TATCCGTTTAGCATTGATGA+TGG | + | chr2_2:12537673-12537692 | Msa0238720:CDS | 35.0% |
| CATCCATCATCAATGCTAAA+CGG | - | chr2_2:12537679-12537698 | None:intergenic | 35.0% | |
| !! | TTTAGCATTGATGATGGATG+TGG | + | chr2_2:12537679-12537698 | Msa0238720:CDS | 35.0% |
| ACATTTCCACATGAATGGAT+CGG | - | chr2_2:12537827-12537846 | None:intergenic | 35.0% | |
| GTGCTAGTGTCTAAACTAAA+TGG | - | chr2_2:12537880-12537899 | None:intergenic | 35.0% | |
| TGTTCACAAAACATAGGCTT+TGG | - | chr2_2:12537973-12537992 | None:intergenic | 35.0% | |
| CAAGATGAATCACAATGTTC+AGG | - | chr2_2:12538000-12538019 | None:intergenic | 35.0% | |
| TACTTATGCAGACATTTACC+AGG | + | chr2_2:12538033-12538052 | Msa0238720:CDS | 35.0% | |
| ACTTATGCAGACATTTACCA+GGG | + | chr2_2:12538034-12538053 | Msa0238720:CDS | 35.0% | |
| ! | CTCAAAGATTCACTTGCTTT+TGG | - | chr2_2:12538102-12538121 | None:intergenic | 35.0% |
| CAAAAGCAAGTGAATCTTTG+AGG | + | chr2_2:12538100-12538119 | Msa0238720:CDS | 35.0% | |
| GTTATGCTAGTGTTTATTGG+AGG | + | chr2_2:12538145-12538164 | Msa0238720:CDS | 35.0% | |
| AGTGTTTATTGGAGGGATAT+TGG | + | chr2_2:12538153-12538172 | Msa0238720:CDS | 35.0% | |
| TCAACTCTAATCCCATATTC+AGG | - | chr2_2:12538204-12538223 | None:intergenic | 35.0% | |
| TGAAGACAATGAGTTGTAAC+AGG | - | chr2_2:12538237-12538256 | None:intergenic | 35.0% | |
| AACTCATTGTCTTCAATGTC+AGG | + | chr2_2:12538242-12538261 | Msa0238720:CDS | 35.0% | |
| TGGAACTTGTGGATTTGATA+CGG | + | chr2_2:12538281-12538300 | Msa0238720:CDS | 35.0% | |
| AACTCCACTACACATTGTAA+AGG | + | chr2_2:12538339-12538358 | Msa0238720:CDS | 35.0% | |
| CATACCTTTACAATGTGTAG+TGG | - | chr2_2:12538346-12538365 | None:intergenic | 35.0% | |
| ! | TTGTACTAGTTTCGGGTAAA+GGG | - | chr2_2:12538422-12538441 | None:intergenic | 35.0% |
| ! | ATTGTACTAGTTTCGGGTAA+AGG | - | chr2_2:12538423-12538442 | None:intergenic | 35.0% |
| ! | GAGCTTTAATTTCTAGAGAG+CGG | + | chr2_2:12538485-12538504 | Msa0238720:intron | 35.0% |
| ATATGTGGTCTATTGTTGAC+GGG | - | chr2_2:12538533-12538552 | None:intergenic | 35.0% | |
| GATATGTGGTCTATTGTTGA+CGG | - | chr2_2:12538534-12538553 | None:intergenic | 35.0% | |
| CAATAGACCACATATCAAGA+CGG | + | chr2_2:12538538-12538557 | Msa0238720:intron | 35.0% | |
| ACAAATAAAGTCGTTCACAC+AGG | + | chr2_2:12538610-12538629 | Msa0238720:intron | 35.0% | |
| AAGAAATTGCACAGCACAAT+AGG | + | chr2_2:12538779-12538798 | Msa0238720:CDS | 35.0% | |
| !! | GTTGTTTTGTCTTGGAATTG+TGG | + | chr2_2:12538896-12538915 | Msa0238720:intron | 35.0% |
| TAAACTACAATAGCTAAGGG+GGG | - | chr2_2:12539107-12539126 | None:intergenic | 35.0% | |
| ! | GCTCAATTCATTTTCACTGT+AGG | + | chr2_2:12539217-12539236 | Msa0238720:three_prime_UTR | 35.0% |
| AGAATGTGGCATAGAATTCT+TGG | + | chr2_2:12539325-12539344 | Msa0238720:three_prime_UTR | 35.0% | |
| TGACTAGGAGTAAAGAGAGA+AGG | - | chr2_2:12537597-12537616 | None:intergenic | 40.0% | |
| AGCATATGCAGAACTTCTTG+TGG | + | chr2_2:12537634-12537653 | Msa0238720:CDS | 40.0% | |
| GAGAGAATGTGTCTGTAGTA+TGG | - | chr2_2:12537709-12537728 | None:intergenic | 40.0% | |
| !! | GTTATGAACTTGGTATCGAC+CGG | - | chr2_2:12537773-12537792 | None:intergenic | 40.0% |
| TCCATTCATGTGGAAATGTG+AGG | + | chr2_2:12537828-12537847 | Msa0238720:CDS | 40.0% | |
| TCCTCACATTTCCACATGAA+TGG | - | chr2_2:12537832-12537851 | None:intergenic | 40.0% | |
| TTCATGTGGAAATGTGAGGA+TGG | + | chr2_2:12537832-12537851 | Msa0238720:CDS | 40.0% | |
| TCTAAACTAAATGGTCGCGT+AGG | - | chr2_2:12537871-12537890 | None:intergenic | 40.0% | |
| GTTAGAGAAAAAGAACACCC+TGG | - | chr2_2:12538054-12538073 | None:intergenic | 40.0% | |
| TCAATGTCAGGACACAATGA+AGG | + | chr2_2:12538254-12538273 | Msa0238720:CDS | 40.0% | |
| CAATGTCAGGACACAATGAA+GGG | + | chr2_2:12538255-12538274 | Msa0238720:CDS | 40.0% | |
| AATTGCACAGCACAATAGGA+AGG | + | chr2_2:12538783-12538802 | Msa0238720:CDS | 40.0% | |
| TCTGTTTACCTGCGATTACA+TGG | - | chr2_2:12538810-12538829 | None:intergenic | 40.0% | |
| TGTCTTGGAATTGTGGTTTC+AGG | + | chr2_2:12538903-12538922 | Msa0238720:intron | 40.0% | |
| GTCTTGGAATTGTGGTTTCA+GGG | + | chr2_2:12538904-12538923 | Msa0238720:intron | 40.0% | |
| TTGGAATTGGAGCTGGTATT+TGG | + | chr2_2:12538958-12538977 | Msa0238720:CDS | 40.0% | |
| AAACTACAATAGCTAAGGGG+GGG | - | chr2_2:12539106-12539125 | None:intergenic | 40.0% | |
| TGAGAAAAATCGCAGAGGAT+TGG | - | chr2_2:12539255-12539274 | None:intergenic | 40.0% | |
| TTTGGTGAGAAAAATCGCAG+AGG | - | chr2_2:12539260-12539279 | None:intergenic | 40.0% | |
| TGACTAGGAGTAAAGAGAGA+AGG | - | chr2_2:12537597-12537616 | None:intergenic | 40.0% | |
| AGCATATGCAGAACTTCTTG+TGG | + | chr2_2:12537634-12537653 | Msa0238720:CDS | 40.0% | |
| GAGAGAATGTGTCTGTAGTA+TGG | - | chr2_2:12537709-12537728 | None:intergenic | 40.0% | |
| !! | GTTATGAACTTGGTATCGAC+CGG | - | chr2_2:12537773-12537792 | None:intergenic | 40.0% |
| TCCATTCATGTGGAAATGTG+AGG | + | chr2_2:12537828-12537847 | Msa0238720:CDS | 40.0% | |
| TCCTCACATTTCCACATGAA+TGG | - | chr2_2:12537832-12537851 | None:intergenic | 40.0% | |
| TTCATGTGGAAATGTGAGGA+TGG | + | chr2_2:12537832-12537851 | Msa0238720:CDS | 40.0% | |
| TCTAAACTAAATGGTCGCGT+AGG | - | chr2_2:12537871-12537890 | None:intergenic | 40.0% | |
| GTTAGAGAAAAAGAACACCC+TGG | - | chr2_2:12538054-12538073 | None:intergenic | 40.0% | |
| TCAATGTCAGGACACAATGA+AGG | + | chr2_2:12538254-12538273 | Msa0238720:CDS | 40.0% | |
| CAATGTCAGGACACAATGAA+GGG | + | chr2_2:12538255-12538274 | Msa0238720:CDS | 40.0% | |
| AATTGCACAGCACAATAGGA+AGG | + | chr2_2:12538783-12538802 | Msa0238720:CDS | 40.0% | |
| TCTGTTTACCTGCGATTACA+TGG | - | chr2_2:12538810-12538829 | None:intergenic | 40.0% | |
| TGTCTTGGAATTGTGGTTTC+AGG | + | chr2_2:12538903-12538922 | Msa0238720:intron | 40.0% | |
| GTCTTGGAATTGTGGTTTCA+GGG | + | chr2_2:12538904-12538923 | Msa0238720:intron | 40.0% | |
| TTGGAATTGGAGCTGGTATT+TGG | + | chr2_2:12538958-12538977 | Msa0238720:CDS | 40.0% | |
| AAACTACAATAGCTAAGGGG+GGG | - | chr2_2:12539106-12539125 | None:intergenic | 40.0% | |
| TGAGAAAAATCGCAGAGGAT+TGG | - | chr2_2:12539255-12539274 | None:intergenic | 40.0% | |
| TTTGGTGAGAAAAATCGCAG+AGG | - | chr2_2:12539260-12539279 | None:intergenic | 40.0% | |
| CTAGGAGTAAAGAGAGAAGG+AGG | - | chr2_2:12537594-12537613 | None:intergenic | 45.0% | |
| CTTGAACTCAGAACACCTTC+CGG | + | chr2_2:12537751-12537770 | Msa0238720:CDS | 45.0% | |
| TTGTCACCGATCCATTCATG+TGG | + | chr2_2:12537818-12537837 | Msa0238720:CDS | 45.0% | |
| GGTACTTGATCATAAGGCTC+AGG | - | chr2_2:12538183-12538202 | None:intergenic | 45.0% | |
| TGTTGGACCGTCTTGATATG+TGG | - | chr2_2:12538548-12538567 | None:intergenic | 45.0% | |
| TTACAGCATTCTCAGCTGCA+GGG | + | chr2_2:12538931-12538950 | Msa0238720:CDS | 45.0% | |
| GTTTGAACTCCACATGTGAC+TGG | - | chr2_2:12539011-12539030 | None:intergenic | 45.0% | |
| CTAGGAGTAAAGAGAGAAGG+AGG | - | chr2_2:12537594-12537613 | None:intergenic | 45.0% | |
| CTTGAACTCAGAACACCTTC+CGG | + | chr2_2:12537751-12537770 | Msa0238720:CDS | 45.0% | |
| TTGTCACCGATCCATTCATG+TGG | + | chr2_2:12537818-12537837 | Msa0238720:CDS | 45.0% | |
| GGTACTTGATCATAAGGCTC+AGG | - | chr2_2:12538183-12538202 | None:intergenic | 45.0% | |
| TGTTGGACCGTCTTGATATG+TGG | - | chr2_2:12538548-12538567 | None:intergenic | 45.0% | |
| TTACAGCATTCTCAGCTGCA+GGG | + | chr2_2:12538931-12538950 | Msa0238720:CDS | 45.0% | |
| GTTTGAACTCCACATGTGAC+TGG | - | chr2_2:12539011-12539030 | None:intergenic | 45.0% | |
| !! | TGAACTTGGTATCGACCGGA+AGG | - | chr2_2:12537769-12537788 | None:intergenic | 50.0% |
| TGTCAGGACACAATGAAGGG+TGG | + | chr2_2:12538258-12538277 | Msa0238720:CDS | 50.0% | |
| !! | ATGAAGGGTGGTGGAACTTG+TGG | + | chr2_2:12538270-12538289 | Msa0238720:CDS | 50.0% |
| AGGAAGGTCCATGTAATCGC+AGG | + | chr2_2:12538799-12538818 | Msa0238720:CDS | 50.0% | |
| GTTACAGCATTCTCAGCTGC+AGG | + | chr2_2:12538930-12538949 | Msa0238720:CDS | 50.0% | |
| TACAGCATTCTCAGCTGCAG+GGG | + | chr2_2:12538932-12538951 | Msa0238720:CDS | 50.0% | |
| !! | TGAACTTGGTATCGACCGGA+AGG | - | chr2_2:12537769-12537788 | None:intergenic | 50.0% |
| TGTCAGGACACAATGAAGGG+TGG | + | chr2_2:12538258-12538277 | Msa0238720:CDS | 50.0% | |
| !! | ATGAAGGGTGGTGGAACTTG+TGG | + | chr2_2:12538270-12538289 | Msa0238720:CDS | 50.0% |
| AGGAAGGTCCATGTAATCGC+AGG | + | chr2_2:12538799-12538818 | Msa0238720:CDS | 50.0% | |
| GTTACAGCATTCTCAGCTGC+AGG | + | chr2_2:12538930-12538949 | Msa0238720:CDS | 50.0% | |
| TACAGCATTCTCAGCTGCAG+GGG | + | chr2_2:12538932-12538951 | Msa0238720:CDS | 50.0% | |
| GGATCGGTGACAACGATGTG+AGG | - | chr2_2:12537811-12537830 | None:intergenic | 55.0% | |
| CAGGACACAATGAAGGGTGG+TGG | + | chr2_2:12538261-12538280 | Msa0238720:CDS | 55.0% | |
| TTCTCAGCTGCAGGGGCAAT+TGG | + | chr2_2:12538939-12538958 | Msa0238720:CDS | 55.0% | |
| GCTGCAGGGGCAATTGGAAT+TGG | + | chr2_2:12538945-12538964 | Msa0238720:CDS | 55.0% | |
| GGGGCAATTGGAATTGGAGC+TGG | + | chr2_2:12538951-12538970 | Msa0238720:CDS | 55.0% | |
| GCTACTGCACCAGTCACATG+TGG | + | chr2_2:12538999-12539018 | Msa0238720:CDS | 55.0% | |
| GGATCGGTGACAACGATGTG+AGG | - | chr2_2:12537811-12537830 | None:intergenic | 55.0% | |
| CAGGACACAATGAAGGGTGG+TGG | + | chr2_2:12538261-12538280 | Msa0238720:CDS | 55.0% | |
| TTCTCAGCTGCAGGGGCAAT+TGG | + | chr2_2:12538939-12538958 | Msa0238720:CDS | 55.0% | |
| GCTGCAGGGGCAATTGGAAT+TGG | + | chr2_2:12538945-12538964 | Msa0238720:CDS | 55.0% | |
| GGGGCAATTGGAATTGGAGC+TGG | + | chr2_2:12538951-12538970 | Msa0238720:CDS | 55.0% | |
| GCTACTGCACCAGTCACATG+TGG | + | chr2_2:12538999-12539018 | Msa0238720:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 12537558 | 12539354 | 12537558 | ID=Msa0238720;Name=Msa0238720 |
| chr2_2 | mRNA | 12537558 | 12539354 | 12537558 | ID=Msa0238720-mRNA-1;Parent=Msa0238720;Name=Msa0238720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=13|1|1|1|1|1|3|302|320 |
| chr2_2 | exon | 12537558 | 12538360 | 12537558 | ID=Msa0238720-mRNA-1:exon:5278;Parent=Msa0238720-mRNA-1 |
| chr2_2 | exon | 12538776 | 12538820 | 12538776 | ID=Msa0238720-mRNA-1:exon:5279;Parent=Msa0238720-mRNA-1 |
| chr2_2 | exon | 12538925 | 12539354 | 12538925 | ID=Msa0238720-mRNA-1:exon:5280;Parent=Msa0238720-mRNA-1 |
| chr2_2 | five_prime_UTR | 12537558 | 12537570 | 12537558 | ID=Msa0238720-mRNA-1:five_prime_utr;Parent=Msa0238720-mRNA-1 |
| chr2_2 | CDS | 12537571 | 12538360 | 12537571 | ID=Msa0238720-mRNA-1:cds;Parent=Msa0238720-mRNA-1 |
| chr2_2 | CDS | 12538776 | 12538820 | 12538776 | ID=Msa0238720-mRNA-1:cds;Parent=Msa0238720-mRNA-1 |
| chr2_2 | CDS | 12538925 | 12539052 | 12538925 | ID=Msa0238720-mRNA-1:cds;Parent=Msa0238720-mRNA-1 |
| chr2_2 | three_prime_UTR | 12539053 | 12539354 | 12539053 | ID=Msa0238720-mRNA-1:three_prime_utr;Parent=Msa0238720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
