Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317650 | XP_003594402.2 | 97.581 | 496 | 9 | 2 | 1 | 494 | 1 | 495 | 0.0 | 983 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317650 | sp|O80588|EDE1_ARATH | 48.000 | 225 | 116 | 1 | 260 | 484 | 243 | 466 | 1.69e-65 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0198010 | Msa0317650 | 0.966277 | 1.046353e-125 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317650 | MtrunA17_Chr2g0291221 | 97.581 | 496 | 9 | 2 | 1 | 494 | 1 | 495 | 0.0 | 983 |
| Msa0317650 | MtrunA17_Chr1g0207481 | 40.488 | 205 | 122 | 0 | 275 | 479 | 406 | 610 | 1.31e-45 | 168 |
| Msa0317650 | MtrunA17_Chr4g0073681 | 39.130 | 207 | 126 | 0 | 273 | 479 | 403 | 609 | 3.13e-42 | 159 |
| Msa0317650 | MtrunA17_Chr1g0152681 | 36.364 | 209 | 133 | 0 | 274 | 482 | 408 | 616 | 2.05e-36 | 142 |
| Msa0317650 | MtrunA17_Chr3g0079101 | 30.435 | 207 | 143 | 1 | 273 | 478 | 161 | 367 | 4.71e-23 | 100 |
| Msa0317650 | MtrunA17_Chr2g0323821 | 28.283 | 198 | 142 | 0 | 282 | 479 | 286 | 483 | 8.01e-21 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317650 | AT2G44190.1 | 48.000 | 225 | 116 | 1 | 260 | 484 | 243 | 466 | 1.71e-66 | 222 |
| Msa0317650 | AT3G19570.2 | 39.806 | 206 | 124 | 0 | 274 | 479 | 436 | 641 | 9.24e-48 | 175 |
| Msa0317650 | AT3G19570.1 | 39.894 | 188 | 113 | 0 | 274 | 461 | 436 | 623 | 4.47e-42 | 159 |
| Msa0317650 | AT4G30710.3 | 40.291 | 206 | 122 | 1 | 273 | 478 | 416 | 620 | 4.69e-42 | 159 |
| Msa0317650 | AT4G30710.1 | 40.291 | 206 | 122 | 1 | 273 | 478 | 416 | 620 | 4.69e-42 | 159 |
| Msa0317650 | AT4G30710.2 | 39.320 | 206 | 124 | 1 | 273 | 478 | 416 | 620 | 1.87e-40 | 154 |
| Msa0317650 | AT1G49890.1 | 38.462 | 208 | 128 | 0 | 275 | 482 | 442 | 649 | 1.35e-37 | 146 |
| Msa0317650 | AT4G30710.4 | 38.579 | 197 | 120 | 1 | 273 | 469 | 416 | 611 | 2.54e-36 | 142 |
| Msa0317650 | AT2G24070.1 | 33.200 | 250 | 160 | 2 | 229 | 478 | 342 | 584 | 3.50e-35 | 139 |
| Msa0317650 | AT2G24070.3 | 33.200 | 250 | 160 | 2 | 229 | 478 | 342 | 584 | 3.50e-35 | 139 |
| Msa0317650 | AT2G24070.2 | 33.200 | 250 | 160 | 2 | 229 | 478 | 342 | 584 | 3.50e-35 | 139 |
| Msa0317650 | AT3G19570.4 | 41.401 | 157 | 92 | 0 | 274 | 430 | 436 | 592 | 3.83e-33 | 133 |
| Msa0317650 | AT3G19570.3 | 41.401 | 157 | 92 | 0 | 274 | 430 | 436 | 592 | 3.83e-33 | 133 |
| Msa0317650 | AT5G43160.1 | 34.361 | 227 | 144 | 3 | 255 | 480 | 39 | 261 | 1.26e-27 | 111 |
| Msa0317650 | AT5G43160.2 | 34.361 | 227 | 144 | 3 | 255 | 480 | 39 | 261 | 1.26e-27 | 111 |
| Msa0317650 | AT4G25190.1 | 30.928 | 194 | 134 | 0 | 285 | 478 | 195 | 388 | 8.39e-23 | 100 |
| Msa0317650 | AT4G25190.2 | 30.457 | 197 | 132 | 2 | 285 | 478 | 195 | 389 | 3.23e-21 | 95.9 |
| Msa0317650 | AT2G20815.4 | 27.500 | 240 | 164 | 3 | 241 | 480 | 165 | 394 | 3.10e-16 | 81.3 |
| Msa0317650 | AT2G20815.1 | 27.320 | 194 | 141 | 0 | 287 | 480 | 278 | 471 | 1.15e-15 | 79.7 |
| Msa0317650 | AT2G20815.3 | 27.179 | 195 | 141 | 1 | 287 | 480 | 278 | 472 | 8.79e-15 | 77.0 |
| Msa0317650 | AT2G20815.2 | 27.179 | 195 | 141 | 1 | 287 | 480 | 249 | 443 | 1.08e-14 | 76.6 |
Find 142 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGTTAGTTTGAGTTCTTC+TGG | 0.177672 | 2_4:-15559947 | Msa0317650:CDS |
| TCAAAGAATCTACAAATAAT+AGG | 0.182462 | 2_4:-15560408 | Msa0317650:CDS |
| TAACCTTTGGCATTAATCTT+TGG | 0.191269 | 2_4:+15557827 | None:intergenic |
| TTATCCATTTATTGAGAAAA+AGG | 0.198470 | 2_4:-15557078 | Msa0317650:three_prime_UTR |
| TTCTTCAGCTGCTACGAAAT+TGG | 0.223111 | 2_4:-15560182 | Msa0317650:CDS |
| GAGCTGACTTCACGGGTTCT+TGG | 0.234344 | 2_4:+15560571 | None:intergenic |
| ATGAAATGTTTGCTTCAAAT+AGG | 0.237835 | 2_4:-15556864 | Msa0317650:three_prime_UTR |
| TGAGAATGAGAATGAGAATT+AGG | 0.239309 | 2_4:+15560364 | None:intergenic |
| AACCTTTGGCATTAATCTTT+GGG | 0.288094 | 2_4:+15557828 | None:intergenic |
| GGTGGCGGCGGAGGCGGTGG+AGG | 0.293972 | 2_4:+15560610 | None:intergenic |
| TTCTATCAATGAAGCAATTC+AGG | 0.294092 | 2_4:-15558068 | Msa0317650:CDS |
| TTCCAACTGGTGGGAATGTT+AGG | 0.294542 | 2_4:-15558021 | Msa0317650:CDS |
| ACAGAAATTGTTGGAGTATC+AGG | 0.295371 | 2_4:+15560271 | None:intergenic |
| TGACATCCGGTGAGTGAAAC+AGG | 0.295986 | 2_4:+15556923 | None:intergenic |
| GCAATTACAGATTCCATATC+TGG | 0.308033 | 2_4:-15558125 | Msa0317650:intron |
| CAAAGAATCTACAAATAATA+GGG | 0.313875 | 2_4:-15560407 | Msa0317650:CDS |
| GAGCTTCAAGAACTATTGAT+AGG | 0.314152 | 2_4:+15558246 | None:intergenic |
| CTTGGGCGGCGGTTGTTTGT+TGG | 0.320582 | 2_4:+15560589 | None:intergenic |
| GAGAATGAGAATTAGGGTTT+GGG | 0.323810 | 2_4:+15560371 | None:intergenic |
| GACCATGCTAAATACTAAAT+AGG | 0.329336 | 2_4:+15556962 | None:intergenic |
| TGAGAATGAGAATTAGGGTT+TGG | 0.332044 | 2_4:+15560370 | None:intergenic |
| ACACATTTGATTCTGTTGAT+AGG | 0.332539 | 2_4:-15557154 | Msa0317650:three_prime_UTR |
| AGCTGACTTCACGGGTTCTT+GGG | 0.332819 | 2_4:+15560572 | None:intergenic |
| TGGCATTAATCTTTGGGTAT+TGG | 0.344148 | 2_4:+15557834 | None:intergenic |
| GCTTCAAATAGGGACAAATT+TGG | 0.350036 | 2_4:-15556853 | Msa0317650:three_prime_UTR |
| TTTCATTATTCTTATTTGTA+TGG | 0.350557 | 2_4:+15557218 | None:intergenic |
| CGGTTAGTTTGAGTTCTTCT+GGG | 0.362620 | 2_4:-15559946 | Msa0317650:CDS |
| GAGAATGAGAATGAGAATTA+GGG | 0.363137 | 2_4:+15560365 | None:intergenic |
| TGAAATGTTTGCTTCAAATA+GGG | 0.368682 | 2_4:-15556863 | Msa0317650:three_prime_UTR |
| TTGAATGTAGTTGAATTAGT+TGG | 0.373137 | 2_4:+15557245 | None:intergenic |
| TCACTCTCGGAACGCAGTTC+AGG | 0.373502 | 2_4:+15560061 | None:intergenic |
| TTCTGGGATTGATCATTTGT+TGG | 0.374550 | 2_4:-15559930 | Msa0317650:CDS |
| GGCGGCGGAGGCGGTGGAGG+GGG | 0.376506 | 2_4:+15560613 | None:intergenic |
| TGTTGTTTGTGATGTTTGTT+TGG | 0.378057 | 2_4:+15560792 | None:intergenic |
| TTTGTTGGTGGCGGCGGAGG+CGG | 0.392098 | 2_4:+15560604 | None:intergenic |
| ATTGATCATTTGTTGGTAAG+AGG | 0.394111 | 2_4:-15559923 | Msa0317650:CDS |
| TCGATGAGTGGTGGAGGCAG+AGG | 0.394339 | 2_4:+15560534 | None:intergenic |
| TGGTGTTGTTGGTGATGATT+TGG | 0.396800 | 2_4:+15560226 | None:intergenic |
| GTTGGTGGCGGCGGAGGCGG+TGG | 0.396863 | 2_4:+15560607 | None:intergenic |
| TCACACTCACATGATGATAT+TGG | 0.401711 | 2_4:-15560109 | Msa0317650:CDS |
| TGAATGTAGTTGAATTAGTT+GGG | 0.404172 | 2_4:+15557246 | None:intergenic |
| CGTCGGAATCGTCACGTTGT+TGG | 0.409337 | 2_4:+15560509 | None:intergenic |
| TTGGTTTCTTGCATCGTGTT+TGG | 0.414522 | 2_4:+15560664 | None:intergenic |
| TGGCGGCGGAGGCGGTGGAG+GGG | 0.415170 | 2_4:+15560612 | None:intergenic |
| ATTCTTGAAGTTGTTGACTT+AGG | 0.416372 | 2_4:+15560334 | None:intergenic |
| CGGTTGTTTGTTGGTGGCGG+CGG | 0.417258 | 2_4:+15560598 | None:intergenic |
| TTGTTTGTTGGTGGCGGCGG+AGG | 0.419933 | 2_4:+15560601 | None:intergenic |
| GTTCCGAGAGTGATAGTGAT+AGG | 0.421821 | 2_4:-15560051 | Msa0317650:CDS |
| TTCTGAAAAGAATAACCAAT+TGG | 0.425342 | 2_4:+15560463 | None:intergenic |
| GTGGCGGCGGAGGCGGTGGA+GGG | 0.425789 | 2_4:+15560611 | None:intergenic |
| TCCGAATCTTCATTTCCAAT+TGG | 0.433639 | 2_4:-15560478 | Msa0317650:CDS |
| AGGTGGAGGAGTGTAGCTTA+AGG | 0.434456 | 2_4:-15557270 | Msa0317650:CDS |
| GCAGACCACTCATCCAGATA+TGG | 0.442975 | 2_4:+15558112 | None:intergenic |
| TCTGAATTAGCCAGAGTTGT+TGG | 0.445993 | 2_4:-15557476 | Msa0317650:CDS |
| GAAGAAAGGGTCTAGTCATC+AGG | 0.448090 | 2_4:-15559819 | Msa0317650:CDS |
| TAATAACAATTTGTCGCGTT+CGG | 0.450247 | 2_4:-15559966 | Msa0317650:CDS |
| GGTGGAGGAGTGTAGCTTAA+GGG | 0.454192 | 2_4:-15557269 | Msa0317650:CDS |
| ACCAATTGGAAATGAAGATT+CGG | 0.457568 | 2_4:+15560477 | None:intergenic |
| AAGATGAGGAAGAAGAAGAA+TGG | 0.458822 | 2_4:+15560729 | None:intergenic |
| GTCGGAAACATTGACGGCGT+TGG | 0.459489 | 2_4:+15560645 | None:intergenic |
| CTTGAAGTTGTTGACTTAGG+AGG | 0.460898 | 2_4:+15560337 | None:intergenic |
| GGGCGGCGGTTGTTTGTTGG+TGG | 0.462528 | 2_4:+15560592 | None:intergenic |
| CGATGAGTGGTGGAGGCAGA+GGG | 0.467478 | 2_4:+15560535 | None:intergenic |
| CGGCGGTTGTTTGTTGGTGG+CGG | 0.470831 | 2_4:+15560595 | None:intergenic |
| CGCATTGACCGCTCTCGCAT+TGG | 0.472851 | 2_4:+15559742 | None:intergenic |
| ATCTCTGAATTCAGCGCTAA+AGG | 0.473609 | 2_4:-15557875 | Msa0317650:CDS |
| CTCGACGAAACAGAAATTGT+TGG | 0.477715 | 2_4:+15560262 | None:intergenic |
| CCTTTCCTCGTATCCACCAC+AGG | 0.479630 | 2_4:+15559842 | None:intergenic |
| ACCACAGGTTTCGCAAATTG+TGG | 0.486841 | 2_4:+15559857 | None:intergenic |
| GCCTCAGTACGACTTCCAAC+TGG | 0.492734 | 2_4:-15558034 | Msa0317650:CDS |
| TGAATCTGGAGCTGACTTCA+CGG | 0.493642 | 2_4:+15560563 | None:intergenic |
| TTCGCAAATTGTGGAGCCAC+CGG | 0.496644 | 2_4:+15559866 | None:intergenic |
| TTGATCATTTGTTGGTAAGA+GGG | 0.498432 | 2_4:-15559922 | Msa0317650:CDS |
| TGCTTCTGTTTCAAAGCCGC+CGG | 0.500060 | 2_4:-15559885 | Msa0317650:CDS |
| GGATCCGTGGCTGAAAAGAT+TGG | 0.500461 | 2_4:-15559989 | Msa0317650:CDS |
| TAATAGACCTATGGTGTTGT+TGG | 0.502974 | 2_4:+15560215 | None:intergenic |
| TCTCTCCCTGTTTCACTCAC+CGG | 0.505557 | 2_4:-15556929 | Msa0317650:three_prime_UTR |
| CAGGTTGATGTAAGAGAGGT+GGG | 0.513674 | 2_4:-15557901 | Msa0317650:CDS |
| GAATTCAGCGCTAAAGGTGA+TGG | 0.521311 | 2_4:-15557869 | Msa0317650:CDS |
| ACCCTAACATTCCCACCAGT+TGG | 0.523927 | 2_4:+15558019 | None:intergenic |
| ATGAGTGGTGGAGGCAGAGG+GGG | 0.525153 | 2_4:+15560537 | None:intergenic |
| AGGGTTGTCGGAAACATTGA+CGG | 0.525303 | 2_4:+15560639 | None:intergenic |
| TCTTTCTCCTCCAACAACTC+TGG | 0.526227 | 2_4:+15557466 | None:intergenic |
| TTTATAATCGGTATCTGCAA+TGG | 0.526466 | 2_4:-15559772 | Msa0317650:CDS |
| TTGAAGTTGTTGACTTAGGA+GGG | 0.526929 | 2_4:+15560338 | None:intergenic |
| AGCTTCAAGAACTATTGATA+GGG | 0.529000 | 2_4:+15558247 | None:intergenic |
| GATACGAGGAAAGGGAAGAA+AGG | 0.529493 | 2_4:-15559833 | Msa0317650:CDS |
| TCTGGATGAGTGGTCTGCTA+TGG | 0.531196 | 2_4:-15558107 | Msa0317650:CDS |
| TGTTTGTTTGGAGAGTGTGT+GGG | 0.535878 | 2_4:+15560804 | None:intergenic |
| ATGTTTGTTTGGAGAGTGTG+TGG | 0.535932 | 2_4:+15560803 | None:intergenic |
| CTTCACGGGTTCTTGGGCGG+CGG | 0.539612 | 2_4:+15560578 | None:intergenic |
| GAATCTGGAGCTGACTTCAC+GGG | 0.542012 | 2_4:+15560564 | None:intergenic |
| CTCCCTATCACTATCACTCT+CGG | 0.544053 | 2_4:+15560048 | None:intergenic |
| TCCAACTGGTGGGAATGTTA+GGG | 0.545488 | 2_4:-15558020 | Msa0317650:intron |
| GTGAATTGCTAATAGACCTA+TGG | 0.549329 | 2_4:+15560206 | None:intergenic |
| TTCTGTTTCAAAGCCGCCGG+TGG | 0.553326 | 2_4:-15559882 | Msa0317650:CDS |
| GAATTAGCCAGAGTTGTTGG+AGG | 0.554021 | 2_4:-15557473 | Msa0317650:CDS |
| TTCTGTATTCTTATCAGTGT+AGG | 0.554718 | 2_4:-15556991 | Msa0317650:three_prime_UTR |
| GTCGAAGACACATAAGTCAC+AGG | 0.562104 | 2_4:-15557414 | Msa0317650:intron |
| AGCAAACATTTCATCATGCA+AGG | 0.567432 | 2_4:+15556873 | None:intergenic |
| AGCCTATTTAGTATTTAGCA+TGG | 0.570491 | 2_4:-15556964 | Msa0317650:three_prime_UTR |
| GGTTGATGTAAGAGAGGTGG+GGG | 0.575836 | 2_4:-15557899 | Msa0317650:CDS |
| TTCCGAGAGTGATAGTGATA+GGG | 0.576636 | 2_4:-15560050 | Msa0317650:CDS |
| CTGTGGTGGATACGAGGAAA+GGG | 0.580025 | 2_4:-15559841 | Msa0317650:CDS |
| AGGTCTTGAAGCACAAGGAG+TGG | 0.580164 | 2_4:+15560291 | None:intergenic |
| GCTTAGAACTTGAGCTTCTG+CGG | 0.588384 | 2_4:-15558280 | Msa0317650:CDS |
| AAATGCGCGATTCTGTGCAC+AGG | 0.589437 | 2_4:-15558307 | Msa0317650:CDS |
| ACGTTGTTGGCGTCGATGAG+TGG | 0.590653 | 2_4:+15560522 | None:intergenic |
| ATTTGAGTGACAGAAAGATG+AGG | 0.591570 | 2_4:+15560715 | None:intergenic |
| GCAAATTGTGGAGCCACCGG+CGG | 0.592460 | 2_4:+15559869 | None:intergenic |
| ACAGGTTGATGTAAGAGAGG+TGG | 0.592542 | 2_4:-15557902 | Msa0317650:intron |
| CAGCAATCTAATGTGAACAA+TGG | 0.594890 | 2_4:-15560010 | Msa0317650:CDS |
| TACCCAAAGATTAATGCCAA+AGG | 0.599367 | 2_4:-15557830 | Msa0317650:intron |
| ATACGAGGAAAGGGAAGAAA+GGG | 0.601091 | 2_4:-15559832 | Msa0317650:CDS |
| ATCATTACCCAAAACCTCAA+CGG | 0.603329 | 2_4:-15560766 | Msa0317650:five_prime_UTR |
| CGAAACCTGTGGTGGATACG+AGG | 0.605001 | 2_4:-15559847 | Msa0317650:CDS |
| AGAATGAGAATTAGGGTTTG+GGG | 0.606796 | 2_4:+15560372 | None:intergenic |
| TCAGTACGACTTCCAACTGG+TGG | 0.607617 | 2_4:-15558031 | Msa0317650:CDS |
| AGTGTCAATTCATTGTCAAG+AGG | 0.608236 | 2_4:-15560151 | Msa0317650:CDS |
| TTGGCGTCGATGAGTGGTGG+AGG | 0.608600 | 2_4:+15560528 | None:intergenic |
| CCTGTGGTGGATACGAGGAA+AGG | 0.615055 | 2_4:-15559842 | Msa0317650:CDS |
| TGATGATTCAATTGCAACTG+TGG | 0.615595 | 2_4:-15557184 | Msa0317650:three_prime_UTR |
| GAGATTTGCCAATGCGAGAG+CGG | 0.620919 | 2_4:-15559750 | Msa0317650:CDS |
| AGATTCCATATCTGGATGAG+TGG | 0.627424 | 2_4:-15558117 | Msa0317650:CDS |
| GCCACAGGTTGATGTAAGAG+AGG | 0.628799 | 2_4:-15557905 | Msa0317650:intron |
| CGAGAGTGATAGTGATAGGG+AGG | 0.629316 | 2_4:-15560047 | Msa0317650:CDS |
| GACATCCGGTGAGTGAAACA+GGG | 0.635450 | 2_4:+15556924 | None:intergenic |
| ACAATTTGCGAAACCTGTGG+TGG | 0.636454 | 2_4:-15559855 | Msa0317650:CDS |
| TTGTTGGCGTCGATGAGTGG+TGG | 0.640867 | 2_4:+15560525 | None:intergenic |
| GATGAGTGGTGGAGGCAGAG+GGG | 0.644163 | 2_4:+15560536 | None:intergenic |
| ATCATCACCAACAACACCAT+AGG | 0.653442 | 2_4:-15560222 | Msa0317650:CDS |
| TGACTTCACGGGTTCTTGGG+CGG | 0.654213 | 2_4:+15560575 | None:intergenic |
| TGTTGGTAAGAGGGTCTGAG+AGG | 0.657044 | 2_4:-15559913 | Msa0317650:CDS |
| AGAGCTCTTATTGAAGAGTG+CGG | 0.664795 | 2_4:-15557446 | Msa0317650:CDS |
| TATCAACAGAATCAAATGTG+TGG | 0.665340 | 2_4:+15557156 | None:intergenic |
| CAGTACGACTTCCAACTGGT+GGG | 0.671503 | 2_4:-15558030 | Msa0317650:CDS |
| ACCAGTTGGAAGTCGTACTG+AGG | 0.677338 | 2_4:+15558033 | None:intergenic |
| GCTCTTATTGAAGAGTGCGG+AGG | 0.680445 | 2_4:-15557443 | Msa0317650:CDS |
| TCCACAATTTGCGAAACCTG+TGG | 0.690401 | 2_4:-15559858 | Msa0317650:CDS |
| GTATCAGGTCTTGAAGCACA+AGG | 0.706581 | 2_4:+15560286 | None:intergenic |
| TAATGTGAACAATGGATCCG+TGG | 0.709448 | 2_4:-15560002 | Msa0317650:CDS |
| AGGTTGATGTAAGAGAGGTG+GGG | 0.716696 | 2_4:-15557900 | Msa0317650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAAATATACTTTTCA+TGG | + | chr2_4:15557993-15558012 | None:intergenic | 10.0% |
| !! | TGATTAAAAAAAAAAAAACT+TGG | - | chr2_4:15558842-15558861 | Msa0317650:intron | 10.0% |
| !! | ATGATTGTTTAATTATATGA+AGG | - | chr2_4:15558134-15558153 | Msa0317650:intron | 15.0% |
| !! | TTTAATTATATGAAGGATTA+CGG | - | chr2_4:15558141-15558160 | Msa0317650:intron | 15.0% |
| !!! | GCAAAATTTTATTAAAATTC+AGG | + | chr2_4:15558822-15558841 | None:intergenic | 15.0% |
| !!! | AAGTAATTTGTATATTGTTT+TGG | - | chr2_4:15559430-15559449 | Msa0317650:intron | 15.0% |
| !!! | TTTCATTATTCTTATTTGTA+TGG | + | chr2_4:15560365-15560384 | None:intergenic | 15.0% |
| !! | AAAACAAAAAAATTGCATAT+TGG | + | chr2_4:15560548-15560567 | None:intergenic | 15.0% |
| !! | TCAAAGAATCTACAAATAAT+AGG | - | chr2_4:15557172-15557191 | Msa0317650:three_prime_UTR | 20.0% |
| !! | CAAAGAATCTACAAATAATA+GGG | - | chr2_4:15557173-15557192 | Msa0317650:three_prime_UTR | 20.0% |
| !!! | CACTTAGAATGTTTTATAAT+CGG | - | chr2_4:15557796-15557815 | Msa0317650:intron | 20.0% |
| !! | ATAGTTAGATAGATAGTTAT+AGG | - | chr2_4:15558012-15558031 | Msa0317650:intron | 20.0% |
| !!! | CATTTTTATTGTTACATTGA+GGG | + | chr2_4:15558521-15558540 | None:intergenic | 20.0% |
| !! | AATGTAACAATAAAAATGCA+AGG | - | chr2_4:15558523-15558542 | Msa0317650:intron | 20.0% |
| !! | ATGTAACAATAAAAATGCAA+GGG | - | chr2_4:15558524-15558543 | Msa0317650:intron | 20.0% |
| !! | TGTGCAAGAAATTATTTAAA+AGG | - | chr2_4:15558568-15558587 | Msa0317650:intron | 20.0% |
| !! | AAAGATGCATAATTTGAATT+TGG | - | chr2_4:15558625-15558644 | Msa0317650:intron | 20.0% |
| !! | TTATCCATTTATTGAGAAAA+AGG | - | chr2_4:15560502-15560521 | Msa0317650:CDS | 20.0% |
| !! | TATCCATTTATTGAGAAAAA+GGG | - | chr2_4:15560503-15560522 | Msa0317650:CDS | 20.0% |
| ! | GAAGAATGGAAAGAAAAAAA+TGG | + | chr2_4:15556840-15556859 | None:intergenic | 25.0% |
| !! | TTCTGAAAAGAATAACCAAT+TGG | + | chr2_4:15557120-15557139 | None:intergenic | 25.0% |
| !!! | GTTGTTTAGATTTTATTTCC+TGG | - | chr2_4:15557892-15557911 | Msa0317650:CDS | 25.0% |
| !! | CTGTTATTTGATAAGAGATA+GGG | - | chr2_4:15558082-15558101 | Msa0317650:CDS | 25.0% |
| !! | TGTTATTTGATAAGAGATAG+GGG | - | chr2_4:15558083-15558102 | Msa0317650:CDS | 25.0% |
| !! | GAATGTGATTGTTAACATTT+TGG | + | chr2_4:15558228-15558247 | None:intergenic | 25.0% |
| ! | TTGTTAAACAACCAGAAAAT+TGG | - | chr2_4:15558293-15558312 | Msa0317650:CDS | 25.0% |
| ! | AGTAACAGTACTAATAGTTA+GGG | + | chr2_4:15558414-15558433 | None:intergenic | 25.0% |
| ! | AAGTAACAGTACTAATAGTT+AGG | + | chr2_4:15558415-15558434 | None:intergenic | 25.0% |
| ! | TAACTATTAGTACTGTTACT+TGG | - | chr2_4:15558414-15558433 | Msa0317650:intron | 25.0% |
| ! | ACAGTAGTTATGTAAGAATT+AGG | - | chr2_4:15558485-15558504 | Msa0317650:intron | 25.0% |
| !! | GCATTTTTATTGTTACATTG+AGG | + | chr2_4:15558522-15558541 | None:intergenic | 25.0% |
| ! | TGTAACAATAAAAATGCAAG+GGG | - | chr2_4:15558525-15558544 | Msa0317650:intron | 25.0% |
| ! | CATCACATCTTCATTTATAT+TGG | - | chr2_4:15558980-15558999 | Msa0317650:intron | 25.0% |
| ! | TTCATTTATATTGGTCATCA+CGG | - | chr2_4:15558989-15559008 | Msa0317650:intron | 25.0% |
| ! | TTTCAAATTATACTCCAGTA+AGG | - | chr2_4:15559021-15559040 | Msa0317650:intron | 25.0% |
| !!! | AAAGAAGCATTCAAAATCAT+TGG | + | chr2_4:15559371-15559390 | None:intergenic | 25.0% |
| ! | AATGAATAAGTATGGAAGAA+AGG | + | chr2_4:15559615-15559634 | None:intergenic | 25.0% |
| ! | TTTCTTCCATACTTATTCAT+TGG | - | chr2_4:15559614-15559633 | Msa0317650:intron | 25.0% |
| ! | TTCTTCCATACTTATTCATT+GGG | - | chr2_4:15559615-15559634 | Msa0317650:intron | 25.0% |
| !!! | TGGATTGGATTATAATGTTT+TGG | - | chr2_4:15559886-15559905 | Msa0317650:CDS | 25.0% |
| !!! | AAAGTTTTTTCAAAAACACC+AGG | - | chr2_4:15560058-15560077 | Msa0317650:CDS | 25.0% |
| ! | TGATTAATATTATGAAGTGC+TGG | + | chr2_4:15560271-15560290 | None:intergenic | 25.0% |
| ! | AGCACTTCATAATATTAATC+AGG | - | chr2_4:15560270-15560289 | Msa0317650:CDS | 25.0% |
| ! | TGAATGTAGTTGAATTAGTT+GGG | + | chr2_4:15560337-15560356 | None:intergenic | 25.0% |
| ! | TTGAATGTAGTTGAATTAGT+TGG | + | chr2_4:15560338-15560357 | None:intergenic | 25.0% |
| ! | ATCCATTTATTGAGAAAAAG+GGG | - | chr2_4:15560504-15560523 | Msa0317650:CDS | 25.0% |
| !!! | TTTTTGTTTTTTGCTATCTC+AGG | - | chr2_4:15560558-15560577 | Msa0317650:CDS | 25.0% |
| ! | TGTCAATAGAAAAAAGGAAT+AGG | - | chr2_4:15560675-15560694 | Msa0317650:exon | 25.0% |
| ! | ATGAAATGTTTGCTTCAAAT+AGG | - | chr2_4:15560716-15560735 | Msa0317650:five_prime_UTR | 25.0% |
| ! | TGAAATGTTTGCTTCAAATA+GGG | - | chr2_4:15560717-15560736 | Msa0317650:five_prime_UTR | 25.0% |
| ! | CACAAAAATGAAAGTTCAAA+AGG | + | chr2_4:15560760-15560779 | None:intergenic | 25.0% |
| ! | TGTTGTTTGTGATGTTTGTT+TGG | + | chr2_4:15556791-15556810 | None:intergenic | 30.0% |
| ACCAATTGGAAATGAAGATT+CGG | + | chr2_4:15557106-15557125 | None:intergenic | 30.0% | |
| GAGAATGAGAATGAGAATTA+GGG | + | chr2_4:15557218-15557237 | None:intergenic | 30.0% | |
| TGAGAATGAGAATGAGAATT+AGG | + | chr2_4:15557219-15557238 | None:intergenic | 30.0% | |
| !! | ATTCTTGAAGTTGTTGACTT+AGG | + | chr2_4:15557249-15557268 | None:intergenic | 30.0% |
| TAATAACAATTTGTCGCGTT+CGG | - | chr2_4:15557614-15557633 | Msa0317650:intron | 30.0% | |
| ! | ATTGATCATTTGTTGGTAAG+AGG | - | chr2_4:15557657-15557676 | Msa0317650:intron | 30.0% |
| ! | TTGATCATTTGTTGGTAAGA+GGG | - | chr2_4:15557658-15557677 | Msa0317650:intron | 30.0% |
| TTTATAATCGGTATCTGCAA+TGG | - | chr2_4:15557808-15557827 | Msa0317650:intron | 30.0% | |
| !! | CTTTTCATGGTATTTTCAAG+CGG | + | chr2_4:15557980-15557999 | None:intergenic | 30.0% |
| ! | GCTGTTATTTGATAAGAGAT+AGG | - | chr2_4:15558081-15558100 | Msa0317650:CDS | 30.0% |
| ! | TTGTGAAGTATCTTTCTAAC+GGG | + | chr2_4:15558205-15558224 | None:intergenic | 30.0% |
| ! | GTTGTGAAGTATCTTTCTAA+CGG | + | chr2_4:15558206-15558225 | None:intergenic | 30.0% |
| ACAATAATTTCACGAGTCTA+TGG | + | chr2_4:15558277-15558296 | None:intergenic | 30.0% | |
| TATACAACTCTACCTCTAAT+AGG | - | chr2_4:15558330-15558349 | Msa0317650:CDS | 30.0% | |
| CATCATTTAGTACCTATTAG+AGG | + | chr2_4:15558345-15558364 | None:intergenic | 30.0% | |
| CTCTAATAGGTACTAAATGA+TGG | - | chr2_4:15558343-15558362 | Msa0317650:CDS | 30.0% | |
| ! | TAGGTACTAAATGATGGAAT+TGG | - | chr2_4:15558349-15558368 | Msa0317650:intron | 30.0% |
| TAAGATATTGCCTCAATTTG+TGG | + | chr2_4:15558388-15558407 | None:intergenic | 30.0% | |
| ! | TAGTACTGTTACTTGGAAAT+TGG | - | chr2_4:15558421-15558440 | Msa0317650:intron | 30.0% |
| ! | CAAATTATGCATCTTTTGTG+AGG | + | chr2_4:15558621-15558640 | None:intergenic | 30.0% |
| AAGTAAGATTATGAACTGTC+TGG | + | chr2_4:15558694-15558713 | None:intergenic | 30.0% | |
| AACTCAACAAGAGGAATAAA+TGG | + | chr2_4:15558721-15558740 | None:intergenic | 30.0% | |
| TTATTCCTCTTGTTGAGTTA+AGG | - | chr2_4:15558722-15558741 | Msa0317650:intron | 30.0% | |
| TATTCCTCTTGTTGAGTTAA+GGG | - | chr2_4:15558723-15558742 | Msa0317650:intron | 30.0% | |
| CGAGTCTTGATTTATAAGAA+GGG | - | chr2_4:15558750-15558769 | Msa0317650:intron | 30.0% | |
| GAGTCTTGATTTATAAGAAG+GGG | - | chr2_4:15558751-15558770 | Msa0317650:intron | 30.0% | |
| AGTCTTGATTTATAAGAAGG+GGG | - | chr2_4:15558752-15558771 | Msa0317650:intron | 30.0% | |
| ATTACAATGCATAAGCAACT+TGG | - | chr2_4:15558782-15558801 | Msa0317650:intron | 30.0% | |
| !!! | TAAGGTTTAAGTGGCTTTTT+TGG | - | chr2_4:15559039-15559058 | Msa0317650:intron | 30.0% |
| TTTGGATAAGTACCAAACTT+AGG | - | chr2_4:15559057-15559076 | Msa0317650:intron | 30.0% | |
| TGTTTACATTCACTTTCACT+TGG | - | chr2_4:15559126-15559145 | Msa0317650:intron | 30.0% | |
| AGCTTCAAGAACTATTGATA+GGG | + | chr2_4:15559336-15559355 | None:intergenic | 30.0% | |
| TTCTATCAATGAAGCAATTC+AGG | - | chr2_4:15559512-15559531 | Msa0317650:intron | 30.0% | |
| ACTATCCCAATGAATAAGTA+TGG | + | chr2_4:15559623-15559642 | None:intergenic | 30.0% | |
| ATTAAAATGTCTAATGCCAC+AGG | - | chr2_4:15559660-15559679 | Msa0317650:intron | 30.0% | |
| AACCTTTGGCATTAATCTTT+GGG | + | chr2_4:15559755-15559774 | None:intergenic | 30.0% | |
| TAACCTTTGGCATTAATCTT+TGG | + | chr2_4:15559756-15559775 | None:intergenic | 30.0% | |
| TCTTTCATTTGTCTAACCTT+TGG | + | chr2_4:15559769-15559788 | None:intergenic | 30.0% | |
| TCTTGAGGTTATATGAAACT+TGG | - | chr2_4:15559866-15559885 | Msa0317650:CDS | 30.0% | |
| AGGTTATATGAAACTTGGAT+TGG | - | chr2_4:15559871-15559890 | Msa0317650:CDS | 30.0% | |
| ACTGACCAAAAAACATAGTA+GGG | + | chr2_4:15559929-15559948 | None:intergenic | 30.0% | |
| AACTGACCAAAAAACATAGT+AGG | + | chr2_4:15559930-15559949 | None:intergenic | 30.0% | |
| ! | TAACTTTCTCTAAGAGCAAA+AGG | - | chr2_4:15559959-15559978 | Msa0317650:CDS | 30.0% |
| CCACACATTATGAATGTTAT+AGG | + | chr2_4:15560006-15560025 | None:intergenic | 30.0% | |
| CCTATAACATTCATAATGTG+TGG | - | chr2_4:15560003-15560022 | Msa0317650:CDS | 30.0% | |
| !!! | AGGAAAGTGCTATATTTTTC+AGG | - | chr2_4:15560290-15560309 | Msa0317650:CDS | 30.0% |
| !!! | AAAGTGCTATATTTTTCAGG+TGG | - | chr2_4:15560293-15560312 | Msa0317650:CDS | 30.0% |
| TATCAACAGAATCAAATGTG+TGG | + | chr2_4:15560427-15560446 | None:intergenic | 30.0% | |
| ACACATTTGATTCTGTTGAT+AGG | - | chr2_4:15560426-15560445 | Msa0317650:CDS | 30.0% | |
| TGAAAGAAAAATGAATCTGC+AGG | + | chr2_4:15560476-15560495 | None:intergenic | 30.0% | |
| TTCTGTATTCTTATCAGTGT+AGG | - | chr2_4:15560589-15560608 | Msa0317650:CDS | 30.0% | |
| AGCCTATTTAGTATTTAGCA+TGG | - | chr2_4:15560616-15560635 | Msa0317650:CDS | 30.0% | |
| GACCATGCTAAATACTAAAT+AGG | + | chr2_4:15560621-15560640 | None:intergenic | 30.0% | |
| !!! | TCCTTTTTTCTATTGACATC+CGG | + | chr2_4:15560673-15560692 | None:intergenic | 30.0% |
| ATCATTACCCAAAACCTCAA+CGG | - | chr2_4:15556814-15556833 | Msa0317650:three_prime_UTR | 35.0% | |
| AAAGAAAAAAATGGCCGTTG+AGG | + | chr2_4:15556831-15556850 | None:intergenic | 35.0% | |
| AAGATGAGGAAGAAGAAGAA+TGG | + | chr2_4:15556854-15556873 | None:intergenic | 35.0% | |
| ATTTGAGTGACAGAAAGATG+AGG | + | chr2_4:15556868-15556887 | None:intergenic | 35.0% | |
| TCCGAATCTTCATTTCCAAT+TGG | - | chr2_4:15557102-15557121 | Msa0317650:three_prime_UTR | 35.0% | |
| AGAATGAGAATTAGGGTTTG+GGG | + | chr2_4:15557211-15557230 | None:intergenic | 35.0% | |
| GAGAATGAGAATTAGGGTTT+GGG | + | chr2_4:15557212-15557231 | None:intergenic | 35.0% | |
| TGAGAATGAGAATTAGGGTT+TGG | + | chr2_4:15557213-15557232 | None:intergenic | 35.0% | |
| !! | TTGAAGTTGTTGACTTAGGA+GGG | + | chr2_4:15557245-15557264 | None:intergenic | 35.0% |
| ! | ACAGAAATTGTTGGAGTATC+AGG | + | chr2_4:15557312-15557331 | None:intergenic | 35.0% |
| !! | TAATAGACCTATGGTGTTGT+TGG | + | chr2_4:15557368-15557387 | None:intergenic | 35.0% |
| GTGAATTGCTAATAGACCTA+TGG | + | chr2_4:15557377-15557396 | None:intergenic | 35.0% | |
| AGTGTCAATTCATTGTCAAG+AGG | - | chr2_4:15557429-15557448 | Msa0317650:CDS | 35.0% | |
| TCACACTCACATGATGATAT+TGG | - | chr2_4:15557471-15557490 | Msa0317650:CDS | 35.0% | |
| CAGCAATCTAATGTGAACAA+TGG | - | chr2_4:15557570-15557589 | Msa0317650:intron | 35.0% | |
| ! | ATTACCAATCTTTTCAGCCA+CGG | + | chr2_4:15557598-15557617 | None:intergenic | 35.0% |
| !! | TTCTGGGATTGATCATTTGT+TGG | - | chr2_4:15557650-15557669 | Msa0317650:intron | 35.0% |
| ! | GTTGTTACTTGTCAATAACC+AGG | + | chr2_4:15557913-15557932 | None:intergenic | 35.0% |
| TAGATAGTTATAGGAGTCTG+TGG | - | chr2_4:15558021-15558040 | Msa0317650:CDS | 35.0% | |
| ! | TGTGAAGTATCTTTCTAACG+GGG | + | chr2_4:15558204-15558223 | None:intergenic | 35.0% |
| ! | ACAACCAGAAAATTGGTTCT+TGG | - | chr2_4:15558300-15558319 | Msa0317650:CDS | 35.0% |
| ! | CAACCAGAAAATTGGTTCTT+GGG | - | chr2_4:15558301-15558320 | Msa0317650:CDS | 35.0% |
| ! | AGAAAATTGGTTCTTGGGAT+CGG | - | chr2_4:15558306-15558325 | Msa0317650:CDS | 35.0% |
| ATGGAATTGGAGATTAGAGA+AGG | - | chr2_4:15558362-15558381 | Msa0317650:intron | 35.0% | |
| TACTTGGAAATTGGTAGACA+TGG | - | chr2_4:15558430-15558449 | Msa0317650:intron | 35.0% | |
| ! | CTACTGTATAGTTTGCAACT+TGG | + | chr2_4:15558472-15558491 | None:intergenic | 35.0% |
| !!! | TTTTGTGAGGCACTGTTATA+AGG | + | chr2_4:15558608-15558627 | None:intergenic | 35.0% |
| GCGAGTCTTGATTTATAAGA+AGG | - | chr2_4:15558749-15558768 | Msa0317650:intron | 35.0% | |
| GTCTTGATTTATAAGAAGGG+GGG | - | chr2_4:15558753-15558772 | Msa0317650:intron | 35.0% | |
| TCTTGATTTATAAGAAGGGG+GGG | - | chr2_4:15558754-15558773 | Msa0317650:intron | 35.0% | |
| !! | AGTTTAGAACTGCTTTTGAG+TGG | + | chr2_4:15558923-15558942 | None:intergenic | 35.0% |
| ATACTCCAGTAAGGTTTAAG+TGG | - | chr2_4:15559030-15559049 | Msa0317650:intron | 35.0% | |
| AAAAGCCACTTAAACCTTAC+TGG | + | chr2_4:15559038-15559057 | None:intergenic | 35.0% | |
| GACACATTTGAACCTAAGTT+TGG | + | chr2_4:15559072-15559091 | None:intergenic | 35.0% | |
| ! | TTCTGACACGGTTTAAAATC+TGG | - | chr2_4:15559149-15559168 | Msa0317650:intron | 35.0% |
| ! | TCTGACACGGTTTAAAATCT+GGG | - | chr2_4:15559150-15559169 | Msa0317650:intron | 35.0% |
| !! | AAAGTGACAAGAAGAGCATT+AGG | + | chr2_4:15559193-15559212 | None:intergenic | 35.0% |
| AGAAAATAGTGCTTTCTGCA+AGG | + | chr2_4:15559234-15559253 | None:intergenic | 35.0% | |
| GAGCTTCAAGAACTATTGAT+AGG | + | chr2_4:15559337-15559356 | None:intergenic | 35.0% | |
| GCAATTACAGATTCCATATC+TGG | - | chr2_4:15559455-15559474 | Msa0317650:intron | 35.0% | |
| GGTATGATTAAAACTCCAAC+TGG | - | chr2_4:15559581-15559600 | Msa0317650:intron | 35.0% | |
| TGGCATTAATCTTTGGGTAT+TGG | + | chr2_4:15559749-15559768 | None:intergenic | 35.0% | |
| TACCCAAAGATTAATGCCAA+AGG | - | chr2_4:15559750-15559769 | Msa0317650:CDS | 35.0% | |
| CTGACCAAAAAACATAGTAG+GGG | + | chr2_4:15559928-15559947 | None:intergenic | 35.0% | |
| GCAAGCATTCTACATAAAAC+TGG | + | chr2_4:15560242-15560261 | None:intergenic | 35.0% | |
| TGATGATTCAATTGCAACTG+TGG | - | chr2_4:15560396-15560415 | Msa0317650:CDS | 35.0% | |
| ! | CTCCCCTTTTTCTCAATAAA+TGG | + | chr2_4:15560509-15560528 | None:intergenic | 35.0% |
| ACCGGATGTCAATAGAAAAA+AGG | - | chr2_4:15560669-15560688 | Msa0317650:exon | 35.0% | |
| AGCAAACATTTCATCATGCA+AGG | + | chr2_4:15560710-15560729 | None:intergenic | 35.0% | |
| GCTTCAAATAGGGACAAATT+TGG | - | chr2_4:15560727-15560746 | Msa0317650:five_prime_UTR | 35.0% | |
| ! | TGTTTGTTTGGAGAGTGTGT+GGG | + | chr2_4:15556779-15556798 | None:intergenic | 40.0% |
| ! | ATGTTTGTTTGGAGAGTGTG+TGG | + | chr2_4:15556780-15556799 | None:intergenic | 40.0% |
| ! | AAAATGGCCGTTGAGGTTTT+GGG | + | chr2_4:15556824-15556843 | None:intergenic | 40.0% |
| ! | AAAAATGGCCGTTGAGGTTT+TGG | + | chr2_4:15556825-15556844 | None:intergenic | 40.0% |
| TTGGTTTCTTGCATCGTGTT+TGG | + | chr2_4:15556919-15556938 | None:intergenic | 40.0% | |
| ! | AGATTCGGAATTTTCGTCGT+CGG | + | chr2_4:15557091-15557110 | None:intergenic | 40.0% |
| !! | CTTGAAGTTGTTGACTTAGG+AGG | + | chr2_4:15557246-15557265 | None:intergenic | 40.0% |
| CTCGACGAAACAGAAATTGT+TGG | + | chr2_4:15557321-15557340 | None:intergenic | 40.0% | |
| !! | TGGTGTTGTTGGTGATGATT+TGG | + | chr2_4:15557357-15557376 | None:intergenic | 40.0% |
| ATCATCACCAACAACACCAT+AGG | - | chr2_4:15557358-15557377 | Msa0317650:intron | 40.0% | |
| TTCTTCAGCTGCTACGAAAT+TGG | - | chr2_4:15557398-15557417 | Msa0317650:intron | 40.0% | |
| ! | TTCCGAGAGTGATAGTGATA+GGG | - | chr2_4:15557530-15557549 | Msa0317650:intron | 40.0% |
| TAATGTGAACAATGGATCCG+TGG | - | chr2_4:15557578-15557597 | Msa0317650:intron | 40.0% | |
| !! | TCGGTTAGTTTGAGTTCTTC+TGG | - | chr2_4:15557633-15557652 | Msa0317650:intron | 40.0% |
| !! | CGGTTAGTTTGAGTTCTTCT+GGG | - | chr2_4:15557634-15557653 | Msa0317650:intron | 40.0% |
| ATACGAGGAAAGGGAAGAAA+GGG | - | chr2_4:15557748-15557767 | Msa0317650:intron | 40.0% | |
| AGTTCAGCAAAAAGAATGCG+AGG | - | chr2_4:15557866-15557885 | Msa0317650:CDS | 40.0% | |
| CAATTCTCTGCTGAATTGTG+TGG | - | chr2_4:15558047-15558066 | Msa0317650:CDS | 40.0% | |
| AATACCACATGACTTCGCAT+CGG | + | chr2_4:15558109-15558128 | None:intergenic | 40.0% | |
| ! | GATCCCAAGAACCAATTTTC+TGG | + | chr2_4:15558307-15558326 | None:intergenic | 40.0% |
| TTAGAGAAGGCCACAAATTG+AGG | - | chr2_4:15558375-15558394 | Msa0317650:intron | 40.0% | |
| !! | AGGGGTACTTCTGTGATAAA+TGG | - | chr2_4:15558543-15558562 | Msa0317650:intron | 40.0% |
| !! | ACTTTCACTTGGTTCTGACA+CGG | - | chr2_4:15559137-15559156 | Msa0317650:intron | 40.0% |
| AGATTCCATATCTGGATGAG+TGG | - | chr2_4:15559463-15559482 | Msa0317650:intron | 40.0% | |
| AGAAAGGAAATAGTGCCAGT+TGG | + | chr2_4:15559599-15559618 | None:intergenic | 40.0% | |
| ATCTCTGAATTCAGCGCTAA+AGG | - | chr2_4:15559705-15559724 | Msa0317650:intron | 40.0% | |
| TTCGCTTCAAACCATCAGTT+TGG | - | chr2_4:15559820-15559839 | Msa0317650:CDS | 40.0% | |
| ACCATCAGTTTGGTATTCCA+TGG | - | chr2_4:15559830-15559849 | Msa0317650:CDS | 40.0% | |
| ACCATGGAATACCAAACTGA+TGG | + | chr2_4:15559834-15559853 | None:intergenic | 40.0% | |
| CAAAAAACATAGTAGGGGTG+AGG | + | chr2_4:15559923-15559942 | None:intergenic | 40.0% | |
| !!! | CTCACCCCTACTATGTTTTT+TGG | - | chr2_4:15559921-15559940 | Msa0317650:CDS | 40.0% |
| ! | AAGTATCTGTTTCTTCTGCC+TGG | + | chr2_4:15560079-15560098 | None:intergenic | 40.0% |
| TCTGAATTAGCCAGAGTTGT+TGG | - | chr2_4:15560104-15560123 | Msa0317650:CDS | 40.0% | |
| AGAGCTCTTATTGAAGAGTG+CGG | - | chr2_4:15560134-15560153 | Msa0317650:CDS | 40.0% | |
| TTCTCTACAGTAACCATGGA+TGG | + | chr2_4:15560209-15560228 | None:intergenic | 40.0% | |
| GTCATTCTCTACAGTAACCA+TGG | + | chr2_4:15560213-15560232 | None:intergenic | 40.0% | |
| !!! | GTGCTATATTTTTCAGGTGG+AGG | - | chr2_4:15560296-15560315 | Msa0317650:CDS | 40.0% |
| TATTGAGAAAAAGGGGAGAG+AGG | - | chr2_4:15560511-15560530 | Msa0317650:CDS | 40.0% | |
| AGGGTTGTCGGAAACATTGA+CGG | + | chr2_4:15556944-15556963 | None:intergenic | 45.0% | |
| ! | TGAATCTGGAGCTGACTTCA+CGG | + | chr2_4:15557020-15557039 | None:intergenic | 45.0% |
| GTATCAGGTCTTGAAGCACA+AGG | + | chr2_4:15557297-15557316 | None:intergenic | 45.0% | |
| ! | GTTCCGAGAGTGATAGTGAT+AGG | - | chr2_4:15557529-15557548 | Msa0317650:intron | 45.0% |
| CTCCCTATCACTATCACTCT+CGG | + | chr2_4:15557535-15557554 | None:intergenic | 45.0% | |
| TCCACAATTTGCGAAACCTG+TGG | - | chr2_4:15557722-15557741 | Msa0317650:intron | 45.0% | |
| ACCACAGGTTTCGCAAATTG+TGG | + | chr2_4:15557726-15557745 | None:intergenic | 45.0% | |
| ACAATTTGCGAAACCTGTGG+TGG | - | chr2_4:15557725-15557744 | Msa0317650:intron | 45.0% | |
| GATACGAGGAAAGGGAAGAA+AGG | - | chr2_4:15557747-15557766 | Msa0317650:intron | 45.0% | |
| GAAGAAAGGGTCTAGTCATC+AGG | - | chr2_4:15557761-15557780 | Msa0317650:intron | 45.0% | |
| GAATTGTGTGGTTGTGTTGC+TGG | - | chr2_4:15558059-15558078 | Msa0317650:CDS | 45.0% | |
| TTCTAACGGGGCAACTAAGT+TGG | + | chr2_4:15558192-15558211 | None:intergenic | 45.0% | |
| CACTCCCTTAACTCAACAAG+AGG | + | chr2_4:15558730-15558749 | None:intergenic | 45.0% | |
| !! | GTGACAAGAAGAGCATTAGG+TGG | + | chr2_4:15559190-15559209 | None:intergenic | 45.0% |
| GCTTAGAACTTGAGCTTCTG+CGG | - | chr2_4:15559300-15559319 | Msa0317650:intron | 45.0% | |
| TTCCAACTGGTGGGAATGTT+AGG | - | chr2_4:15559559-15559578 | Msa0317650:intron | 45.0% | |
| TCCAACTGGTGGGAATGTTA+GGG | - | chr2_4:15559560-15559579 | Msa0317650:intron | 45.0% | |
| ACCTCTCTTACATCAACCTG+TGG | + | chr2_4:15559679-15559698 | None:intergenic | 45.0% | |
| !! | ACAGGTTGATGTAAGAGAGG+TGG | - | chr2_4:15559678-15559697 | Msa0317650:intron | 45.0% |
| !! | CAGGTTGATGTAAGAGAGGT+GGG | - | chr2_4:15559679-15559698 | Msa0317650:intron | 45.0% |
| !! | AGGTTGATGTAAGAGAGGTG+GGG | - | chr2_4:15559680-15559699 | Msa0317650:intron | 45.0% |
| GAATTCAGCGCTAAAGGTGA+TGG | - | chr2_4:15559711-15559730 | Msa0317650:intron | 45.0% | |
| TAACCTCAAGACTGCAGTGT+TGG | + | chr2_4:15559857-15559876 | None:intergenic | 45.0% | |
| GAATTAGCCAGAGTTGTTGG+AGG | - | chr2_4:15560107-15560126 | Msa0317650:CDS | 45.0% | |
| TCTTTCTCCTCCAACAACTC+TGG | + | chr2_4:15560117-15560136 | None:intergenic | 45.0% | |
| GTCGAAGACACATAAGTCAC+AGG | - | chr2_4:15560166-15560185 | Msa0317650:CDS | 45.0% | |
| ! | AGCTGACTTCACGGGTTCTT+GGG | + | chr2_4:15557011-15557030 | None:intergenic | 50.0% |
| ! | GAATCTGGAGCTGACTTCAC+GGG | + | chr2_4:15557019-15557038 | None:intergenic | 50.0% |
| AGGTCTTGAAGCACAAGGAG+TGG | + | chr2_4:15557292-15557311 | None:intergenic | 50.0% | |
| ! | CGAGAGTGATAGTGATAGGG+AGG | - | chr2_4:15557533-15557552 | Msa0317650:intron | 50.0% |
| GGATCCGTGGCTGAAAAGAT+TGG | - | chr2_4:15557591-15557610 | Msa0317650:intron | 50.0% | |
| ! | TGTTGGTAAGAGGGTCTGAG+AGG | - | chr2_4:15557667-15557686 | Msa0317650:intron | 50.0% |
| TGCTTCTGTTTCAAAGCCGC+CGG | - | chr2_4:15557695-15557714 | Msa0317650:intron | 50.0% | |
| TTCGCAAATTGTGGAGCCAC+CGG | + | chr2_4:15557717-15557736 | None:intergenic | 50.0% | |
| !! | CTGTGGTGGATACGAGGAAA+GGG | - | chr2_4:15557739-15557758 | Msa0317650:intron | 50.0% |
| GAGATTTGCCAATGCGAGAG+CGG | - | chr2_4:15557830-15557849 | Msa0317650:intron | 50.0% | |
| ! | GGGGCAACTAAGTTGGCAAT+TGG | + | chr2_4:15558185-15558204 | None:intergenic | 50.0% |
| AAATGCGCGATTCTGTGCAC+AGG | - | chr2_4:15559273-15559292 | Msa0317650:intron | 50.0% | |
| GCAGACCACTCATCCAGATA+TGG | + | chr2_4:15559471-15559490 | None:intergenic | 50.0% | |
| TCTGGATGAGTGGTCTGCTA+TGG | - | chr2_4:15559473-15559492 | Msa0317650:intron | 50.0% | |
| ACCAGTTGGAAGTCGTACTG+AGG | + | chr2_4:15559550-15559569 | None:intergenic | 50.0% | |
| TCAGTACGACTTCCAACTGG+TGG | - | chr2_4:15559549-15559568 | Msa0317650:intron | 50.0% | |
| CAGTACGACTTCCAACTGGT+GGG | - | chr2_4:15559550-15559569 | Msa0317650:intron | 50.0% | |
| ACCCTAACATTCCCACCAGT+TGG | + | chr2_4:15559564-15559583 | None:intergenic | 50.0% | |
| !! | GCCACAGGTTGATGTAAGAG+AGG | - | chr2_4:15559675-15559694 | Msa0317650:intron | 50.0% |
| ! | GGTTGATGTAAGAGAGGTGG+GGG | - | chr2_4:15559681-15559700 | Msa0317650:intron | 50.0% |
| ! | AAGACTGCAGTGTTGGACCA+TGG | + | chr2_4:15559850-15559869 | None:intergenic | 50.0% |
| ! | GCTCTTATTGAAGAGTGCGG+AGG | - | chr2_4:15560137-15560156 | Msa0317650:CDS | 50.0% |
| TGTTGCACACGATCCATCCA+TGG | - | chr2_4:15560193-15560212 | Msa0317650:CDS | 50.0% | |
| ! | AGGTGGAGGAGTGTAGCTTA+AGG | - | chr2_4:15560310-15560329 | Msa0317650:CDS | 50.0% |
| ! | GGTGGAGGAGTGTAGCTTAA+GGG | - | chr2_4:15560311-15560330 | Msa0317650:CDS | 50.0% |
| TCTCTCCCTGTTTCACTCAC+CGG | - | chr2_4:15560651-15560670 | Msa0317650:CDS | 50.0% | |
| GACATCCGGTGAGTGAAACA+GGG | + | chr2_4:15560659-15560678 | None:intergenic | 50.0% | |
| TGACATCCGGTGAGTGAAAC+AGG | + | chr2_4:15560660-15560679 | None:intergenic | 50.0% | |
| GTCGGAAACATTGACGGCGT+TGG | + | chr2_4:15556938-15556957 | None:intergenic | 55.0% | |
| TGACTTCACGGGTTCTTGGG+CGG | + | chr2_4:15557008-15557027 | None:intergenic | 55.0% | |
| ! | GAGCTGACTTCACGGGTTCT+TGG | + | chr2_4:15557012-15557031 | None:intergenic | 55.0% |
| !! | TTGTTGGCGTCGATGAGTGG+TGG | + | chr2_4:15557058-15557077 | None:intergenic | 55.0% |
| !! | ACGTTGTTGGCGTCGATGAG+TGG | + | chr2_4:15557061-15557080 | None:intergenic | 55.0% |
| CGTCGGAATCGTCACGTTGT+TGG | + | chr2_4:15557074-15557093 | None:intergenic | 55.0% | |
| TCACTCTCGGAACGCAGTTC+AGG | + | chr2_4:15557522-15557541 | None:intergenic | 55.0% | |
| TTCTGTTTCAAAGCCGCCGG+TGG | - | chr2_4:15557698-15557717 | Msa0317650:intron | 55.0% | |
| !! | CGAAACCTGTGGTGGATACG+AGG | - | chr2_4:15557733-15557752 | Msa0317650:intron | 55.0% |
| CCTTTCCTCGTATCCACCAC+AGG | + | chr2_4:15557741-15557760 | None:intergenic | 55.0% | |
| !! | CCTGTGGTGGATACGAGGAA+AGG | - | chr2_4:15557738-15557757 | Msa0317650:intron | 55.0% |
| GCCTCAGTACGACTTCCAAC+TGG | - | chr2_4:15559546-15559565 | Msa0317650:intron | 55.0% | |
| GGTCCAACACTGCAGTCTTG+AGG | - | chr2_4:15559851-15559870 | Msa0317650:CDS | 55.0% | |
| TGGAGGGGGAGTAGGGTTGT+CGG | + | chr2_4:15556956-15556975 | None:intergenic | 60.0% | |
| !! | TTGTTTGTTGGTGGCGGCGG+AGG | + | chr2_4:15556982-15557001 | None:intergenic | 60.0% |
| !! | CGGTTGTTTGTTGGTGGCGG+CGG | + | chr2_4:15556985-15557004 | None:intergenic | 60.0% |
| ! | CGGCGGTTGTTTGTTGGTGG+CGG | + | chr2_4:15556988-15557007 | None:intergenic | 60.0% |
| CTTGGGCGGCGGTTGTTTGT+TGG | + | chr2_4:15556994-15557013 | None:intergenic | 60.0% | |
| GGCAGAGGGGGTCATGAATC+TGG | + | chr2_4:15557034-15557053 | None:intergenic | 60.0% | |
| ! | ATGAGTGGTGGAGGCAGAGG+GGG | + | chr2_4:15557046-15557065 | None:intergenic | 60.0% |
| ! | GATGAGTGGTGGAGGCAGAG+GGG | + | chr2_4:15557047-15557066 | None:intergenic | 60.0% |
| ! | CGATGAGTGGTGGAGGCAGA+GGG | + | chr2_4:15557048-15557067 | None:intergenic | 60.0% |
| ! | TCGATGAGTGGTGGAGGCAG+AGG | + | chr2_4:15557049-15557068 | None:intergenic | 60.0% |
| !! | TTGGCGTCGATGAGTGGTGG+AGG | + | chr2_4:15557055-15557074 | None:intergenic | 60.0% |
| GCAAATTGTGGAGCCACCGG+CGG | + | chr2_4:15557714-15557733 | None:intergenic | 60.0% | |
| ! | CGCATTGACCGCTCTCGCAT+TGG | + | chr2_4:15557841-15557860 | None:intergenic | 60.0% |
| !! | TTTGTTGGTGGCGGCGGAGG+CGG | + | chr2_4:15556979-15556998 | None:intergenic | 65.0% |
| ! | GGGCGGCGGTTGTTTGTTGG+TGG | + | chr2_4:15556991-15557010 | None:intergenic | 65.0% |
| CTTCACGGGTTCTTGGGCGG+CGG | + | chr2_4:15557005-15557024 | None:intergenic | 65.0% | |
| GGGGCCGATGCGAAGTCATG+TGG | - | chr2_4:15558102-15558121 | Msa0317650:CDS | 65.0% | |
| GAGGCGGTGGAGGGGGAGTA+GGG | + | chr2_4:15556963-15556982 | None:intergenic | 70.0% | |
| GGAGGCGGTGGAGGGGGAGT+AGG | + | chr2_4:15556964-15556983 | None:intergenic | 75.0% | |
| ! | TGGCGGCGGAGGCGGTGGAG+GGG | + | chr2_4:15556971-15556990 | None:intergenic | 80.0% |
| ! | GTGGCGGCGGAGGCGGTGGA+GGG | + | chr2_4:15556972-15556991 | None:intergenic | 80.0% |
| !!! | GTTGGTGGCGGCGGAGGCGG+TGG | + | chr2_4:15556976-15556995 | None:intergenic | 80.0% |
| ! | GGCGGCGGAGGCGGTGGAGG+GGG | + | chr2_4:15556970-15556989 | None:intergenic | 85.0% |
| !! | GGTGGCGGCGGAGGCGGTGG+AGG | + | chr2_4:15556973-15556992 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 15556770 | 15560832 | 15556770 | ID=Msa0317650;Name=Msa0317650 |
| chr2_4 | mRNA | 15556770 | 15560832 | 15556770 | ID=Msa0317650-mRNA-1;Parent=Msa0317650;Name=Msa0317650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=155|1|1|1|0.8|0.83|6|434|494 |
| chr2_4 | exon | 15556770 | 15557290 | 15556770 | ID=Msa0317650-mRNA-1:exon:5779;Parent=Msa0317650-mRNA-1 |
| chr2_4 | exon | 15557415 | 15557522 | 15557415 | ID=Msa0317650-mRNA-1:exon:5778;Parent=Msa0317650-mRNA-1 |
| chr2_4 | exon | 15557831 | 15557920 | 15557831 | ID=Msa0317650-mRNA-1:exon:5777;Parent=Msa0317650-mRNA-1 |
| chr2_4 | exon | 15558021 | 15558137 | 15558021 | ID=Msa0317650-mRNA-1:exon:5776;Parent=Msa0317650-mRNA-1 |
| chr2_4 | exon | 15558244 | 15558363 | 15558244 | ID=Msa0317650-mRNA-1:exon:5775;Parent=Msa0317650-mRNA-1 |
| chr2_4 | exon | 15559715 | 15560832 | 15559715 | ID=Msa0317650-mRNA-1:exon:5774;Parent=Msa0317650-mRNA-1 |
| chr2_4 | five_prime_UTR | 15560678 | 15560832 | 15560678 | ID=Msa0317650-mRNA-1:five_prime_utr;Parent=Msa0317650-mRNA-1 |
| chr2_4 | CDS | 15559715 | 15560677 | 15559715 | ID=Msa0317650-mRNA-1:cds;Parent=Msa0317650-mRNA-1 |
| chr2_4 | CDS | 15558244 | 15558363 | 15558244 | ID=Msa0317650-mRNA-1:cds;Parent=Msa0317650-mRNA-1 |
| chr2_4 | CDS | 15558021 | 15558137 | 15558021 | ID=Msa0317650-mRNA-1:cds;Parent=Msa0317650-mRNA-1 |
| chr2_4 | CDS | 15557831 | 15557920 | 15557831 | ID=Msa0317650-mRNA-1:cds;Parent=Msa0317650-mRNA-1 |
| chr2_4 | CDS | 15557415 | 15557522 | 15557415 | ID=Msa0317650-mRNA-1:cds;Parent=Msa0317650-mRNA-1 |
| chr2_4 | CDS | 15557204 | 15557290 | 15557204 | ID=Msa0317650-mRNA-1:cds;Parent=Msa0317650-mRNA-1 |
| chr2_4 | three_prime_UTR | 15556770 | 15557203 | 15556770 | ID=Msa0317650-mRNA-1:three_prime_utr;Parent=Msa0317650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
