Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327490 | XP_013464127.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 7.84e-85 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044540 | Msa0327490 | 0.810833 | 9.467667e-51 | -8.615850e-47 |
| Msa0210410 | Msa0327490 | 0.953424 | 2.827907e-111 | -8.615850e-47 |
| Msa0327490 | Msa1033590 | 0.813653 | 2.295191e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327490 | MtrunA17_Chr2g0308721 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 7.21e-89 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327490 | AT2G44360.1 | 80.172 | 116 | 23 | 0 | 4 | 119 | 3 | 118 | 2.20e-61 | 185 |
Find 43 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGTGCAACACTTTCTTTA+TGG | 0.245347 | 2_4:-39280372 | None:intergenic |
| TCTCTCCAATCTTCTCCTTC+AGG | 0.289607 | 2_4:+39277933 | Msa0327490:CDS |
| GGATAGACTATCAGCAAAAT+TGG | 0.325700 | 2_4:+39280094 | Msa0327490:CDS |
| AATTGAAACTCTTGGATTAG+AGG | 0.328866 | 2_4:+39279889 | Msa0327490:CDS |
| TAGTGCAACACTTTCTTTAT+GGG | 0.334959 | 2_4:-39280371 | None:intergenic |
| CTGGACAAAGCGAGTTAGTT+TGG | 0.345154 | 2_4:-39280561 | None:intergenic |
| CTACACTTTAAAACTTCAAC+AGG | 0.350549 | 2_4:+39280520 | Msa0327490:three_prime_UTR |
| CGTTCTAAAATTGAAACTCT+TGG | 0.363744 | 2_4:+39279881 | Msa0327490:CDS |
| GTAGCAGCTTAGTGCATGTT+TGG | 0.386171 | 2_4:+39280444 | Msa0327490:three_prime_UTR |
| AGCTTAGTGCATGTTTGGTT+TGG | 0.390133 | 2_4:+39280449 | Msa0327490:three_prime_UTR |
| AAGCTGTTTGGTTGACTTTG+AGG | 0.404571 | 2_4:-39279924 | None:intergenic |
| AACCACCTCGTCAAGCTGTT+TGG | 0.414993 | 2_4:-39279936 | None:intergenic |
| AGCTGAAAGAGCTGGGCATC+GGG | 0.435359 | 2_4:-39277910 | None:intergenic |
| TGGAGAGAAGCTGAAAGAGC+TGG | 0.456074 | 2_4:-39277918 | None:intergenic |
| AAGAACCTGAAGGAGAAGAT+TGG | 0.461431 | 2_4:-39277938 | None:intergenic |
| CGCATTCGCATGGCCGAGGA+AGG | 0.466052 | 2_4:+39277883 | Msa0327490:exon |
| AGCTGTTTGGTTGACTTTGA+GGG | 0.476036 | 2_4:-39279923 | None:intergenic |
| GGCATCGGGTTTCCCTTCCT+CGG | 0.491168 | 2_4:-39277896 | None:intergenic |
| CAATCGCATTCGCATGGCCG+AGG | 0.498216 | 2_4:+39277879 | Msa0327490:exon |
| TGTTTGGGTGTTGATGTCTC+CGG | 0.512462 | 2_4:-39280252 | None:intergenic |
| AAGCTGAAAGAGCTGGGCAT+CGG | 0.521575 | 2_4:-39277911 | None:intergenic |
| ACAAAATGAACATGTGGTGC+TGG | 0.524233 | 2_4:-39280580 | None:intergenic |
| TTAGTTTGGCAATATCAAAT+CGG | 0.526106 | 2_4:-39280547 | None:intergenic |
| CTCAAGAGGGACTGCACTTG+AGG | 0.526243 | 2_4:-39280158 | None:intergenic |
| GTTGGAAATAGCAAAGGAGT+TGG | 0.526515 | 2_4:+39280073 | Msa0327490:intron |
| GTTTGGGTGTTGATGTCTCC+GGG | 0.527968 | 2_4:-39280251 | None:intergenic |
| TCGGAGTTAGCAGTGATGAC+TGG | 0.528868 | 2_4:-39280203 | None:intergenic |
| TGTAAATTTACGTCTTTCCT+CGG | 0.529981 | 2_4:-39280222 | None:intergenic |
| GGAGAGAAGCTGAAAGAGCT+GGG | 0.555323 | 2_4:-39277917 | None:intergenic |
| CGTAAATTTACAGCATCTCC+CGG | 0.567732 | 2_4:+39280233 | Msa0327490:CDS |
| CTCGCATCATCAACAAGTGA+AGG | 0.567784 | 2_4:+39277834 | Msa0327490:five_prime_UTR |
| TACACAGTTGGAAATAGCAA+AGG | 0.568129 | 2_4:+39280067 | Msa0327490:intron |
| AGAAATCAATCGCATTCGCA+TGG | 0.589744 | 2_4:+39277873 | Msa0327490:exon |
| CACTTGAGGATCAGTAGCCA+TGG | 0.594675 | 2_4:-39280144 | None:intergenic |
| CATCAGCTGTACTACTCAAG+AGG | 0.595596 | 2_4:-39280172 | None:intergenic |
| GCATTCGCATGGCCGAGGAA+GGG | 0.624487 | 2_4:+39277884 | Msa0327490:exon |
| TGAGTAGTACAGCTGATGTG+TGG | 0.643244 | 2_4:+39280177 | Msa0327490:CDS |
| TTGAGGATCAGTAGCCATGG+TGG | 0.646946 | 2_4:-39280141 | None:intergenic |
| ATCAGCTGTACTACTCAAGA+GGG | 0.672370 | 2_4:-39280171 | None:intergenic |
| GTCAACCAAACAGCTTGACG+AGG | 0.675676 | 2_4:+39279931 | Msa0327490:CDS |
| AAGAAAACAAAATGAACATG+TGG | 0.681509 | 2_4:-39280586 | None:intergenic |
| TGAGATGATATCATCCACCA+TGG | 0.693620 | 2_4:+39280127 | Msa0327490:CDS |
| AGTCATCACTGCTAACTCCG+AGG | 0.719423 | 2_4:+39280205 | Msa0327490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAATTAATACAGTTAT+TGG | + | chr2_4:39278635-39278654 | Msa0327490:intron | 15.0% |
| !! | TGATATAAAATAAATGTAAG+TGG | + | chr2_4:39278658-39278677 | Msa0327490:intron | 15.0% |
| !!! | TTGTTTGTAATTTTTCTTAA+GGG | - | chr2_4:39278759-39278778 | None:intergenic | 15.0% |
| !!! | TTTGTTTGTAATTTTTCTTA+AGG | - | chr2_4:39278760-39278779 | None:intergenic | 15.0% |
| !!! | TTTTTTAATTCTTTTTTTGC+TGG | + | chr2_4:39278879-39278898 | Msa0327490:intron | 15.0% |
| !!! | AATTATTGGATTTTTAGAAA+TGG | - | chr2_4:39278954-39278973 | None:intergenic | 15.0% |
| !!! | TTTCTAAAAATCCAATAATT+TGG | + | chr2_4:39278954-39278973 | Msa0327490:intron | 15.0% |
| !!! | GTTTTAATTATGAAAACTTT+TGG | + | chr2_4:39279127-39279146 | Msa0327490:intron | 15.0% |
| !! | GTTAATATATATAGCAATAT+TGG | - | chr2_4:39279798-39279817 | None:intergenic | 15.0% |
| !! | AACAAAACAAGTAATTAAAA+AGG | - | chr2_4:39280047-39280066 | None:intergenic | 15.0% |
| !! | TCCTGTAATTGTTTAATAAT+AGG | + | chr2_4:39278097-39278116 | Msa0327490:intron | 20.0% |
| !! | TCCTATTATTAAACAATTAC+AGG | - | chr2_4:39278101-39278120 | None:intergenic | 20.0% |
| !! | TGCTATATTTAATTAAGAAC+AGG | - | chr2_4:39278371-39278390 | None:intergenic | 20.0% |
| !! | TTATTTACAATTCAGAAAAC+AGG | + | chr2_4:39278433-39278452 | Msa0327490:intron | 20.0% |
| !! | TTTACAAAAAATTTAGCACA+AGG | - | chr2_4:39278604-39278623 | None:intergenic | 20.0% |
| !!! | TGCTAAATTTTTTGTAAAGT+TGG | + | chr2_4:39278606-39278625 | Msa0327490:intron | 20.0% |
| !!! | GCTAAATTTTTTGTAAAGTT+GGG | + | chr2_4:39278607-39278626 | Msa0327490:intron | 20.0% |
| !!! | TGTTTGTAATTTTTCTTAAG+GGG | - | chr2_4:39278758-39278777 | None:intergenic | 20.0% |
| !! | AAAAATAAACAATTCTCCAT+AGG | - | chr2_4:39278864-39278883 | None:intergenic | 20.0% |
| !! | TAAAAAAAGTAGACTAATGA+AGG | - | chr2_4:39279341-39279360 | None:intergenic | 20.0% |
| !! | CCTAATACTAGAATTATTTA+CGG | - | chr2_4:39279697-39279716 | None:intergenic | 20.0% |
| !! | ATGAAATGTTAATCAAGAAA+TGG | - | chr2_4:39279979-39279998 | None:intergenic | 20.0% |
| !! | AACAAGTAATTAAAAAGGAA+AGG | - | chr2_4:39280042-39280061 | None:intergenic | 20.0% |
| !!! | TTTTCTTATCGTTGAATATA+TGG | + | chr2_4:39280303-39280322 | Msa0327490:three_prime_UTR | 20.0% |
| !!! | TTTTCTTTGCAAATTTGAAA+TGG | + | chr2_4:39280602-39280621 | Msa0327490:three_prime_UTR | 20.0% |
| ! | AATAATCAACAGATAGATCT+TGG | - | chr2_4:39278001-39278020 | None:intergenic | 25.0% |
| !!! | TTGTTTGATCAATTTGGTTT+TGG | - | chr2_4:39278240-39278259 | None:intergenic | 25.0% |
| !! | TTGTTCTTGTTTGATCAATT+TGG | - | chr2_4:39278246-39278265 | None:intergenic | 25.0% |
| ! | TGTATGATATATATTAGCTC+AGG | + | chr2_4:39278340-39278359 | Msa0327490:intron | 25.0% |
| ! | ATGAATAACTGGAAAATCAA+GGG | + | chr2_4:39278685-39278704 | Msa0327490:intron | 25.0% |
| !!! | GAATATGCGATTTTAAGTTT+TGG | + | chr2_4:39278821-39278840 | Msa0327490:intron | 25.0% |
| ! | AAAAACACATTGTTAAGAGA+AGG | - | chr2_4:39279193-39279212 | None:intergenic | 25.0% |
| !!! | TTAACAATGTGTTTTTTACC+AGG | + | chr2_4:39279197-39279216 | Msa0327490:intron | 25.0% |
| ! | CCATTAACAATACAAATTCT+CGG | - | chr2_4:39279443-39279462 | None:intergenic | 25.0% |
| ! | CCGTAAATAATTCTAGTATT+AGG | + | chr2_4:39279694-39279713 | Msa0327490:intron | 25.0% |
| ! | TTGGTAAGAAATTAAACTAC+TGG | - | chr2_4:39279779-39279798 | None:intergenic | 25.0% |
| ! | TATCTAATGATAACATCTGT+AGG | + | chr2_4:39279823-39279842 | Msa0327490:intron | 25.0% |
| ! | TAGTGCAAAAGATAAAAAAG+AGG | + | chr2_4:39280408-39280427 | Msa0327490:three_prime_UTR | 25.0% |
| !! | TTAGTTTGGCAATATCAAAT+CGG | - | chr2_4:39280550-39280569 | None:intergenic | 25.0% |
| ! | AAGAAAACAAAATGAACATG+TGG | - | chr2_4:39280589-39280608 | None:intergenic | 25.0% |
| TGAAATTGAAAAGAACCTGA+AGG | - | chr2_4:39277951-39277970 | None:intergenic | 30.0% | |
| TACTGATAGAACAATAATCG+TGG | + | chr2_4:39278132-39278151 | Msa0327490:intron | 30.0% | |
| ATCGTGGAGACTTATTATTA+AGG | + | chr2_4:39278148-39278167 | Msa0327490:intron | 30.0% | |
| !! | GATCAAGTTGACAAATAAAG+TGG | - | chr2_4:39278295-39278314 | None:intergenic | 30.0% |
| GATTAGACAACACTTAAAGA+TGG | - | chr2_4:39278513-39278532 | None:intergenic | 30.0% | |
| TAAGTGGTAAGATGAATAAC+TGG | + | chr2_4:39278674-39278693 | Msa0327490:intron | 30.0% | |
| GATGAATAACTGGAAAATCA+AGG | + | chr2_4:39278684-39278703 | Msa0327490:intron | 30.0% | |
| AAACAATTCTCCATAGGAAA+AGG | - | chr2_4:39278858-39278877 | None:intergenic | 30.0% | |
| TGCAGTATAGTACTTTCTAA+AGG | + | chr2_4:39279016-39279035 | Msa0327490:intron | 30.0% | |
| TTTCATGTATTTGCAACAGA+TGG | + | chr2_4:39279073-39279092 | Msa0327490:intron | 30.0% | |
| !!! | CTGTGTTTGGTTTTTAACTT+TGG | + | chr2_4:39279245-39279264 | Msa0327490:intron | 30.0% |
| AGTATTACAACAATAAGCTG+TGG | - | chr2_4:39279400-39279419 | None:intergenic | 30.0% | |
| GTTGTAATACTAGTGATCTT+TGG | + | chr2_4:39279409-39279428 | Msa0327490:intron | 30.0% | |
| TTAACAATACAAATTCTCGG+TGG | - | chr2_4:39279440-39279459 | None:intergenic | 30.0% | |
| CCGAGAATTTGTATTGTTAA+TGG | + | chr2_4:39279440-39279459 | Msa0327490:intron | 30.0% | |
| TTCTTGTCTTAAAGCCTAAA+AGG | + | chr2_4:39279492-39279511 | Msa0327490:intron | 30.0% | |
| AATGAAGATCATAGACTACT+AGG | - | chr2_4:39279565-39279584 | None:intergenic | 30.0% | |
| CTAGAATTATTTACGGAATC+AGG | - | chr2_4:39279690-39279709 | None:intergenic | 30.0% | |
| !! | CGTTCTAAAATTGAAACTCT+TGG | + | chr2_4:39279881-39279900 | Msa0327490:CDS | 30.0% |
| ! | AATTGAAACTCTTGGATTAG+AGG | + | chr2_4:39279889-39279908 | Msa0327490:CDS | 30.0% |
| !!! | ACTTGTTTTGTTTACACAGT+TGG | + | chr2_4:39280055-39280074 | Msa0327490:intron | 30.0% |
| TGTAAATTTACGTCTTTCCT+CGG | - | chr2_4:39280225-39280244 | None:intergenic | 30.0% | |
| TAGTGCAACACTTTCTTTAT+GGG | - | chr2_4:39280374-39280393 | None:intergenic | 30.0% | |
| ATAGTGCAACACTTTCTTTA+TGG | - | chr2_4:39280375-39280394 | None:intergenic | 30.0% | |
| ! | TGTAGTTTTTGCCAAAAACA+TGG | - | chr2_4:39280505-39280524 | None:intergenic | 30.0% |
| !! | CTACACTTTAAAACTTCAAC+AGG | + | chr2_4:39280520-39280539 | Msa0327490:three_prime_UTR | 30.0% |
| ! | GTTCATATACTGATTGCATC+AGG | + | chr2_4:39278053-39278072 | Msa0327490:intron | 35.0% |
| GTGGAGACTTATTATTAAGG+AGG | + | chr2_4:39278151-39278170 | Msa0327490:intron | 35.0% | |
| ACAGGTTGTTTAATCCACTT+TGG | + | chr2_4:39278451-39278470 | Msa0327490:intron | 35.0% | |
| ! | AAGTGTTGTCTAATCCACTT+TGG | + | chr2_4:39278518-39278537 | Msa0327490:intron | 35.0% |
| AGTGTTGTCTAATCCACTTT+GGG | + | chr2_4:39278519-39278538 | Msa0327490:intron | 35.0% | |
| ! | TATGCATTGTCCTTTTCCTA+TGG | + | chr2_4:39278845-39278864 | Msa0327490:intron | 35.0% |
| TCACTACACAGCCAAATTAT+TGG | - | chr2_4:39278968-39278987 | None:intergenic | 35.0% | |
| AAAGGACAAATACAGTTGTC+TGG | + | chr2_4:39279034-39279053 | Msa0327490:intron | 35.0% | |
| ! | TTTACCAGGCTATTGATTGA+TGG | + | chr2_4:39279211-39279230 | Msa0327490:intron | 35.0% |
| ! | AACAATCAATGTGTTTTCCC+CGG | + | chr2_4:39279299-39279318 | Msa0327490:intron | 35.0% |
| AGGATAACCGATAATTAGAC+CGG | - | chr2_4:39279321-39279340 | None:intergenic | 35.0% | |
| TGAGAAGACGAATAGAAGTT+TGG | - | chr2_4:39279365-39279384 | None:intergenic | 35.0% | |
| !!! | AGGCATGTGTTATTTTCAAC+CGG | - | chr2_4:39279545-39279564 | None:intergenic | 35.0% |
| ATTTACGGAATCAGGATCAA+TGG | - | chr2_4:39279682-39279701 | None:intergenic | 35.0% | |
| ATTGCATGTCTCTAATCTGA+TGG | + | chr2_4:39279997-39280016 | Msa0327490:intron | 35.0% | |
| TACACAGTTGGAAATAGCAA+AGG | + | chr2_4:39280067-39280086 | Msa0327490:intron | 35.0% | |
| GGATAGACTATCAGCAAAAT+TGG | + | chr2_4:39280094-39280113 | Msa0327490:CDS | 35.0% | |
| ! | AGAGTTTTCTGCATCTGTTT+GGG | - | chr2_4:39280270-39280289 | None:intergenic | 35.0% |
| ! | TAGAGTTTTCTGCATCTGTT+TGG | - | chr2_4:39280271-39280290 | None:intergenic | 35.0% |
| AGAAATCAATCGCATTCGCA+TGG | + | chr2_4:39277873-39277892 | Msa0327490:exon | 40.0% | |
| AAGAACCTGAAGGAGAAGAT+TGG | - | chr2_4:39277941-39277960 | None:intergenic | 40.0% | |
| !!! | AGCATTGGTGTGAGTTTTGT+CGG | - | chr2_4:39278189-39278208 | None:intergenic | 40.0% |
| ACAAATAAAGTGGCTCGAAC+TGG | - | chr2_4:39278285-39278304 | None:intergenic | 40.0% | |
| TCGAATCGAGATTGAAACCA+CGG | - | chr2_4:39278487-39278506 | None:intergenic | 40.0% | |
| GTGTTGTCTAATCCACTTTG+GGG | + | chr2_4:39278520-39278539 | Msa0327490:intron | 40.0% | |
| TGTTGTCTAATCCACTTTGG+GGG | + | chr2_4:39278521-39278540 | Msa0327490:intron | 40.0% | |
| !! | GAACTATTTTTCCCCCAAAG+TGG | - | chr2_4:39278535-39278554 | None:intergenic | 40.0% |
| AATCGCATATTCACGCTAGT+TGG | - | chr2_4:39278813-39278832 | None:intergenic | 40.0% | |
| CTATACTGCATGATTGCACA+GGG | - | chr2_4:39279006-39279025 | None:intergenic | 40.0% | |
| ACTATACTGCATGATTGCAC+AGG | - | chr2_4:39279007-39279026 | None:intergenic | 40.0% | |
| CATGAAAAGTGACATCGCAA+GGG | - | chr2_4:39279060-39279079 | None:intergenic | 40.0% | |
| ACATGAAAAGTGACATCGCA+AGG | - | chr2_4:39279061-39279080 | None:intergenic | 40.0% | |
| CAATCCATCAATCAATAGCC+TGG | - | chr2_4:39279218-39279237 | None:intergenic | 40.0% | |
| GGATTGATATGAGCTGTGTT+TGG | + | chr2_4:39279232-39279251 | Msa0327490:intron | 40.0% | |
| ! | GTTTTCCCCGGTCTAATTAT+CGG | + | chr2_4:39279311-39279330 | Msa0327490:intron | 40.0% |
| GATAACCGATAATTAGACCG+GGG | - | chr2_4:39279319-39279338 | None:intergenic | 40.0% | |
| GGATAACCGATAATTAGACC+GGG | - | chr2_4:39279320-39279339 | None:intergenic | 40.0% | |
| ! | AGGGCTGGATTAATGTTTTC+CGG | + | chr2_4:39279523-39279542 | Msa0327490:intron | 40.0% |
| ! | AGCTGTTTGGTTGACTTTGA+GGG | - | chr2_4:39279926-39279945 | None:intergenic | 40.0% |
| ! | AAGCTGTTTGGTTGACTTTG+AGG | - | chr2_4:39279927-39279946 | None:intergenic | 40.0% |
| GTTGGAAATAGCAAAGGAGT+TGG | + | chr2_4:39280073-39280092 | Msa0327490:intron | 40.0% | |
| TGAGATGATATCATCCACCA+TGG | + | chr2_4:39280127-39280146 | Msa0327490:CDS | 40.0% | |
| ATCAGCTGTACTACTCAAGA+GGG | - | chr2_4:39280174-39280193 | None:intergenic | 40.0% | |
| CGTAAATTTACAGCATCTCC+CGG | + | chr2_4:39280233-39280252 | Msa0327490:CDS | 40.0% | |
| AGCTTAGTGCATGTTTGGTT+TGG | + | chr2_4:39280449-39280468 | Msa0327490:three_prime_UTR | 40.0% | |
| ! | ACAACGAGTCACCATGTTTT+TGG | + | chr2_4:39280491-39280510 | Msa0327490:three_prime_UTR | 40.0% |
| ACAAAATGAACATGTGGTGC+TGG | - | chr2_4:39280583-39280602 | None:intergenic | 40.0% | |
| CTCGCATCATCAACAAGTGA+AGG | + | chr2_4:39277834-39277853 | Msa0327490:five_prime_UTR | 45.0% | |
| TCTCTCCAATCTTCTCCTTC+AGG | + | chr2_4:39277933-39277952 | Msa0327490:CDS | 45.0% | |
| TGCATCACGCATCAAAGCAT+TGG | - | chr2_4:39278204-39278223 | None:intergenic | 45.0% | |
| ACGGATAGGTTTCACCAAAG+TGG | - | chr2_4:39278468-39278487 | None:intergenic | 45.0% | |
| ACTTTGGTGAAACCTATCCG+TGG | + | chr2_4:39278467-39278486 | Msa0327490:intron | 45.0% | |
| TCGAGATTGAAACCACGGAT+AGG | - | chr2_4:39278482-39278501 | None:intergenic | 45.0% | |
| GCTCATAGTCTGCAGAATAG+TGG | + | chr2_4:39279462-39279481 | Msa0327490:intron | 45.0% | |
| AAGCCTAAAAGGCCTAAGAG+AGG | + | chr2_4:39279503-39279522 | Msa0327490:intron | 45.0% | |
| AGCCTAAAAGGCCTAAGAGA+GGG | + | chr2_4:39279504-39279523 | Msa0327490:intron | 45.0% | |
| CATTAATCCAGCCCTCTCTT+AGG | - | chr2_4:39279518-39279537 | None:intergenic | 45.0% | |
| CAGGATCAATGGAAACAGAG+TGG | - | chr2_4:39279671-39279690 | None:intergenic | 45.0% | |
| GACTAAGCATGCAGTTTCTC+TGG | + | chr2_4:39279747-39279766 | Msa0327490:intron | 45.0% | |
| CATCAGCTGTACTACTCAAG+AGG | - | chr2_4:39280175-39280194 | None:intergenic | 45.0% | |
| TGAGTAGTACAGCTGATGTG+TGG | + | chr2_4:39280177-39280196 | Msa0327490:CDS | 45.0% | |
| !! | TGTTTGGGTGTTGATGTCTC+CGG | - | chr2_4:39280255-39280274 | None:intergenic | 45.0% |
| GTAGCAGCTTAGTGCATGTT+TGG | + | chr2_4:39280444-39280463 | Msa0327490:three_prime_UTR | 45.0% | |
| CTGGACAAAGCGAGTTAGTT+TGG | - | chr2_4:39280564-39280583 | None:intergenic | 45.0% | |
| !! | ATAAATAAATAAATAAATGA+TGG | - | chr2_4:39277974-39277993 | None:intergenic | 5.0% |
| AAGCTGAAAGAGCTGGGCAT+CGG | - | chr2_4:39277914-39277933 | None:intergenic | 50.0% | |
| GGAGAGAAGCTGAAAGAGCT+GGG | - | chr2_4:39277920-39277939 | None:intergenic | 50.0% | |
| TGGAGAGAAGCTGAAAGAGC+TGG | - | chr2_4:39277921-39277940 | None:intergenic | 50.0% | |
| ! | AGCACAAGGAAAGCACGAAG+AGG | - | chr2_4:39278590-39278609 | None:intergenic | 50.0% |
| TGCACAGGGATGAACTGTAG+TGG | - | chr2_4:39278992-39279011 | None:intergenic | 50.0% | |
| ! | AGCCCTCTCTTAGGCCTTTT+AGG | - | chr2_4:39279509-39279528 | None:intergenic | 50.0% |
| TAAAAGGCCTAAGAGAGGGC+TGG | + | chr2_4:39279508-39279527 | Msa0327490:intron | 50.0% | |
| GTCAACCAAACAGCTTGACG+AGG | + | chr2_4:39279931-39279950 | Msa0327490:CDS | 50.0% | |
| AACCAAACAGCTTGACGAGG+TGG | + | chr2_4:39279934-39279953 | Msa0327490:intron | 50.0% | |
| AACCACCTCGTCAAGCTGTT+TGG | - | chr2_4:39279939-39279958 | None:intergenic | 50.0% | |
| TTGAGGATCAGTAGCCATGG+TGG | - | chr2_4:39280144-39280163 | None:intergenic | 50.0% | |
| CACTTGAGGATCAGTAGCCA+TGG | - | chr2_4:39280147-39280166 | None:intergenic | 50.0% | |
| TCGGAGTTAGCAGTGATGAC+TGG | - | chr2_4:39280206-39280225 | None:intergenic | 50.0% | |
| AGTCATCACTGCTAACTCCG+AGG | + | chr2_4:39280205-39280224 | Msa0327490:CDS | 50.0% | |
| !! | GTTTGGGTGTTGATGTCTCC+GGG | - | chr2_4:39280254-39280273 | None:intergenic | 50.0% |
| AGCTGAAAGAGCTGGGCATC+GGG | - | chr2_4:39277913-39277932 | None:intergenic | 55.0% | |
| CTCAAGAGGGACTGCACTTG+AGG | - | chr2_4:39280161-39280180 | None:intergenic | 55.0% | |
| CAATCGCATTCGCATGGCCG+AGG | + | chr2_4:39277879-39277898 | Msa0327490:exon | 60.0% | |
| GCATTCGCATGGCCGAGGAA+GGG | + | chr2_4:39277884-39277903 | Msa0327490:exon | 60.0% | |
| ! | GGCATCGGGTTTCCCTTCCT+CGG | - | chr2_4:39277899-39277918 | None:intergenic | 60.0% |
| CGCATTCGCATGGCCGAGGA+AGG | + | chr2_4:39277883-39277902 | Msa0327490:exon | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 39277783 | 39280675 | 39277783 | ID=Msa0327490;Name=Msa0327490 |
| chr2_4 | mRNA | 39277783 | 39280675 | 39277783 | ID=Msa0327490-mRNA-1;Parent=Msa0327490;Name=Msa0327490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=109|1|1|1|1|1|3|380|130 |
| chr2_4 | exon | 39277783 | 39277954 | 39277783 | ID=Msa0327490-mRNA-1:exon:11792;Parent=Msa0327490-mRNA-1 |
| chr2_4 | exon | 39279845 | 39279952 | 39279845 | ID=Msa0327490-mRNA-1:exon:11793;Parent=Msa0327490-mRNA-1 |
| chr2_4 | exon | 39280074 | 39280675 | 39280074 | ID=Msa0327490-mRNA-1:exon:11794;Parent=Msa0327490-mRNA-1 |
| chr2_4 | five_prime_UTR | 39277783 | 39277891 | 39277783 | ID=Msa0327490-mRNA-1:five_prime_utr;Parent=Msa0327490-mRNA-1 |
| chr2_4 | CDS | 39277892 | 39277954 | 39277892 | ID=Msa0327490-mRNA-1:cds;Parent=Msa0327490-mRNA-1 |
| chr2_4 | CDS | 39279845 | 39279952 | 39279845 | ID=Msa0327490-mRNA-1:cds;Parent=Msa0327490-mRNA-1 |
| chr2_4 | CDS | 39280074 | 39280295 | 39280074 | ID=Msa0327490-mRNA-1:cds;Parent=Msa0327490-mRNA-1 |
| chr2_4 | three_prime_UTR | 39280296 | 39280675 | 39280296 | ID=Msa0327490-mRNA-1:three_prime_utr;Parent=Msa0327490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
