Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328230 | XP_013463544.1 | 94.352 | 301 | 14 | 1 | 7 | 307 | 1 | 298 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0328230 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0328230 | Msa0328280 | 0.833043 | 6.689459e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328230 | MtrunA17_Chr2g0300621 | 94.352 | 301 | 14 | 1 | 7 | 307 | 1 | 298 | 0.0 | 590 |
| Msa0328230 | MtrunA17_Chr4g0073171 | 28.723 | 188 | 109 | 5 | 115 | 286 | 58 | 236 | 3.24e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328230 | AT2G06025.1 | 58.194 | 299 | 111 | 3 | 7 | 305 | 1 | 285 | 9.61e-121 | 348 |
| Msa0328230 | AT2G06025.6 | 58.194 | 299 | 111 | 3 | 7 | 305 | 1 | 285 | 9.61e-121 | 348 |
| Msa0328230 | AT2G06025.4 | 58.194 | 299 | 111 | 3 | 7 | 305 | 1 | 285 | 9.61e-121 | 348 |
| Msa0328230 | AT2G06025.3 | 58.594 | 256 | 92 | 3 | 7 | 262 | 1 | 242 | 1.78e-102 | 300 |
| Msa0328230 | AT2G06025.5 | 58.594 | 256 | 92 | 3 | 7 | 262 | 1 | 242 | 1.78e-102 | 300 |
| Msa0328230 | AT2G06025.2 | 58.594 | 256 | 92 | 3 | 7 | 262 | 1 | 242 | 1.78e-102 | 300 |
| Msa0328230 | AT2G06025.7 | 55.856 | 222 | 84 | 3 | 7 | 228 | 1 | 208 | 1.76e-81 | 246 |
| Msa0328230 | AT4G28030.1 | 30.583 | 206 | 101 | 7 | 111 | 292 | 58 | 245 | 4.16e-13 | 68.6 |
Find 91 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATTATCCATTCCATTT+TGG | 0.194180 | 2_4:+40428024 | Msa0328230:five_prime_UTR |
| TAAAGTAATTAAATTAAATT+AGG | 0.247120 | 2_4:-40428170 | None:intergenic |
| CCCTTGTCGACGAGCCAATT+TGG | 0.255534 | 2_4:-40430537 | None:intergenic |
| ATTTGAGAAGCATAAAGTTT+TGG | 0.261676 | 2_4:-40428138 | None:intergenic |
| AAACCATCTTCCACAACTTT+AGG | 0.268243 | 2_4:-40428606 | None:intergenic |
| CTGCAAGGAGAGACTTTCCC+TGG | 0.270902 | 2_4:+40430343 | Msa0328230:CDS |
| AAATTTATGTGTTGCCAAAT+TGG | 0.283413 | 2_4:+40430523 | Msa0328230:CDS |
| TGAAATTCAGGTTTATGAAT+TGG | 0.285497 | 2_4:-40428276 | None:intergenic |
| AAAGAAAATAGATTTGAGTT+TGG | 0.287660 | 2_4:+40428684 | Msa0328230:CDS |
| TAAAGTAAGATATGAAATTC+AGG | 0.293568 | 2_4:-40428288 | None:intergenic |
| GGTCCATGAGGATGTAATTT+TGG | 0.303454 | 2_4:-40428343 | None:intergenic |
| AAGCGGTGCAAGGTGCAAAA+TGG | 0.311231 | 2_4:+40430035 | Msa0328230:CDS |
| TCCACAACTTTAGGAACAAT+TGG | 0.321350 | 2_4:-40428597 | None:intergenic |
| GCATAGTCAAATTCAATAAA+AGG | 0.321610 | 2_4:-40431103 | None:intergenic |
| CAAAAGGAAATTTGCTGATC+AGG | 0.341147 | 2_4:+40429906 | Msa0328230:CDS |
| CTGTGCTTGATGAAGAGTTT+TGG | 0.345709 | 2_4:+40428727 | Msa0328230:CDS |
| AAGAAAATAGATTTGAGTTT+GGG | 0.347621 | 2_4:+40428685 | Msa0328230:CDS |
| GTATACCTCAAATGATTTAC+AGG | 0.357644 | 2_4:-40430987 | None:intergenic |
| CTGTTTATGCTGCAACAAAA+AGG | 0.359050 | 2_4:-40430470 | None:intergenic |
| CTCGTTATAAATAAAGAATA+TGG | 0.366312 | 2_4:-40431230 | None:intergenic |
| AGATTGAAAGAATAGGTTAA+TGG | 0.369167 | 2_4:-40428221 | None:intergenic |
| TTTGGTGCATTTGTAATTAT+GGG | 0.370191 | 2_4:-40428325 | None:intergenic |
| TATGCATACTCAAATGCATT+TGG | 0.372797 | 2_4:+40431121 | Msa0328230:three_prime_UTR |
| TCGCCAGTCAGCCACCAAAA+TGG | 0.383821 | 2_4:-40428038 | None:intergenic |
| TTACCTCAAAGCCCATCTTT+TGG | 0.386865 | 2_4:-40430734 | None:intergenic |
| GTTCAATCCGTGACTGGAAT+GGG | 0.388919 | 2_4:-40431267 | None:intergenic |
| TCTCTCCTTGCAGCAAATAT+CGG | 0.397446 | 2_4:-40430333 | None:intergenic |
| GGCTAAGGGCAGAAAGTCAT+TGG | 0.397544 | 2_4:+40429487 | Msa0328230:CDS |
| CAGTTCCTGTAAATCATTTG+AGG | 0.405332 | 2_4:+40430982 | Msa0328230:three_prime_UTR |
| AGCGGTGCAAGGTGCAAAAT+GGG | 0.411100 | 2_4:+40430036 | Msa0328230:CDS |
| TAATGAAACAGAACAAGAAC+AGG | 0.417724 | 2_4:+40431157 | Msa0328230:three_prime_UTR |
| GTCGAAAATGCAAAATCTAA+TGG | 0.420526 | 2_4:+40430587 | Msa0328230:CDS |
| GGTAGACAGCAGCCTGGCTA+AGG | 0.441883 | 2_4:+40429472 | Msa0328230:intron |
| TAGTTAATTATGATCCAATC+TGG | 0.442431 | 2_4:+40430929 | Msa0328230:three_prime_UTR |
| ATGACTTTCTGCCCTTAGCC+AGG | 0.443627 | 2_4:-40429484 | None:intergenic |
| GTTCCTAAAGTTGTGGAAGA+TGG | 0.448306 | 2_4:+40428603 | Msa0328230:CDS |
| AGAACACCACCAAGTAGATA+TGG | 0.454568 | 2_4:+40430491 | Msa0328230:CDS |
| AGTTTGGGCAGTTTGTTGCT+AGG | 0.455295 | 2_4:+40428700 | Msa0328230:CDS |
| AATTTGCAACTGTTCCAGAT+TGG | 0.457980 | 2_4:-40430943 | None:intergenic |
| ATTATTAGCAGGTGTGAGTC+AGG | 0.465979 | 2_4:+40430665 | Msa0328230:intron |
| GTACCAAAAGATGGGCTTTG+AGG | 0.468548 | 2_4:+40430731 | Msa0328230:CDS |
| CCACAACTTTAGGAACAATT+GGG | 0.469375 | 2_4:-40428596 | None:intergenic |
| TTCATCTAGATTGAAAGAAT+AGG | 0.471254 | 2_4:-40428228 | None:intergenic |
| ACAGTTATTGTACCAAAAGA+TGG | 0.478573 | 2_4:+40430722 | Msa0328230:CDS |
| GCCAAATTGGCTCGTCGACA+AGG | 0.478860 | 2_4:+40430536 | Msa0328230:CDS |
| ACACGCATATACATTGACTT+AGG | 0.483659 | 2_4:-40431010 | None:intergenic |
| TGCATGTTGACAGAAATAAT+AGG | 0.485408 | 2_4:+40430694 | Msa0328230:CDS |
| TCATGTTTATCAGGTGAGAA+AGG | 0.487782 | 2_4:+40430249 | Msa0328230:intron |
| TGAATTGGAATAGTTGACAT+AGG | 0.492624 | 2_4:-40428261 | None:intergenic |
| CGTAGCAAGTATGTTTCCTC+TGG | 0.493901 | 2_4:-40430881 | None:intergenic |
| GATATATTGATATCTACAAA+AGG | 0.499748 | 2_4:+40429890 | Msa0328230:intron |
| CCCAATTGTTCCTAAAGTTG+TGG | 0.500678 | 2_4:+40428596 | Msa0328230:CDS |
| GTTTGGGCAGTTTGTTGCTA+GGG | 0.500725 | 2_4:+40428701 | Msa0328230:CDS |
| AGTTCAATCCGTGACTGGAA+TGG | 0.504230 | 2_4:-40431268 | None:intergenic |
| CGAATGGTCTTCGATTTGAT+CGG | 0.516980 | 2_4:+40428634 | Msa0328230:CDS |
| CACGCATATACATTGACTTA+GGG | 0.518548 | 2_4:-40431009 | None:intergenic |
| GCAATGTAACCATATCTACT+TGG | 0.536879 | 2_4:-40430500 | None:intergenic |
| GCACCAAAATTACATCCTCA+TGG | 0.537776 | 2_4:+40428340 | Msa0328230:CDS |
| GTTGACAGAAATAATAGGCC+TGG | 0.539017 | 2_4:+40430699 | Msa0328230:CDS |
| TATGAAGAATAAGAAGATGA+AGG | 0.539557 | 2_4:+40428548 | Msa0328230:CDS |
| GTGCATTTGTAATTATGGGT+TGG | 0.548458 | 2_4:-40428321 | None:intergenic |
| CAGTTATTGTACCAAAAGAT+GGG | 0.552741 | 2_4:+40430723 | Msa0328230:CDS |
| GCTAAGGGCAGAAAGTCATT+GGG | 0.553474 | 2_4:+40429488 | Msa0328230:CDS |
| AATATCCGATATTTGCTGCA+AGG | 0.560266 | 2_4:+40430328 | Msa0328230:CDS |
| ATTTGATCGGTTGCAGCCGT+CGG | 0.562541 | 2_4:+40428647 | Msa0328230:CDS |
| TGCAAGGAGAGACTTTCCCT+GGG | 0.571957 | 2_4:+40430344 | Msa0328230:CDS |
| CATATTCTTTATTTATAACG+AGG | 0.575149 | 2_4:+40431231 | Msa0328230:three_prime_UTR |
| TGGTTGAAACTGCAAACTCT+CGG | 0.577388 | 2_4:+40430852 | Msa0328230:CDS |
| GAAGAATAAGAAGATGAAGG+AGG | 0.579221 | 2_4:+40428551 | Msa0328230:CDS |
| TTAATCAACTCTGTTTCCGA+CGG | 0.588145 | 2_4:-40428663 | None:intergenic |
| TTCTTTGGTAGACAGCAGCC+TGG | 0.588973 | 2_4:+40429466 | Msa0328230:intron |
| TTTACAGGAACTGAAGCAGT+TGG | 0.589966 | 2_4:-40430972 | None:intergenic |
| ACTTCTACTTTCCGGCGTGG+TGG | 0.590556 | 2_4:-40428072 | None:intergenic |
| AGTCAGCCACCAAAATGGAA+TGG | 0.590860 | 2_4:-40428033 | None:intergenic |
| GTAGACAGCAGCCTGGCTAA+GGG | 0.595602 | 2_4:+40429473 | Msa0328230:intron |
| GAAGATGGTTTGAGCTCGAA+TGG | 0.604899 | 2_4:+40428618 | Msa0328230:CDS |
| CCAAATTGGCTCGTCGACAA+GGG | 0.609532 | 2_4:+40430537 | Msa0328230:CDS |
| GGGAGAATCGAACATATGAA+AGG | 0.623790 | 2_4:+40429508 | Msa0328230:CDS |
| AAGTCAATGTATATGCGTGT+AGG | 0.627047 | 2_4:+40431013 | Msa0328230:three_prime_UTR |
| TTCAATCCGTGACTGGAATG+GGG | 0.640753 | 2_4:-40431266 | None:intergenic |
| TAGTCAAATTCAATAAAAGG+AGG | 0.655540 | 2_4:-40431100 | None:intergenic |
| ATGACTTCTACTTTCCGGCG+TGG | 0.658502 | 2_4:-40428075 | None:intergenic |
| CAGCTGCGCATGCATTATCG+CGG | 0.671835 | 2_4:+40430061 | Msa0328230:CDS |
| AAACTCTCGGTTGTTACCAG+AGG | 0.674396 | 2_4:+40430865 | Msa0328230:CDS |
| ATGTAACCATATCTACTTGG+TGG | 0.675557 | 2_4:-40430497 | None:intergenic |
| GCGGTGCAAGGTGCAAAATG+GGG | 0.677118 | 2_4:+40430037 | Msa0328230:CDS |
| AGAAACTTACATGGTCCATG+AGG | 0.678371 | 2_4:-40428355 | None:intergenic |
| CTATGTTTAGGAATTTAATG+CGG | 0.686715 | 2_4:+40430007 | Msa0328230:intron |
| AATGAAACAGAACAAGAACA+GGG | 0.696176 | 2_4:+40431158 | Msa0328230:three_prime_UTR |
| TGTCATCAAATCCACCACGC+CGG | 0.721333 | 2_4:+40428061 | Msa0328230:five_prime_UTR |
| GCAAGGAGAGACTTTCCCTG+GGG | 0.751555 | 2_4:+40430345 | Msa0328230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTTTTGATATGAAT+AGG | + | chr2_4:40428481-40428500 | Msa0328230:intron | 10.0% |
| !! | ATTACTTTAACAACAAAAAA+AGG | + | chr2_4:40428184-40428203 | Msa0328230:five_prime_UTR | 15.0% |
| !!! | TACAATTTTATGAACTAAAA+TGG | + | chr2_4:40429220-40429239 | Msa0328230:intron | 15.0% |
| !!! | TTTTCTAAATAGTAGAATAT+AGG | + | chr2_4:40429722-40429741 | Msa0328230:intron | 15.0% |
| !! | TAAAGTAAGATATGAAATTC+AGG | - | chr2_4:40428291-40428310 | None:intergenic | 20.0% |
| !!! | AAAGAAAATAGATTTGAGTT+TGG | + | chr2_4:40428684-40428703 | Msa0328230:CDS | 20.0% |
| !!! | AAGAAAATAGATTTGAGTTT+GGG | + | chr2_4:40428685-40428704 | Msa0328230:CDS | 20.0% |
| !! | ATAGCTTATGCAAATAAATA+AGG | + | chr2_4:40428798-40428817 | Msa0328230:intron | 20.0% |
| !!! | AAATAAATAAGGTTTTACGT+TGG | + | chr2_4:40428809-40428828 | Msa0328230:intron | 20.0% |
| !!! | TTTTTTAGTTGAAGATCAAA+AGG | + | chr2_4:40429293-40429312 | Msa0328230:intron | 20.0% |
| !!! | TTGTATGTTTTTGAATTCTT+TGG | + | chr2_4:40429451-40429470 | Msa0328230:intron | 20.0% |
| !!! | TTTTTTTTTGAAGGAACAAT+AGG | + | chr2_4:40429821-40429840 | Msa0328230:intron | 20.0% |
| !! | GATATATTGATATCTACAAA+AGG | + | chr2_4:40429890-40429909 | Msa0328230:intron | 20.0% |
| !! | GATCTAGTTAAAAAAAATTC+AGG | + | chr2_4:40430108-40430127 | Msa0328230:intron | 20.0% |
| !! | ATACCACAAAAATTACAAAA+TGG | - | chr2_4:40431067-40431086 | None:intergenic | 20.0% |
| !! | CTCGTTATAAATAAAGAATA+TGG | - | chr2_4:40431233-40431252 | None:intergenic | 20.0% |
| !!! | CATATTCTTTATTTATAACG+AGG | + | chr2_4:40431231-40431250 | Msa0328230:three_prime_UTR | 20.0% |
| !!! | TTTGAGAAGCATAAAGTTTT+GGG | - | chr2_4:40428140-40428159 | None:intergenic | 25.0% |
| !!! | ATTTGAGAAGCATAAAGTTT+TGG | - | chr2_4:40428141-40428160 | None:intergenic | 25.0% |
| ! | AGATTGAAAGAATAGGTTAA+TGG | - | chr2_4:40428224-40428243 | None:intergenic | 25.0% |
| ! | TTCATCTAGATTGAAAGAAT+AGG | - | chr2_4:40428231-40428250 | None:intergenic | 25.0% |
| !! | TGAAATTCAGGTTTATGAAT+TGG | - | chr2_4:40428279-40428298 | None:intergenic | 25.0% |
| !! | TTTGGTGCATTTGTAATTAT+GGG | - | chr2_4:40428328-40428347 | None:intergenic | 25.0% |
| !!! | TTTTGGTGCATTTGTAATTA+TGG | - | chr2_4:40428329-40428348 | None:intergenic | 25.0% |
| ! | GTAAAAAGAAGAAACTTACA+TGG | - | chr2_4:40428367-40428386 | None:intergenic | 25.0% |
| !! | TTTTGATATGAATAGGTCTA+TGG | + | chr2_4:40428488-40428507 | Msa0328230:intron | 25.0% |
| ! | TATGAAGAATAAGAAGATGA+AGG | + | chr2_4:40428548-40428567 | Msa0328230:CDS | 25.0% |
| ! | TAGTTAGTATTCAATTTGTC+AGG | + | chr2_4:40429047-40429066 | Msa0328230:intron | 25.0% |
| !!! | TCACATTAGTCATTTTAGAT+CGG | - | chr2_4:40429181-40429200 | None:intergenic | 25.0% |
| ! | AGAAGAAATAAAGCTTAACA+TGG | + | chr2_4:40429318-40429337 | Msa0328230:intron | 25.0% |
| !! | ATCATTCATTTGTACTTTTG+TGG | + | chr2_4:40429385-40429404 | Msa0328230:intron | 25.0% |
| ! | CCTTATGTATGAAAAAACAT+TGG | - | chr2_4:40429560-40429579 | None:intergenic | 25.0% |
| !!! | CCAATGTTTTTTCATACATA+AGG | + | chr2_4:40429557-40429576 | Msa0328230:intron | 25.0% |
| !!! | CATTTGACTTGATTAACAAT+AGG | + | chr2_4:40429783-40429802 | Msa0328230:intron | 25.0% |
| ! | GCATTAAATTCCTAAACATA+GGG | - | chr2_4:40430008-40430027 | None:intergenic | 25.0% |
| ! | CTATGTTTAGGAATTTAATG+CGG | + | chr2_4:40430007-40430026 | Msa0328230:intron | 25.0% |
| ! | AATTTAATGCGGTAAAAAAG+CGG | + | chr2_4:40430018-40430037 | Msa0328230:CDS | 25.0% |
| ! | TATAAGTCGAATTATAGTCA+AGG | - | chr2_4:40430219-40430238 | None:intergenic | 25.0% |
| ! | ATAATTCGACTTATAGTGTT+TGG | + | chr2_4:40430224-40430243 | Msa0328230:intron | 25.0% |
| !!! | TCAATAATAAAAAGTGTCGT+AGG | + | chr2_4:40430292-40430311 | Msa0328230:CDS | 25.0% |
| ! | AAATTTATGTGTTGCCAAAT+TGG | + | chr2_4:40430523-40430542 | Msa0328230:CDS | 25.0% |
| !!! | GTTAAGTTGAAGTAACTTTA+TGG | + | chr2_4:40430620-40430639 | Msa0328230:intron | 25.0% |
| ! | TAGTTAATTATGATCCAATC+TGG | + | chr2_4:40430929-40430948 | Msa0328230:three_prime_UTR | 25.0% |
| !! | CTTCCATTTTGTAATTTTTG+TGG | + | chr2_4:40431061-40431080 | Msa0328230:three_prime_UTR | 25.0% |
| ! | TAGTCAAATTCAATAAAAGG+AGG | - | chr2_4:40431103-40431122 | None:intergenic | 25.0% |
| ! | GCATAGTCAAATTCAATAAA+AGG | - | chr2_4:40431106-40431125 | None:intergenic | 25.0% |
| ! | GCATATTATCCATTCCATTT+TGG | + | chr2_4:40428024-40428043 | Msa0328230:five_prime_UTR | 30.0% |
| ! | TATTATCCATTCCATTTTGG+TGG | + | chr2_4:40428027-40428046 | Msa0328230:five_prime_UTR | 30.0% |
| !! | TTTTGATGACTTCTACTTTC+CGG | - | chr2_4:40428083-40428102 | None:intergenic | 30.0% |
| !!! | ATAAAGTTTTGGGAAGAACA+TGG | - | chr2_4:40428130-40428149 | None:intergenic | 30.0% |
| TGAATTGGAATAGTTGACAT+AGG | - | chr2_4:40428264-40428283 | None:intergenic | 30.0% | |
| TCAAAAAGAAGTCAATCCAA+AGG | + | chr2_4:40428938-40428957 | Msa0328230:intron | 30.0% | |
| CAAAAAGAAGTCAATCCAAA+GGG | + | chr2_4:40428939-40428958 | Msa0328230:intron | 30.0% | |
| AGAACAAATCGACTAACTAA+GGG | - | chr2_4:40428965-40428984 | None:intergenic | 30.0% | |
| AAGAACAAATCGACTAACTA+AGG | - | chr2_4:40428966-40428985 | None:intergenic | 30.0% | |
| GTATTCAATTTGTCAGGATT+AGG | + | chr2_4:40429053-40429072 | Msa0328230:intron | 30.0% | |
| TTTGTCAGGATTAGGTTAAT+TGG | + | chr2_4:40429061-40429080 | Msa0328230:intron | 30.0% | |
| ! | TTCGATCATATTAGTCCTTT+TGG | + | chr2_4:40429132-40429151 | Msa0328230:intron | 30.0% |
| ! | TCGATCATATTAGTCCTTTT+GGG | + | chr2_4:40429133-40429152 | Msa0328230:intron | 30.0% |
| ! | ATTTTGAATAGTGTCCCAAA+AGG | - | chr2_4:40429150-40429169 | None:intergenic | 30.0% |
| GACTATAAACCAAATCAAGA+TGG | + | chr2_4:40429682-40429701 | Msa0328230:intron | 30.0% | |
| AGGAACAATAGGTAAGAATT+TGG | + | chr2_4:40429832-40429851 | Msa0328230:intron | 30.0% | |
| GGAACAATAGGTAAGAATTT+GGG | + | chr2_4:40429833-40429852 | Msa0328230:intron | 30.0% | |
| TAACAAGAATCCCTATGTTT+AGG | + | chr2_4:40429995-40430014 | Msa0328230:intron | 30.0% | |
| CGCATTAAATTCCTAAACAT+AGG | - | chr2_4:40430009-40430028 | None:intergenic | 30.0% | |
| TGTTTGGATTCATGTTTATC+AGG | + | chr2_4:40430240-40430259 | Msa0328230:intron | 30.0% | |
| GTCGAAAATGCAAAATCTAA+TGG | + | chr2_4:40430587-40430606 | Msa0328230:CDS | 30.0% | |
| TAATAATCCACAGACAAATC+AGG | - | chr2_4:40430652-40430671 | None:intergenic | 30.0% | |
| TGCATGTTGACAGAAATAAT+AGG | + | chr2_4:40430694-40430713 | Msa0328230:CDS | 30.0% | |
| ACAGTTATTGTACCAAAAGA+TGG | + | chr2_4:40430722-40430741 | Msa0328230:CDS | 30.0% | |
| CAGTTATTGTACCAAAAGAT+GGG | + | chr2_4:40430723-40430742 | Msa0328230:CDS | 30.0% | |
| !! | CTTTGAGGTAATGTAATTGT+TGG | + | chr2_4:40430746-40430765 | Msa0328230:intron | 30.0% |
| GCATGTGAAATCAATAACTA+TGG | + | chr2_4:40430807-40430826 | Msa0328230:intron | 30.0% | |
| ! | TTTCAACCATCTGAAATTGA+CGG | - | chr2_4:40430841-40430860 | None:intergenic | 30.0% |
| GTATACCTCAAATGATTTAC+AGG | - | chr2_4:40430990-40431009 | None:intergenic | 30.0% | |
| GACATCCATACATAAAAAGA+TGG | - | chr2_4:40431042-40431061 | None:intergenic | 30.0% | |
| TATGCATACTCAAATGCATT+TGG | + | chr2_4:40431121-40431140 | Msa0328230:three_prime_UTR | 30.0% | |
| TAATGAAACAGAACAAGAAC+AGG | + | chr2_4:40431157-40431176 | Msa0328230:three_prime_UTR | 30.0% | |
| AATGAAACAGAACAAGAACA+GGG | + | chr2_4:40431158-40431177 | Msa0328230:three_prime_UTR | 30.0% | |
| GTGCATTTGTAATTATGGGT+TGG | - | chr2_4:40428324-40428343 | None:intergenic | 35.0% | |
| GAAGAATAAGAAGATGAAGG+AGG | + | chr2_4:40428551-40428570 | Msa0328230:CDS | 35.0% | |
| ! | CCACAACTTTAGGAACAATT+GGG | - | chr2_4:40428599-40428618 | None:intergenic | 35.0% |
| ! | TCCACAACTTTAGGAACAAT+TGG | - | chr2_4:40428600-40428619 | None:intergenic | 35.0% |
| AAACCATCTTCCACAACTTT+AGG | - | chr2_4:40428609-40428628 | None:intergenic | 35.0% | |
| TTAATCAACTCTGTTTCCGA+CGG | - | chr2_4:40428666-40428685 | None:intergenic | 35.0% | |
| ! | TGTGCTTGATGAAGAGTTTT+GGG | + | chr2_4:40428728-40428747 | Msa0328230:CDS | 35.0% |
| TTGGGTATGTCTTAAACTGT+TGG | + | chr2_4:40428746-40428765 | Msa0328230:intron | 35.0% | |
| ! | TCATTTCATGCGTCTTTTAG+TGG | + | chr2_4:40429247-40429266 | Msa0328230:intron | 35.0% |
| AAAATGTGTTCCTTTCATCG+TGG | + | chr2_4:40429600-40429619 | Msa0328230:intron | 35.0% | |
| AACTTGTGTTGAGCATATTG+TGG | + | chr2_4:40429642-40429661 | Msa0328230:intron | 35.0% | |
| TGACATCATCCATCTTGATT+TGG | - | chr2_4:40429694-40429713 | None:intergenic | 35.0% | |
| AAATGATTTACACCCACAAC+CGG | - | chr2_4:40429768-40429787 | None:intergenic | 35.0% | |
| !! | CAAAAGGAAATTTGCTGATC+AGG | + | chr2_4:40429906-40429925 | Msa0328230:CDS | 35.0% |
| CCAGTGTATAGTACTAAGTA+AGG | - | chr2_4:40429955-40429974 | None:intergenic | 35.0% | |
| CCTTACTTAGTACTATACAC+TGG | + | chr2_4:40429952-40429971 | Msa0328230:intron | 35.0% | |
| TCATGTTTATCAGGTGAGAA+AGG | + | chr2_4:40430249-40430268 | Msa0328230:intron | 35.0% | |
| ! | AATATCCGATATTTGCTGCA+AGG | + | chr2_4:40430328-40430347 | Msa0328230:CDS | 35.0% |
| AGTCATCATATCATTTCTGC+AGG | + | chr2_4:40430433-40430452 | Msa0328230:intron | 35.0% | |
| CTGTTTATGCTGCAACAAAA+AGG | - | chr2_4:40430473-40430492 | None:intergenic | 35.0% | |
| ATGTAACCATATCTACTTGG+TGG | - | chr2_4:40430500-40430519 | None:intergenic | 35.0% | |
| GCAATGTAACCATATCTACT+TGG | - | chr2_4:40430503-40430522 | None:intergenic | 35.0% | |
| ! | TTTGTCTGTGGATTATTAGC+AGG | + | chr2_4:40430654-40430673 | Msa0328230:intron | 35.0% |
| ! | TTTTGGTACAATAACTGTCC+AGG | - | chr2_4:40430720-40430739 | None:intergenic | 35.0% |
| AATTTGCAACTGTTCCAGAT+TGG | - | chr2_4:40430946-40430965 | None:intergenic | 35.0% | |
| CAGTTCCTGTAAATCATTTG+AGG | + | chr2_4:40430982-40431001 | Msa0328230:three_prime_UTR | 35.0% | |
| !! | CACGCATATACATTGACTTA+GGG | - | chr2_4:40431012-40431031 | None:intergenic | 35.0% |
| !! | ACACGCATATACATTGACTT+AGG | - | chr2_4:40431013-40431032 | None:intergenic | 35.0% |
| AAGTCAATGTATATGCGTGT+AGG | + | chr2_4:40431013-40431032 | Msa0328230:three_prime_UTR | 35.0% | |
| GCACCAAAATTACATCCTCA+TGG | + | chr2_4:40428340-40428359 | Msa0328230:CDS | 40.0% | |
| ! | GGTCCATGAGGATGTAATTT+TGG | - | chr2_4:40428346-40428365 | None:intergenic | 40.0% |
| AGAAACTTACATGGTCCATG+AGG | - | chr2_4:40428358-40428377 | None:intergenic | 40.0% | |
| CCCAATTGTTCCTAAAGTTG+TGG | + | chr2_4:40428596-40428615 | Msa0328230:CDS | 40.0% | |
| GTTCCTAAAGTTGTGGAAGA+TGG | + | chr2_4:40428603-40428622 | Msa0328230:CDS | 40.0% | |
| ! | CGAATGGTCTTCGATTTGAT+CGG | + | chr2_4:40428634-40428653 | Msa0328230:CDS | 40.0% |
| ! | CTGTGCTTGATGAAGAGTTT+TGG | + | chr2_4:40428727-40428746 | Msa0328230:CDS | 40.0% |
| CTGTTGGATAGAAAGACGTT+TGG | + | chr2_4:40428762-40428781 | Msa0328230:intron | 40.0% | |
| ! | TTTCATGCGTCTTTTAGTGG+TGG | + | chr2_4:40429250-40429269 | Msa0328230:intron | 40.0% |
| GGGAGAATCGAACATATGAA+AGG | + | chr2_4:40429508-40429527 | Msa0328230:CDS | 40.0% | |
| AACACAACAACCACGATGAA+AGG | - | chr2_4:40429613-40429632 | None:intergenic | 40.0% | |
| AGTAATCTGAATGACCCTAC+CGG | + | chr2_4:40429746-40429765 | Msa0328230:intron | 40.0% | |
| !! | AGGAAATTTGCTGATCAGGT+AGG | + | chr2_4:40429910-40429929 | Msa0328230:intron | 40.0% |
| TTTGCTGATCAGGTAGGAAT+CGG | + | chr2_4:40429916-40429935 | Msa0328230:intron | 40.0% | |
| TCTCTCCTTGCAGCAAATAT+CGG | - | chr2_4:40430336-40430355 | None:intergenic | 40.0% | |
| AAAGAATGAGTAGTACCCCA+GGG | - | chr2_4:40430363-40430382 | None:intergenic | 40.0% | |
| AGAACACCACCAAGTAGATA+TGG | + | chr2_4:40430491-40430510 | Msa0328230:CDS | 40.0% | |
| ATTATTAGCAGGTGTGAGTC+AGG | + | chr2_4:40430665-40430684 | Msa0328230:intron | 40.0% | |
| GTTGACAGAAATAATAGGCC+TGG | + | chr2_4:40430699-40430718 | Msa0328230:CDS | 40.0% | |
| ! | TTACCTCAAAGCCCATCTTT+TGG | - | chr2_4:40430737-40430756 | None:intergenic | 40.0% |
| ACTTCTCCGTCAATTTCAGA+TGG | + | chr2_4:40430832-40430851 | Msa0328230:intron | 40.0% | |
| TGGTTGAAACTGCAAACTCT+CGG | + | chr2_4:40430852-40430871 | Msa0328230:CDS | 40.0% | |
| TTTACAGGAACTGAAGCAGT+TGG | - | chr2_4:40430975-40430994 | None:intergenic | 40.0% | |
| ! | GGCGTCCATCTTTTTATGTA+TGG | + | chr2_4:40431034-40431053 | Msa0328230:three_prime_UTR | 40.0% |
| AGTCAGCCACCAAAATGGAA+TGG | - | chr2_4:40428036-40428055 | None:intergenic | 45.0% | |
| !! | ATTCCATTTTGGTGGCTGAC+TGG | + | chr2_4:40428035-40428054 | Msa0328230:five_prime_UTR | 45.0% |
| GAAGATGGTTTGAGCTCGAA+TGG | + | chr2_4:40428618-40428637 | Msa0328230:CDS | 45.0% | |
| !! | AGTTTGGGCAGTTTGTTGCT+AGG | + | chr2_4:40428700-40428719 | Msa0328230:CDS | 45.0% |
| !! | GTTTGGGCAGTTTGTTGCTA+GGG | + | chr2_4:40428701-40428720 | Msa0328230:CDS | 45.0% |
| GCTAAGGGCAGAAAGTCATT+GGG | + | chr2_4:40429488-40429507 | Msa0328230:CDS | 45.0% | |
| ATTTACACCCACAACCGGTA+GGG | - | chr2_4:40429763-40429782 | None:intergenic | 45.0% | |
| GAAAGAATGAGTAGTACCCC+AGG | - | chr2_4:40430364-40430383 | None:intergenic | 45.0% | |
| TGCTGTTCTGTCTAGACTGA+TGG | + | chr2_4:40430389-40430408 | Msa0328230:intron | 45.0% | |
| ! | GTTTACGCCTGATTTGTCTG+TGG | + | chr2_4:40430642-40430661 | Msa0328230:intron | 45.0% |
| ! | GTACCAAAAGATGGGCTTTG+AGG | + | chr2_4:40430731-40430750 | Msa0328230:CDS | 45.0% |
| AAACTCTCGGTTGTTACCAG+AGG | + | chr2_4:40430865-40430884 | Msa0328230:CDS | 45.0% | |
| CGTAGCAAGTATGTTTCCTC+TGG | - | chr2_4:40430884-40430903 | None:intergenic | 45.0% | |
| !! | TAAAGTAATTAAATTAAATT+AGG | - | chr2_4:40428173-40428192 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+AGG | + | chr2_4:40429812-40429831 | Msa0328230:intron | 5.0% |
| TGTCATCAAATCCACCACGC+CGG | + | chr2_4:40428061-40428080 | Msa0328230:five_prime_UTR | 50.0% | |
| ATGACTTCTACTTTCCGGCG+TGG | - | chr2_4:40428078-40428097 | None:intergenic | 50.0% | |
| ATTTGATCGGTTGCAGCCGT+CGG | + | chr2_4:40428647-40428666 | Msa0328230:CDS | 50.0% | |
| TCGACTAACTAAGGGCCCTT+TGG | - | chr2_4:40428957-40428976 | None:intergenic | 50.0% | |
| TTCTTTGGTAGACAGCAGCC+TGG | + | chr2_4:40429466-40429485 | Msa0328230:intron | 50.0% | |
| ATGACTTTCTGCCCTTAGCC+AGG | - | chr2_4:40429487-40429506 | None:intergenic | 50.0% | |
| GGCTAAGGGCAGAAAGTCAT+TGG | + | chr2_4:40429487-40429506 | Msa0328230:CDS | 50.0% | |
| ! | TGAATGACCCTACCGGTTGT+GGG | + | chr2_4:40429753-40429772 | Msa0328230:intron | 50.0% |
| GATTTACACCCACAACCGGT+AGG | - | chr2_4:40429764-40429783 | None:intergenic | 50.0% | |
| TGCGGTAAAAAAGCGGTGCA+AGG | + | chr2_4:40430025-40430044 | Msa0328230:CDS | 50.0% | |
| AAGCGGTGCAAGGTGCAAAA+TGG | + | chr2_4:40430035-40430054 | Msa0328230:CDS | 50.0% | |
| AGCGGTGCAAGGTGCAAAAT+GGG | + | chr2_4:40430036-40430055 | Msa0328230:CDS | 50.0% | |
| TGCAAGGAGAGACTTTCCCT+GGG | + | chr2_4:40430344-40430363 | Msa0328230:CDS | 50.0% | |
| !! | CCAAATTGGCTCGTCGACAA+GGG | + | chr2_4:40430537-40430556 | Msa0328230:CDS | 50.0% |
| TCGCCAGTCAGCCACCAAAA+TGG | - | chr2_4:40428041-40428060 | None:intergenic | 55.0% | |
| ACTTCTACTTTCCGGCGTGG+TGG | - | chr2_4:40428075-40428094 | None:intergenic | 55.0% | |
| GTAGACAGCAGCCTGGCTAA+GGG | + | chr2_4:40429473-40429492 | Msa0328230:intron | 55.0% | |
| ! | CTGAATGACCCTACCGGTTG+TGG | + | chr2_4:40429752-40429771 | Msa0328230:intron | 55.0% |
| GCTGATCAGGTAGGAATCGG+CGG | + | chr2_4:40429919-40429938 | Msa0328230:intron | 55.0% | |
| GCGGTGCAAGGTGCAAAATG+GGG | + | chr2_4:40430037-40430056 | Msa0328230:CDS | 55.0% | |
| CAGCTGCGCATGCATTATCG+CGG | + | chr2_4:40430061-40430080 | Msa0328230:CDS | 55.0% | |
| CTGCAAGGAGAGACTTTCCC+TGG | + | chr2_4:40430343-40430362 | Msa0328230:CDS | 55.0% | |
| GCAAGGAGAGACTTTCCCTG+GGG | + | chr2_4:40430345-40430364 | Msa0328230:CDS | 55.0% | |
| !! | GCCAAATTGGCTCGTCGACA+AGG | + | chr2_4:40430536-40430555 | Msa0328230:CDS | 55.0% |
| CCCTTGTCGACGAGCCAATT+TGG | - | chr2_4:40430540-40430559 | None:intergenic | 55.0% | |
| GGTAGACAGCAGCCTGGCTA+AGG | + | chr2_4:40429472-40429491 | Msa0328230:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 40428018 | 40431275 | 40428018 | ID=Msa0328230;Name=Msa0328230 |
| chr2_4 | mRNA | 40428018 | 40431275 | 40428018 | ID=Msa0328230-mRNA-1;Parent=Msa0328230;Name=Msa0328230-mRNA-1;_AED=0.11;_eAED=0.11;_QI=228|1|1|1|1|0.88|9|359|308 |
| chr2_4 | exon | 40428018 | 40428367 | 40428018 | ID=Msa0328230-mRNA-1:exon:12350;Parent=Msa0328230-mRNA-1 |
| chr2_4 | exon | 40428503 | 40428749 | 40428503 | ID=Msa0328230-mRNA-1:exon:12351;Parent=Msa0328230-mRNA-1 |
| chr2_4 | exon | 40429477 | 40429529 | 40429477 | ID=Msa0328230-mRNA-1:exon:12352;Parent=Msa0328230-mRNA-1 |
| chr2_4 | exon | 40429891 | 40429927 | 40429891 | ID=Msa0328230-mRNA-1:exon:12353;Parent=Msa0328230-mRNA-1 |
| chr2_4 | exon | 40430017 | 40430082 | 40430017 | ID=Msa0328230-mRNA-1:exon:12354;Parent=Msa0328230-mRNA-1 |
| chr2_4 | exon | 40430262 | 40430366 | 40430262 | ID=Msa0328230-mRNA-1:exon:12355;Parent=Msa0328230-mRNA-1 |
| chr2_4 | exon | 40430455 | 40430608 | 40430455 | ID=Msa0328230-mRNA-1:exon:12356;Parent=Msa0328230-mRNA-1 |
| chr2_4 | exon | 40430676 | 40430752 | 40430676 | ID=Msa0328230-mRNA-1:exon:12357;Parent=Msa0328230-mRNA-1 |
| chr2_4 | exon | 40430851 | 40431275 | 40430851 | ID=Msa0328230-mRNA-1:exon:12358;Parent=Msa0328230-mRNA-1 |
| chr2_4 | five_prime_UTR | 40428018 | 40428245 | 40428018 | ID=Msa0328230-mRNA-1:five_prime_utr;Parent=Msa0328230-mRNA-1 |
| chr2_4 | CDS | 40428246 | 40428367 | 40428246 | ID=Msa0328230-mRNA-1:cds;Parent=Msa0328230-mRNA-1 |
| chr2_4 | CDS | 40428503 | 40428749 | 40428503 | ID=Msa0328230-mRNA-1:cds;Parent=Msa0328230-mRNA-1 |
| chr2_4 | CDS | 40429477 | 40429529 | 40429477 | ID=Msa0328230-mRNA-1:cds;Parent=Msa0328230-mRNA-1 |
| chr2_4 | CDS | 40429891 | 40429927 | 40429891 | ID=Msa0328230-mRNA-1:cds;Parent=Msa0328230-mRNA-1 |
| chr2_4 | CDS | 40430017 | 40430082 | 40430017 | ID=Msa0328230-mRNA-1:cds;Parent=Msa0328230-mRNA-1 |
| chr2_4 | CDS | 40430262 | 40430366 | 40430262 | ID=Msa0328230-mRNA-1:cds;Parent=Msa0328230-mRNA-1 |
| chr2_4 | CDS | 40430455 | 40430608 | 40430455 | ID=Msa0328230-mRNA-1:cds;Parent=Msa0328230-mRNA-1 |
| chr2_4 | CDS | 40430676 | 40430752 | 40430676 | ID=Msa0328230-mRNA-1:cds;Parent=Msa0328230-mRNA-1 |
| chr2_4 | CDS | 40430851 | 40430916 | 40430851 | ID=Msa0328230-mRNA-1:cds;Parent=Msa0328230-mRNA-1 |
| chr2_4 | three_prime_UTR | 40430917 | 40431275 | 40430917 | ID=Msa0328230-mRNA-1:three_prime_utr;Parent=Msa0328230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
