Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328280 | XP_013463544.1 | 94.352 | 301 | 14 | 1 | 7 | 307 | 1 | 298 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0328280 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0328230 | Msa0328280 | 0.833043 | 6.689459e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328280 | MtrunA17_Chr2g0300621 | 94.352 | 301 | 14 | 1 | 7 | 307 | 1 | 298 | 0.0 | 590 |
| Msa0328280 | MtrunA17_Chr4g0073171 | 28.723 | 188 | 109 | 5 | 115 | 286 | 58 | 236 | 3.24e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328280 | AT2G06025.1 | 58.194 | 299 | 111 | 3 | 7 | 305 | 1 | 285 | 9.61e-121 | 348 |
| Msa0328280 | AT2G06025.6 | 58.194 | 299 | 111 | 3 | 7 | 305 | 1 | 285 | 9.61e-121 | 348 |
| Msa0328280 | AT2G06025.4 | 58.194 | 299 | 111 | 3 | 7 | 305 | 1 | 285 | 9.61e-121 | 348 |
| Msa0328280 | AT2G06025.3 | 58.594 | 256 | 92 | 3 | 7 | 262 | 1 | 242 | 1.78e-102 | 300 |
| Msa0328280 | AT2G06025.5 | 58.594 | 256 | 92 | 3 | 7 | 262 | 1 | 242 | 1.78e-102 | 300 |
| Msa0328280 | AT2G06025.2 | 58.594 | 256 | 92 | 3 | 7 | 262 | 1 | 242 | 1.78e-102 | 300 |
| Msa0328280 | AT2G06025.7 | 55.856 | 222 | 84 | 3 | 7 | 228 | 1 | 208 | 1.76e-81 | 246 |
| Msa0328280 | AT4G28030.1 | 30.583 | 206 | 101 | 7 | 111 | 292 | 58 | 245 | 4.16e-13 | 68.6 |
Find 91 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATTATCCATTCCATTT+TGG | 0.194180 | 2_4:-40488902 | Msa0328280:five_prime_UTR |
| TAAAGTAATTAAATTAAATT+AGG | 0.247120 | 2_4:+40488756 | None:intergenic |
| CCCTTGTCGACGAGCCAATT+TGG | 0.255534 | 2_4:+40486407 | None:intergenic |
| ATTTGAGAAGCATAAAGTTT+TGG | 0.261676 | 2_4:+40488788 | None:intergenic |
| AAACCATCTTCCACAACTTT+AGG | 0.268243 | 2_4:+40488321 | None:intergenic |
| CTGCAAGGAGAGACTTTCCC+TGG | 0.270902 | 2_4:-40486601 | Msa0328280:CDS |
| AAATTTATGTGTTGCCAAAT+TGG | 0.283413 | 2_4:-40486421 | Msa0328280:CDS |
| TGAAATTCAGGTTTATGAAT+TGG | 0.285497 | 2_4:+40488651 | None:intergenic |
| AAAGAAAATAGATTTGAGTT+TGG | 0.287660 | 2_4:-40488243 | Msa0328280:CDS |
| TAAAGTAAGATATGAAATTC+AGG | 0.293568 | 2_4:+40488639 | None:intergenic |
| CTCATTATAAATAAAGAATA+TGG | 0.297854 | 2_4:+40485716 | None:intergenic |
| GGTCCATGAGGATGTAATTT+TGG | 0.303454 | 2_4:+40488584 | None:intergenic |
| AAGCGGTGCAAGGTGCAAAA+TGG | 0.311231 | 2_4:-40486908 | Msa0328280:CDS |
| TCCACAACTTTAGGAACAAT+TGG | 0.321350 | 2_4:+40488330 | None:intergenic |
| GCATAGTCAAATTCAATAAA+AGG | 0.321610 | 2_4:+40485843 | None:intergenic |
| CAAAAGGAAATTTGCTGATC+AGG | 0.341147 | 2_4:-40487037 | Msa0328280:intron |
| CTGTGCTTGATGAAGAGTTT+TGG | 0.345709 | 2_4:-40488200 | Msa0328280:CDS |
| AAGAAAATAGATTTGAGTTT+GGG | 0.347621 | 2_4:-40488242 | Msa0328280:CDS |
| GTATACCTCAAATGATTTAC+AGG | 0.357644 | 2_4:+40485959 | None:intergenic |
| CTGTTTATGCTGCAACAAAA+AGG | 0.359050 | 2_4:+40486474 | None:intergenic |
| AGATTGAAAGAATAGGTTAA+TGG | 0.369167 | 2_4:+40488706 | None:intergenic |
| TTTGGTGCATTTGTAATTAT+GGG | 0.370191 | 2_4:+40488602 | None:intergenic |
| TATGCATACTCAAATGCATT+TGG | 0.372797 | 2_4:-40485825 | Msa0328280:three_prime_UTR |
| TCGCCAGTCAGCCACCAAAA+TGG | 0.383821 | 2_4:+40488888 | None:intergenic |
| TTACCTCAAAGCCCATCTTT+TGG | 0.386865 | 2_4:+40486210 | None:intergenic |
| GTTCAATCCGTGACTGGAAT+GGG | 0.388919 | 2_4:+40485679 | None:intergenic |
| TCTCTCCTTGCAGCAAATAT+CGG | 0.397446 | 2_4:+40486611 | None:intergenic |
| GGCTAAGGGCAGAAAGTCAT+TGG | 0.397544 | 2_4:-40487452 | Msa0328280:CDS |
| CAGTTCCTGTAAATCATTTG+AGG | 0.405332 | 2_4:-40485964 | Msa0328280:three_prime_UTR |
| AGCGGTGCAAGGTGCAAAAT+GGG | 0.411100 | 2_4:-40486907 | Msa0328280:CDS |
| TAATGAAACAGAACAAGAAC+AGG | 0.417724 | 2_4:-40485789 | Msa0328280:three_prime_UTR |
| GTCGAAAATGCAAAATCTAA+TGG | 0.420526 | 2_4:-40486357 | Msa0328280:intron |
| CATATTCTTTATTTATAATG+AGG | 0.433865 | 2_4:-40485715 | Msa0328280:three_prime_UTR |
| GGTAGACAGCAGCCTGGCTA+AGG | 0.441883 | 2_4:-40487467 | Msa0328280:intron |
| TAGTTAATTATGATCCAATC+TGG | 0.442431 | 2_4:-40486017 | Msa0328280:three_prime_UTR |
| ATGACTTTCTGCCCTTAGCC+AGG | 0.443627 | 2_4:+40487455 | None:intergenic |
| GTTCCTAAAGTTGTGGAAGA+TGG | 0.448306 | 2_4:-40488324 | Msa0328280:CDS |
| AGAACACCACCAAGTAGATA+TGG | 0.454568 | 2_4:-40486453 | Msa0328280:CDS |
| AGTTTGGGCAGTTTGTTGCT+AGG | 0.455295 | 2_4:-40488227 | Msa0328280:CDS |
| AATTTGCAACTGTTCCAGAT+TGG | 0.457980 | 2_4:+40486003 | None:intergenic |
| ATTATTAGCAGGTGTGAGTC+AGG | 0.465979 | 2_4:-40486279 | Msa0328280:intron |
| GTACCAAAAGATGGGCTTTG+AGG | 0.468548 | 2_4:-40486213 | Msa0328280:intron |
| CCACAACTTTAGGAACAATT+GGG | 0.469375 | 2_4:+40488331 | None:intergenic |
| TTCATCTAGATTGAAAGAAT+AGG | 0.471254 | 2_4:+40488699 | None:intergenic |
| ACAGTTATTGTACCAAAAGA+TGG | 0.478573 | 2_4:-40486222 | Msa0328280:CDS |
| GCCAAATTGGCTCGTCGACA+AGG | 0.478860 | 2_4:-40486408 | Msa0328280:CDS |
| ACACGCATATACATTGACTT+AGG | 0.483659 | 2_4:+40485936 | None:intergenic |
| TGCATGTTGACAGAAATAAT+AGG | 0.485408 | 2_4:-40486250 | Msa0328280:CDS |
| TCATGTTTATCAGGTGAGAA+AGG | 0.487782 | 2_4:-40486695 | Msa0328280:intron |
| TGAATTGGAATAGTTGACAT+AGG | 0.492624 | 2_4:+40488666 | None:intergenic |
| CGTAGCAAGTATGTTTCCTC+TGG | 0.493901 | 2_4:+40486064 | None:intergenic |
| GATATATTGATATCTACAAA+AGG | 0.499748 | 2_4:-40487053 | Msa0328280:CDS |
| CCCAATTGTTCCTAAAGTTG+TGG | 0.500678 | 2_4:-40488331 | Msa0328280:CDS |
| GTTTGGGCAGTTTGTTGCTA+GGG | 0.500725 | 2_4:-40488226 | Msa0328280:CDS |
| AGTTCAATCCGTGACTGGAA+TGG | 0.504230 | 2_4:+40485678 | None:intergenic |
| CGAATGGTCTTCGATTTGAT+CGG | 0.516980 | 2_4:-40488293 | Msa0328280:CDS |
| CACGCATATACATTGACTTA+GGG | 0.518548 | 2_4:+40485937 | None:intergenic |
| GCAATGTAACCATATCTACT+TGG | 0.536879 | 2_4:+40486444 | None:intergenic |
| GCACCAAAATTACATCCTCA+TGG | 0.537776 | 2_4:-40488587 | Msa0328280:CDS |
| GTTGACAGAAATAATAGGCC+TGG | 0.539017 | 2_4:-40486245 | Msa0328280:CDS |
| TATGAAGAATAAGAAGATGA+AGG | 0.539557 | 2_4:-40488379 | Msa0328280:CDS |
| GTGCATTTGTAATTATGGGT+TGG | 0.548458 | 2_4:+40488606 | None:intergenic |
| CAGTTATTGTACCAAAAGAT+GGG | 0.552741 | 2_4:-40486221 | Msa0328280:CDS |
| GCTAAGGGCAGAAAGTCATT+GGG | 0.553474 | 2_4:-40487451 | Msa0328280:CDS |
| AATATCCGATATTTGCTGCA+AGG | 0.560266 | 2_4:-40486616 | Msa0328280:CDS |
| ATTTGATCGGTTGCAGCCGT+CGG | 0.562541 | 2_4:-40488280 | Msa0328280:CDS |
| TGCAAGGAGAGACTTTCCCT+GGG | 0.571957 | 2_4:-40486600 | Msa0328280:CDS |
| TGGTTGAAACTGCAAACTCT+CGG | 0.577388 | 2_4:-40486093 | Msa0328280:CDS |
| GAAGAATAAGAAGATGAAGG+AGG | 0.579221 | 2_4:-40488376 | Msa0328280:CDS |
| TTAATCAACTCTGTTTCCGA+CGG | 0.588145 | 2_4:+40488264 | None:intergenic |
| TTCTTTGGTAGACAGCAGCC+TGG | 0.588973 | 2_4:-40487473 | Msa0328280:intron |
| TTTACAGGAACTGAAGCAGT+TGG | 0.589966 | 2_4:+40485974 | None:intergenic |
| ACTTCTACTTTCCGGCGTGG+TGG | 0.590556 | 2_4:+40488854 | None:intergenic |
| AGTCAGCCACCAAAATGGAA+TGG | 0.590860 | 2_4:+40488893 | None:intergenic |
| GTAGACAGCAGCCTGGCTAA+GGG | 0.595602 | 2_4:-40487466 | Msa0328280:intron |
| GAAGATGGTTTGAGCTCGAA+TGG | 0.604899 | 2_4:-40488309 | Msa0328280:CDS |
| CCAAATTGGCTCGTCGACAA+GGG | 0.609532 | 2_4:-40486407 | Msa0328280:CDS |
| GGGAGAATCGAACATATGAA+AGG | 0.623790 | 2_4:-40487431 | Msa0328280:intron |
| AAGTCAATGTATATGCGTGT+AGG | 0.627047 | 2_4:-40485933 | Msa0328280:three_prime_UTR |
| TTCAATCCGTGACTGGAATG+GGG | 0.640753 | 2_4:+40485680 | None:intergenic |
| TAGTCAAATTCAATAAAAGG+AGG | 0.655540 | 2_4:+40485846 | None:intergenic |
| ATGACTTCTACTTTCCGGCG+TGG | 0.658502 | 2_4:+40488851 | None:intergenic |
| CAGCTGCGCATGCATTATCG+CGG | 0.671835 | 2_4:-40486882 | Msa0328280:intron |
| AAACTCTCGGTTGTTACCAG+AGG | 0.674396 | 2_4:-40486080 | Msa0328280:CDS |
| ATGTAACCATATCTACTTGG+TGG | 0.675557 | 2_4:+40486447 | None:intergenic |
| GCGGTGCAAGGTGCAAAATG+GGG | 0.677118 | 2_4:-40486906 | Msa0328280:CDS |
| AGAAACTTACATGGTCCATG+AGG | 0.678371 | 2_4:+40488572 | None:intergenic |
| CTATGTTTAGGAATTTAATG+CGG | 0.686715 | 2_4:-40486936 | Msa0328280:intron |
| AATGAAACAGAACAAGAACA+GGG | 0.696176 | 2_4:-40485788 | Msa0328280:three_prime_UTR |
| TGTCATCAAATCCACCACGC+CGG | 0.721333 | 2_4:-40488865 | Msa0328280:five_prime_UTR |
| GCAAGGAGAGACTTTCCCTG+GGG | 0.751555 | 2_4:-40486599 | Msa0328280:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTTTTGATATGAAT+AGG | - | chr2_4:40486155-40486174 | Msa0328280:intron | 10.0% |
| !! | AATTACTTTAACAACAAAAA+AGG | - | chr2_4:40485858-40485877 | Msa0328280:three_prime_UTR | 15.0% |
| !!! | TACAATTTTATGAACTAAAA+TGG | - | chr2_4:40486886-40486905 | Msa0328280:CDS | 15.0% |
| !!! | TTTTCTAAATAGTAGAATAT+AGG | - | chr2_4:40487385-40487404 | Msa0328280:intron | 15.0% |
| !! | CTCATTATAAATAAAGAATA+TGG | + | chr2_4:40488888-40488907 | None:intergenic | 15.0% |
| !!! | CATATTCTTTATTTATAATG+AGG | - | chr2_4:40488886-40488905 | Msa0328280:five_prime_UTR | 15.0% |
| !! | TAAAGTAAGATATGAAATTC+AGG | + | chr2_4:40485965-40485984 | None:intergenic | 20.0% |
| !!! | AAAGAAAATAGATTTGAGTT+TGG | - | chr2_4:40486358-40486377 | Msa0328280:CDS | 20.0% |
| !!! | AAGAAAATAGATTTGAGTTT+GGG | - | chr2_4:40486359-40486378 | Msa0328280:CDS | 20.0% |
| !! | TATGCTTATGCAAATAAATA+AGG | - | chr2_4:40486471-40486490 | Msa0328280:CDS | 20.0% |
| !!! | AAATAAATAAGGTTTTACGT+TGG | - | chr2_4:40486482-40486501 | Msa0328280:CDS | 20.0% |
| !!! | TTTTTTAGTTGAAGATCAAA+AGG | - | chr2_4:40486958-40486977 | Msa0328280:intron | 20.0% |
| !!! | TTGTATGTTTTTGAATTCTT+TGG | - | chr2_4:40487113-40487132 | Msa0328280:intron | 20.0% |
| !!! | TTTTTTTTTGAAGGAACAAT+AGG | - | chr2_4:40487480-40487499 | Msa0328280:intron | 20.0% |
| !! | GATATATTGATATCTACAAA+AGG | - | chr2_4:40487548-40487567 | Msa0328280:intron | 20.0% |
| !! | TGATCTAGTTAAAAAAATTC+AGG | - | chr2_4:40487765-40487784 | Msa0328280:intron | 20.0% |
| !! | ATACCACAAAAATTACAAAA+TGG | + | chr2_4:40488722-40488741 | None:intergenic | 20.0% |
| !!! | TTTGAGAAGCATAAAGTTTT+GGG | + | chr2_4:40485815-40485834 | None:intergenic | 25.0% |
| !!! | ATTTGAGAAGCATAAAGTTT+TGG | + | chr2_4:40485816-40485835 | None:intergenic | 25.0% |
| ! | AGATTGAAAGAATAGGTTAA+TGG | + | chr2_4:40485898-40485917 | None:intergenic | 25.0% |
| ! | TTCATCTAGATTGAAAGAAT+AGG | + | chr2_4:40485905-40485924 | None:intergenic | 25.0% |
| !! | TGAAATTCAGGTTTATGAAT+TGG | + | chr2_4:40485953-40485972 | None:intergenic | 25.0% |
| !! | TTTGGTGCATTTGTAATTAT+GGG | + | chr2_4:40486002-40486021 | None:intergenic | 25.0% |
| !!! | TTTTGGTGCATTTGTAATTA+TGG | + | chr2_4:40486003-40486022 | None:intergenic | 25.0% |
| ! | GTAAAAAGAAGAAACTTACA+TGG | + | chr2_4:40486041-40486060 | None:intergenic | 25.0% |
| !! | TTTTGATATGAATAGGTCTA+TGG | - | chr2_4:40486162-40486181 | Msa0328280:intron | 25.0% |
| ! | TATGAAGAATAAGAAGATGA+AGG | - | chr2_4:40486222-40486241 | Msa0328280:CDS | 25.0% |
| ! | TAGTTAGTATTCAATTTGTC+AGG | - | chr2_4:40486717-40486736 | Msa0328280:intron | 25.0% |
| !!! | TTCGATCATATTAGTCTTTT+GGG | - | chr2_4:40486801-40486820 | Msa0328280:intron | 25.0% |
| !!! | TCACATTAGTCATTTTAGAT+CGG | + | chr2_4:40486848-40486867 | None:intergenic | 25.0% |
| ! | AGAAGAAATAAAGCTTAACA+TGG | - | chr2_4:40486983-40487002 | Msa0328280:intron | 25.0% |
| !! | ATCATTCATTTGTACTTTTG+TGG | - | chr2_4:40487050-40487069 | Msa0328280:CDS | 25.0% |
| ! | CCTTATGTATGAAAAAACAT+TGG | + | chr2_4:40487222-40487241 | None:intergenic | 25.0% |
| !!! | CCAATGTTTTTTCATACATA+AGG | - | chr2_4:40487219-40487238 | Msa0328280:intron | 25.0% |
| !!! | CATTTGACTTGATTAACAAT+AGG | - | chr2_4:40487443-40487462 | Msa0328280:CDS | 25.0% |
| ! | GCATTAAATTCCTAAACATA+GGG | + | chr2_4:40487666-40487685 | None:intergenic | 25.0% |
| ! | CTATGTTTAGGAATTTAATG+CGG | - | chr2_4:40487665-40487684 | Msa0328280:intron | 25.0% |
| ! | AATTTAATGCGGTAAAAAAG+CGG | - | chr2_4:40487676-40487695 | Msa0328280:intron | 25.0% |
| ! | TATAAGTCGAATTATAGTCA+AGG | + | chr2_4:40487876-40487895 | None:intergenic | 25.0% |
| ! | ATAATTCGACTTATAGTGTT+TGG | - | chr2_4:40487881-40487900 | Msa0328280:intron | 25.0% |
| !!! | TCAATAATAAAAAGTGTCGT+AGG | - | chr2_4:40487949-40487968 | Msa0328280:intron | 25.0% |
| ! | AAATTTATGTGTTGCCAAAT+TGG | - | chr2_4:40488180-40488199 | Msa0328280:intron | 25.0% |
| !!! | GTTAAGTTGAAGTAACTTTA+TGG | - | chr2_4:40488277-40488296 | Msa0328280:CDS | 25.0% |
| ! | TAGTTAATTATGATCCAATC+TGG | - | chr2_4:40488584-40488603 | Msa0328280:CDS | 25.0% |
| ! | TAGTCAAATTCAATAAAAGG+AGG | + | chr2_4:40488758-40488777 | None:intergenic | 25.0% |
| ! | GCATAGTCAAATTCAATAAA+AGG | + | chr2_4:40488761-40488780 | None:intergenic | 25.0% |
| ! | GCATATTATCCATTCCATTT+TGG | - | chr2_4:40485699-40485718 | Msa0328280:three_prime_UTR | 30.0% |
| ! | TATTATCCATTCCATTTTGG+TGG | - | chr2_4:40485702-40485721 | Msa0328280:three_prime_UTR | 30.0% |
| !! | TTTTGATGACTTCTACTTTC+CGG | + | chr2_4:40485758-40485777 | None:intergenic | 30.0% |
| !!! | ATAAAGTTTTGGGAAGAACA+TGG | + | chr2_4:40485805-40485824 | None:intergenic | 30.0% |
| TGAATTGGAATAGTTGACAT+AGG | + | chr2_4:40485938-40485957 | None:intergenic | 30.0% | |
| TCAAAAGAAGTCAATCCAAA+GGG | - | chr2_4:40486610-40486629 | Msa0328280:CDS | 30.0% | |
| GAACAAATCGACATAACTAA+GGG | + | chr2_4:40486636-40486655 | None:intergenic | 30.0% | |
| AGAACAAATCGACATAACTA+AGG | + | chr2_4:40486637-40486656 | None:intergenic | 30.0% | |
| GTATTCAATTTGTCAGGATT+AGG | - | chr2_4:40486723-40486742 | Msa0328280:intron | 30.0% | |
| TTTGTCAGGATTAGGTTAAT+TGG | - | chr2_4:40486731-40486750 | Msa0328280:intron | 30.0% | |
| !!! | CTTCGATCATATTAGTCTTT+TGG | - | chr2_4:40486800-40486819 | Msa0328280:intron | 30.0% |
| ! | TTCATTTCATCGTCTTTTAG+TGG | - | chr2_4:40486912-40486931 | Msa0328280:CDS | 30.0% |
| AGACTATAACCAAATCAAGA+TGG | - | chr2_4:40487345-40487364 | Msa0328280:intron | 30.0% | |
| AGGAACAATAGGTAAGAATT+TGG | - | chr2_4:40487491-40487510 | Msa0328280:intron | 30.0% | |
| GGAACAATAGGTAAGAATTT+GGG | - | chr2_4:40487492-40487511 | Msa0328280:intron | 30.0% | |
| TAACAAGAATCCCTATGTTT+AGG | - | chr2_4:40487653-40487672 | Msa0328280:intron | 30.0% | |
| CGCATTAAATTCCTAAACAT+AGG | + | chr2_4:40487667-40487686 | None:intergenic | 30.0% | |
| TGTTTGGATTCATGTTTATC+AGG | - | chr2_4:40487897-40487916 | Msa0328280:intron | 30.0% | |
| GTCGAAAATGCAAAATCTAA+TGG | - | chr2_4:40488244-40488263 | Msa0328280:CDS | 30.0% | |
| TAATAATCCACAGACAAATC+AGG | + | chr2_4:40488309-40488328 | None:intergenic | 30.0% | |
| TGCATGTTGACAGAAATAAT+AGG | - | chr2_4:40488351-40488370 | Msa0328280:CDS | 30.0% | |
| ACAGTTATTGTACCAAAAGA+TGG | - | chr2_4:40488379-40488398 | Msa0328280:CDS | 30.0% | |
| CAGTTATTGTACCAAAAGAT+GGG | - | chr2_4:40488380-40488399 | Msa0328280:CDS | 30.0% | |
| !! | CTTTGAGGTAATGTAATTGT+TGG | - | chr2_4:40488403-40488422 | Msa0328280:CDS | 30.0% |
| GCATGTGAAATCAATAACTA+TGG | - | chr2_4:40488464-40488483 | Msa0328280:intron | 30.0% | |
| ! | TTTCAACCATCTGAAATTGA+CGG | + | chr2_4:40488497-40488516 | None:intergenic | 30.0% |
| GTATACCTCAAATGATTTAC+AGG | + | chr2_4:40488645-40488664 | None:intergenic | 30.0% | |
| GACATCCATACATAAAAAGA+TGG | + | chr2_4:40488697-40488716 | None:intergenic | 30.0% | |
| CCACAAAAATTACAAAATGG+AGG | + | chr2_4:40488719-40488738 | None:intergenic | 30.0% | |
| ! | CCTCCATTTTGTAATTTTTG+TGG | - | chr2_4:40488716-40488735 | Msa0328280:five_prime_UTR | 30.0% |
| TATGCATACTCAAATGCATT+TGG | - | chr2_4:40488776-40488795 | Msa0328280:five_prime_UTR | 30.0% | |
| TAATGAAACAGAACAAGAAC+AGG | - | chr2_4:40488812-40488831 | Msa0328280:five_prime_UTR | 30.0% | |
| AATGAAACAGAACAAGAACA+GGG | - | chr2_4:40488813-40488832 | Msa0328280:five_prime_UTR | 30.0% | |
| GTGCATTTGTAATTATGGGT+TGG | + | chr2_4:40485998-40486017 | None:intergenic | 35.0% | |
| GAAGAATAAGAAGATGAAGG+AGG | - | chr2_4:40486225-40486244 | Msa0328280:CDS | 35.0% | |
| ! | CCACAACTTTAGGAACAATT+GGG | + | chr2_4:40486273-40486292 | None:intergenic | 35.0% |
| ! | TCCACAACTTTAGGAACAAT+TGG | + | chr2_4:40486274-40486293 | None:intergenic | 35.0% |
| AAACCATCTTCCACAACTTT+AGG | + | chr2_4:40486283-40486302 | None:intergenic | 35.0% | |
| TTAATCAACTCTGTTTCCGA+CGG | + | chr2_4:40486340-40486359 | None:intergenic | 35.0% | |
| ! | TGTGCTTGATGAAGAGTTTT+GGG | - | chr2_4:40486402-40486421 | Msa0328280:CDS | 35.0% |
| TGGGTATGTCTTTAAACTGT+TGG | - | chr2_4:40486421-40486440 | Msa0328280:CDS | 35.0% | |
| CTCAAAAGAAGTCAATCCAA+AGG | - | chr2_4:40486609-40486628 | Msa0328280:CDS | 35.0% | |
| ! | ATTTCATCGTCTTTTAGTGG+TGG | - | chr2_4:40486915-40486934 | Msa0328280:CDS | 35.0% |
| AACTTGTGTTGAGCATATTG+TGG | - | chr2_4:40487306-40487325 | Msa0328280:intron | 35.0% | |
| TGACATCATCCATCTTGATT+TGG | + | chr2_4:40487357-40487376 | None:intergenic | 35.0% | |
| TCAAATGATTACACCCACAT+CGG | + | chr2_4:40487430-40487449 | None:intergenic | 35.0% | |
| !! | CAAAAGGAAATTTGCTGATC+AGG | - | chr2_4:40487564-40487583 | Msa0328280:intron | 35.0% |
| CCAGTGTATAGTACTAAGTA+AGG | + | chr2_4:40487613-40487632 | None:intergenic | 35.0% | |
| CCTTACTTAGTACTATACAC+TGG | - | chr2_4:40487610-40487629 | Msa0328280:intron | 35.0% | |
| TCATGTTTATCAGGTGAGAA+AGG | - | chr2_4:40487906-40487925 | Msa0328280:intron | 35.0% | |
| ! | AATATCCGATATTTGCTGCA+AGG | - | chr2_4:40487985-40488004 | Msa0328280:intron | 35.0% |
| AGTCATCATATCATTTCTGC+AGG | - | chr2_4:40488090-40488109 | Msa0328280:intron | 35.0% | |
| CTGTTTATGCTGCAACAAAA+AGG | + | chr2_4:40488130-40488149 | None:intergenic | 35.0% | |
| ATGTAACCATATCTACTTGG+TGG | + | chr2_4:40488157-40488176 | None:intergenic | 35.0% | |
| GCAATGTAACCATATCTACT+TGG | + | chr2_4:40488160-40488179 | None:intergenic | 35.0% | |
| ! | TTTGTCTGTGGATTATTAGC+AGG | - | chr2_4:40488311-40488330 | Msa0328280:CDS | 35.0% |
| ! | TTTTGGTACAATAACTGTCC+AGG | + | chr2_4:40488377-40488396 | None:intergenic | 35.0% |
| AATTCTCCGTCAATTTCAGA+TGG | - | chr2_4:40488488-40488507 | Msa0328280:intron | 35.0% | |
| AATTTGCAACTGTTCCAGAT+TGG | + | chr2_4:40488601-40488620 | None:intergenic | 35.0% | |
| CAGTTCCTGTAAATCATTTG+AGG | - | chr2_4:40488637-40488656 | Msa0328280:CDS | 35.0% | |
| !! | CACGCATATACATTGACTTA+GGG | + | chr2_4:40488667-40488686 | None:intergenic | 35.0% |
| !! | ACACGCATATACATTGACTT+AGG | + | chr2_4:40488668-40488687 | None:intergenic | 35.0% |
| AAGTCAATGTATATGCGTGT+AGG | - | chr2_4:40488668-40488687 | Msa0328280:CDS | 35.0% | |
| GCACCAAAATTACATCCTCA+TGG | - | chr2_4:40486014-40486033 | Msa0328280:three_prime_UTR | 40.0% | |
| ! | GGTCCATGAGGATGTAATTT+TGG | + | chr2_4:40486020-40486039 | None:intergenic | 40.0% |
| AGAAACTTACATGGTCCATG+AGG | + | chr2_4:40486032-40486051 | None:intergenic | 40.0% | |
| CCCAATTGTTCCTAAAGTTG+TGG | - | chr2_4:40486270-40486289 | Msa0328280:CDS | 40.0% | |
| GTTCCTAAAGTTGTGGAAGA+TGG | - | chr2_4:40486277-40486296 | Msa0328280:intron | 40.0% | |
| ! | CGAATGGTCTTCGATTTGAT+CGG | - | chr2_4:40486308-40486327 | Msa0328280:intron | 40.0% |
| ! | CTGTGCTTGATGAAGAGTTT+TGG | - | chr2_4:40486401-40486420 | Msa0328280:CDS | 40.0% |
| GGGAGAATCGAACATATGAA+AGG | - | chr2_4:40487170-40487189 | Msa0328280:intron | 40.0% | |
| ATGTGTTCCTTTCATCATCG+TGG | - | chr2_4:40487264-40487283 | Msa0328280:intron | 40.0% | |
| ACAACAACCACGATGATGAA+AGG | + | chr2_4:40487274-40487293 | None:intergenic | 40.0% | |
| !! | AGGAAATTTGCTGATCAGGT+AGG | - | chr2_4:40487568-40487587 | Msa0328280:intron | 40.0% |
| TTTGCTGATCAGGTAGGAAT+CGG | - | chr2_4:40487574-40487593 | Msa0328280:intron | 40.0% | |
| TCTCTCCTTGCAGCAAATAT+CGG | + | chr2_4:40487993-40488012 | None:intergenic | 40.0% | |
| AAAGAATGAGTAGTACCCCA+GGG | + | chr2_4:40488020-40488039 | None:intergenic | 40.0% | |
| AGAACACCACCAAGTAGATA+TGG | - | chr2_4:40488148-40488167 | Msa0328280:intron | 40.0% | |
| ATTATTAGCAGGTGTGAGTC+AGG | - | chr2_4:40488322-40488341 | Msa0328280:CDS | 40.0% | |
| GTTGACAGAAATAATAGGCC+TGG | - | chr2_4:40488356-40488375 | Msa0328280:CDS | 40.0% | |
| ! | TTACCTCAAAGCCCATCTTT+TGG | + | chr2_4:40488394-40488413 | None:intergenic | 40.0% |
| TGGTTGAAACTGCAAACTCT+CGG | - | chr2_4:40488508-40488527 | Msa0328280:intron | 40.0% | |
| TTTACAGGAACTGAAGCAGT+TGG | + | chr2_4:40488630-40488649 | None:intergenic | 40.0% | |
| ! | GGCGTCCATCTTTTTATGTA+TGG | - | chr2_4:40488689-40488708 | Msa0328280:exon | 40.0% |
| AGTCAGCCACCAAAATGGAA+TGG | + | chr2_4:40485711-40485730 | None:intergenic | 45.0% | |
| !! | ATTCCATTTTGGTGGCTGAC+TGG | - | chr2_4:40485710-40485729 | Msa0328280:three_prime_UTR | 45.0% |
| GAAGATGGTTTGAGCTCGAA+TGG | - | chr2_4:40486292-40486311 | Msa0328280:intron | 45.0% | |
| !! | AGTTTGGGCAGTTTGTTGCT+AGG | - | chr2_4:40486374-40486393 | Msa0328280:CDS | 45.0% |
| !! | GTTTGGGCAGTTTGTTGCTA+GGG | - | chr2_4:40486375-40486394 | Msa0328280:CDS | 45.0% |
| GCTAAGGGCAGAAAGTCATT+GGG | - | chr2_4:40487150-40487169 | Msa0328280:intron | 45.0% | |
| TGATTACACCCACATCGGTA+GGG | + | chr2_4:40487425-40487444 | None:intergenic | 45.0% | |
| ATGATTACACCCACATCGGT+AGG | + | chr2_4:40487426-40487445 | None:intergenic | 45.0% | |
| GAAAGAATGAGTAGTACCCC+AGG | + | chr2_4:40488021-40488040 | None:intergenic | 45.0% | |
| TGCTGTTCTGTCTAGACTGA+TGG | - | chr2_4:40488046-40488065 | Msa0328280:intron | 45.0% | |
| ! | GTTTACGCCTGATTTGTCTG+TGG | - | chr2_4:40488299-40488318 | Msa0328280:CDS | 45.0% |
| ! | GTACCAAAAGATGGGCTTTG+AGG | - | chr2_4:40488388-40488407 | Msa0328280:CDS | 45.0% |
| AAACTCTCGGTTGTTACCAG+AGG | - | chr2_4:40488521-40488540 | Msa0328280:intron | 45.0% | |
| CGTAGCAAGTATGTTTCCTC+TGG | + | chr2_4:40488540-40488559 | None:intergenic | 45.0% | |
| !! | TAAAGTAATTAAATTAAATT+AGG | + | chr2_4:40485848-40485867 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTTTTTTTTGA+AGG | - | chr2_4:40487471-40487490 | Msa0328280:intron | 5.0% |
| TGTCATCAAATCCACCACGC+CGG | - | chr2_4:40485736-40485755 | Msa0328280:three_prime_UTR | 50.0% | |
| ATGACTTCTACTTTCCGGCG+TGG | + | chr2_4:40485753-40485772 | None:intergenic | 50.0% | |
| ATTTGATCGGTTGCAGCCGT+CGG | - | chr2_4:40486321-40486340 | Msa0328280:intron | 50.0% | |
| CGACATAACTAAGGGCCCTT+TGG | + | chr2_4:40486628-40486647 | None:intergenic | 50.0% | |
| TTCTTTGGTAGACAGCAGCC+TGG | - | chr2_4:40487128-40487147 | Msa0328280:intron | 50.0% | |
| ATGACTTTCTGCCCTTAGCC+AGG | + | chr2_4:40487149-40487168 | None:intergenic | 50.0% | |
| GGCTAAGGGCAGAAAGTCAT+TGG | - | chr2_4:40487149-40487168 | Msa0328280:intron | 50.0% | |
| ATCTGATGACCCTACCGATG+TGG | - | chr2_4:40487413-40487432 | Msa0328280:intron | 50.0% | |
| TCTGATGACCCTACCGATGT+GGG | - | chr2_4:40487414-40487433 | Msa0328280:intron | 50.0% | |
| TGCGGTAAAAAAGCGGTGCA+AGG | - | chr2_4:40487683-40487702 | Msa0328280:intron | 50.0% | |
| AAGCGGTGCAAGGTGCAAAA+TGG | - | chr2_4:40487693-40487712 | Msa0328280:intron | 50.0% | |
| AGCGGTGCAAGGTGCAAAAT+GGG | - | chr2_4:40487694-40487713 | Msa0328280:intron | 50.0% | |
| TGCAAGGAGAGACTTTCCCT+GGG | - | chr2_4:40488001-40488020 | Msa0328280:intron | 50.0% | |
| !! | CCAAATTGGCTCGTCGACAA+GGG | - | chr2_4:40488194-40488213 | Msa0328280:intron | 50.0% |
| TCGCCAGTCAGCCACCAAAA+TGG | + | chr2_4:40485716-40485735 | None:intergenic | 55.0% | |
| ACTTCTACTTTCCGGCGTGG+TGG | + | chr2_4:40485750-40485769 | None:intergenic | 55.0% | |
| GTAGACAGCAGCCTGGCTAA+GGG | - | chr2_4:40487135-40487154 | Msa0328280:intron | 55.0% | |
| GCTGATCAGGTAGGAATCGG+CGG | - | chr2_4:40487577-40487596 | Msa0328280:intron | 55.0% | |
| GCGGTGCAAGGTGCAAAATG+GGG | - | chr2_4:40487695-40487714 | Msa0328280:intron | 55.0% | |
| CAGCTGCGCATGCATTATCG+CGG | - | chr2_4:40487719-40487738 | Msa0328280:intron | 55.0% | |
| CTGCAAGGAGAGACTTTCCC+TGG | - | chr2_4:40488000-40488019 | Msa0328280:intron | 55.0% | |
| GCAAGGAGAGACTTTCCCTG+GGG | - | chr2_4:40488002-40488021 | Msa0328280:intron | 55.0% | |
| !! | GCCAAATTGGCTCGTCGACA+AGG | - | chr2_4:40488193-40488212 | Msa0328280:intron | 55.0% |
| CCCTTGTCGACGAGCCAATT+TGG | + | chr2_4:40488197-40488216 | None:intergenic | 55.0% | |
| GGTAGACAGCAGCCTGGCTA+AGG | - | chr2_4:40487134-40487153 | Msa0328280:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 40485693 | 40488930 | 40485693 | ID=Msa0328280;Name=Msa0328280 |
| chr2_4 | mRNA | 40485693 | 40488930 | 40485693 | ID=Msa0328280-mRNA-1;Parent=Msa0328280;Name=Msa0328280-mRNA-1;_AED=0.11;_eAED=0.11;_QI=227|1|1|1|1|0.88|9|358|308 |
| chr2_4 | exon | 40485693 | 40486116 | 40485693 | ID=Msa0328280-mRNA-1:exon:12395;Parent=Msa0328280-mRNA-1 |
| chr2_4 | exon | 40486214 | 40486290 | 40486214 | ID=Msa0328280-mRNA-1:exon:12394;Parent=Msa0328280-mRNA-1 |
| chr2_4 | exon | 40486358 | 40486511 | 40486358 | ID=Msa0328280-mRNA-1:exon:12393;Parent=Msa0328280-mRNA-1 |
| chr2_4 | exon | 40486600 | 40486704 | 40486600 | ID=Msa0328280-mRNA-1:exon:12392;Parent=Msa0328280-mRNA-1 |
| chr2_4 | exon | 40486883 | 40486948 | 40486883 | ID=Msa0328280-mRNA-1:exon:12391;Parent=Msa0328280-mRNA-1 |
| chr2_4 | exon | 40487038 | 40487074 | 40487038 | ID=Msa0328280-mRNA-1:exon:12390;Parent=Msa0328280-mRNA-1 |
| chr2_4 | exon | 40487432 | 40487484 | 40487432 | ID=Msa0328280-mRNA-1:exon:12389;Parent=Msa0328280-mRNA-1 |
| chr2_4 | exon | 40488200 | 40488446 | 40488200 | ID=Msa0328280-mRNA-1:exon:12388;Parent=Msa0328280-mRNA-1 |
| chr2_4 | exon | 40488582 | 40488930 | 40488582 | ID=Msa0328280-mRNA-1:exon:12387;Parent=Msa0328280-mRNA-1 |
| chr2_4 | five_prime_UTR | 40488704 | 40488930 | 40488704 | ID=Msa0328280-mRNA-1:five_prime_utr;Parent=Msa0328280-mRNA-1 |
| chr2_4 | CDS | 40488582 | 40488703 | 40488582 | ID=Msa0328280-mRNA-1:cds;Parent=Msa0328280-mRNA-1 |
| chr2_4 | CDS | 40488200 | 40488446 | 40488200 | ID=Msa0328280-mRNA-1:cds;Parent=Msa0328280-mRNA-1 |
| chr2_4 | CDS | 40487432 | 40487484 | 40487432 | ID=Msa0328280-mRNA-1:cds;Parent=Msa0328280-mRNA-1 |
| chr2_4 | CDS | 40487038 | 40487074 | 40487038 | ID=Msa0328280-mRNA-1:cds;Parent=Msa0328280-mRNA-1 |
| chr2_4 | CDS | 40486883 | 40486948 | 40486883 | ID=Msa0328280-mRNA-1:cds;Parent=Msa0328280-mRNA-1 |
| chr2_4 | CDS | 40486600 | 40486704 | 40486600 | ID=Msa0328280-mRNA-1:cds;Parent=Msa0328280-mRNA-1 |
| chr2_4 | CDS | 40486358 | 40486511 | 40486358 | ID=Msa0328280-mRNA-1:cds;Parent=Msa0328280-mRNA-1 |
| chr2_4 | CDS | 40486214 | 40486290 | 40486214 | ID=Msa0328280-mRNA-1:cds;Parent=Msa0328280-mRNA-1 |
| chr2_4 | CDS | 40486051 | 40486116 | 40486051 | ID=Msa0328280-mRNA-1:cds;Parent=Msa0328280-mRNA-1 |
| chr2_4 | three_prime_UTR | 40485693 | 40486050 | 40485693 | ID=Msa0328280-mRNA-1:three_prime_utr;Parent=Msa0328280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
