Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331620 | XP_039684480.1 | 36.842 | 266 | 130 | 5 | 116 | 354 | 22 | 276 | 2.43e-32 | 134 |
| Msa0331620 | XP_039684480.1 | 38.326 | 227 | 92 | 5 | 1 | 202 | 1 | 204 | 2.73e-24 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0331620 | Msa0458420 | 0.805515 | 1.286460e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATCCACCCGTTATAAA+TGG | 0.275632 | 2_4:-47590204 | Msa0331620:CDS |
| CCCTTCTTCGCTATATATCT+TGG | 0.307677 | 2_4:+47589062 | None:intergenic |
| TCAAAATCCAAACGCGCAAT+AGG | 0.322452 | 2_4:+47588996 | None:intergenic |
| CTCATTCAAGTTTGTTAAAG+AGG | 0.322502 | 2_4:-47589325 | Msa0331620:CDS |
| CTCATTCAAGTTTGTTAAAG+AGG | 0.322502 | 2_4:-47590023 | Msa0331620:CDS |
| AGGACTCCCTATTGCGCGTT+TGG | 0.331643 | 2_4:-47589003 | Msa0331620:CDS |
| GATAATGGACTTCTTTGTTC+AGG | 0.344390 | 2_4:+47589275 | None:intergenic |
| CCATTTATAACGGGTGGATT+AGG | 0.348333 | 2_4:+47590204 | None:intergenic |
| GATAATCGACTTCTTTGTTC+AGG | 0.349806 | 2_4:+47589973 | None:intergenic |
| TCATTTATAACAGGTGGATT+AGG | 0.360234 | 2_4:+47589507 | None:intergenic |
| TTAGATACAACACATAATTA+TGG | 0.375959 | 2_4:-47590531 | Msa0331620:CDS |
| TAACAAACTTGAATGAGTTA+AGG | 0.387838 | 2_4:+47589331 | None:intergenic |
| TAACAAACTTGAATGAGTTA+AGG | 0.387838 | 2_4:+47590029 | None:intergenic |
| ATGTTCGAAACATTGGATAA+TGG | 0.394106 | 2_4:+47589260 | None:intergenic |
| TGCTGAAATACCTTTGTCAT+TGG | 0.402399 | 2_4:+47590874 | None:intergenic |
| ATTACATTTGCACATTCTTC+AGG | 0.409240 | 2_4:-47589239 | Msa0331620:intron |
| ATTACATTTGCACATTCTTC+AGG | 0.409240 | 2_4:-47589937 | Msa0331620:intron |
| CTTGTTTGAGAAGGAATGAA+TGG | 0.418262 | 2_4:+47590177 | None:intergenic |
| AAAGTTAGCATCATTAGAAA+GGG | 0.422388 | 2_4:-47590912 | Msa0331620:CDS |
| TAATTATGGTGTAAATTCAA+TGG | 0.426990 | 2_4:-47590517 | Msa0331620:CDS |
| CGACTTCTTTGTTCAGGTGG+TGG | 0.435866 | 2_4:+47589979 | None:intergenic |
| TCCAAGATATATAGCGAAGA+AGG | 0.440078 | 2_4:-47589063 | Msa0331620:CDS |
| CCTCTTTCACCATTGATGAA+TGG | 0.445314 | 2_4:-47590708 | Msa0331620:intron |
| GAAAGTTAGCATCATTAGAA+AGG | 0.446161 | 2_4:-47590913 | Msa0331620:CDS |
| CGGACTATGCATTGAGGTAT+CGG | 0.447300 | 2_4:-47590260 | Msa0331620:CDS |
| ATCTTCTAACCATTCATCAA+TGG | 0.457102 | 2_4:+47590699 | None:intergenic |
| CGGACTATGCATTGAGGTAT+CGG | 0.459241 | 2_4:-47589563 | Msa0331620:CDS |
| AATGGTGTGTCATTTATAAC+AGG | 0.464024 | 2_4:+47589498 | None:intergenic |
| GGACTTCTTTGTTCAGGTGG+TGG | 0.481060 | 2_4:+47589281 | None:intergenic |
| GAATGGAGTGCCATTTATAA+CGG | 0.482275 | 2_4:+47590194 | None:intergenic |
| CAAAATCCAAACGCGCAATA+GGG | 0.483228 | 2_4:+47588997 | None:intergenic |
| GCTGAAATACCTTTGTCATT+GGG | 0.488153 | 2_4:+47590875 | None:intergenic |
| CCATTCATCAATGGTGAAAG+AGG | 0.488885 | 2_4:+47590708 | None:intergenic |
| TTTCTGTTAGTGGTCAATCA+AGG | 0.498734 | 2_4:-47590558 | Msa0331620:intron |
| CTTGTTTGAGAAGGAATGAA+TGG | 0.502020 | 2_4:+47589480 | None:intergenic |
| AATGGACTTCTTTGTTCAGG+TGG | 0.505184 | 2_4:+47589278 | None:intergenic |
| AATGGAGTGCCATTTATAAC+GGG | 0.505326 | 2_4:+47590195 | None:intergenic |
| AAGTTTCAGATGGGGCACTA+AGG | 0.507545 | 2_4:-47590230 | Msa0331620:CDS |
| AAGTTTCAGATGGGGCACTA+AGG | 0.510075 | 2_4:-47589533 | Msa0331620:CDS |
| AGGGGTTCTAAGAGGTGCAT+TGG | 0.511370 | 2_4:+47590728 | None:intergenic |
| AGTTTCAGATGGGGCACTAA+GGG | 0.524706 | 2_4:-47589532 | Msa0331620:CDS |
| CATTCATCAATGGTGAAAGA+GGG | 0.530284 | 2_4:+47590709 | None:intergenic |
| AAATGTAATGTTCGAAACAT+TGG | 0.538621 | 2_4:+47589253 | None:intergenic |
| AAATGTAATGTTCGAAACAT+TGG | 0.538621 | 2_4:+47589951 | None:intergenic |
| TCATCGAACTCAGCAAAAGA+TGG | 0.539968 | 2_4:-47588948 | Msa0331620:intron |
| AATCGACTTCTTTGTTCAGG+TGG | 0.542323 | 2_4:+47589976 | None:intergenic |
| CGCAATTAGCAAGGACGAAG+AGG | 0.552123 | 2_4:-47590434 | Msa0331620:CDS |
| ATAGCATTTGTCTGTCACTC+AGG | 0.554713 | 2_4:+47590751 | None:intergenic |
| TTGCGAGTCACATTGTTCCA+TGG | 0.555403 | 2_4:+47590452 | None:intergenic |
| AGTTTCAGATGGGGCACTAA+GGG | 0.555648 | 2_4:-47590229 | Msa0331620:CDS |
| GGTGTGTCATTTATAACAGG+TGG | 0.564952 | 2_4:+47589501 | None:intergenic |
| AAACATTCATTGTTACAAAG+AGG | 0.565980 | 2_4:-47590411 | Msa0331620:CDS |
| GTCAAATGACTCGAATTCAA+AGG | 0.574757 | 2_4:-47589040 | Msa0331620:CDS |
| GGAGTGCCATTTATAACGGG+TGG | 0.584586 | 2_4:+47590198 | None:intergenic |
| TCTGAGACACAAACATCAAG+AGG | 0.586796 | 2_4:-47590480 | Msa0331620:CDS |
| GGTGAAAGAGGGGTTCTAAG+AGG | 0.590152 | 2_4:+47590720 | None:intergenic |
| GATGTTATACTTGTTTGAGA+AGG | 0.590329 | 2_4:+47589471 | None:intergenic |
| GATGTTATACTTGTTTGAGA+AGG | 0.590329 | 2_4:+47590168 | None:intergenic |
| AACATCAAGAGGGCTATCCA+TGG | 0.590940 | 2_4:-47590469 | Msa0331620:CDS |
| TTTATTAGAGAATGAAAAGG+CGG | 0.599656 | 2_4:-47589583 | Msa0331620:intron |
| TTTATTAGAGAATGAAAATG+CGG | 0.599656 | 2_4:-47590280 | Msa0331620:intron |
| TACAGCGATGCTGAGATCAA+AGG | 0.602525 | 2_4:-47588800 | None:intergenic |
| CCAAGATATATAGCGAAGAA+GGG | 0.610976 | 2_4:-47589062 | Msa0331620:CDS |
| AATGTGACTCGCAATTAGCA+AGG | 0.636552 | 2_4:-47590443 | Msa0331620:CDS |
| CAAAGGAAAAGACATTGCAA+AGG | 0.638638 | 2_4:-47589023 | Msa0331620:CDS |
| AAGTTAGCATCATTAGAAAG+GGG | 0.647048 | 2_4:-47590911 | Msa0331620:CDS |
| CTGAGACACAAACATCAAGA+GGG | 0.658631 | 2_4:-47590479 | Msa0331620:CDS |
| AAAATGCGGACTATGCATTG+AGG | 0.659415 | 2_4:-47590266 | Msa0331620:CDS |
| AAAAGGCGGACTATGCATTG+AGG | 0.667751 | 2_4:-47589569 | Msa0331620:CDS |
| ATTCATCAATGGTGAAAGAG+GGG | 0.668671 | 2_4:+47590710 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATGTTCACATATAT+TGG | + | chr2_4:47589623-47589642 | None:intergenic | 15.0% |
| !!! | TATTTTATTAGAGAATGAAA+AGG | - | chr2_4:47589469-47589488 | Msa0331620:intron | 15.0% |
| !! | AAAAATATGTTCACATATAT+TGG | + | chr2_4:47589623-47589642 | None:intergenic | 15.0% |
| !! | AAAAATATGTTCACATATAT+TGG | + | chr2_4:47589623-47589642 | None:intergenic | 15.0% |
| !!! | TATTTTATTAGAGAATGAAA+AGG | - | chr2_4:47589469-47589488 | Msa0331620:intron | 15.0% |
| !! | AAAAATATGTTCACATATAT+TGG | + | chr2_4:47589623-47589642 | None:intergenic | 15.0% |
| !! | TAAGATTTATCAATATGAAG+AGG | + | chr2_4:47588946-47588965 | None:intergenic | 20.0% |
| !! | TTAGATACAACACATAATTA+TGG | - | chr2_4:47589221-47589240 | Msa0331620:intron | 20.0% |
| !! | TAATTATGGTGTAAATTCAA+TGG | - | chr2_4:47589235-47589254 | Msa0331620:intron | 20.0% |
| !!! | ACCTTTATCAATAAGTTTTT+GGG | + | chr2_4:47589372-47589391 | None:intergenic | 20.0% |
| !!! | TACCTTTATCAATAAGTTTT+TGG | + | chr2_4:47589373-47589392 | None:intergenic | 20.0% |
| !!! | TATTGATAAAGGTATGATAT+AGG | - | chr2_4:47589379-47589398 | Msa0331620:intron | 20.0% |
| !! | TTTATTAGAGAATGAAAATG+CGG | - | chr2_4:47589472-47589491 | Msa0331620:intron | 20.0% |
| !! | AATTTAGATGACTTCAAAAA+TGG | - | chr2_4:47590925-47590944 | Msa0331620:CDS | 20.0% |
| !! | TAAGATTTATCAATATGAAG+AGG | + | chr2_4:47588946-47588965 | None:intergenic | 20.0% |
| !! | TTAGATACAACACATAATTA+TGG | - | chr2_4:47589221-47589240 | Msa0331620:intron | 20.0% |
| !! | TAATTATGGTGTAAATTCAA+TGG | - | chr2_4:47589235-47589254 | Msa0331620:intron | 20.0% |
| !!! | ACCTTTATCAATAAGTTTTT+GGG | + | chr2_4:47589372-47589391 | None:intergenic | 20.0% |
| !!! | TACCTTTATCAATAAGTTTT+TGG | + | chr2_4:47589373-47589392 | None:intergenic | 20.0% |
| !!! | TATTGATAAAGGTATGATAT+AGG | - | chr2_4:47589379-47589398 | Msa0331620:intron | 20.0% |
| !! | TTTATTAGAGAATGAAAATG+CGG | - | chr2_4:47589472-47589491 | Msa0331620:intron | 20.0% |
| !! | AATTTAGATGACTTCAAAAA+TGG | - | chr2_4:47590925-47590944 | Msa0331620:CDS | 20.0% |
| ! | AAAGTTAGCATCATTAGAAA+GGG | - | chr2_4:47588840-47588859 | Msa0331620:CDS | 25.0% |
| ! | AAACATTCATTGTTACAAAG+AGG | - | chr2_4:47589341-47589360 | Msa0331620:CDS | 25.0% |
| ! | ACCCAAAAACTTATTGATAA+AGG | - | chr2_4:47589368-47589387 | Msa0331620:intron | 25.0% |
| ! | AGGTATGATATAGGTTATAA+AGG | - | chr2_4:47589388-47589407 | Msa0331620:intron | 25.0% |
| ! | GGTATGATATAGGTTATAAA+GGG | - | chr2_4:47589389-47589408 | Msa0331620:intron | 25.0% |
| ! | ATCAAATTTACATGAGAGTA+CGG | + | chr2_4:47589443-47589462 | None:intergenic | 25.0% |
| ! | AATATGTTCACATATATTGG+AGG | + | chr2_4:47589620-47589639 | None:intergenic | 25.0% |
| ! | TAACAAACTTGAATGAGTTA+AGG | + | chr2_4:47589726-47589745 | None:intergenic | 25.0% |
| ! | AAATGTAATGTTCGAAACAT+TGG | + | chr2_4:47589804-47589823 | None:intergenic | 25.0% |
| !! | AGTTTTCTGTCATAACATTA+TGG | - | chr2_4:47589867-47589886 | Msa0331620:intron | 25.0% |
| !!! | TGTGAATCGTCTTTATTTTT+GGG | + | chr2_4:47590054-47590073 | None:intergenic | 25.0% |
| !!! | ATGTGAATCGTCTTTATTTT+TGG | + | chr2_4:47590055-47590074 | None:intergenic | 25.0% |
| ! | ATCAAATTTACATGAGAGTA+AGG | + | chr2_4:47589443-47589462 | None:intergenic | 25.0% |
| ! | TTTATTAGAGAATGAAAAGG+CGG | - | chr2_4:47590169-47590188 | Msa0331620:CDS | 25.0% |
| ! | GGAAAAAAAAAGTTTCAGAT+GGG | - | chr2_4:47590210-47590229 | Msa0331620:CDS | 25.0% |
| ! | GAAAAAAAAAGTTTCAGATG+GGG | - | chr2_4:47590211-47590230 | Msa0331620:CDS | 25.0% |
| ! | AATATGTTCACATATATTGG+AGG | + | chr2_4:47589620-47589639 | None:intergenic | 25.0% |
| ! | TAACAAACTTGAATGAGTTA+AGG | + | chr2_4:47589726-47589745 | None:intergenic | 25.0% |
| ! | AAATGTAATGTTCGAAACAT+TGG | + | chr2_4:47589804-47589823 | None:intergenic | 25.0% |
| !! | AGTTTTCTGTCATAACATTA+TGG | - | chr2_4:47589867-47589886 | Msa0331620:intron | 25.0% |
| ! | ATGATGTGAATACTTTATGA+TGG | - | chr2_4:47590649-47590668 | Msa0331620:intron | 25.0% |
| ! | TTATTCAATGTATTATCAGC+AGG | - | chr2_4:47590883-47590902 | Msa0331620:intron | 25.0% |
| ! | AAAGTTAGCATCATTAGAAA+GGG | - | chr2_4:47588840-47588859 | Msa0331620:CDS | 25.0% |
| ! | AAACATTCATTGTTACAAAG+AGG | - | chr2_4:47589341-47589360 | Msa0331620:CDS | 25.0% |
| ! | ACCCAAAAACTTATTGATAA+AGG | - | chr2_4:47589368-47589387 | Msa0331620:intron | 25.0% |
| ! | AGGTATGATATAGGTTATAA+AGG | - | chr2_4:47589388-47589407 | Msa0331620:intron | 25.0% |
| ! | GGTATGATATAGGTTATAAA+GGG | - | chr2_4:47589389-47589408 | Msa0331620:intron | 25.0% |
| ! | ATCAAATTTACATGAGAGTA+CGG | + | chr2_4:47589443-47589462 | None:intergenic | 25.0% |
| ! | AATATGTTCACATATATTGG+AGG | + | chr2_4:47589620-47589639 | None:intergenic | 25.0% |
| ! | TAACAAACTTGAATGAGTTA+AGG | + | chr2_4:47589726-47589745 | None:intergenic | 25.0% |
| ! | AAATGTAATGTTCGAAACAT+TGG | + | chr2_4:47589804-47589823 | None:intergenic | 25.0% |
| !! | AGTTTTCTGTCATAACATTA+TGG | - | chr2_4:47589867-47589886 | Msa0331620:intron | 25.0% |
| !!! | TGTGAATCGTCTTTATTTTT+GGG | + | chr2_4:47590054-47590073 | None:intergenic | 25.0% |
| !!! | ATGTGAATCGTCTTTATTTT+TGG | + | chr2_4:47590055-47590074 | None:intergenic | 25.0% |
| ! | ATCAAATTTACATGAGAGTA+AGG | + | chr2_4:47589443-47589462 | None:intergenic | 25.0% |
| ! | TTTATTAGAGAATGAAAAGG+CGG | - | chr2_4:47590169-47590188 | Msa0331620:CDS | 25.0% |
| ! | GGAAAAAAAAAGTTTCAGAT+GGG | - | chr2_4:47590210-47590229 | Msa0331620:CDS | 25.0% |
| ! | GAAAAAAAAAGTTTCAGATG+GGG | - | chr2_4:47590211-47590230 | Msa0331620:CDS | 25.0% |
| ! | AATATGTTCACATATATTGG+AGG | + | chr2_4:47589620-47589639 | None:intergenic | 25.0% |
| ! | TAACAAACTTGAATGAGTTA+AGG | + | chr2_4:47589726-47589745 | None:intergenic | 25.0% |
| ! | AAATGTAATGTTCGAAACAT+TGG | + | chr2_4:47589804-47589823 | None:intergenic | 25.0% |
| !! | AGTTTTCTGTCATAACATTA+TGG | - | chr2_4:47589867-47589886 | Msa0331620:intron | 25.0% |
| ! | ATGATGTGAATACTTTATGA+TGG | - | chr2_4:47590649-47590668 | Msa0331620:intron | 25.0% |
| ! | TTATTCAATGTATTATCAGC+AGG | - | chr2_4:47590883-47590902 | Msa0331620:intron | 25.0% |
| GAAAGTTAGCATCATTAGAA+AGG | - | chr2_4:47588839-47588858 | Msa0331620:CDS | 30.0% | |
| AAGTTAGCATCATTAGAAAG+GGG | - | chr2_4:47588841-47588860 | Msa0331620:CDS | 30.0% | |
| ATCTTATTGCAATTCATTGC+AGG | - | chr2_4:47588960-47588979 | Msa0331620:CDS | 30.0% | |
| ATCTTCTAACCATTCATCAA+TGG | + | chr2_4:47589056-47589075 | None:intergenic | 30.0% | |
| GAGCATAAAGAAATAAGCAA+AGG | + | chr2_4:47589173-47589192 | None:intergenic | 30.0% | |
| ! | TTTATGCTCTTTTCTGTTAG+TGG | - | chr2_4:47589184-47589203 | Msa0331620:intron | 30.0% |
| GGAAAAAACAAGTTTCAGAT+GGG | - | chr2_4:47589513-47589532 | Msa0331620:CDS | 30.0% | |
| GAAAAAACAAGTTTCAGATG+GGG | - | chr2_4:47589514-47589533 | Msa0331620:CDS | 30.0% | |
| GATGTTATACTTGTTTGAGA+AGG | + | chr2_4:47589587-47589606 | None:intergenic | 30.0% | |
| !! | CTCATTCAAGTTTGTTAAAG+AGG | - | chr2_4:47589729-47589748 | Msa0331620:intron | 30.0% |
| ATTACATTTGCACATTCTTC+AGG | - | chr2_4:47589815-47589834 | Msa0331620:intron | 30.0% | |
| ATGATGTGAATACTTGATGA+TGG | - | chr2_4:47589951-47589970 | Msa0331620:CDS | 30.0% | |
| CGGAAAAAAAAAGTTTCAGA+TGG | - | chr2_4:47590209-47590228 | Msa0331620:CDS | 30.0% | |
| ! | TCATTTATAACAGGTGGATT+AGG | + | chr2_4:47590248-47590267 | None:intergenic | 30.0% |
| !! | AATGGTGTGTCATTTATAAC+AGG | + | chr2_4:47590257-47590276 | None:intergenic | 30.0% |
| GATGTTATACTTGTTTGAGA+AGG | + | chr2_4:47589587-47589606 | None:intergenic | 30.0% | |
| !! | CTCATTCAAGTTTGTTAAAG+AGG | - | chr2_4:47589729-47589748 | Msa0331620:intron | 30.0% |
| ATGTTCGAAACATTGGATAA+TGG | + | chr2_4:47589797-47589816 | None:intergenic | 30.0% | |
| ATTACATTTGCACATTCTTC+AGG | - | chr2_4:47589815-47589834 | Msa0331620:intron | 30.0% | |
| !!! | TTTGAAGCTGTTTTTGTTGA+AGG | - | chr2_4:47590774-47590793 | Msa0331620:intron | 30.0% |
| GAAAGTTAGCATCATTAGAA+AGG | - | chr2_4:47588839-47588858 | Msa0331620:CDS | 30.0% | |
| AAGTTAGCATCATTAGAAAG+GGG | - | chr2_4:47588841-47588860 | Msa0331620:CDS | 30.0% | |
| ATCTTATTGCAATTCATTGC+AGG | - | chr2_4:47588960-47588979 | Msa0331620:CDS | 30.0% | |
| ATCTTCTAACCATTCATCAA+TGG | + | chr2_4:47589056-47589075 | None:intergenic | 30.0% | |
| GAGCATAAAGAAATAAGCAA+AGG | + | chr2_4:47589173-47589192 | None:intergenic | 30.0% | |
| ! | TTTATGCTCTTTTCTGTTAG+TGG | - | chr2_4:47589184-47589203 | Msa0331620:intron | 30.0% |
| GGAAAAAACAAGTTTCAGAT+GGG | - | chr2_4:47589513-47589532 | Msa0331620:CDS | 30.0% | |
| GAAAAAACAAGTTTCAGATG+GGG | - | chr2_4:47589514-47589533 | Msa0331620:CDS | 30.0% | |
| GATGTTATACTTGTTTGAGA+AGG | + | chr2_4:47589587-47589606 | None:intergenic | 30.0% | |
| !! | CTCATTCAAGTTTGTTAAAG+AGG | - | chr2_4:47589729-47589748 | Msa0331620:intron | 30.0% |
| ATTACATTTGCACATTCTTC+AGG | - | chr2_4:47589815-47589834 | Msa0331620:intron | 30.0% | |
| ATGATGTGAATACTTGATGA+TGG | - | chr2_4:47589951-47589970 | Msa0331620:CDS | 30.0% | |
| CGGAAAAAAAAAGTTTCAGA+TGG | - | chr2_4:47590209-47590228 | Msa0331620:CDS | 30.0% | |
| ! | TCATTTATAACAGGTGGATT+AGG | + | chr2_4:47590248-47590267 | None:intergenic | 30.0% |
| !! | AATGGTGTGTCATTTATAAC+AGG | + | chr2_4:47590257-47590276 | None:intergenic | 30.0% |
| GATGTTATACTTGTTTGAGA+AGG | + | chr2_4:47589587-47589606 | None:intergenic | 30.0% | |
| !! | CTCATTCAAGTTTGTTAAAG+AGG | - | chr2_4:47589729-47589748 | Msa0331620:intron | 30.0% |
| ATGTTCGAAACATTGGATAA+TGG | + | chr2_4:47589797-47589816 | None:intergenic | 30.0% | |
| ATTACATTTGCACATTCTTC+AGG | - | chr2_4:47589815-47589834 | Msa0331620:intron | 30.0% | |
| !!! | TTTGAAGCTGTTTTTGTTGA+AGG | - | chr2_4:47590774-47590793 | Msa0331620:intron | 30.0% |
| !! | TCTTCATCCTTGCACTTTTT+GGG | + | chr2_4:47588819-47588838 | None:intergenic | 35.0% |
| ACAAAAAGACCCAATGACAA+AGG | - | chr2_4:47588868-47588887 | Msa0331620:intron | 35.0% | |
| GCTGAAATACCTTTGTCATT+GGG | + | chr2_4:47588880-47588899 | None:intergenic | 35.0% | |
| TGCTGAAATACCTTTGTCAT+TGG | + | chr2_4:47588881-47588900 | None:intergenic | 35.0% | |
| ATTCATCAATGGTGAAAGAG+GGG | + | chr2_4:47589045-47589064 | None:intergenic | 35.0% | |
| CATTCATCAATGGTGAAAGA+GGG | + | chr2_4:47589046-47589065 | None:intergenic | 35.0% | |
| TGAAGTGTGGAATTGATGTT+GGG | + | chr2_4:47589114-47589133 | None:intergenic | 35.0% | |
| TTGAAGTGTGGAATTGATGT+TGG | + | chr2_4:47589115-47589134 | None:intergenic | 35.0% | |
| AGTAGCAAAATCTTGAAGTG+TGG | + | chr2_4:47589127-47589146 | None:intergenic | 35.0% | |
| TTTCTGTTAGTGGTCAATCA+AGG | - | chr2_4:47589194-47589213 | Msa0331620:intron | 35.0% | |
| CGGAAAAAACAAGTTTCAGA+TGG | - | chr2_4:47589512-47589531 | Msa0331620:CDS | 35.0% | |
| !! | AATGGAGTGCCATTTATAAC+GGG | + | chr2_4:47589560-47589579 | None:intergenic | 35.0% |
| !! | GAATGGAGTGCCATTTATAA+CGG | + | chr2_4:47589561-47589580 | None:intergenic | 35.0% |
| CTTGTTTGAGAAGGAATGAA+TGG | + | chr2_4:47589578-47589597 | None:intergenic | 35.0% | |
| ! | GATAATCGACTTCTTTGTTC+AGG | + | chr2_4:47589782-47589801 | None:intergenic | 35.0% |
| TCCAAGAAATATAGCGAAGA+AGG | - | chr2_4:47589991-47590010 | Msa0331620:CDS | 35.0% | |
| CCAAGAAATATAGCGAAGAA+GGG | - | chr2_4:47589992-47590011 | Msa0331620:CDS | 35.0% | |
| GTCAAAAGACTCGAATTCAA+AGG | - | chr2_4:47590014-47590033 | Msa0331620:CDS | 35.0% | |
| TTACATGAGAGTAAGGTAGT+TGG | + | chr2_4:47590133-47590152 | None:intergenic | 35.0% | |
| CTTGTTTGAGAAGGAATGAA+TGG | + | chr2_4:47589578-47589597 | None:intergenic | 35.0% | |
| !! | GATAATGGACTTCTTTGTTC+AGG | + | chr2_4:47590480-47590499 | None:intergenic | 35.0% |
| TCCAAGATATATAGCGAAGA+AGG | - | chr2_4:47590689-47590708 | Msa0331620:intron | 35.0% | |
| CCAAGATATATAGCGAAGAA+GGG | - | chr2_4:47590690-47590709 | Msa0331620:intron | 35.0% | |
| GTCAAATGACTCGAATTCAA+AGG | - | chr2_4:47590712-47590731 | Msa0331620:CDS | 35.0% | |
| CAAAGGAAAAGACATTGCAA+AGG | - | chr2_4:47590031-47590050 | Msa0331620:CDS | 35.0% | |
| TTCAATGTATTATCAGCAGG+TGG | - | chr2_4:47590886-47590905 | Msa0331620:CDS | 35.0% | |
| !! | TCTTCATCCTTGCACTTTTT+GGG | + | chr2_4:47588819-47588838 | None:intergenic | 35.0% |
| ACAAAAAGACCCAATGACAA+AGG | - | chr2_4:47588868-47588887 | Msa0331620:intron | 35.0% | |
| GCTGAAATACCTTTGTCATT+GGG | + | chr2_4:47588880-47588899 | None:intergenic | 35.0% | |
| TGCTGAAATACCTTTGTCAT+TGG | + | chr2_4:47588881-47588900 | None:intergenic | 35.0% | |
| ATTCATCAATGGTGAAAGAG+GGG | + | chr2_4:47589045-47589064 | None:intergenic | 35.0% | |
| CATTCATCAATGGTGAAAGA+GGG | + | chr2_4:47589046-47589065 | None:intergenic | 35.0% | |
| TGAAGTGTGGAATTGATGTT+GGG | + | chr2_4:47589114-47589133 | None:intergenic | 35.0% | |
| TTGAAGTGTGGAATTGATGT+TGG | + | chr2_4:47589115-47589134 | None:intergenic | 35.0% | |
| AGTAGCAAAATCTTGAAGTG+TGG | + | chr2_4:47589127-47589146 | None:intergenic | 35.0% | |
| TTTCTGTTAGTGGTCAATCA+AGG | - | chr2_4:47589194-47589213 | Msa0331620:intron | 35.0% | |
| CGGAAAAAACAAGTTTCAGA+TGG | - | chr2_4:47589512-47589531 | Msa0331620:CDS | 35.0% | |
| !! | AATGGAGTGCCATTTATAAC+GGG | + | chr2_4:47589560-47589579 | None:intergenic | 35.0% |
| !! | GAATGGAGTGCCATTTATAA+CGG | + | chr2_4:47589561-47589580 | None:intergenic | 35.0% |
| CTTGTTTGAGAAGGAATGAA+TGG | + | chr2_4:47589578-47589597 | None:intergenic | 35.0% | |
| ! | GATAATCGACTTCTTTGTTC+AGG | + | chr2_4:47589782-47589801 | None:intergenic | 35.0% |
| TCCAAGAAATATAGCGAAGA+AGG | - | chr2_4:47589991-47590010 | Msa0331620:CDS | 35.0% | |
| CCAAGAAATATAGCGAAGAA+GGG | - | chr2_4:47589992-47590011 | Msa0331620:CDS | 35.0% | |
| GTCAAAAGACTCGAATTCAA+AGG | - | chr2_4:47590014-47590033 | Msa0331620:CDS | 35.0% | |
| TTACATGAGAGTAAGGTAGT+TGG | + | chr2_4:47590133-47590152 | None:intergenic | 35.0% | |
| CTTGTTTGAGAAGGAATGAA+TGG | + | chr2_4:47589578-47589597 | None:intergenic | 35.0% | |
| !! | GATAATGGACTTCTTTGTTC+AGG | + | chr2_4:47590480-47590499 | None:intergenic | 35.0% |
| TCCAAGATATATAGCGAAGA+AGG | - | chr2_4:47590689-47590708 | Msa0331620:intron | 35.0% | |
| CCAAGATATATAGCGAAGAA+GGG | - | chr2_4:47590690-47590709 | Msa0331620:intron | 35.0% | |
| GTCAAATGACTCGAATTCAA+AGG | - | chr2_4:47590712-47590731 | Msa0331620:CDS | 35.0% | |
| CAAAGGAAAAGACATTGCAA+AGG | - | chr2_4:47590031-47590050 | Msa0331620:CDS | 35.0% | |
| TTCAATGTATTATCAGCAGG+TGG | - | chr2_4:47590886-47590905 | Msa0331620:CDS | 35.0% | |
| !!! | CTTGCACTTTTTGGGTCATT+GGG | + | chr2_4:47588811-47588830 | None:intergenic | 40.0% |
| ! | CTCTTCATCCTTGCACTTTT+TGG | + | chr2_4:47588820-47588839 | None:intergenic | 40.0% |
| ATAGCATTTGTCTGTCACTC+AGG | + | chr2_4:47589004-47589023 | None:intergenic | 40.0% | |
| CCATTCATCAATGGTGAAAG+AGG | + | chr2_4:47589047-47589066 | None:intergenic | 40.0% | |
| CCTCTTTCACCATTGATGAA+TGG | - | chr2_4:47589044-47589063 | Msa0331620:CDS | 40.0% | |
| ! | TCTGAGACACAAACATCAAG+AGG | - | chr2_4:47589272-47589291 | Msa0331620:CDS | 40.0% |
| CTGAGACACAAACATCAAGA+GGG | - | chr2_4:47589273-47589292 | Msa0331620:CDS | 40.0% | |
| AATGTGACTCGCAATTAGCA+AGG | - | chr2_4:47589309-47589328 | Msa0331620:CDS | 40.0% | |
| ! | TTACATGAGAGTACGGTAGT+TGG | + | chr2_4:47589436-47589455 | None:intergenic | 40.0% |
| ! | AAAATGCGGACTATGCATTG+AGG | - | chr2_4:47589486-47589505 | Msa0331620:CDS | 40.0% |
| !! | CCATTTATAACGGGTGGATT+AGG | + | chr2_4:47589551-47589570 | None:intergenic | 40.0% |
| CCTAATCCACCCGTTATAAA+TGG | - | chr2_4:47589548-47589567 | Msa0331620:CDS | 40.0% | |
| ! | AATCGACTTCTTTGTTCAGG+TGG | + | chr2_4:47589779-47589798 | None:intergenic | 40.0% |
| CCCTTCTTCGCTATATTTCT+TGG | + | chr2_4:47589995-47590014 | None:intergenic | 40.0% | |
| !! | GGTGTGTCATTTATAACAGG+TGG | + | chr2_4:47590254-47590273 | None:intergenic | 40.0% |
| ! | AATGGACTTCTTTGTTCAGG+TGG | + | chr2_4:47590477-47590496 | None:intergenic | 40.0% |
| CCCTTCTTCGCTATATATCT+TGG | + | chr2_4:47590693-47590712 | None:intergenic | 40.0% | |
| CAAAATCCAAACGCGCAATA+GGG | + | chr2_4:47590758-47590777 | None:intergenic | 40.0% | |
| TCAAAATCCAAACGCGCAAT+AGG | + | chr2_4:47590759-47590778 | None:intergenic | 40.0% | |
| !!! | GAAGCTGTTTTTGTTGAAGG+CGG | - | chr2_4:47590777-47590796 | Msa0331620:intron | 40.0% |
| TCATCGAACTCAGCAAAAGA+TGG | - | chr2_4:47590804-47590823 | Msa0331620:intron | 40.0% | |
| !!! | CTTGCACTTTTTGGGTCATT+GGG | + | chr2_4:47588811-47588830 | None:intergenic | 40.0% |
| ! | CTCTTCATCCTTGCACTTTT+TGG | + | chr2_4:47588820-47588839 | None:intergenic | 40.0% |
| ATAGCATTTGTCTGTCACTC+AGG | + | chr2_4:47589004-47589023 | None:intergenic | 40.0% | |
| CCATTCATCAATGGTGAAAG+AGG | + | chr2_4:47589047-47589066 | None:intergenic | 40.0% | |
| CCTCTTTCACCATTGATGAA+TGG | - | chr2_4:47589044-47589063 | Msa0331620:CDS | 40.0% | |
| ! | TCTGAGACACAAACATCAAG+AGG | - | chr2_4:47589272-47589291 | Msa0331620:CDS | 40.0% |
| CTGAGACACAAACATCAAGA+GGG | - | chr2_4:47589273-47589292 | Msa0331620:CDS | 40.0% | |
| AATGTGACTCGCAATTAGCA+AGG | - | chr2_4:47589309-47589328 | Msa0331620:CDS | 40.0% | |
| ! | TTACATGAGAGTACGGTAGT+TGG | + | chr2_4:47589436-47589455 | None:intergenic | 40.0% |
| ! | AAAATGCGGACTATGCATTG+AGG | - | chr2_4:47589486-47589505 | Msa0331620:CDS | 40.0% |
| !! | CCATTTATAACGGGTGGATT+AGG | + | chr2_4:47589551-47589570 | None:intergenic | 40.0% |
| CCTAATCCACCCGTTATAAA+TGG | - | chr2_4:47589548-47589567 | Msa0331620:CDS | 40.0% | |
| ! | AATCGACTTCTTTGTTCAGG+TGG | + | chr2_4:47589779-47589798 | None:intergenic | 40.0% |
| CCCTTCTTCGCTATATTTCT+TGG | + | chr2_4:47589995-47590014 | None:intergenic | 40.0% | |
| !! | GGTGTGTCATTTATAACAGG+TGG | + | chr2_4:47590254-47590273 | None:intergenic | 40.0% |
| ! | AATGGACTTCTTTGTTCAGG+TGG | + | chr2_4:47590477-47590496 | None:intergenic | 40.0% |
| CCCTTCTTCGCTATATATCT+TGG | + | chr2_4:47590693-47590712 | None:intergenic | 40.0% | |
| CAAAATCCAAACGCGCAATA+GGG | + | chr2_4:47590758-47590777 | None:intergenic | 40.0% | |
| TCAAAATCCAAACGCGCAAT+AGG | + | chr2_4:47590759-47590778 | None:intergenic | 40.0% | |
| !!! | GAAGCTGTTTTTGTTGAAGG+CGG | - | chr2_4:47590777-47590796 | Msa0331620:intron | 40.0% |
| TCATCGAACTCAGCAAAAGA+TGG | - | chr2_4:47590804-47590823 | Msa0331620:intron | 40.0% | |
| !!! | CCTTGCACTTTTTGGGTCAT+TGG | + | chr2_4:47588812-47588831 | None:intergenic | 45.0% |
| ! | CCAATGACCCAAAAAGTGCA+AGG | - | chr2_4:47588809-47588828 | Msa0331620:CDS | 45.0% |
| AACATCAAGAGGGCTATCCA+TGG | - | chr2_4:47589283-47589302 | Msa0331620:CDS | 45.0% | |
| TTGCGAGTCACATTGTTCCA+TGG | + | chr2_4:47589303-47589322 | None:intergenic | 45.0% | |
| CGGACTATGCATTGAGGTAT+CGG | - | chr2_4:47589492-47589511 | Msa0331620:CDS | 45.0% | |
| ! | AAGTTTCAGATGGGGCACTA+AGG | - | chr2_4:47589522-47589541 | Msa0331620:CDS | 45.0% |
| ! | AGTTTCAGATGGGGCACTAA+GGG | - | chr2_4:47589523-47589542 | Msa0331620:CDS | 45.0% |
| !! | AAAAGGCGGACTATGCATTG+AGG | - | chr2_4:47590183-47590202 | Msa0331620:CDS | 45.0% |
| CGGACTATGCATTGAGGTAT+CGG | - | chr2_4:47589492-47589511 | Msa0331620:CDS | 45.0% | |
| ! | AAGTTTCAGATGGGGCACTA+AGG | - | chr2_4:47589522-47589541 | Msa0331620:CDS | 45.0% |
| ! | AGTTTCAGATGGGGCACTAA+GGG | - | chr2_4:47589523-47589542 | Msa0331620:CDS | 45.0% |
| !!! | CCTTGCACTTTTTGGGTCAT+TGG | + | chr2_4:47588812-47588831 | None:intergenic | 45.0% |
| ! | CCAATGACCCAAAAAGTGCA+AGG | - | chr2_4:47588809-47588828 | Msa0331620:CDS | 45.0% |
| AACATCAAGAGGGCTATCCA+TGG | - | chr2_4:47589283-47589302 | Msa0331620:CDS | 45.0% | |
| TTGCGAGTCACATTGTTCCA+TGG | + | chr2_4:47589303-47589322 | None:intergenic | 45.0% | |
| CGGACTATGCATTGAGGTAT+CGG | - | chr2_4:47589492-47589511 | Msa0331620:CDS | 45.0% | |
| ! | AAGTTTCAGATGGGGCACTA+AGG | - | chr2_4:47589522-47589541 | Msa0331620:CDS | 45.0% |
| ! | AGTTTCAGATGGGGCACTAA+GGG | - | chr2_4:47589523-47589542 | Msa0331620:CDS | 45.0% |
| !! | AAAAGGCGGACTATGCATTG+AGG | - | chr2_4:47590183-47590202 | Msa0331620:CDS | 45.0% |
| CGGACTATGCATTGAGGTAT+CGG | - | chr2_4:47589492-47589511 | Msa0331620:CDS | 45.0% | |
| ! | AAGTTTCAGATGGGGCACTA+AGG | - | chr2_4:47589522-47589541 | Msa0331620:CDS | 45.0% |
| ! | AGTTTCAGATGGGGCACTAA+GGG | - | chr2_4:47589523-47589542 | Msa0331620:CDS | 45.0% |
| !! | AGGGGTTCTAAGAGGTGCAT+TGG | + | chr2_4:47589027-47589046 | None:intergenic | 50.0% |
| !! | GGTGAAAGAGGGGTTCTAAG+AGG | + | chr2_4:47589035-47589054 | None:intergenic | 50.0% |
| CGCAATTAGCAAGGACGAAG+AGG | - | chr2_4:47589318-47589337 | Msa0331620:CDS | 50.0% | |
| !! | GGAGTGCCATTTATAACGGG+TGG | + | chr2_4:47589557-47589576 | None:intergenic | 50.0% |
| CGACTTCTTTGTTCAGGTGG+TGG | + | chr2_4:47589776-47589795 | None:intergenic | 50.0% | |
| GGACTTCTTTGTTCAGGTGG+TGG | + | chr2_4:47590474-47590493 | None:intergenic | 50.0% | |
| !! | AGGGGTTCTAAGAGGTGCAT+TGG | + | chr2_4:47589027-47589046 | None:intergenic | 50.0% |
| !! | GGTGAAAGAGGGGTTCTAAG+AGG | + | chr2_4:47589035-47589054 | None:intergenic | 50.0% |
| CGCAATTAGCAAGGACGAAG+AGG | - | chr2_4:47589318-47589337 | Msa0331620:CDS | 50.0% | |
| !! | GGAGTGCCATTTATAACGGG+TGG | + | chr2_4:47589557-47589576 | None:intergenic | 50.0% |
| CGACTTCTTTGTTCAGGTGG+TGG | + | chr2_4:47589776-47589795 | None:intergenic | 50.0% | |
| GGACTTCTTTGTTCAGGTGG+TGG | + | chr2_4:47590474-47590493 | None:intergenic | 50.0% | |
| AGGACTCCCTATTGCGCGTT+TGG | - | chr2_4:47590749-47590768 | Msa0331620:CDS | 55.0% | |
| AGGACTCCCTATTGCGCGTT+TGG | - | chr2_4:47590749-47590768 | Msa0331620:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 47588802 | 47590972 | 47588802 | ID=Msa0331620;Name=Msa0331620 |
| chr2_4 | mRNA | 47588802 | 47590972 | 47588802 | ID=Msa0331620-mRNA-1;Parent=Msa0331620;Name=Msa0331620-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0.25|0.11|0.33|0.87|0.77|9|0|354 |
| chr2_4 | exon | 47590885 | 47590972 | 47590885 | ID=Msa0331620-mRNA-1:exon:14356;Parent=Msa0331620-mRNA-1 |
| chr2_4 | exon | 47590709 | 47590792 | 47590709 | ID=Msa0331620-mRNA-1:exon:14355;Parent=Msa0331620-mRNA-1 |
| chr2_4 | exon | 47590385 | 47590570 | 47590385 | ID=Msa0331620-mRNA-1:exon:14354;Parent=Msa0331620-mRNA-1 |
| chr2_4 | exon | 47590166 | 47590294 | 47590166 | ID=Msa0331620-mRNA-1:exon:14353;Parent=Msa0331620-mRNA-1 |
| chr2_4 | exon | 47589938 | 47590060 | 47589938 | ID=Msa0331620-mRNA-1:exon:14352;Parent=Msa0331620-mRNA-1 |
| chr2_4 | exon | 47589481 | 47589597 | 47589481 | ID=Msa0331620-mRNA-1:exon:14351;Parent=Msa0331620-mRNA-1 |
| chr2_4 | exon | 47589240 | 47589362 | 47589240 | ID=Msa0331620-mRNA-1:exon:14350;Parent=Msa0331620-mRNA-1 |
| chr2_4 | exon | 47588949 | 47589092 | 47588949 | ID=Msa0331620-mRNA-1:exon:14349;Parent=Msa0331620-mRNA-1 |
| chr2_4 | exon | 47588802 | 47588869 | 47588802 | ID=Msa0331620-mRNA-1:exon:14348;Parent=Msa0331620-mRNA-1 |
| chr2_4 | CDS | 47590885 | 47590972 | 47590885 | ID=Msa0331620-mRNA-1:cds;Parent=Msa0331620-mRNA-1 |
| chr2_4 | CDS | 47590709 | 47590792 | 47590709 | ID=Msa0331620-mRNA-1:cds;Parent=Msa0331620-mRNA-1 |
| chr2_4 | CDS | 47590385 | 47590570 | 47590385 | ID=Msa0331620-mRNA-1:cds;Parent=Msa0331620-mRNA-1 |
| chr2_4 | CDS | 47590166 | 47590294 | 47590166 | ID=Msa0331620-mRNA-1:cds;Parent=Msa0331620-mRNA-1 |
| chr2_4 | CDS | 47589938 | 47590060 | 47589938 | ID=Msa0331620-mRNA-1:cds;Parent=Msa0331620-mRNA-1 |
| chr2_4 | CDS | 47589481 | 47589597 | 47589481 | ID=Msa0331620-mRNA-1:cds;Parent=Msa0331620-mRNA-1 |
| chr2_4 | CDS | 47589240 | 47589362 | 47589240 | ID=Msa0331620-mRNA-1:cds;Parent=Msa0331620-mRNA-1 |
| chr2_4 | CDS | 47588949 | 47589092 | 47588949 | ID=Msa0331620-mRNA-1:cds;Parent=Msa0331620-mRNA-1 |
| chr2_4 | CDS | 47588802 | 47588869 | 47588802 | ID=Msa0331620-mRNA-1:cds;Parent=Msa0331620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
