Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458420 | KEH34366.1 | 76.623 | 231 | 32 | 5 | 1 | 221 | 1 | 219 | 1.04e-119 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458420 | A0A072UY95 | 76.623 | 231 | 32 | 5 | 1 | 221 | 1 | 219 | 4.97e-120 | 349 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023610 | Msa0458420 | 0.806273 | 8.912722e-50 | -8.615850e-47 |
| Msa0068630 | Msa0458420 | 0.837367 | 5.420131e-57 | -8.615850e-47 |
| Msa0145750 | Msa0458420 | 0.821536 | 3.832708e-53 | -8.615850e-47 |
| Msa0153200 | Msa0458420 | 0.807941 | 3.953047e-50 | -8.615850e-47 |
| Msa0162580 | Msa0458420 | 0.847835 | 8.993379e-60 | -8.615850e-47 |
| Msa0458420 | Msa0548060 | 0.806672 | 7.341605e-50 | -8.615850e-47 |
| Msa0458420 | Msa0675510 | 0.824096 | 9.713456e-54 | -8.615850e-47 |
| Msa0458420 | Msa0745060 | 0.815674 | 8.191549e-52 | -8.615850e-47 |
| Msa0458420 | Msa0825860 | 0.818450 | 1.948137e-52 | -8.615850e-47 |
| Msa0458420 | Msa1048540 | 0.832256 | 1.048830e-55 | -8.615850e-47 |
| Msa0458420 | Msa1178340 | 0.811066 | 8.432219e-51 | -8.615850e-47 |
| Msa0458420 | Msa1270270 | 0.820185 | 7.839374e-53 | -8.615850e-47 |
| Msa0458420 | Msa1415310 | 0.811341 | 7.349039e-51 | -8.615850e-47 |
| Msa0458420 | Msa1463140 | 0.807902 | 4.029197e-50 | -8.615850e-47 |
| Msa0331620 | Msa0458420 | 0.805515 | 1.286460e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458420 | MtrunA17_Chr3g0105771 | 35.922 | 103 | 60 | 3 | 25 | 126 | 51 | 148 | 6.79e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAACTTCGGAGCTAATT+TGG | 0.163905 | 3_3:+54103052 | Msa0458420:CDS |
| TCCAACAAGTGGTTCAGTTT+GGG | 0.242104 | 3_3:+54103007 | Msa0458420:CDS |
| TAAGACCGTCTGATTCTCTT+AGG | 0.286419 | 3_3:-54103077 | None:intergenic |
| GAACTAGCACAGCTGATTAA+TGG | 0.293544 | 3_3:+54104071 | Msa0458420:CDS |
| CTCCAACAAGTGGTTCAGTT+TGG | 0.303102 | 3_3:+54103006 | Msa0458420:CDS |
| CCAACATCAAAGAGTGCTTT+TGG | 0.327530 | 3_3:-54103780 | None:intergenic |
| GCAAACTTCGGAGCTAATTT+GGG | 0.327740 | 3_3:+54103053 | Msa0458420:CDS |
| CATAGAAATAGATTGTCAAT+AGG | 0.337816 | 3_3:-54104384 | None:intergenic |
| TGAGTCCGAGTCTCTATTAA+AGG | 0.338295 | 3_3:-54103525 | None:intergenic |
| TTGTTCTTACCTTGATCATA+TGG | 0.344596 | 3_3:-54104152 | None:intergenic |
| GCATAGGTGGTGTCCACATT+TGG | 0.361914 | 3_3:-54104299 | None:intergenic |
| ATAGAAATAGATTGTCAATA+GGG | 0.372079 | 3_3:-54104383 | None:intergenic |
| CAACAGCATGGAATTGTTCA+TGG | 0.372107 | 3_3:+54104344 | Msa0458420:CDS |
| GTTTGCAGCAGAATGGTTAA+AGG | 0.374544 | 3_3:-54103036 | None:intergenic |
| AACTAGCACAGCTGATTAAT+GGG | 0.393662 | 3_3:+54104072 | Msa0458420:CDS |
| ATAATTTGAGTCTAGATCAT+TGG | 0.395887 | 3_3:-54104120 | None:intergenic |
| CCACTTGTTGGAGGACATAA+AGG | 0.404832 | 3_3:-54102996 | None:intergenic |
| GGAGAACATCATGGGTGATA+TGG | 0.413946 | 3_3:+54102935 | None:intergenic |
| GTCCACATTTGGCTTTGTAA+TGG | 0.435361 | 3_3:-54104288 | None:intergenic |
| CCCCAAACTGAACCACTTGT+TGG | 0.455041 | 3_3:-54103008 | None:intergenic |
| ATACTGATCTTGCTTCCGTC+TGG | 0.458312 | 3_3:-54103558 | None:intergenic |
| CATGAACAATTCCATGCTGT+TGG | 0.471592 | 3_3:-54104343 | None:intergenic |
| GTTTCAAATCCATATGATCA+AGG | 0.476271 | 3_3:+54104143 | Msa0458420:CDS |
| ATGAACAATTCCATGCTGTT+GGG | 0.480845 | 3_3:-54104342 | None:intergenic |
| CCAAAAGCACTCTTTGATGT+TGG | 0.483067 | 3_3:+54103780 | Msa0458420:CDS |
| GCATGGAATTGTTCATGGAT+TGG | 0.489116 | 3_3:+54104349 | Msa0458420:CDS |
| CTCCGAAGTTTGCAGCAGAA+TGG | 0.490049 | 3_3:-54103043 | None:intergenic |
| AACCATTCTGCTGCAAACTT+CGG | 0.496705 | 3_3:+54103041 | Msa0458420:CDS |
| AATGTGGACACCACCTATGC+GGG | 0.508619 | 3_3:+54104302 | Msa0458420:CDS |
| CCAACAAGTGGTTCAGTTTG+GGG | 0.510706 | 3_3:+54103008 | Msa0458420:CDS |
| GTTTCGTGCTCATCCCGCAT+AGG | 0.526382 | 3_3:-54104315 | None:intergenic |
| GTTGGAGCGTGAGAAATTGA+TGG | 0.529938 | 3_3:+54103798 | Msa0458420:CDS |
| GGAATTGTTCATGGATTGGA+TGG | 0.532597 | 3_3:+54104353 | Msa0458420:CDS |
| AAGACCGTCTGATTCTCTTA+GGG | 0.533208 | 3_3:-54103076 | None:intergenic |
| AAAGAAGTACTTCACAAAGA+AGG | 0.541781 | 3_3:+54103841 | Msa0458420:CDS |
| TGAGAAATTGATGGATAAAG+TGG | 0.554684 | 3_3:+54103807 | Msa0458420:CDS |
| AACATCATGGGTGATATGGA+TGG | 0.571328 | 3_3:+54102939 | None:intergenic |
| CAAACTGAACCACTTGTTGG+AGG | 0.579508 | 3_3:-54103005 | None:intergenic |
| CCTTTATGTCCTCCAACAAG+TGG | 0.591605 | 3_3:+54102996 | Msa0458420:CDS |
| TCGTGCTCATCCCGCATAGG+TGG | 0.592149 | 3_3:-54104312 | None:intergenic |
| GAGTCTAGATCATTGGACAT+TGG | 0.596273 | 3_3:-54104113 | None:intergenic |
| GACCATTACAAAGCCAAATG+TGG | 0.607277 | 3_3:+54104286 | Msa0458420:CDS |
| CGAAACAGAACCCAACAGCA+TGG | 0.608229 | 3_3:+54104332 | Msa0458420:CDS |
| CTATGTCAATCAACAAGCTG+AGG | 0.614846 | 3_3:+54104049 | Msa0458420:CDS |
| TTAATTATCAGTTGAAACTG+AGG | 0.627839 | 3_3:+54103992 | Msa0458420:intron |
| CTTGTTGGAGGACATAAAGG+TGG | 0.642439 | 3_3:-54102993 | None:intergenic |
| AGACACCTTTAATAGAGACT+CGG | 0.649080 | 3_3:+54103520 | Msa0458420:CDS |
| AAATGTGGACACCACCTATG+CGG | 0.684533 | 3_3:+54104301 | Msa0458420:CDS |
| ACTCAACTCATAGATCCAGA+CGG | 0.702368 | 3_3:+54103543 | Msa0458420:CDS |
| TGGGCCCTAAGAGAATCAGA+CGG | 0.735911 | 3_3:+54103072 | Msa0458420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTATTATTTATTTTTTA+AGG | + | chr3_3:54103187-54103206 | Msa0458420:intron | 0.0% |
| !!! | ATATTATTATTTATTTTTTA+AGG | + | chr3_3:54103187-54103206 | Msa0458420:intron | 0.0% |
| !!! | TTTTTAAATTTAAATATGCC+TGG | + | chr3_3:54103404-54103423 | Msa0458420:intron | 15.0% |
| !!! | TAACATTTTTGTTTTTGAAA+AGG | - | chr3_3:54104222-54104241 | None:intergenic | 15.0% |
| !!! | TTTTTAAATTTAAATATGCC+TGG | + | chr3_3:54103404-54103423 | Msa0458420:intron | 15.0% |
| !!! | TAACATTTTTGTTTTTGAAA+AGG | - | chr3_3:54104222-54104241 | None:intergenic | 15.0% |
| !! | TAAGAATCAAAACAAATTAC+AGG | - | chr3_3:54103103-54103122 | None:intergenic | 20.0% |
| !! | ATCATATAATCTAAATATCC+AGG | - | chr3_3:54103425-54103444 | None:intergenic | 20.0% |
| !!! | CTTAACTTTTTTACTCAAAT+AGG | - | chr3_3:54103588-54103607 | None:intergenic | 20.0% |
| !! | CTATTTGAGTAAAAAAGTTA+AGG | + | chr3_3:54103586-54103605 | Msa0458420:CDS | 20.0% |
| !! | TAAAAAAGTTAAGGAAATTG+AGG | + | chr3_3:54103595-54103614 | Msa0458420:CDS | 20.0% |
| !! | AGTTTCAACTGATAATTAAT+GGG | - | chr3_3:54103991-54104010 | None:intergenic | 20.0% |
| !! | ATAGAAATAGATTGTCAATA+GGG | - | chr3_3:54104386-54104405 | None:intergenic | 20.0% |
| !! | TAAGAATCAAAACAAATTAC+AGG | - | chr3_3:54103103-54103122 | None:intergenic | 20.0% |
| !! | ATCATATAATCTAAATATCC+AGG | - | chr3_3:54103425-54103444 | None:intergenic | 20.0% |
| !!! | CTTAACTTTTTTACTCAAAT+AGG | - | chr3_3:54103588-54103607 | None:intergenic | 20.0% |
| !! | CTATTTGAGTAAAAAAGTTA+AGG | + | chr3_3:54103586-54103605 | Msa0458420:CDS | 20.0% |
| !! | TAAAAAAGTTAAGGAAATTG+AGG | + | chr3_3:54103595-54103614 | Msa0458420:CDS | 20.0% |
| !! | AGTTTCAACTGATAATTAAT+GGG | - | chr3_3:54103991-54104010 | None:intergenic | 20.0% |
| !! | ATAGAAATAGATTGTCAATA+GGG | - | chr3_3:54104386-54104405 | None:intergenic | 20.0% |
| ! | TTAAAATGTCAAATATCGCA+AGG | - | chr3_3:54103153-54103172 | None:intergenic | 25.0% |
| ! | GATTTAGATTCAATAGATAC+CGG | + | chr3_3:54103442-54103461 | Msa0458420:intron | 25.0% |
| !! | CATAGCTCAATATATTGATT+AGG | + | chr3_3:54103925-54103944 | Msa0458420:intron | 25.0% |
| ! | CAGTTTCAACTGATAATTAA+TGG | - | chr3_3:54103992-54104011 | None:intergenic | 25.0% |
| ! | TTAATTATCAGTTGAAACTG+AGG | + | chr3_3:54103992-54104011 | Msa0458420:intron | 25.0% |
| ! | AAATCCAAGTGAAAAAATTG+AGG | + | chr3_3:54104021-54104040 | Msa0458420:CDS | 25.0% |
| ! | AATCCAAGTGAAAAAATTGA+GGG | + | chr3_3:54104022-54104041 | Msa0458420:CDS | 25.0% |
| ! | ATAATTTGAGTCTAGATCAT+TGG | - | chr3_3:54104123-54104142 | None:intergenic | 25.0% |
| ! | CATAGAAATAGATTGTCAAT+AGG | - | chr3_3:54104387-54104406 | None:intergenic | 25.0% |
| ! | TTAAAATGTCAAATATCGCA+AGG | - | chr3_3:54103153-54103172 | None:intergenic | 25.0% |
| ! | GATTTAGATTCAATAGATAC+CGG | + | chr3_3:54103442-54103461 | Msa0458420:intron | 25.0% |
| !! | CATAGCTCAATATATTGATT+AGG | + | chr3_3:54103925-54103944 | Msa0458420:intron | 25.0% |
| ! | CAGTTTCAACTGATAATTAA+TGG | - | chr3_3:54103992-54104011 | None:intergenic | 25.0% |
| ! | TTAATTATCAGTTGAAACTG+AGG | + | chr3_3:54103992-54104011 | Msa0458420:intron | 25.0% |
| ! | AAATCCAAGTGAAAAAATTG+AGG | + | chr3_3:54104021-54104040 | Msa0458420:CDS | 25.0% |
| ! | AATCCAAGTGAAAAAATTGA+GGG | + | chr3_3:54104022-54104041 | Msa0458420:CDS | 25.0% |
| ! | ATAATTTGAGTCTAGATCAT+TGG | - | chr3_3:54104123-54104142 | None:intergenic | 25.0% |
| ! | CATAGAAATAGATTGTCAAT+AGG | - | chr3_3:54104387-54104406 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTGAAAAGAGACA+TGG | - | chr3_3:54102974-54102993 | None:intergenic | 30.0% |
| CATTCATTCACAAAATTCGA+TGG | + | chr3_3:54103330-54103349 | Msa0458420:intron | 30.0% | |
| CACTCATCATAAATATATGC+AGG | + | chr3_3:54103714-54103733 | Msa0458420:intron | 30.0% | |
| ! | TGAGAAATTGATGGATAAAG+TGG | + | chr3_3:54103807-54103826 | Msa0458420:CDS | 30.0% |
| !! | AAAGAAGTACTTCACAAAGA+AGG | + | chr3_3:54103841-54103860 | Msa0458420:CDS | 30.0% |
| GTTTCAAATCCATATGATCA+AGG | + | chr3_3:54104143-54104162 | Msa0458420:CDS | 30.0% | |
| TTGTTCTTACCTTGATCATA+TGG | - | chr3_3:54104155-54104174 | None:intergenic | 30.0% | |
| !!! | GTTTTGTTTGAAAAGAGACA+TGG | - | chr3_3:54102974-54102993 | None:intergenic | 30.0% |
| CATTCATTCACAAAATTCGA+TGG | + | chr3_3:54103330-54103349 | Msa0458420:intron | 30.0% | |
| CACTCATCATAAATATATGC+AGG | + | chr3_3:54103714-54103733 | Msa0458420:intron | 30.0% | |
| ! | TGAGAAATTGATGGATAAAG+TGG | + | chr3_3:54103807-54103826 | Msa0458420:CDS | 30.0% |
| !! | AAAGAAGTACTTCACAAAGA+AGG | + | chr3_3:54103841-54103860 | Msa0458420:CDS | 30.0% |
| GTTTCAAATCCATATGATCA+AGG | + | chr3_3:54104143-54104162 | Msa0458420:CDS | 30.0% | |
| TTGTTCTTACCTTGATCATA+TGG | - | chr3_3:54104155-54104174 | None:intergenic | 30.0% | |
| AGACACCTTTAATAGAGACT+CGG | + | chr3_3:54103520-54103539 | Msa0458420:CDS | 35.0% | |
| !!! | CTTCCCTCAATTTTTTCACT+TGG | - | chr3_3:54104028-54104047 | None:intergenic | 35.0% |
| AACTAGCACAGCTGATTAAT+GGG | + | chr3_3:54104072-54104091 | Msa0458420:CDS | 35.0% | |
| ATGAACAATTCCATGCTGTT+GGG | - | chr3_3:54104345-54104364 | None:intergenic | 35.0% | |
| AGACACCTTTAATAGAGACT+CGG | + | chr3_3:54103520-54103539 | Msa0458420:CDS | 35.0% | |
| !!! | CTTCCCTCAATTTTTTCACT+TGG | - | chr3_3:54104028-54104047 | None:intergenic | 35.0% |
| AACTAGCACAGCTGATTAAT+GGG | + | chr3_3:54104072-54104091 | Msa0458420:CDS | 35.0% | |
| ATGAACAATTCCATGCTGTT+GGG | - | chr3_3:54104345-54104364 | None:intergenic | 35.0% | |
| TCCAACAAGTGGTTCAGTTT+GGG | + | chr3_3:54103007-54103026 | Msa0458420:CDS | 40.0% | |
| GTTTGCAGCAGAATGGTTAA+AGG | - | chr3_3:54103039-54103058 | None:intergenic | 40.0% | |
| AACCATTCTGCTGCAAACTT+CGG | + | chr3_3:54103041-54103060 | Msa0458420:CDS | 40.0% | |
| TGCAAACTTCGGAGCTAATT+TGG | + | chr3_3:54103052-54103071 | Msa0458420:CDS | 40.0% | |
| GCAAACTTCGGAGCTAATTT+GGG | + | chr3_3:54103053-54103072 | Msa0458420:CDS | 40.0% | |
| AAGACCGTCTGATTCTCTTA+GGG | - | chr3_3:54103079-54103098 | None:intergenic | 40.0% | |
| TAAGACCGTCTGATTCTCTT+AGG | - | chr3_3:54103080-54103099 | None:intergenic | 40.0% | |
| ATTTACGCATTCAGAGACAC+CGG | - | chr3_3:54103464-54103483 | None:intergenic | 40.0% | |
| TGAGTCCGAGTCTCTATTAA+AGG | - | chr3_3:54103528-54103547 | None:intergenic | 40.0% | |
| ACTCAACTCATAGATCCAGA+CGG | + | chr3_3:54103543-54103562 | Msa0458420:CDS | 40.0% | |
| !!! | CCAACATCAAAGAGTGCTTT+TGG | - | chr3_3:54103783-54103802 | None:intergenic | 40.0% |
| !! | CCAAAAGCACTCTTTGATGT+TGG | + | chr3_3:54103780-54103799 | Msa0458420:CDS | 40.0% |
| CTATGTCAATCAACAAGCTG+AGG | + | chr3_3:54104049-54104068 | Msa0458420:CDS | 40.0% | |
| GAACTAGCACAGCTGATTAA+TGG | + | chr3_3:54104071-54104090 | Msa0458420:CDS | 40.0% | |
| GAGTCTAGATCATTGGACAT+TGG | - | chr3_3:54104116-54104135 | None:intergenic | 40.0% | |
| GACCATTACAAAGCCAAATG+TGG | + | chr3_3:54104286-54104305 | Msa0458420:CDS | 40.0% | |
| !! | GTCCACATTTGGCTTTGTAA+TGG | - | chr3_3:54104291-54104310 | None:intergenic | 40.0% |
| CATGAACAATTCCATGCTGT+TGG | - | chr3_3:54104346-54104365 | None:intergenic | 40.0% | |
| CAACAGCATGGAATTGTTCA+TGG | + | chr3_3:54104344-54104363 | Msa0458420:CDS | 40.0% | |
| GCATGGAATTGTTCATGGAT+TGG | + | chr3_3:54104349-54104368 | Msa0458420:CDS | 40.0% | |
| !! | GGAATTGTTCATGGATTGGA+TGG | + | chr3_3:54104353-54104372 | Msa0458420:CDS | 40.0% |
| TCCAACAAGTGGTTCAGTTT+GGG | + | chr3_3:54103007-54103026 | Msa0458420:CDS | 40.0% | |
| GTTTGCAGCAGAATGGTTAA+AGG | - | chr3_3:54103039-54103058 | None:intergenic | 40.0% | |
| AACCATTCTGCTGCAAACTT+CGG | + | chr3_3:54103041-54103060 | Msa0458420:CDS | 40.0% | |
| TGCAAACTTCGGAGCTAATT+TGG | + | chr3_3:54103052-54103071 | Msa0458420:CDS | 40.0% | |
| GCAAACTTCGGAGCTAATTT+GGG | + | chr3_3:54103053-54103072 | Msa0458420:CDS | 40.0% | |
| AAGACCGTCTGATTCTCTTA+GGG | - | chr3_3:54103079-54103098 | None:intergenic | 40.0% | |
| TAAGACCGTCTGATTCTCTT+AGG | - | chr3_3:54103080-54103099 | None:intergenic | 40.0% | |
| ATTTACGCATTCAGAGACAC+CGG | - | chr3_3:54103464-54103483 | None:intergenic | 40.0% | |
| TGAGTCCGAGTCTCTATTAA+AGG | - | chr3_3:54103528-54103547 | None:intergenic | 40.0% | |
| ACTCAACTCATAGATCCAGA+CGG | + | chr3_3:54103543-54103562 | Msa0458420:CDS | 40.0% | |
| !!! | CCAACATCAAAGAGTGCTTT+TGG | - | chr3_3:54103783-54103802 | None:intergenic | 40.0% |
| !! | CCAAAAGCACTCTTTGATGT+TGG | + | chr3_3:54103780-54103799 | Msa0458420:CDS | 40.0% |
| CTATGTCAATCAACAAGCTG+AGG | + | chr3_3:54104049-54104068 | Msa0458420:CDS | 40.0% | |
| GAACTAGCACAGCTGATTAA+TGG | + | chr3_3:54104071-54104090 | Msa0458420:CDS | 40.0% | |
| GAGTCTAGATCATTGGACAT+TGG | - | chr3_3:54104116-54104135 | None:intergenic | 40.0% | |
| GACCATTACAAAGCCAAATG+TGG | + | chr3_3:54104286-54104305 | Msa0458420:CDS | 40.0% | |
| !! | GTCCACATTTGGCTTTGTAA+TGG | - | chr3_3:54104291-54104310 | None:intergenic | 40.0% |
| CATGAACAATTCCATGCTGT+TGG | - | chr3_3:54104346-54104365 | None:intergenic | 40.0% | |
| CAACAGCATGGAATTGTTCA+TGG | + | chr3_3:54104344-54104363 | Msa0458420:CDS | 40.0% | |
| GCATGGAATTGTTCATGGAT+TGG | + | chr3_3:54104349-54104368 | Msa0458420:CDS | 40.0% | |
| !! | GGAATTGTTCATGGATTGGA+TGG | + | chr3_3:54104353-54104372 | Msa0458420:CDS | 40.0% |
| CTTGTTGGAGGACATAAAGG+TGG | - | chr3_3:54102996-54103015 | None:intergenic | 45.0% | |
| ! | CCACTTGTTGGAGGACATAA+AGG | - | chr3_3:54102999-54103018 | None:intergenic | 45.0% |
| CCTTTATGTCCTCCAACAAG+TGG | + | chr3_3:54102996-54103015 | Msa0458420:CDS | 45.0% | |
| ! | CAAACTGAACCACTTGTTGG+AGG | - | chr3_3:54103008-54103027 | None:intergenic | 45.0% |
| CTCCAACAAGTGGTTCAGTT+TGG | + | chr3_3:54103006-54103025 | Msa0458420:CDS | 45.0% | |
| CCAACAAGTGGTTCAGTTTG+GGG | + | chr3_3:54103008-54103027 | Msa0458420:CDS | 45.0% | |
| ATACTGATCTTGCTTCCGTC+TGG | - | chr3_3:54103561-54103580 | None:intergenic | 45.0% | |
| GTTGGAGCGTGAGAAATTGA+TGG | + | chr3_3:54103798-54103817 | Msa0458420:CDS | 45.0% | |
| AAATGTGGACACCACCTATG+CGG | + | chr3_3:54104301-54104320 | Msa0458420:CDS | 45.0% | |
| CTTGTTGGAGGACATAAAGG+TGG | - | chr3_3:54102996-54103015 | None:intergenic | 45.0% | |
| ! | CCACTTGTTGGAGGACATAA+AGG | - | chr3_3:54102999-54103018 | None:intergenic | 45.0% |
| CCTTTATGTCCTCCAACAAG+TGG | + | chr3_3:54102996-54103015 | Msa0458420:CDS | 45.0% | |
| ! | CAAACTGAACCACTTGTTGG+AGG | - | chr3_3:54103008-54103027 | None:intergenic | 45.0% |
| CTCCAACAAGTGGTTCAGTT+TGG | + | chr3_3:54103006-54103025 | Msa0458420:CDS | 45.0% | |
| CCAACAAGTGGTTCAGTTTG+GGG | + | chr3_3:54103008-54103027 | Msa0458420:CDS | 45.0% | |
| ATACTGATCTTGCTTCCGTC+TGG | - | chr3_3:54103561-54103580 | None:intergenic | 45.0% | |
| GTTGGAGCGTGAGAAATTGA+TGG | + | chr3_3:54103798-54103817 | Msa0458420:CDS | 45.0% | |
| AAATGTGGACACCACCTATG+CGG | + | chr3_3:54104301-54104320 | Msa0458420:CDS | 45.0% | |
| !!! | ATTTATTTTTTAAATTACAT+AGG | + | chr3_3:54104264-54104283 | Msa0458420:intron | 5.0% |
| !!! | ATTTATTTTTTAAATTACAT+AGG | + | chr3_3:54104264-54104283 | Msa0458420:intron | 5.0% |
| CCCCAAACTGAACCACTTGT+TGG | - | chr3_3:54103011-54103030 | None:intergenic | 50.0% | |
| CTCCGAAGTTTGCAGCAGAA+TGG | - | chr3_3:54103046-54103065 | None:intergenic | 50.0% | |
| TGGGCCCTAAGAGAATCAGA+CGG | + | chr3_3:54103072-54103091 | Msa0458420:CDS | 50.0% | |
| GCATAGGTGGTGTCCACATT+TGG | - | chr3_3:54104302-54104321 | None:intergenic | 50.0% | |
| AATGTGGACACCACCTATGC+GGG | + | chr3_3:54104302-54104321 | Msa0458420:CDS | 50.0% | |
| CGAAACAGAACCCAACAGCA+TGG | + | chr3_3:54104332-54104351 | Msa0458420:CDS | 50.0% | |
| CCCCAAACTGAACCACTTGT+TGG | - | chr3_3:54103011-54103030 | None:intergenic | 50.0% | |
| CTCCGAAGTTTGCAGCAGAA+TGG | - | chr3_3:54103046-54103065 | None:intergenic | 50.0% | |
| TGGGCCCTAAGAGAATCAGA+CGG | + | chr3_3:54103072-54103091 | Msa0458420:CDS | 50.0% | |
| GCATAGGTGGTGTCCACATT+TGG | - | chr3_3:54104302-54104321 | None:intergenic | 50.0% | |
| AATGTGGACACCACCTATGC+GGG | + | chr3_3:54104302-54104321 | Msa0458420:CDS | 50.0% | |
| CGAAACAGAACCCAACAGCA+TGG | + | chr3_3:54104332-54104351 | Msa0458420:CDS | 50.0% | |
| GTTTCGTGCTCATCCCGCAT+AGG | - | chr3_3:54104318-54104337 | None:intergenic | 55.0% | |
| GTTTCGTGCTCATCCCGCAT+AGG | - | chr3_3:54104318-54104337 | None:intergenic | 55.0% | |
| TCGTGCTCATCCCGCATAGG+TGG | - | chr3_3:54104315-54104334 | None:intergenic | 60.0% | |
| TCGTGCTCATCCCGCATAGG+TGG | - | chr3_3:54104315-54104334 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 54102945 | 54104407 | 54102945 | ID=Msa0458420;Name=Msa0458420 |
| chr3_3 | mRNA | 54102945 | 54104407 | 54102945 | ID=Msa0458420-mRNA-1;Parent=Msa0458420;Name=Msa0458420-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|5|0|221 |
| chr3_3 | exon | 54102945 | 54103102 | 54102945 | ID=Msa0458420-mRNA-1:exon:10652;Parent=Msa0458420-mRNA-1 |
| chr3_3 | exon | 54103520 | 54103616 | 54103520 | ID=Msa0458420-mRNA-1:exon:10653;Parent=Msa0458420-mRNA-1 |
| chr3_3 | exon | 54103736 | 54103862 | 54103736 | ID=Msa0458420-mRNA-1:exon:10654;Parent=Msa0458420-mRNA-1 |
| chr3_3 | exon | 54104003 | 54104164 | 54104003 | ID=Msa0458420-mRNA-1:exon:10655;Parent=Msa0458420-mRNA-1 |
| chr3_3 | exon | 54104286 | 54104407 | 54104286 | ID=Msa0458420-mRNA-1:exon:10656;Parent=Msa0458420-mRNA-1 |
| chr3_3 | CDS | 54102945 | 54103102 | 54102945 | ID=Msa0458420-mRNA-1:cds;Parent=Msa0458420-mRNA-1 |
| chr3_3 | CDS | 54103520 | 54103616 | 54103520 | ID=Msa0458420-mRNA-1:cds;Parent=Msa0458420-mRNA-1 |
| chr3_3 | CDS | 54103736 | 54103862 | 54103736 | ID=Msa0458420-mRNA-1:cds;Parent=Msa0458420-mRNA-1 |
| chr3_3 | CDS | 54104003 | 54104164 | 54104003 | ID=Msa0458420-mRNA-1:cds;Parent=Msa0458420-mRNA-1 |
| chr3_3 | CDS | 54104286 | 54104407 | 54104286 | ID=Msa0458420-mRNA-1:cds;Parent=Msa0458420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
