Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332460 | XP_003596299.1 | 92.508 | 307 | 20 | 3 | 1 | 305 | 1 | 306 | 0.0 | 538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332460 | sp|Q9LY00|WRK70_ARATH | 32.836 | 201 | 110 | 4 | 9 | 208 | 3 | 179 | 4.77e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0332460 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0254690 | Msa0332460 | 0.932739 | 5.415331e-95 | -8.615850e-47 |
| Msa0293990 | Msa0332460 | 0.909380 | 6.070613e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332460 | MtrunA17_Chr2g0315361 | 92.508 | 307 | 20 | 3 | 1 | 305 | 1 | 306 | 0.0 | 538 |
| Msa0332460 | MtrunA17_Chr2g0315371 | 75.563 | 311 | 59 | 4 | 1 | 305 | 1 | 300 | 1.83e-161 | 451 |
| Msa0332460 | MtrunA17_Chr2g0315381 | 74.098 | 305 | 73 | 5 | 1 | 305 | 1 | 299 | 3.81e-149 | 421 |
| Msa0332460 | MtrunA17_Chr7g0244981 | 37.891 | 256 | 126 | 6 | 12 | 267 | 10 | 232 | 9.54e-49 | 164 |
| Msa0332460 | MtrunA17_Chr7g0244971 | 38.983 | 236 | 115 | 5 | 12 | 245 | 11 | 219 | 5.96e-48 | 162 |
| Msa0332460 | MtrunA17_Chr8g0334541 | 38.627 | 233 | 94 | 6 | 19 | 245 | 8 | 197 | 8.05e-41 | 143 |
| Msa0332460 | MtrunA17_Chr8g0350621 | 36.735 | 245 | 107 | 9 | 10 | 245 | 3 | 208 | 2.10e-40 | 141 |
| Msa0332460 | MtrunA17_Chr3g0128671 | 36.946 | 203 | 101 | 7 | 62 | 244 | 47 | 242 | 1.12e-29 | 114 |
| Msa0332460 | MtrunA17_Chr5g0428351 | 39.831 | 118 | 68 | 2 | 132 | 249 | 167 | 281 | 3.18e-23 | 97.4 |
| Msa0332460 | MtrunA17_Chr2g0315401 | 42.520 | 127 | 66 | 3 | 178 | 304 | 20 | 139 | 2.25e-22 | 90.9 |
| Msa0332460 | MtrunA17_Chr7g0275531 | 45.361 | 97 | 44 | 2 | 132 | 219 | 92 | 188 | 4.58e-20 | 89.0 |
| Msa0332460 | MtrunA17_Chr3g0126391 | 30.093 | 216 | 102 | 7 | 14 | 208 | 5 | 192 | 4.87e-19 | 85.9 |
| Msa0332460 | MtrunA17_Chr2g0315341 | 40.650 | 123 | 65 | 4 | 185 | 304 | 1 | 118 | 9.84e-19 | 80.5 |
| Msa0332460 | MtrunA17_Chr8g0387981 | 30.000 | 210 | 112 | 5 | 10 | 208 | 6 | 191 | 1.56e-18 | 84.7 |
| Msa0332460 | MtrunA17_Chr8g0350631 | 52.564 | 78 | 32 | 2 | 170 | 245 | 5 | 79 | 1.90e-18 | 80.5 |
| Msa0332460 | MtrunA17_Chr8g0347251 | 43.158 | 95 | 45 | 2 | 125 | 211 | 105 | 198 | 9.81e-18 | 82.4 |
| Msa0332460 | MtrunA17_Chr7g0224801 | 50.649 | 77 | 34 | 2 | 147 | 223 | 91 | 163 | 4.29e-16 | 74.7 |
| Msa0332460 | MtrunA17_Chr2g0315351 | 42.241 | 116 | 52 | 6 | 8 | 121 | 6 | 108 | 9.12e-16 | 72.4 |
| Msa0332460 | MtrunA17_Chr2g0315391 | 41.379 | 116 | 53 | 6 | 8 | 121 | 6 | 108 | 2.41e-15 | 71.2 |
| Msa0332460 | MtrunA17_Chr7g0248721 | 40.000 | 105 | 51 | 5 | 105 | 206 | 99 | 194 | 6.66e-15 | 72.4 |
| Msa0332460 | MtrunA17_Chr7g0270191 | 39.773 | 88 | 50 | 1 | 120 | 207 | 116 | 200 | 1.32e-14 | 72.8 |
| Msa0332460 | MtrunA17_Chr8g0383351 | 50.000 | 60 | 27 | 1 | 147 | 206 | 158 | 214 | 1.88e-14 | 71.6 |
| Msa0332460 | MtrunA17_Chr1g0194481 | 40.909 | 88 | 49 | 1 | 120 | 207 | 129 | 213 | 2.81e-14 | 72.4 |
| Msa0332460 | MtrunA17_Chr3g0129361 | 49.180 | 61 | 28 | 1 | 147 | 207 | 142 | 199 | 3.57e-14 | 70.5 |
| Msa0332460 | MtrunA17_Chr8g0335811 | 40.000 | 90 | 48 | 2 | 120 | 206 | 122 | 208 | 3.75e-14 | 70.5 |
| Msa0332460 | MtrunA17_Chr5g0431811 | 33.582 | 134 | 74 | 3 | 107 | 235 | 631 | 754 | 1.55e-13 | 71.2 |
| Msa0332460 | MtrunA17_Chr5g0418781 | 39.326 | 89 | 48 | 2 | 148 | 233 | 123 | 208 | 1.81e-13 | 69.3 |
| Msa0332460 | MtrunA17_Chr4g0068541 | 50.847 | 59 | 26 | 1 | 148 | 206 | 207 | 262 | 2.79e-13 | 69.7 |
| Msa0332460 | MtrunA17_Chr5g0443131 | 52.542 | 59 | 25 | 1 | 148 | 206 | 156 | 211 | 2.94e-13 | 68.9 |
| Msa0332460 | MtrunA17_Chr2g0294231 | 45.946 | 74 | 37 | 1 | 148 | 221 | 202 | 272 | 7.08e-13 | 68.6 |
| Msa0332460 | MtrunA17_Chr7g0263531 | 48.387 | 62 | 29 | 1 | 145 | 206 | 357 | 415 | 7.18e-13 | 68.6 |
| Msa0332460 | MtrunA17_Chr5g0418191 | 50.000 | 60 | 27 | 1 | 147 | 206 | 318 | 374 | 1.05e-12 | 68.2 |
| Msa0332460 | MtrunA17_Chr4g0051881 | 50.847 | 59 | 26 | 1 | 148 | 206 | 177 | 232 | 1.23e-12 | 67.4 |
| Msa0332460 | MtrunA17_Chr7g0218081 | 48.333 | 60 | 28 | 1 | 147 | 206 | 408 | 464 | 1.41e-12 | 67.8 |
| Msa0332460 | MtrunA17_Chr7g0218081 | 45.902 | 61 | 29 | 2 | 146 | 206 | 225 | 281 | 4.21e-11 | 63.5 |
| Msa0332460 | MtrunA17_Chr4g0042831 | 48.333 | 60 | 28 | 1 | 147 | 206 | 276 | 332 | 2.51e-12 | 67.0 |
| Msa0332460 | MtrunA17_Chr8g0386241 | 33.099 | 142 | 80 | 5 | 73 | 206 | 23 | 157 | 2.53e-12 | 64.3 |
| Msa0332460 | MtrunA17_Chr1g0147881 | 34.286 | 105 | 62 | 4 | 104 | 206 | 218 | 317 | 3.55e-12 | 66.2 |
| Msa0332460 | MtrunA17_Chr4g0071521 | 37.349 | 83 | 50 | 1 | 124 | 206 | 220 | 300 | 5.51e-12 | 65.5 |
| Msa0332460 | MtrunA17_Chr8g0348311 | 37.634 | 93 | 51 | 2 | 121 | 213 | 132 | 217 | 9.25e-12 | 65.1 |
| Msa0332460 | MtrunA17_Chr3g0101131 | 46.667 | 60 | 29 | 1 | 147 | 206 | 413 | 469 | 1.12e-11 | 65.5 |
| Msa0332460 | MtrunA17_Chr5g0445311 | 46.667 | 60 | 29 | 1 | 147 | 206 | 362 | 418 | 1.14e-11 | 65.1 |
| Msa0332460 | MtrunA17_Chr1g0150801 | 43.939 | 66 | 34 | 1 | 142 | 207 | 95 | 157 | 3.14e-11 | 60.8 |
| Msa0332460 | MtrunA17_Chr7g0238921 | 51.667 | 60 | 26 | 1 | 147 | 206 | 122 | 178 | 4.10e-11 | 62.8 |
| Msa0332460 | MtrunA17_Chr5g0432161 | 48.333 | 60 | 28 | 1 | 147 | 206 | 419 | 475 | 4.19e-11 | 63.5 |
| Msa0332460 | MtrunA17_Chr8g0350641 | 34.211 | 114 | 62 | 4 | 57 | 169 | 38 | 139 | 5.30e-11 | 59.7 |
| Msa0332460 | MtrunA17_Chr3g0079691 | 37.079 | 89 | 48 | 2 | 147 | 230 | 493 | 578 | 5.96e-11 | 63.2 |
| Msa0332460 | MtrunA17_Chr1g0184691 | 38.667 | 75 | 44 | 1 | 132 | 206 | 276 | 348 | 7.61e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332460 | AT3G56400.1 | 32.836 | 201 | 110 | 4 | 9 | 208 | 3 | 179 | 4.85e-25 | 102 |
| Msa0332460 | AT5G22570.1 | 33.503 | 197 | 103 | 6 | 64 | 259 | 42 | 211 | 1.66e-24 | 100 |
| Msa0332460 | AT5G01900.1 | 32.323 | 198 | 100 | 5 | 13 | 209 | 6 | 170 | 1.73e-23 | 97.4 |
| Msa0332460 | AT1G66560.1 | 60.294 | 68 | 26 | 1 | 149 | 215 | 103 | 170 | 3.52e-22 | 93.6 |
| Msa0332460 | AT1G66600.1 | 42.857 | 112 | 48 | 3 | 148 | 243 | 102 | 213 | 4.22e-22 | 93.2 |
| Msa0332460 | AT1G66550.2 | 55.882 | 68 | 29 | 1 | 149 | 215 | 103 | 170 | 1.56e-20 | 89.0 |
| Msa0332460 | AT1G66550.1 | 55.882 | 68 | 29 | 1 | 149 | 215 | 108 | 175 | 2.25e-20 | 88.6 |
| Msa0332460 | AT2G46400.1 | 30.102 | 196 | 100 | 5 | 13 | 208 | 5 | 163 | 2.02e-19 | 87.0 |
| Msa0332460 | AT4G11070.1 | 29.936 | 157 | 101 | 2 | 61 | 208 | 44 | 200 | 3.77e-19 | 86.3 |
| Msa0332460 | AT1G80590.1 | 41.379 | 87 | 51 | 0 | 128 | 214 | 64 | 150 | 4.81e-19 | 84.7 |
| Msa0332460 | AT2G40750.1 | 31.068 | 206 | 130 | 6 | 13 | 210 | 12 | 213 | 3.52e-18 | 84.0 |
| Msa0332460 | AT4G11070.2 | 42.105 | 95 | 47 | 1 | 122 | 208 | 74 | 168 | 6.84e-18 | 82.4 |
| Msa0332460 | AT4G23810.1 | 28.358 | 201 | 112 | 5 | 89 | 260 | 91 | 288 | 3.76e-17 | 80.9 |
| Msa0332460 | AT5G24110.1 | 33.987 | 153 | 73 | 3 | 63 | 208 | 41 | 172 | 8.46e-17 | 79.7 |
| Msa0332460 | AT2G40740.1 | 52.381 | 63 | 30 | 0 | 149 | 211 | 173 | 235 | 1.37e-16 | 79.0 |
| Msa0332460 | AT2G40740.3 | 52.381 | 63 | 30 | 0 | 149 | 211 | 182 | 244 | 1.90e-16 | 78.6 |
| Msa0332460 | AT2G46130.1 | 53.030 | 66 | 26 | 2 | 142 | 206 | 23 | 84 | 8.60e-15 | 69.7 |
| Msa0332460 | AT4G39410.1 | 42.553 | 94 | 48 | 3 | 125 | 215 | 196 | 286 | 2.11e-14 | 72.8 |
| Msa0332460 | AT4G18170.1 | 41.379 | 87 | 48 | 1 | 120 | 206 | 143 | 226 | 2.85e-14 | 72.4 |
| Msa0332460 | AT5G49520.1 | 53.333 | 60 | 25 | 1 | 148 | 207 | 220 | 276 | 4.11e-14 | 72.8 |
| Msa0332460 | AT2G44745.1 | 43.902 | 82 | 40 | 2 | 128 | 206 | 121 | 199 | 5.99e-14 | 70.1 |
| Msa0332460 | AT1G64000.1 | 51.667 | 60 | 26 | 1 | 147 | 206 | 112 | 168 | 8.11e-14 | 69.3 |
| Msa0332460 | AT5G41570.1 | 38.636 | 88 | 48 | 2 | 122 | 206 | 68 | 152 | 1.53e-13 | 68.2 |
| Msa0332460 | AT2G37260.1 | 50.847 | 59 | 26 | 1 | 148 | 206 | 348 | 403 | 1.90e-13 | 70.9 |
| Msa0332460 | AT2G37260.2 | 50.847 | 59 | 26 | 1 | 148 | 206 | 266 | 321 | 2.15e-13 | 70.1 |
| Msa0332460 | AT2G37260.3 | 50.847 | 59 | 26 | 1 | 148 | 206 | 268 | 323 | 2.15e-13 | 70.1 |
| Msa0332460 | AT2G47260.1 | 39.773 | 88 | 50 | 1 | 120 | 207 | 145 | 229 | 2.82e-13 | 69.7 |
| Msa0332460 | AT1G29860.1 | 41.000 | 100 | 54 | 2 | 109 | 206 | 94 | 190 | 2.98e-13 | 69.3 |
| Msa0332460 | AT1G69310.4 | 49.153 | 59 | 27 | 1 | 148 | 206 | 146 | 201 | 4.99e-13 | 68.6 |
| Msa0332460 | AT1G69310.2 | 49.153 | 59 | 27 | 1 | 148 | 206 | 146 | 201 | 4.99e-13 | 68.6 |
| Msa0332460 | AT1G69310.1 | 49.153 | 59 | 27 | 1 | 148 | 206 | 146 | 201 | 4.99e-13 | 68.6 |
| Msa0332460 | AT1G13960.1 | 50.000 | 60 | 27 | 1 | 147 | 206 | 407 | 463 | 7.28e-13 | 69.3 |
| Msa0332460 | AT2G03340.1 | 50.000 | 60 | 27 | 1 | 147 | 206 | 413 | 469 | 1.34e-12 | 68.6 |
| Msa0332460 | AT1G13960.2 | 50.000 | 60 | 27 | 1 | 147 | 206 | 254 | 310 | 1.57e-12 | 67.8 |
| Msa0332460 | AT5G46350.1 | 47.692 | 65 | 31 | 1 | 142 | 206 | 176 | 237 | 1.79e-12 | 67.4 |
| Msa0332460 | AT5G13080.1 | 49.180 | 61 | 28 | 1 | 147 | 207 | 65 | 122 | 2.60e-12 | 63.9 |
| Msa0332460 | AT4G26640.7 | 40.000 | 100 | 49 | 4 | 147 | 240 | 339 | 433 | 3.67e-12 | 67.0 |
| Msa0332460 | AT4G26640.2 | 40.000 | 100 | 49 | 4 | 147 | 240 | 379 | 473 | 4.08e-12 | 67.0 |
| Msa0332460 | AT4G26640.1 | 40.000 | 100 | 49 | 4 | 147 | 240 | 307 | 401 | 4.18e-12 | 67.0 |
| Msa0332460 | AT2G04880.2 | 45.902 | 61 | 29 | 2 | 146 | 206 | 108 | 164 | 5.00e-12 | 66.6 |
| Msa0332460 | AT2G04880.2 | 46.667 | 60 | 29 | 1 | 147 | 206 | 281 | 337 | 3.35e-11 | 63.9 |
| Msa0332460 | AT4G26640.5 | 40.000 | 100 | 49 | 4 | 147 | 240 | 203 | 297 | 5.14e-12 | 66.2 |
| Msa0332460 | AT4G26640.6 | 40.000 | 100 | 49 | 4 | 147 | 240 | 203 | 297 | 5.14e-12 | 66.2 |
| Msa0332460 | AT4G26640.4 | 40.000 | 100 | 49 | 4 | 147 | 240 | 203 | 297 | 5.14e-12 | 66.2 |
| Msa0332460 | AT4G26640.3 | 40.000 | 100 | 49 | 4 | 147 | 240 | 203 | 297 | 5.14e-12 | 66.2 |
| Msa0332460 | AT2G04880.1 | 45.902 | 61 | 29 | 2 | 146 | 206 | 108 | 164 | 5.84e-12 | 66.6 |
| Msa0332460 | AT2G04880.1 | 46.667 | 60 | 29 | 1 | 147 | 206 | 305 | 361 | 4.40e-11 | 63.9 |
| Msa0332460 | AT3G01970.1 | 47.541 | 61 | 29 | 1 | 147 | 207 | 63 | 120 | 1.85e-11 | 61.6 |
| Msa0332460 | AT5G26170.1 | 40.278 | 72 | 35 | 2 | 146 | 217 | 110 | 173 | 2.07e-11 | 62.0 |
| Msa0332460 | AT2G23320.1 | 33.333 | 117 | 72 | 2 | 94 | 206 | 181 | 295 | 3.15e-11 | 63.5 |
| Msa0332460 | AT4G26440.1 | 50.000 | 58 | 25 | 2 | 149 | 206 | 178 | 231 | 4.55e-11 | 63.9 |
| Msa0332460 | AT2G30590.1 | 36.145 | 83 | 51 | 1 | 124 | 206 | 288 | 368 | 5.83e-11 | 63.2 |
| Msa0332460 | AT3G01080.2 | 46.154 | 65 | 32 | 1 | 142 | 206 | 337 | 398 | 6.39e-11 | 63.2 |
| Msa0332460 | AT5G45260.1 | 34.862 | 109 | 57 | 3 | 100 | 206 | 1169 | 1265 | 6.68e-11 | 63.5 |
| Msa0332460 | AT3G01080.1 | 46.154 | 65 | 32 | 1 | 142 | 206 | 299 | 360 | 8.61e-11 | 62.8 |
| Msa0332460 | AT3G62340.1 | 48.333 | 60 | 28 | 1 | 148 | 207 | 117 | 173 | 9.85e-11 | 61.6 |
Find 51 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCAGCAACAATATTTA+AGG | 0.169221 | 2_4:-49538908 | None:intergenic |
| CTTTGGTTTCCAACAAATTA+TGG | 0.174160 | 2_4:+49538751 | Msa0332460:CDS |
| TTACCATTCAGACTTAAATT+TGG | 0.184409 | 2_4:+49540721 | Msa0332460:CDS |
| AGATATATACCTGAAATATT+TGG | 0.232157 | 2_4:-49540438 | None:intergenic |
| TAAGATGAAGGAGGAGGATT+TGG | 0.258950 | 2_4:+49539053 | Msa0332460:CDS |
| TCCAACAAATTATGGCAAAA+AGG | 0.278256 | 2_4:+49538759 | Msa0332460:CDS |
| TCACAAATGCCAAATATTTC+AGG | 0.281113 | 2_4:+49540429 | Msa0332460:CDS |
| TCAAATATTAGAGAAGTTAA+AGG | 0.289246 | 2_4:+49538856 | Msa0332460:CDS |
| AGAGTCATCAGAGGAGAAAA+TGG | 0.295638 | 2_4:-49540747 | None:intergenic |
| AAACATCAAAATCGCATAAC+TGG | 0.325641 | 2_4:-49540931 | None:intergenic |
| AATCCTCCTCCTTCATCTTA+TGG | 0.329589 | 2_4:-49539050 | None:intergenic |
| ATAACCATCATCAATCAATT+TGG | 0.330019 | 2_4:-49540378 | None:intergenic |
| TTGTACCGGACTACATATTA+TGG | 0.352265 | 2_4:+49540677 | Msa0332460:CDS |
| GATTCTCCGGTGAGAACAAT+TGG | 0.405307 | 2_4:-49540907 | None:intergenic |
| TCTTCAGCAACAATATTTAA+GGG | 0.422613 | 2_4:-49538907 | None:intergenic |
| ATATAATGGAGAATATGCTT+TGG | 0.450388 | 2_4:+49538734 | None:intergenic |
| AACTAATTGCCATAAGATGA+AGG | 0.451557 | 2_4:+49539041 | Msa0332460:CDS |
| AGTAATCAAGAATATCCGTT+TGG | 0.452427 | 2_4:+49540803 | Msa0332460:CDS |
| TATAGGAACAGCCACATCAT+TGG | 0.461888 | 2_4:-49538995 | None:intergenic |
| CAAATATTAGAGAAGTTAAA+GGG | 0.464900 | 2_4:+49538857 | Msa0332460:CDS |
| ATTCCAAATTTAAGTCTGAA+TGG | 0.467467 | 2_4:-49540724 | None:intergenic |
| GCCTCCAAATTGATTGATGA+TGG | 0.475537 | 2_4:+49540374 | Msa0332460:CDS |
| CCACTTCTTGCATCTACAAA+CGG | 0.482853 | 2_4:+49540842 | Msa0332460:CDS |
| AAGATGAAGGAGGAGGATTT+GGG | 0.487137 | 2_4:+49539054 | Msa0332460:CDS |
| ATGTATGCAGGAGCTACTAT+AGG | 0.489699 | 2_4:+49540585 | Msa0332460:intron |
| TCATGATGTATCTCTTCCTT+AGG | 0.501188 | 2_4:-49540869 | None:intergenic |
| TCGCATAACTGGAGATTCTC+CGG | 0.520000 | 2_4:-49540920 | None:intergenic |
| AAAAGAACCCTTCGTTGTAC+CGG | 0.521119 | 2_4:+49540663 | Msa0332460:CDS |
| ATCTACAAACGGAGATCCTA+AGG | 0.526669 | 2_4:+49540853 | Msa0332460:CDS |
| TAGGTCAAGTGCACCAACTT+GGG | 0.530587 | 2_4:+49540343 | Msa0332460:intron |
| TTAGGTCAAGTGCACCAACT+TGG | 0.536533 | 2_4:+49540342 | Msa0332460:intron |
| ACCATCATCAATCAATTTGG+AGG | 0.542680 | 2_4:-49540375 | None:intergenic |
| GATGACCATAATATGTAGTC+CGG | 0.554702 | 2_4:-49540682 | None:intergenic |
| GGTTATACATGGAGAAAGTA+CGG | 0.556459 | 2_4:+49540395 | Msa0332460:CDS |
| ATGTAGTCCGGTACAACGAA+GGG | 0.569798 | 2_4:-49540670 | None:intergenic |
| TGATTGATGATGGTTATACA+TGG | 0.570958 | 2_4:+49540384 | Msa0332460:CDS |
| TTGCCATAAGATGAAGGAGG+AGG | 0.573073 | 2_4:+49539047 | Msa0332460:CDS |
| TGCACCAACTTGGGAAAAGA+CGG | 0.575025 | 2_4:+49540352 | Msa0332460:CDS |
| TCAAAACCAATTGTTCTCAC+CGG | 0.575943 | 2_4:+49540901 | Msa0332460:CDS |
| ATGAAGGAGGAGGATTTGGG+TGG | 0.585719 | 2_4:+49539057 | Msa0332460:CDS |
| AATGGTGGTGACTGTCCAAA+CGG | 0.615715 | 2_4:-49540818 | None:intergenic |
| CCGTTTGTAGATGCAAGAAG+TGG | 0.617465 | 2_4:-49540842 | None:intergenic |
| TGCTGAAGATCTTGTGCGTG+AGG | 0.635228 | 2_4:+49538921 | Msa0332460:CDS |
| GCTTATGAGAGGACGTGACA+TGG | 0.640238 | 2_4:+49538795 | Msa0332460:CDS |
| TATGTAGTCCGGTACAACGA+AGG | 0.640543 | 2_4:-49540671 | None:intergenic |
| TAATATAGAAGAGTCATCAG+AGG | 0.645563 | 2_4:-49540756 | None:intergenic |
| ATGGAAGATGAGCTTATGAG+AGG | 0.648590 | 2_4:+49538784 | Msa0332460:CDS |
| GTAGATGCAAGAAGTGGCAA+TGG | 0.654729 | 2_4:-49540836 | None:intergenic |
| GATGCAAGAAGTGGCAATGG+TGG | 0.680588 | 2_4:-49540833 | None:intergenic |
| TGGCGAAGACTCCAATGATG+TGG | 0.691908 | 2_4:+49538984 | Msa0332460:CDS |
| TAATTGCCATAAGATGAAGG+AGG | 0.755735 | 2_4:+49539044 | Msa0332460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+CGG | - | chr2_4:49539424-49539443 | None:intergenic | 0.0% |
| !! | AATATTTATAAAATATTAAT+AGG | - | chr2_4:49540236-49540255 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+CGG | - | chr2_4:49539424-49539443 | None:intergenic | 0.0% |
| !! | AATATTTATAAAATATTAAT+AGG | - | chr2_4:49540236-49540255 | None:intergenic | 0.0% |
| !!! | TATTTTTATAATATCAAACA+AGG | + | chr2_4:49539239-49539258 | Msa0332460:intron | 10.0% |
| !!! | TATTTTTATAATATCAAACA+AGG | + | chr2_4:49539239-49539258 | Msa0332460:intron | 10.0% |
| !! | ATATGAAAATTAATATAGTG+AGG | - | chr2_4:49539213-49539232 | None:intergenic | 15.0% |
| !! | ATCAATCTTATAACTTAATT+TGG | - | chr2_4:49539338-49539357 | None:intergenic | 15.0% |
| !! | TTAACTTTGTAAGTATAAAA+TGG | - | chr2_4:49539961-49539980 | None:intergenic | 15.0% |
| !!! | TATAATTTTTTTTCAGTCTA+GGG | - | chr2_4:49540069-49540088 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTTTTCAGTCT+AGG | - | chr2_4:49540070-49540089 | None:intergenic | 15.0% |
| !! | TTATATTTACGTAGTATAAT+TGG | + | chr2_4:49540281-49540300 | Msa0332460:intron | 15.0% |
| !! | ATAAAATTTAATATGTATGC+AGG | + | chr2_4:49540573-49540592 | Msa0332460:intron | 15.0% |
| !! | ATATGAAAATTAATATAGTG+AGG | - | chr2_4:49539213-49539232 | None:intergenic | 15.0% |
| !! | ATCAATCTTATAACTTAATT+TGG | - | chr2_4:49539338-49539357 | None:intergenic | 15.0% |
| !! | TTAACTTTGTAAGTATAAAA+TGG | - | chr2_4:49539961-49539980 | None:intergenic | 15.0% |
| !!! | TATAATTTTTTTTCAGTCTA+GGG | - | chr2_4:49540069-49540088 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTTTTCAGTCT+AGG | - | chr2_4:49540070-49540089 | None:intergenic | 15.0% |
| !! | TTATATTTACGTAGTATAAT+TGG | + | chr2_4:49540281-49540300 | Msa0332460:intron | 15.0% |
| !! | ATAAAATTTAATATGTATGC+AGG | + | chr2_4:49540573-49540592 | Msa0332460:intron | 15.0% |
| !! | TCAAATATTAGAGAAGTTAA+AGG | + | chr2_4:49538856-49538875 | Msa0332460:CDS | 20.0% |
| !! | CAAATATTAGAGAAGTTAAA+GGG | + | chr2_4:49538857-49538876 | Msa0332460:CDS | 20.0% |
| !! | GAAAAATCTTTAACAGTTAT+AGG | - | chr2_4:49539015-49539034 | None:intergenic | 20.0% |
| !! | TAGGAATATAGTATAAAACA+TGG | - | chr2_4:49539157-49539176 | None:intergenic | 20.0% |
| !!! | GTTTAAAACTTTAGAACATT+TGG | - | chr2_4:49539275-49539294 | None:intergenic | 20.0% |
| !! | TAAACAAACATTCTAATTTG+AGG | - | chr2_4:49539743-49539762 | None:intergenic | 20.0% |
| !! | TCAAATTAGAATGTTTGTTT+AGG | + | chr2_4:49539742-49539761 | Msa0332460:intron | 20.0% |
| !! | CAAATTAGAATGTTTGTTTA+GGG | + | chr2_4:49539743-49539762 | Msa0332460:intron | 20.0% |
| !! | TTGTAAGTATAAAATGGTTT+GGG | - | chr2_4:49539955-49539974 | None:intergenic | 20.0% |
| !! | TTTGTAAGTATAAAATGGTT+TGG | - | chr2_4:49539956-49539975 | None:intergenic | 20.0% |
| !!! | ATAATTTTTTTTCAGTCTAG+GGG | - | chr2_4:49540068-49540087 | None:intergenic | 20.0% |
| !!! | GATATTTTTGTCTTCATATT+AGG | + | chr2_4:49540324-49540343 | Msa0332460:intron | 20.0% |
| !! | AGATATATACCTGAAATATT+TGG | - | chr2_4:49540441-49540460 | None:intergenic | 20.0% |
| !! | TCAAATATTAGAGAAGTTAA+AGG | + | chr2_4:49538856-49538875 | Msa0332460:CDS | 20.0% |
| !! | CAAATATTAGAGAAGTTAAA+GGG | + | chr2_4:49538857-49538876 | Msa0332460:CDS | 20.0% |
| !! | GAAAAATCTTTAACAGTTAT+AGG | - | chr2_4:49539015-49539034 | None:intergenic | 20.0% |
| !! | TAGGAATATAGTATAAAACA+TGG | - | chr2_4:49539157-49539176 | None:intergenic | 20.0% |
| !!! | GTTTAAAACTTTAGAACATT+TGG | - | chr2_4:49539275-49539294 | None:intergenic | 20.0% |
| !! | TAAACAAACATTCTAATTTG+AGG | - | chr2_4:49539743-49539762 | None:intergenic | 20.0% |
| !! | TCAAATTAGAATGTTTGTTT+AGG | + | chr2_4:49539742-49539761 | Msa0332460:intron | 20.0% |
| !! | CAAATTAGAATGTTTGTTTA+GGG | + | chr2_4:49539743-49539762 | Msa0332460:intron | 20.0% |
| !! | TTGTAAGTATAAAATGGTTT+GGG | - | chr2_4:49539955-49539974 | None:intergenic | 20.0% |
| !! | TTTGTAAGTATAAAATGGTT+TGG | - | chr2_4:49539956-49539975 | None:intergenic | 20.0% |
| !!! | ATAATTTTTTTTCAGTCTAG+GGG | - | chr2_4:49540068-49540087 | None:intergenic | 20.0% |
| !!! | GATATTTTTGTCTTCATATT+AGG | + | chr2_4:49540324-49540343 | Msa0332460:intron | 20.0% |
| !! | AGATATATACCTGAAATATT+TGG | - | chr2_4:49540441-49540460 | None:intergenic | 20.0% |
| ! | TCTTCAGCAACAATATTTAA+GGG | - | chr2_4:49538910-49538929 | None:intergenic | 25.0% |
| ! | ATCTTCAGCAACAATATTTA+AGG | - | chr2_4:49538911-49538930 | None:intergenic | 25.0% |
| ! | GAAACAAGTCAAATACTTAT+AGG | - | chr2_4:49539176-49539195 | None:intergenic | 25.0% |
| !!! | AAGTATTTGACTTGTTTCAA+AGG | + | chr2_4:49539178-49539197 | Msa0332460:intron | 25.0% |
| !! | TTTTACTTCCATGTTTGTTT+AGG | + | chr2_4:49539681-49539700 | Msa0332460:intron | 25.0% |
| ! | TTTACTTCCATGTTTGTTTA+GGG | + | chr2_4:49539682-49539701 | Msa0332460:intron | 25.0% |
| ! | AAAATAAGTCATGCAATCAT+GGG | + | chr2_4:49539819-49539838 | Msa0332460:intron | 25.0% |
| ! | TTGAGATTTAATTAGAGCTA+TGG | - | chr2_4:49539994-49540013 | None:intergenic | 25.0% |
| !!! | TCGTTAACTTGTCTTTTTAA+GGG | - | chr2_4:49540105-49540124 | None:intergenic | 25.0% |
| !!! | TTCGTTAACTTGTCTTTTTA+AGG | - | chr2_4:49540106-49540125 | None:intergenic | 25.0% |
| ! | ATGATGATCATATATATGTC+TGG | - | chr2_4:49540190-49540209 | None:intergenic | 25.0% |
| ! | ATATGATCATCATTACTCAA+TGG | + | chr2_4:49540197-49540216 | Msa0332460:intron | 25.0% |
| ! | ATAACCATCATCAATCAATT+TGG | - | chr2_4:49540381-49540400 | None:intergenic | 25.0% |
| ! | ATTTGAATGTTACAGATTGA+TGG | - | chr2_4:49540538-49540557 | None:intergenic | 25.0% |
| ! | TTACCATTCAGACTTAAATT+TGG | + | chr2_4:49540721-49540740 | Msa0332460:CDS | 25.0% |
| ! | ATTCCAAATTTAAGTCTGAA+TGG | - | chr2_4:49540727-49540746 | None:intergenic | 25.0% |
| ! | TCTTCAGCAACAATATTTAA+GGG | - | chr2_4:49538910-49538929 | None:intergenic | 25.0% |
| ! | ATCTTCAGCAACAATATTTA+AGG | - | chr2_4:49538911-49538930 | None:intergenic | 25.0% |
| ! | GAAACAAGTCAAATACTTAT+AGG | - | chr2_4:49539176-49539195 | None:intergenic | 25.0% |
| !!! | AAGTATTTGACTTGTTTCAA+AGG | + | chr2_4:49539178-49539197 | Msa0332460:intron | 25.0% |
| !! | TTTTACTTCCATGTTTGTTT+AGG | + | chr2_4:49539681-49539700 | Msa0332460:intron | 25.0% |
| ! | TTTACTTCCATGTTTGTTTA+GGG | + | chr2_4:49539682-49539701 | Msa0332460:intron | 25.0% |
| ! | AAAATAAGTCATGCAATCAT+GGG | + | chr2_4:49539819-49539838 | Msa0332460:intron | 25.0% |
| ! | TTGAGATTTAATTAGAGCTA+TGG | - | chr2_4:49539994-49540013 | None:intergenic | 25.0% |
| !!! | TCGTTAACTTGTCTTTTTAA+GGG | - | chr2_4:49540105-49540124 | None:intergenic | 25.0% |
| !!! | TTCGTTAACTTGTCTTTTTA+AGG | - | chr2_4:49540106-49540125 | None:intergenic | 25.0% |
| ! | ATGATGATCATATATATGTC+TGG | - | chr2_4:49540190-49540209 | None:intergenic | 25.0% |
| ! | ATATGATCATCATTACTCAA+TGG | + | chr2_4:49540197-49540216 | Msa0332460:intron | 25.0% |
| ! | ATAACCATCATCAATCAATT+TGG | - | chr2_4:49540381-49540400 | None:intergenic | 25.0% |
| ! | ATTTGAATGTTACAGATTGA+TGG | - | chr2_4:49540538-49540557 | None:intergenic | 25.0% |
| ! | TTACCATTCAGACTTAAATT+TGG | + | chr2_4:49540721-49540740 | Msa0332460:CDS | 25.0% |
| ! | ATTCCAAATTTAAGTCTGAA+TGG | - | chr2_4:49540727-49540746 | None:intergenic | 25.0% |
| ! | CTTTGGTTTCCAACAAATTA+TGG | + | chr2_4:49538751-49538770 | Msa0332460:CDS | 30.0% |
| TCCAACAAATTATGGCAAAA+AGG | + | chr2_4:49538759-49538778 | Msa0332460:CDS | 30.0% | |
| AAATTATGGCAAAAAGGCAA+TGG | + | chr2_4:49538765-49538784 | Msa0332460:CDS | 30.0% | |
| AACTAATTGCCATAAGATGA+AGG | + | chr2_4:49539041-49539060 | Msa0332460:CDS | 30.0% | |
| ACAAAAACCCTAAACAAACA+TGG | - | chr2_4:49539692-49539711 | None:intergenic | 30.0% | |
| ACAAACATTCTAATTTGAGG+TGG | - | chr2_4:49539740-49539759 | None:intergenic | 30.0% | |
| GAAAATAAGTCATGCAATCA+TGG | + | chr2_4:49539818-49539837 | Msa0332460:intron | 30.0% | |
| TCAACTTTCAATCTCAAGTT+TGG | + | chr2_4:49539906-49539925 | Msa0332460:intron | 30.0% | |
| TTGGATAATTCATGTGAGAT+TGG | + | chr2_4:49539925-49539944 | Msa0332460:intron | 30.0% | |
| TGGATAATTCATGTGAGATT+GGG | + | chr2_4:49539926-49539945 | Msa0332460:intron | 30.0% | |
| ATGATCATATATATGTCTGG+AGG | - | chr2_4:49540187-49540206 | None:intergenic | 30.0% | |
| !! | TGATTGATGATGGTTATACA+TGG | + | chr2_4:49540384-49540403 | Msa0332460:CDS | 30.0% |
| TCACAAATGCCAAATATTTC+AGG | + | chr2_4:49540429-49540448 | Msa0332460:CDS | 30.0% | |
| TAATATAGAAGAGTCATCAG+AGG | - | chr2_4:49540759-49540778 | None:intergenic | 30.0% | |
| AGTAATCAAGAATATCCGTT+TGG | + | chr2_4:49540803-49540822 | Msa0332460:CDS | 30.0% | |
| AAACATCAAAATCGCATAAC+TGG | - | chr2_4:49540934-49540953 | None:intergenic | 30.0% | |
| ! | CTTTGGTTTCCAACAAATTA+TGG | + | chr2_4:49538751-49538770 | Msa0332460:CDS | 30.0% |
| TCCAACAAATTATGGCAAAA+AGG | + | chr2_4:49538759-49538778 | Msa0332460:CDS | 30.0% | |
| AAATTATGGCAAAAAGGCAA+TGG | + | chr2_4:49538765-49538784 | Msa0332460:CDS | 30.0% | |
| AACTAATTGCCATAAGATGA+AGG | + | chr2_4:49539041-49539060 | Msa0332460:CDS | 30.0% | |
| ACAAAAACCCTAAACAAACA+TGG | - | chr2_4:49539692-49539711 | None:intergenic | 30.0% | |
| ACAAACATTCTAATTTGAGG+TGG | - | chr2_4:49539740-49539759 | None:intergenic | 30.0% | |
| GAAAATAAGTCATGCAATCA+TGG | + | chr2_4:49539818-49539837 | Msa0332460:intron | 30.0% | |
| TCAACTTTCAATCTCAAGTT+TGG | + | chr2_4:49539906-49539925 | Msa0332460:intron | 30.0% | |
| TTGGATAATTCATGTGAGAT+TGG | + | chr2_4:49539925-49539944 | Msa0332460:intron | 30.0% | |
| TGGATAATTCATGTGAGATT+GGG | + | chr2_4:49539926-49539945 | Msa0332460:intron | 30.0% | |
| ATGATCATATATATGTCTGG+AGG | - | chr2_4:49540187-49540206 | None:intergenic | 30.0% | |
| !! | TGATTGATGATGGTTATACA+TGG | + | chr2_4:49540384-49540403 | Msa0332460:CDS | 30.0% |
| TCACAAATGCCAAATATTTC+AGG | + | chr2_4:49540429-49540448 | Msa0332460:CDS | 30.0% | |
| TAATATAGAAGAGTCATCAG+AGG | - | chr2_4:49540759-49540778 | None:intergenic | 30.0% | |
| AGTAATCAAGAATATCCGTT+TGG | + | chr2_4:49540803-49540822 | Msa0332460:CDS | 30.0% | |
| AAACATCAAAATCGCATAAC+TGG | - | chr2_4:49540934-49540953 | None:intergenic | 30.0% | |
| !! | GCCTTTTTGCCATAATTTGT+TGG | - | chr2_4:49538763-49538782 | None:intergenic | 35.0% |
| !!! | ACACTTTTGCTGTTGAACAA+TGG | + | chr2_4:49538964-49538983 | Msa0332460:CDS | 35.0% |
| TAATTGCCATAAGATGAAGG+AGG | + | chr2_4:49539044-49539063 | Msa0332460:CDS | 35.0% | |
| AAGAAGGAAGAAAAACCAGT+TGG | - | chr2_4:49539644-49539663 | None:intergenic | 35.0% | |
| ! | GGTTTTTCTTCCTTCTTTGT+CGG | + | chr2_4:49539647-49539666 | Msa0332460:intron | 35.0% |
| ! | GTTTTTCTTCCTTCTTTGTC+GGG | + | chr2_4:49539648-49539667 | Msa0332460:intron | 35.0% |
| !!! | TTTTTTTTCAGTCTAGGGGA+GGG | - | chr2_4:49540064-49540083 | None:intergenic | 35.0% |
| !!! | ATTTTTTTTCAGTCTAGGGG+AGG | - | chr2_4:49540065-49540084 | None:intergenic | 35.0% |
| !! | TTTTAATTCACAGCACAGCT+AGG | + | chr2_4:49540161-49540180 | Msa0332460:intron | 35.0% |
| ACCATCATCAATCAATTTGG+AGG | - | chr2_4:49540378-49540397 | None:intergenic | 35.0% | |
| GGTTATACATGGAGAAAGTA+CGG | + | chr2_4:49540395-49540414 | Msa0332460:CDS | 35.0% | |
| TTGTACCGGACTACATATTA+TGG | + | chr2_4:49540677-49540696 | Msa0332460:CDS | 35.0% | |
| GATGACCATAATATGTAGTC+CGG | - | chr2_4:49540685-49540704 | None:intergenic | 35.0% | |
| TCATGATGTATCTCTTCCTT+AGG | - | chr2_4:49540872-49540891 | None:intergenic | 35.0% | |
| TCAAAACCAATTGTTCTCAC+CGG | + | chr2_4:49540901-49540920 | Msa0332460:CDS | 35.0% | |
| !! | GCCTTTTTGCCATAATTTGT+TGG | - | chr2_4:49538763-49538782 | None:intergenic | 35.0% |
| !!! | ACACTTTTGCTGTTGAACAA+TGG | + | chr2_4:49538964-49538983 | Msa0332460:CDS | 35.0% |
| TAATTGCCATAAGATGAAGG+AGG | + | chr2_4:49539044-49539063 | Msa0332460:CDS | 35.0% | |
| AAGAAGGAAGAAAAACCAGT+TGG | - | chr2_4:49539644-49539663 | None:intergenic | 35.0% | |
| ! | GGTTTTTCTTCCTTCTTTGT+CGG | + | chr2_4:49539647-49539666 | Msa0332460:intron | 35.0% |
| ! | GTTTTTCTTCCTTCTTTGTC+GGG | + | chr2_4:49539648-49539667 | Msa0332460:intron | 35.0% |
| !!! | TTTTTTTTCAGTCTAGGGGA+GGG | - | chr2_4:49540064-49540083 | None:intergenic | 35.0% |
| !!! | ATTTTTTTTCAGTCTAGGGG+AGG | - | chr2_4:49540065-49540084 | None:intergenic | 35.0% |
| !! | TTTTAATTCACAGCACAGCT+AGG | + | chr2_4:49540161-49540180 | Msa0332460:intron | 35.0% |
| ACCATCATCAATCAATTTGG+AGG | - | chr2_4:49540378-49540397 | None:intergenic | 35.0% | |
| GGTTATACATGGAGAAAGTA+CGG | + | chr2_4:49540395-49540414 | Msa0332460:CDS | 35.0% | |
| TTGTACCGGACTACATATTA+TGG | + | chr2_4:49540677-49540696 | Msa0332460:CDS | 35.0% | |
| GATGACCATAATATGTAGTC+CGG | - | chr2_4:49540685-49540704 | None:intergenic | 35.0% | |
| TCATGATGTATCTCTTCCTT+AGG | - | chr2_4:49540872-49540891 | None:intergenic | 35.0% | |
| TCAAAACCAATTGTTCTCAC+CGG | + | chr2_4:49540901-49540920 | Msa0332460:CDS | 35.0% | |
| ATGGAAGATGAGCTTATGAG+AGG | + | chr2_4:49538784-49538803 | Msa0332460:CDS | 40.0% | |
| TATAGGAACAGCCACATCAT+TGG | - | chr2_4:49538998-49539017 | None:intergenic | 40.0% | |
| AATCCTCCTCCTTCATCTTA+TGG | - | chr2_4:49539053-49539072 | None:intergenic | 40.0% | |
| TAAGATGAAGGAGGAGGATT+TGG | + | chr2_4:49539053-49539072 | Msa0332460:CDS | 40.0% | |
| AAGATGAAGGAGGAGGATTT+GGG | + | chr2_4:49539054-49539073 | Msa0332460:CDS | 40.0% | |
| !!! | GTTCGACACTTTCGAGTTTT+TGG | - | chr2_4:49539112-49539131 | None:intergenic | 40.0% |
| AAGGAAGAAAAACCAGTTGG+CGG | - | chr2_4:49539641-49539660 | None:intergenic | 40.0% | |
| GACAATTTACCCGACAAAGA+AGG | - | chr2_4:49539660-49539679 | None:intergenic | 40.0% | |
| !! | GTGGTTTTTGTTTCTCTCTC+TGG | - | chr2_4:49539721-49539740 | None:intergenic | 40.0% |
| !!! | TTTTTTTCAGTCTAGGGGAG+GGG | - | chr2_4:49540063-49540082 | None:intergenic | 40.0% |
| GCCTCCAAATTGATTGATGA+TGG | + | chr2_4:49540374-49540393 | Msa0332460:CDS | 40.0% | |
| ATGTATGCAGGAGCTACTAT+AGG | + | chr2_4:49540585-49540604 | Msa0332460:intron | 40.0% | |
| AAAAGAACCCTTCGTTGTAC+CGG | + | chr2_4:49540663-49540682 | Msa0332460:CDS | 40.0% | |
| AGAGTCATCAGAGGAGAAAA+TGG | - | chr2_4:49540750-49540769 | None:intergenic | 40.0% | |
| CCACTTCTTGCATCTACAAA+CGG | + | chr2_4:49540842-49540861 | Msa0332460:CDS | 40.0% | |
| ATCTACAAACGGAGATCCTA+AGG | + | chr2_4:49540853-49540872 | Msa0332460:CDS | 40.0% | |
| !!! | GGTGAGAACAATTGGTTTTG+AGG | - | chr2_4:49540902-49540921 | None:intergenic | 40.0% |
| ATGGAAGATGAGCTTATGAG+AGG | + | chr2_4:49538784-49538803 | Msa0332460:CDS | 40.0% | |
| TATAGGAACAGCCACATCAT+TGG | - | chr2_4:49538998-49539017 | None:intergenic | 40.0% | |
| AATCCTCCTCCTTCATCTTA+TGG | - | chr2_4:49539053-49539072 | None:intergenic | 40.0% | |
| TAAGATGAAGGAGGAGGATT+TGG | + | chr2_4:49539053-49539072 | Msa0332460:CDS | 40.0% | |
| AAGATGAAGGAGGAGGATTT+GGG | + | chr2_4:49539054-49539073 | Msa0332460:CDS | 40.0% | |
| !!! | GTTCGACACTTTCGAGTTTT+TGG | - | chr2_4:49539112-49539131 | None:intergenic | 40.0% |
| AAGGAAGAAAAACCAGTTGG+CGG | - | chr2_4:49539641-49539660 | None:intergenic | 40.0% | |
| GACAATTTACCCGACAAAGA+AGG | - | chr2_4:49539660-49539679 | None:intergenic | 40.0% | |
| !! | GTGGTTTTTGTTTCTCTCTC+TGG | - | chr2_4:49539721-49539740 | None:intergenic | 40.0% |
| !!! | TTTTTTTCAGTCTAGGGGAG+GGG | - | chr2_4:49540063-49540082 | None:intergenic | 40.0% |
| GCCTCCAAATTGATTGATGA+TGG | + | chr2_4:49540374-49540393 | Msa0332460:CDS | 40.0% | |
| ATGTATGCAGGAGCTACTAT+AGG | + | chr2_4:49540585-49540604 | Msa0332460:intron | 40.0% | |
| AAAAGAACCCTTCGTTGTAC+CGG | + | chr2_4:49540663-49540682 | Msa0332460:CDS | 40.0% | |
| AGAGTCATCAGAGGAGAAAA+TGG | - | chr2_4:49540750-49540769 | None:intergenic | 40.0% | |
| CCACTTCTTGCATCTACAAA+CGG | + | chr2_4:49540842-49540861 | Msa0332460:CDS | 40.0% | |
| ATCTACAAACGGAGATCCTA+AGG | + | chr2_4:49540853-49540872 | Msa0332460:CDS | 40.0% | |
| !!! | GGTGAGAACAATTGGTTTTG+AGG | - | chr2_4:49540902-49540921 | None:intergenic | 40.0% |
| TTGCCATAAGATGAAGGAGG+AGG | + | chr2_4:49539047-49539066 | Msa0332460:CDS | 45.0% | |
| GAGGAGAGGGAGAAAAATGA+AGG | - | chr2_4:49539619-49539638 | None:intergenic | 45.0% | |
| !!! | TTTTTTCAGTCTAGGGGAGG+GGG | - | chr2_4:49540062-49540081 | None:intergenic | 45.0% |
| TTAGGTCAAGTGCACCAACT+TGG | + | chr2_4:49540342-49540361 | Msa0332460:intron | 45.0% | |
| TAGGTCAAGTGCACCAACTT+GGG | + | chr2_4:49540343-49540362 | Msa0332460:intron | 45.0% | |
| TGCACCAACTTGGGAAAAGA+CGG | + | chr2_4:49540352-49540371 | Msa0332460:CDS | 45.0% | |
| ATGTAGTCCGGTACAACGAA+GGG | - | chr2_4:49540673-49540692 | None:intergenic | 45.0% | |
| TATGTAGTCCGGTACAACGA+AGG | - | chr2_4:49540674-49540693 | None:intergenic | 45.0% | |
| ! | AATGGTGGTGACTGTCCAAA+CGG | - | chr2_4:49540821-49540840 | None:intergenic | 45.0% |
| GTAGATGCAAGAAGTGGCAA+TGG | - | chr2_4:49540839-49540858 | None:intergenic | 45.0% | |
| CCGTTTGTAGATGCAAGAAG+TGG | - | chr2_4:49540845-49540864 | None:intergenic | 45.0% | |
| GATTCTCCGGTGAGAACAAT+TGG | - | chr2_4:49540910-49540929 | None:intergenic | 45.0% | |
| TCGCATAACTGGAGATTCTC+CGG | - | chr2_4:49540923-49540942 | None:intergenic | 45.0% | |
| TTGCCATAAGATGAAGGAGG+AGG | + | chr2_4:49539047-49539066 | Msa0332460:CDS | 45.0% | |
| GAGGAGAGGGAGAAAAATGA+AGG | - | chr2_4:49539619-49539638 | None:intergenic | 45.0% | |
| !!! | TTTTTTCAGTCTAGGGGAGG+GGG | - | chr2_4:49540062-49540081 | None:intergenic | 45.0% |
| TTAGGTCAAGTGCACCAACT+TGG | + | chr2_4:49540342-49540361 | Msa0332460:intron | 45.0% | |
| TAGGTCAAGTGCACCAACTT+GGG | + | chr2_4:49540343-49540362 | Msa0332460:intron | 45.0% | |
| TGCACCAACTTGGGAAAAGA+CGG | + | chr2_4:49540352-49540371 | Msa0332460:CDS | 45.0% | |
| ATGTAGTCCGGTACAACGAA+GGG | - | chr2_4:49540673-49540692 | None:intergenic | 45.0% | |
| TATGTAGTCCGGTACAACGA+AGG | - | chr2_4:49540674-49540693 | None:intergenic | 45.0% | |
| ! | AATGGTGGTGACTGTCCAAA+CGG | - | chr2_4:49540821-49540840 | None:intergenic | 45.0% |
| GTAGATGCAAGAAGTGGCAA+TGG | - | chr2_4:49540839-49540858 | None:intergenic | 45.0% | |
| CCGTTTGTAGATGCAAGAAG+TGG | - | chr2_4:49540845-49540864 | None:intergenic | 45.0% | |
| GATTCTCCGGTGAGAACAAT+TGG | - | chr2_4:49540910-49540929 | None:intergenic | 45.0% | |
| TCGCATAACTGGAGATTCTC+CGG | - | chr2_4:49540923-49540942 | None:intergenic | 45.0% | |
| !!! | GAATTTATTTAATATTTTAT+AGG | - | chr2_4:49540024-49540043 | None:intergenic | 5.0% |
| !!! | GAATTTATTTAATATTTTAT+AGG | - | chr2_4:49540024-49540043 | None:intergenic | 5.0% |
| GCTTATGAGAGGACGTGACA+TGG | + | chr2_4:49538795-49538814 | Msa0332460:CDS | 50.0% | |
| TGCTGAAGATCTTGTGCGTG+AGG | + | chr2_4:49538921-49538940 | Msa0332460:CDS | 50.0% | |
| TGGCGAAGACTCCAATGATG+TGG | + | chr2_4:49538984-49539003 | Msa0332460:CDS | 50.0% | |
| ATGAAGGAGGAGGATTTGGG+TGG | + | chr2_4:49539057-49539076 | Msa0332460:CDS | 50.0% | |
| GAAGAAAAACCAGTTGGCGG+AGG | - | chr2_4:49539638-49539657 | None:intergenic | 50.0% | |
| GATGCAAGAAGTGGCAATGG+TGG | - | chr2_4:49540836-49540855 | None:intergenic | 50.0% | |
| GCTTATGAGAGGACGTGACA+TGG | + | chr2_4:49538795-49538814 | Msa0332460:CDS | 50.0% | |
| TGCTGAAGATCTTGTGCGTG+AGG | + | chr2_4:49538921-49538940 | Msa0332460:CDS | 50.0% | |
| TGGCGAAGACTCCAATGATG+TGG | + | chr2_4:49538984-49539003 | Msa0332460:CDS | 50.0% | |
| ATGAAGGAGGAGGATTTGGG+TGG | + | chr2_4:49539057-49539076 | Msa0332460:CDS | 50.0% | |
| GAAGAAAAACCAGTTGGCGG+AGG | - | chr2_4:49539638-49539657 | None:intergenic | 50.0% | |
| GATGCAAGAAGTGGCAATGG+TGG | - | chr2_4:49540836-49540855 | None:intergenic | 50.0% | |
| AAACCAGTTGGCGGAGGAGA+GGG | - | chr2_4:49539632-49539651 | None:intergenic | 55.0% | |
| AAAACCAGTTGGCGGAGGAG+AGG | - | chr2_4:49539633-49539652 | None:intergenic | 55.0% | |
| ! | GAGGCCGTCTTTTCCCAAGT+TGG | - | chr2_4:49540359-49540378 | None:intergenic | 55.0% |
| AAACCAGTTGGCGGAGGAGA+GGG | - | chr2_4:49539632-49539651 | None:intergenic | 55.0% | |
| AAAACCAGTTGGCGGAGGAG+AGG | - | chr2_4:49539633-49539652 | None:intergenic | 55.0% | |
| ! | GAGGCCGTCTTTTCCCAAGT+TGG | - | chr2_4:49540359-49540378 | None:intergenic | 55.0% |
| CAGTCTAGGGGAGGGGGATT+TGG | - | chr2_4:49540056-49540075 | None:intergenic | 60.0% | |
| CAGTCTAGGGGAGGGGGATT+TGG | - | chr2_4:49540056-49540075 | None:intergenic | 60.0% | |
| TCTCCCTCTCCTCCGCCAAC+TGG | + | chr2_4:49539626-49539645 | Msa0332460:intron | 65.0% | |
| TCTCCCTCTCCTCCGCCAAC+TGG | + | chr2_4:49539626-49539645 | Msa0332460:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 49538739 | 49541006 | 49538739 | ID=Msa0332460;Name=Msa0332460 |
| chr2_4 | mRNA | 49538739 | 49541006 | 49538739 | ID=Msa0332460-mRNA-1;Parent=Msa0332460;Name=Msa0332460-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|1|1|3|0|305 |
| chr2_4 | exon | 49538739 | 49539139 | 49538739 | ID=Msa0332460-mRNA-1:exon:14802;Parent=Msa0332460-mRNA-1 |
| chr2_4 | exon | 49540346 | 49540450 | 49540346 | ID=Msa0332460-mRNA-1:exon:14803;Parent=Msa0332460-mRNA-1 |
| chr2_4 | exon | 49540595 | 49541006 | 49540595 | ID=Msa0332460-mRNA-1:exon:14804;Parent=Msa0332460-mRNA-1 |
| chr2_4 | CDS | 49538739 | 49539139 | 49538739 | ID=Msa0332460-mRNA-1:cds;Parent=Msa0332460-mRNA-1 |
| chr2_4 | CDS | 49540346 | 49540450 | 49540346 | ID=Msa0332460-mRNA-1:cds;Parent=Msa0332460-mRNA-1 |
| chr2_4 | CDS | 49540595 | 49541006 | 49540595 | ID=Msa0332460-mRNA-1:cds;Parent=Msa0332460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
