Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332680 | XP_003596349.2 | 91.905 | 210 | 17 | 0 | 1 | 210 | 1 | 210 | 2.23e-137 | 393 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332680 | sp|P09444|LEA34_GOSHI | 54.545 | 121 | 47 | 1 | 1 | 113 | 1 | 121 | 2.31e-39 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0332680 | Msa0332690 | 0.854582 | 1.118497e-61 | -8.615850e-47 |
| Msa0332680 | Msa0918740 | 0.819843 | 9.388095e-53 | -8.615850e-47 |
| Msa0332680 | Msa1026370 | 0.898457 | 5.210365e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332680 | MtrunA17_Chr2g0315671 | 91.905 | 210 | 17 | 0 | 1 | 210 | 71 | 280 | 4.63e-141 | 395 |
| Msa0332680 | MtrunA17_Chr2g0315661 | 80.800 | 125 | 24 | 0 | 1 | 125 | 1 | 125 | 4.54e-68 | 204 |
| Msa0332680 | MtrunA17_Chr1g0205331 | 60.870 | 115 | 43 | 1 | 1 | 113 | 32 | 146 | 7.63e-42 | 143 |
| Msa0332680 | MtrunA17_Chr1g0185421 | 57.983 | 119 | 44 | 1 | 1 | 113 | 1 | 119 | 1.14e-41 | 142 |
| Msa0332680 | MtrunA17_Chr3g0090511 | 40.426 | 141 | 74 | 4 | 1 | 133 | 68 | 206 | 8.55e-19 | 82.8 |
| Msa0332680 | MtrunA17_Chr1g0191151 | 55.814 | 86 | 37 | 1 | 1 | 86 | 1 | 85 | 1.09e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332680 | AT3G22490.1 | 54.386 | 114 | 50 | 2 | 1 | 113 | 1 | 113 | 3.87e-34 | 122 |
| Msa0332680 | AT3G22500.1 | 53.982 | 113 | 50 | 2 | 1 | 113 | 1 | 111 | 9.88e-33 | 119 |
Find 53 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGACCAAGCATTCTCATTT+TGG | 0.172102 | 2_4:+49818990 | None:intergenic |
| TCTTCTGTTACTCCCACTTT+AGG | 0.261679 | 2_4:+49819070 | None:intergenic |
| GGTATACTATTTATAACTTC+AGG | 0.315043 | 2_4:+49818836 | None:intergenic |
| GCCATGAATCCTCGGTTTGC+TGG | 0.341292 | 2_4:-49819016 | Msa0332680:CDS |
| GTTACGTACCATTGAATCAT+TGG | 0.350289 | 2_4:+49818970 | None:intergenic |
| GAGCAAGAACCAATAAAATA+TGG | 0.361464 | 2_4:-49820486 | Msa0332680:CDS |
| TCTGCAGAATATAGAACATT+TGG | 0.382040 | 2_4:-49820393 | Msa0332680:CDS |
| GCTTGAGCTGAGGCAGGATT+AGG | 0.397350 | 2_4:+49819094 | None:intergenic |
| AGATAGGGCAAAAGGGAATA+TGG | 0.397379 | 2_4:-49819146 | Msa0332680:CDS |
| AGTTTGTGGAAGATGAAGAT+AGG | 0.402406 | 2_4:-49819162 | Msa0332680:CDS |
| GGTTCTTGCTCAGGTCTCCT+TGG | 0.408600 | 2_4:+49820498 | None:intergenic |
| CCCAGCAAACCGAGGATTCA+TGG | 0.416450 | 2_4:+49819015 | None:intergenic |
| GAATATGGCTGGCAATGAAT+TGG | 0.423944 | 2_4:-49819131 | Msa0332680:CDS |
| TTACTAATGGAGCAGGTCCT+AGG | 0.432968 | 2_4:-49819187 | Msa0332680:intron |
| CACTGAGACTCTTGGTGGAC+AGG | 0.437669 | 2_4:-49820217 | Msa0332680:intron |
| AGCAGCATCTCTTGGTGCAA+TGG | 0.441783 | 2_4:+49820425 | None:intergenic |
| GAAGATGAAGATAGGGCAAA+AGG | 0.452793 | 2_4:-49819154 | Msa0332680:CDS |
| GCAGCATCTCTTGGTGCAAT+GGG | 0.454564 | 2_4:+49820426 | None:intergenic |
| GTATACTATTTATAACTTCA+GGG | 0.456065 | 2_4:+49818837 | None:intergenic |
| GTTTCAGAAACTTATGATGC+TGG | 0.460976 | 2_4:-49820252 | Msa0332680:CDS |
| TAACAATATCATCATGAGTC+AGG | 0.484085 | 2_4:-49820526 | None:intergenic |
| TTAGGAGCTTGAGCTGAGGC+AGG | 0.485029 | 2_4:+49819088 | None:intergenic |
| ACAAACATTGCAAGAAATGA+AGG | 0.486122 | 2_4:-49820282 | Msa0332680:CDS |
| GCAGAAGTCATGAGAGAAGC+AGG | 0.487627 | 2_4:+49820351 | None:intergenic |
| GGTGATGTGTTCAATGTGTC+TGG | 0.489522 | 2_4:-49820465 | Msa0332680:CDS |
| CCATGAATCCTCGGTTTGCT+GGG | 0.498012 | 2_4:-49819015 | Msa0332680:CDS |
| TGCTTGGTCCAATGATTCAA+TGG | 0.506903 | 2_4:-49818978 | Msa0332680:intron |
| CATCTTCCACAAACTTCCCT+AGG | 0.508553 | 2_4:+49819170 | None:intergenic |
| AAATAGTATACCTGGTGGCA+TGG | 0.509146 | 2_4:-49818825 | Msa0332680:CDS |
| ATCTGCAGTCGCAGTTGCCA+TGG | 0.510705 | 2_4:+49818796 | None:intergenic |
| GGAACCAAAATGAGAATGCT+TGG | 0.511108 | 2_4:-49818994 | Msa0332680:CDS |
| TGGTGGCATGGGAGCATCCA+TGG | 0.522256 | 2_4:-49818813 | Msa0332680:CDS |
| CGTGTCATCACTGAGACTCT+TGG | 0.522643 | 2_4:-49820225 | Msa0332680:CDS |
| TTTATAAGTAACAAAGGTGG+TGG | 0.531247 | 2_4:-49819040 | Msa0332680:CDS |
| TGCATGGTAGCAGCATCTCT+TGG | 0.540923 | 2_4:+49820417 | None:intergenic |
| AATAGTATACCTGGTGGCAT+GGG | 0.546872 | 2_4:-49818824 | Msa0332680:CDS |
| TTTGGCCAGACTAGAAAAGA+TGG | 0.550086 | 2_4:-49820375 | Msa0332680:CDS |
| GTCATCACTGAGACTCTTGG+TGG | 0.550556 | 2_4:-49820222 | Msa0332680:CDS |
| GCAGGTCCTAGGGAAGTTTG+TGG | 0.552402 | 2_4:-49819176 | Msa0332680:intron |
| AAGATGAAGATAGGGCAAAA+GGG | 0.554677 | 2_4:-49819153 | Msa0332680:CDS |
| TACTAATGGAGCAGGTCCTA+GGG | 0.558673 | 2_4:-49819186 | Msa0332680:intron |
| TCTATATTCTGCAGATTGCA+TGG | 0.561955 | 2_4:+49820401 | None:intergenic |
| GTTTGTGGAAGATGAAGATA+GGG | 0.568034 | 2_4:-49819161 | Msa0332680:CDS |
| AGGGCAAAAGGGAATATGGC+TGG | 0.571266 | 2_4:-49819142 | Msa0332680:CDS |
| ATGGATGCTCCCATGCCACC+AGG | 0.573081 | 2_4:+49818815 | None:intergenic |
| GTGGTGGTGCCATGAATCCT+CGG | 0.577832 | 2_4:-49819024 | Msa0332680:CDS |
| CTCAGCTCAAGCTCCTAAAG+TGG | 0.578084 | 2_4:-49819083 | Msa0332680:CDS |
| CACTTTAGGAGCTTGAGCTG+AGG | 0.596456 | 2_4:+49819084 | None:intergenic |
| GGCAATGAATTGGAAGATGA+AGG | 0.602410 | 2_4:-49819121 | Msa0332680:CDS |
| GAAGTTATAAATAGTATACC+TGG | 0.606287 | 2_4:-49818833 | Msa0332680:CDS |
| TCAGCTCAAGCTCCTAAAGT+GGG | 0.636472 | 2_4:-49819082 | Msa0332680:CDS |
| TCATGAGTCAGGAACAACCA+AGG | 0.693683 | 2_4:-49820515 | Msa0332680:CDS |
| GTTATAAATAGTATACCTGG+TGG | 0.712263 | 2_4:-49818830 | Msa0332680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAGAAAAGATTTTTTTT+AGG | - | chr2_4:49819503-49819522 | Msa0332680:intron | 10.0% |
| !!! | ACTATAGTTAATTTTTTTTT+TGG | - | chr2_4:49819617-49819636 | Msa0332680:intron | 10.0% |
| !!! | AACAATTTTATAAAATCTAA+TGG | + | chr2_4:49819847-49819866 | None:intergenic | 10.0% |
| !!! | ATTCCTATATATTTTTTATA+AGG | + | chr2_4:49819880-49819899 | None:intergenic | 10.0% |
| !! | TTATAAAAAATATATAGGAA+TGG | - | chr2_4:49819879-49819898 | Msa0332680:intron | 10.0% |
| !!! | TATAAGAAAAGATTTTTTTT+AGG | - | chr2_4:49819503-49819522 | Msa0332680:intron | 10.0% |
| !!! | ACTATAGTTAATTTTTTTTT+TGG | - | chr2_4:49819617-49819636 | Msa0332680:intron | 10.0% |
| !!! | AACAATTTTATAAAATCTAA+TGG | + | chr2_4:49819847-49819866 | None:intergenic | 10.0% |
| !!! | ATTCCTATATATTTTTTATA+AGG | + | chr2_4:49819880-49819899 | None:intergenic | 10.0% |
| !! | TTATAAAAAATATATAGGAA+TGG | - | chr2_4:49819879-49819898 | Msa0332680:intron | 10.0% |
| !!! | TTTTTTAGTTAATTATGACT+TGG | - | chr2_4:49819325-49819344 | Msa0332680:intron | 15.0% |
| !!! | TTTTTAGTTAATTATGACTT+GGG | - | chr2_4:49819326-49819345 | Msa0332680:intron | 15.0% |
| !!! | AAGACAAATTCTAAAAAATT+TGG | - | chr2_4:49819749-49819768 | Msa0332680:intron | 15.0% |
| !!! | AGACAAATTCTAAAAAATTT+GGG | - | chr2_4:49819750-49819769 | Msa0332680:intron | 15.0% |
| !! | TAACCAATTAAAATAGTATT+TGG | + | chr2_4:49819923-49819942 | None:intergenic | 15.0% |
| !!! | ATTGATTTTATAAGTAACAA+AGG | - | chr2_4:49820242-49820261 | Msa0332680:CDS | 15.0% |
| !!! | TTTTTTAGTTAATTATGACT+TGG | - | chr2_4:49819325-49819344 | Msa0332680:intron | 15.0% |
| !!! | TTTTTAGTTAATTATGACTT+GGG | - | chr2_4:49819326-49819345 | Msa0332680:intron | 15.0% |
| !!! | AAGACAAATTCTAAAAAATT+TGG | - | chr2_4:49819749-49819768 | Msa0332680:intron | 15.0% |
| !!! | AGACAAATTCTAAAAAATTT+GGG | - | chr2_4:49819750-49819769 | Msa0332680:intron | 15.0% |
| !! | TAACCAATTAAAATAGTATT+TGG | + | chr2_4:49819923-49819942 | None:intergenic | 15.0% |
| !!! | ATTGATTTTATAAGTAACAA+AGG | - | chr2_4:49820242-49820261 | Msa0332680:CDS | 15.0% |
| !!! | ATTTCGTATTAAAGCTTTAA+TGG | - | chr2_4:49819444-49819463 | Msa0332680:intron | 20.0% |
| !!! | TCTTTTCTTATATATAAGAC+CGG | + | chr2_4:49819495-49819514 | None:intergenic | 20.0% |
| !! | CTGCCTTATAAAAAATATAT+AGG | - | chr2_4:49819874-49819893 | Msa0332680:intron | 20.0% |
| !! | TACATTTAAGCTTATTGAAA+AGG | - | chr2_4:49819999-49820018 | Msa0332680:intron | 20.0% |
| !!! | TGTGTACTTTAATTTACTAA+TGG | - | chr2_4:49820088-49820107 | Msa0332680:intron | 20.0% |
| !! | GTATACTATTTATAACTTCA+GGG | + | chr2_4:49820454-49820473 | None:intergenic | 20.0% |
| !!! | ATTTCGTATTAAAGCTTTAA+TGG | - | chr2_4:49819444-49819463 | Msa0332680:intron | 20.0% |
| !!! | TCTTTTCTTATATATAAGAC+CGG | + | chr2_4:49819495-49819514 | None:intergenic | 20.0% |
| !! | CTGCCTTATAAAAAATATAT+AGG | - | chr2_4:49819874-49819893 | Msa0332680:intron | 20.0% |
| !! | TACATTTAAGCTTATTGAAA+AGG | - | chr2_4:49819999-49820018 | Msa0332680:intron | 20.0% |
| !!! | TGTGTACTTTAATTTACTAA+TGG | - | chr2_4:49820088-49820107 | Msa0332680:intron | 20.0% |
| !! | GTATACTATTTATAACTTCA+GGG | + | chr2_4:49820454-49820473 | None:intergenic | 20.0% |
| !! | AACACATCACCATATTTTAT+TGG | + | chr2_4:49818814-49818833 | None:intergenic | 25.0% |
| !! | GTCGAAGATAAATTAGATTT+TGG | - | chr2_4:49819203-49819222 | Msa0332680:intron | 25.0% |
| ! | GAATTAAGCAAATTATGTGT+TGG | - | chr2_4:49819810-49819829 | Msa0332680:intron | 25.0% |
| ! | CAATTAAAATAGTATTTGGC+CGG | + | chr2_4:49819919-49819938 | None:intergenic | 25.0% |
| !! | GATTTTATAAGTAACAAAGG+TGG | - | chr2_4:49820245-49820264 | Msa0332680:CDS | 25.0% |
| ! | GGTATACTATTTATAACTTC+AGG | + | chr2_4:49820455-49820474 | None:intergenic | 25.0% |
| ! | GAAGTTATAAATAGTATACC+TGG | - | chr2_4:49820455-49820474 | Msa0332680:CDS | 25.0% |
| !! | AACACATCACCATATTTTAT+TGG | + | chr2_4:49818814-49818833 | None:intergenic | 25.0% |
| !! | GTCGAAGATAAATTAGATTT+TGG | - | chr2_4:49819203-49819222 | Msa0332680:intron | 25.0% |
| ! | GAATTAAGCAAATTATGTGT+TGG | - | chr2_4:49819810-49819829 | Msa0332680:intron | 25.0% |
| ! | CAATTAAAATAGTATTTGGC+CGG | + | chr2_4:49819919-49819938 | None:intergenic | 25.0% |
| !! | GATTTTATAAGTAACAAAGG+TGG | - | chr2_4:49820245-49820264 | Msa0332680:CDS | 25.0% |
| ! | GGTATACTATTTATAACTTC+AGG | + | chr2_4:49820455-49820474 | None:intergenic | 25.0% |
| ! | GAAGTTATAAATAGTATACC+TGG | - | chr2_4:49820455-49820474 | Msa0332680:CDS | 25.0% |
| !!! | TATTTTATTGGTTCTTGCTC+AGG | + | chr2_4:49818802-49818821 | None:intergenic | 30.0% |
| GAGCAAGAACCAATAAAATA+TGG | - | chr2_4:49818802-49818821 | Msa0332680:CDS | 30.0% | |
| TCTGCAGAATATAGAACATT+TGG | - | chr2_4:49818895-49818914 | Msa0332680:intron | 30.0% | |
| !!! | ACCAGCATCTTCATTTTTTT+GGG | + | chr2_4:49818965-49818984 | None:intergenic | 30.0% |
| !!! | AACCAGCATCTTCATTTTTT+TGG | + | chr2_4:49818966-49818985 | None:intergenic | 30.0% |
| ACAAACATTGCAAGAAATGA+AGG | - | chr2_4:49819006-49819025 | Msa0332680:CDS | 30.0% | |
| ! | GAGCACTTATTCATTTTAAG+AGG | - | chr2_4:49819269-49819288 | Msa0332680:intron | 30.0% |
| GATCTAAAAAATAATCCCTC+CGG | - | chr2_4:49819473-49819492 | Msa0332680:intron | 30.0% | |
| TTCTTATATATAAGACCGGA+GGG | + | chr2_4:49819491-49819510 | None:intergenic | 30.0% | |
| TTTCTTATATATAAGACCGG+AGG | + | chr2_4:49819492-49819511 | None:intergenic | 30.0% | |
| !!! | CGGCCAAATACTATTTTAAT+TGG | - | chr2_4:49819917-49819936 | Msa0332680:intron | 30.0% |
| ! | CTTTAATTTACTAATGGAGC+AGG | - | chr2_4:49820094-49820113 | Msa0332680:intron | 30.0% |
| TTTATAAGTAACAAAGGTGG+TGG | - | chr2_4:49820248-49820267 | Msa0332680:CDS | 30.0% | |
| GTTATAAATAGTATACCTGG+TGG | - | chr2_4:49820458-49820477 | Msa0332680:CDS | 30.0% | |
| !!! | TATTTTATTGGTTCTTGCTC+AGG | + | chr2_4:49818802-49818821 | None:intergenic | 30.0% |
| GAGCAAGAACCAATAAAATA+TGG | - | chr2_4:49818802-49818821 | Msa0332680:CDS | 30.0% | |
| TCTGCAGAATATAGAACATT+TGG | - | chr2_4:49818895-49818914 | Msa0332680:intron | 30.0% | |
| !!! | ACCAGCATCTTCATTTTTTT+GGG | + | chr2_4:49818965-49818984 | None:intergenic | 30.0% |
| !!! | AACCAGCATCTTCATTTTTT+TGG | + | chr2_4:49818966-49818985 | None:intergenic | 30.0% |
| ACAAACATTGCAAGAAATGA+AGG | - | chr2_4:49819006-49819025 | Msa0332680:CDS | 30.0% | |
| ! | GAGCACTTATTCATTTTAAG+AGG | - | chr2_4:49819269-49819288 | Msa0332680:intron | 30.0% |
| GATCTAAAAAATAATCCCTC+CGG | - | chr2_4:49819473-49819492 | Msa0332680:intron | 30.0% | |
| TTCTTATATATAAGACCGGA+GGG | + | chr2_4:49819491-49819510 | None:intergenic | 30.0% | |
| TTTCTTATATATAAGACCGG+AGG | + | chr2_4:49819492-49819511 | None:intergenic | 30.0% | |
| !!! | CGGCCAAATACTATTTTAAT+TGG | - | chr2_4:49819917-49819936 | Msa0332680:intron | 30.0% |
| ! | CTTTAATTTACTAATGGAGC+AGG | - | chr2_4:49820094-49820113 | Msa0332680:intron | 30.0% |
| TTTATAAGTAACAAAGGTGG+TGG | - | chr2_4:49820248-49820267 | Msa0332680:CDS | 30.0% | |
| GTTATAAATAGTATACCTGG+TGG | - | chr2_4:49820458-49820477 | Msa0332680:CDS | 30.0% | |
| TCTATATTCTGCAGATTGCA+TGG | + | chr2_4:49818890-49818909 | None:intergenic | 35.0% | |
| GTTTCAGAAACTTATGATGC+TGG | - | chr2_4:49819036-49819055 | Msa0332680:CDS | 35.0% | |
| ATGGTTATGTGAAGATGACT+CGG | - | chr2_4:49819159-49819178 | Msa0332680:CDS | 35.0% | |
| AAGAGAGTCTAATACTCTCA+AGG | - | chr2_4:49819381-49819400 | Msa0332680:intron | 35.0% | |
| ACTTGTAAGAAGCGAAATGA+AGG | - | chr2_4:49819781-49819800 | Msa0332680:intron | 35.0% | |
| TAGTATTTGGCCGGAAAAAA+CGG | + | chr2_4:49819910-49819929 | None:intergenic | 35.0% | |
| AGCGAGAACTTTATTACGAA+TGG | + | chr2_4:49819962-49819981 | None:intergenic | 35.0% | |
| AGTTTGTGGAAGATGAAGAT+AGG | - | chr2_4:49820126-49820145 | Msa0332680:intron | 35.0% | |
| GTTTGTGGAAGATGAAGATA+GGG | - | chr2_4:49820127-49820146 | Msa0332680:intron | 35.0% | |
| AAGATGAAGATAGGGCAAAA+GGG | - | chr2_4:49820135-49820154 | Msa0332680:intron | 35.0% | |
| GTTACGTACCATTGAATCAT+TGG | + | chr2_4:49820321-49820340 | None:intergenic | 35.0% | |
| ! | TGCAACTTTTGTGAAATCAC+AGG | - | chr2_4:49820415-49820434 | Msa0332680:CDS | 35.0% |
| TCTATATTCTGCAGATTGCA+TGG | + | chr2_4:49818890-49818909 | None:intergenic | 35.0% | |
| GTTTCAGAAACTTATGATGC+TGG | - | chr2_4:49819036-49819055 | Msa0332680:CDS | 35.0% | |
| ATGGTTATGTGAAGATGACT+CGG | - | chr2_4:49819159-49819178 | Msa0332680:CDS | 35.0% | |
| AAGAGAGTCTAATACTCTCA+AGG | - | chr2_4:49819381-49819400 | Msa0332680:intron | 35.0% | |
| ACTTGTAAGAAGCGAAATGA+AGG | - | chr2_4:49819781-49819800 | Msa0332680:intron | 35.0% | |
| TAGTATTTGGCCGGAAAAAA+CGG | + | chr2_4:49819910-49819929 | None:intergenic | 35.0% | |
| AGCGAGAACTTTATTACGAA+TGG | + | chr2_4:49819962-49819981 | None:intergenic | 35.0% | |
| AGTTTGTGGAAGATGAAGAT+AGG | - | chr2_4:49820126-49820145 | Msa0332680:intron | 35.0% | |
| GTTTGTGGAAGATGAAGATA+GGG | - | chr2_4:49820127-49820146 | Msa0332680:intron | 35.0% | |
| AAGATGAAGATAGGGCAAAA+GGG | - | chr2_4:49820135-49820154 | Msa0332680:intron | 35.0% | |
| GTTACGTACCATTGAATCAT+TGG | + | chr2_4:49820321-49820340 | None:intergenic | 35.0% | |
| ! | TGCAACTTTTGTGAAATCAC+AGG | - | chr2_4:49820415-49820434 | Msa0332680:CDS | 35.0% |
| TTTGGCCAGACTAGAAAAGA+TGG | - | chr2_4:49818913-49818932 | Msa0332680:intron | 40.0% | |
| GCCCAAAAAAATGAAGATGC+TGG | - | chr2_4:49818961-49818980 | Msa0332680:intron | 40.0% | |
| !! | CTCGGTTGATAGAGACATTA+CGG | - | chr2_4:49819177-49819196 | Msa0332680:intron | 40.0% |
| !!! | AATGGCAACACCGTTTTTTC+CGG | - | chr2_4:49819897-49819916 | Msa0332680:intron | 40.0% |
| GAAGATGAAGATAGGGCAAA+AGG | - | chr2_4:49820134-49820153 | Msa0332680:intron | 40.0% | |
| AGATAGGGCAAAAGGGAATA+TGG | - | chr2_4:49820142-49820161 | Msa0332680:intron | 40.0% | |
| GAATATGGCTGGCAATGAAT+TGG | - | chr2_4:49820157-49820176 | Msa0332680:intron | 40.0% | |
| GGCAATGAATTGGAAGATGA+AGG | - | chr2_4:49820167-49820186 | Msa0332680:intron | 40.0% | |
| TCTTCTGTTACTCCCACTTT+AGG | + | chr2_4:49820221-49820240 | None:intergenic | 40.0% | |
| GGAACCAAAATGAGAATGCT+TGG | - | chr2_4:49820294-49820313 | Msa0332680:CDS | 40.0% | |
| ! | TGGACCAAGCATTCTCATTT+TGG | + | chr2_4:49820301-49820320 | None:intergenic | 40.0% |
| TGCTTGGTCCAATGATTCAA+TGG | - | chr2_4:49820310-49820329 | Msa0332680:CDS | 40.0% | |
| AAATAGTATACCTGGTGGCA+TGG | - | chr2_4:49820463-49820482 | Msa0332680:CDS | 40.0% | |
| AATAGTATACCTGGTGGCAT+GGG | - | chr2_4:49820464-49820483 | Msa0332680:CDS | 40.0% | |
| TTTGGCCAGACTAGAAAAGA+TGG | - | chr2_4:49818913-49818932 | Msa0332680:intron | 40.0% | |
| GCCCAAAAAAATGAAGATGC+TGG | - | chr2_4:49818961-49818980 | Msa0332680:intron | 40.0% | |
| !! | CTCGGTTGATAGAGACATTA+CGG | - | chr2_4:49819177-49819196 | Msa0332680:intron | 40.0% |
| !!! | AATGGCAACACCGTTTTTTC+CGG | - | chr2_4:49819897-49819916 | Msa0332680:intron | 40.0% |
| GAAGATGAAGATAGGGCAAA+AGG | - | chr2_4:49820134-49820153 | Msa0332680:intron | 40.0% | |
| AGATAGGGCAAAAGGGAATA+TGG | - | chr2_4:49820142-49820161 | Msa0332680:intron | 40.0% | |
| GAATATGGCTGGCAATGAAT+TGG | - | chr2_4:49820157-49820176 | Msa0332680:intron | 40.0% | |
| GGCAATGAATTGGAAGATGA+AGG | - | chr2_4:49820167-49820186 | Msa0332680:intron | 40.0% | |
| TCTTCTGTTACTCCCACTTT+AGG | + | chr2_4:49820221-49820240 | None:intergenic | 40.0% | |
| GGAACCAAAATGAGAATGCT+TGG | - | chr2_4:49820294-49820313 | Msa0332680:CDS | 40.0% | |
| ! | TGGACCAAGCATTCTCATTT+TGG | + | chr2_4:49820301-49820320 | None:intergenic | 40.0% |
| TGCTTGGTCCAATGATTCAA+TGG | - | chr2_4:49820310-49820329 | Msa0332680:CDS | 40.0% | |
| AAATAGTATACCTGGTGGCA+TGG | - | chr2_4:49820463-49820482 | Msa0332680:CDS | 40.0% | |
| AATAGTATACCTGGTGGCAT+GGG | - | chr2_4:49820464-49820483 | Msa0332680:CDS | 40.0% | |
| GGTGATGTGTTCAATGTGTC+TGG | - | chr2_4:49818823-49818842 | Msa0332680:CDS | 45.0% | |
| !! | CAGGTCCATCTTTTCTAGTC+TGG | + | chr2_4:49818921-49818940 | None:intergenic | 45.0% |
| AGAAGCGAAATGAAGGTTCG+TGG | - | chr2_4:49819788-49819807 | Msa0332680:intron | 45.0% | |
| TTACTAATGGAGCAGGTCCT+AGG | - | chr2_4:49820101-49820120 | Msa0332680:intron | 45.0% | |
| TACTAATGGAGCAGGTCCTA+GGG | - | chr2_4:49820102-49820121 | Msa0332680:intron | 45.0% | |
| CATCTTCCACAAACTTCCCT+AGG | + | chr2_4:49820121-49820140 | None:intergenic | 45.0% | |
| TCAGCTCAAGCTCCTAAAGT+GGG | - | chr2_4:49820206-49820225 | Msa0332680:intron | 45.0% | |
| ! | GCATGTTTGAAACGTCACGT+TGG | - | chr2_4:49820379-49820398 | Msa0332680:CDS | 45.0% |
| GGTGATGTGTTCAATGTGTC+TGG | - | chr2_4:49818823-49818842 | Msa0332680:CDS | 45.0% | |
| !! | CAGGTCCATCTTTTCTAGTC+TGG | + | chr2_4:49818921-49818940 | None:intergenic | 45.0% |
| AGAAGCGAAATGAAGGTTCG+TGG | - | chr2_4:49819788-49819807 | Msa0332680:intron | 45.0% | |
| TTACTAATGGAGCAGGTCCT+AGG | - | chr2_4:49820101-49820120 | Msa0332680:intron | 45.0% | |
| TACTAATGGAGCAGGTCCTA+GGG | - | chr2_4:49820102-49820121 | Msa0332680:intron | 45.0% | |
| CATCTTCCACAAACTTCCCT+AGG | + | chr2_4:49820121-49820140 | None:intergenic | 45.0% | |
| TCAGCTCAAGCTCCTAAAGT+GGG | - | chr2_4:49820206-49820225 | Msa0332680:intron | 45.0% | |
| ! | GCATGTTTGAAACGTCACGT+TGG | - | chr2_4:49820379-49820398 | Msa0332680:CDS | 45.0% |
| !! | TTAATATAAATAGTTAATAA+TGG | - | chr2_4:49819140-49819159 | Msa0332680:CDS | 5.0% |
| !! | TTAATATAAATAGTTAATAA+TGG | - | chr2_4:49819140-49819159 | Msa0332680:CDS | 5.0% |
| ! | GCAGCATCTCTTGGTGCAAT+GGG | + | chr2_4:49818865-49818884 | None:intergenic | 50.0% |
| ! | AGCAGCATCTCTTGGTGCAA+TGG | + | chr2_4:49818866-49818885 | None:intergenic | 50.0% |
| TGCATGGTAGCAGCATCTCT+TGG | + | chr2_4:49818874-49818893 | None:intergenic | 50.0% | |
| GCAGAAGTCATGAGAGAAGC+AGG | + | chr2_4:49818940-49818959 | None:intergenic | 50.0% | |
| CGTGTCATCACTGAGACTCT+TGG | - | chr2_4:49819063-49819082 | Msa0332680:CDS | 50.0% | |
| GTCATCACTGAGACTCTTGG+TGG | - | chr2_4:49819066-49819085 | Msa0332680:CDS | 50.0% | |
| AGGGCAAAAGGGAATATGGC+TGG | - | chr2_4:49820146-49820165 | Msa0332680:intron | 50.0% | |
| ! | CACTTTAGGAGCTTGAGCTG+AGG | + | chr2_4:49820207-49820226 | None:intergenic | 50.0% |
| CTCAGCTCAAGCTCCTAAAG+TGG | - | chr2_4:49820205-49820224 | Msa0332680:intron | 50.0% | |
| ! | CCATGAATCCTCGGTTTGCT+GGG | - | chr2_4:49820273-49820292 | Msa0332680:CDS | 50.0% |
| !!! | TTTTGGTTCCCAGCAAACCG+AGG | + | chr2_4:49820284-49820303 | None:intergenic | 50.0% |
| ! | GCAGCATCTCTTGGTGCAAT+GGG | + | chr2_4:49818865-49818884 | None:intergenic | 50.0% |
| ! | AGCAGCATCTCTTGGTGCAA+TGG | + | chr2_4:49818866-49818885 | None:intergenic | 50.0% |
| TGCATGGTAGCAGCATCTCT+TGG | + | chr2_4:49818874-49818893 | None:intergenic | 50.0% | |
| GCAGAAGTCATGAGAGAAGC+AGG | + | chr2_4:49818940-49818959 | None:intergenic | 50.0% | |
| CGTGTCATCACTGAGACTCT+TGG | - | chr2_4:49819063-49819082 | Msa0332680:CDS | 50.0% | |
| GTCATCACTGAGACTCTTGG+TGG | - | chr2_4:49819066-49819085 | Msa0332680:CDS | 50.0% | |
| AGGGCAAAAGGGAATATGGC+TGG | - | chr2_4:49820146-49820165 | Msa0332680:intron | 50.0% | |
| ! | CACTTTAGGAGCTTGAGCTG+AGG | + | chr2_4:49820207-49820226 | None:intergenic | 50.0% |
| CTCAGCTCAAGCTCCTAAAG+TGG | - | chr2_4:49820205-49820224 | Msa0332680:intron | 50.0% | |
| ! | CCATGAATCCTCGGTTTGCT+GGG | - | chr2_4:49820273-49820292 | Msa0332680:CDS | 50.0% |
| !!! | TTTTGGTTCCCAGCAAACCG+AGG | + | chr2_4:49820284-49820303 | None:intergenic | 50.0% |
| GGTTCTTGCTCAGGTCTCCT+TGG | + | chr2_4:49818793-49818812 | None:intergenic | 55.0% | |
| ! | CACTGAGACTCTTGGTGGAC+AGG | - | chr2_4:49819071-49819090 | Msa0332680:CDS | 55.0% |
| GCAGGTCCTAGGGAAGTTTG+TGG | - | chr2_4:49820112-49820131 | Msa0332680:intron | 55.0% | |
| GCTTGAGCTGAGGCAGGATT+AGG | + | chr2_4:49820197-49820216 | None:intergenic | 55.0% | |
| TTAGGAGCTTGAGCTGAGGC+AGG | + | chr2_4:49820203-49820222 | None:intergenic | 55.0% | |
| !! | GTGGTGGTGCCATGAATCCT+CGG | - | chr2_4:49820264-49820283 | Msa0332680:CDS | 55.0% |
| ! | GCCATGAATCCTCGGTTTGC+TGG | - | chr2_4:49820272-49820291 | Msa0332680:CDS | 55.0% |
| CCCAGCAAACCGAGGATTCA+TGG | + | chr2_4:49820276-49820295 | None:intergenic | 55.0% | |
| ATCTGCAGTCGCAGTTGCCA+TGG | + | chr2_4:49820495-49820514 | None:intergenic | 55.0% | |
| GGTTCTTGCTCAGGTCTCCT+TGG | + | chr2_4:49818793-49818812 | None:intergenic | 55.0% | |
| ! | CACTGAGACTCTTGGTGGAC+AGG | - | chr2_4:49819071-49819090 | Msa0332680:CDS | 55.0% |
| GCAGGTCCTAGGGAAGTTTG+TGG | - | chr2_4:49820112-49820131 | Msa0332680:intron | 55.0% | |
| GCTTGAGCTGAGGCAGGATT+AGG | + | chr2_4:49820197-49820216 | None:intergenic | 55.0% | |
| TTAGGAGCTTGAGCTGAGGC+AGG | + | chr2_4:49820203-49820222 | None:intergenic | 55.0% | |
| !! | GTGGTGGTGCCATGAATCCT+CGG | - | chr2_4:49820264-49820283 | Msa0332680:CDS | 55.0% |
| ! | GCCATGAATCCTCGGTTTGC+TGG | - | chr2_4:49820272-49820291 | Msa0332680:CDS | 55.0% |
| CCCAGCAAACCGAGGATTCA+TGG | + | chr2_4:49820276-49820295 | None:intergenic | 55.0% | |
| ATCTGCAGTCGCAGTTGCCA+TGG | + | chr2_4:49820495-49820514 | None:intergenic | 55.0% | |
| ATGGATGCTCCCATGCCACC+AGG | + | chr2_4:49820476-49820495 | None:intergenic | 60.0% | |
| !! | TGGTGGCATGGGAGCATCCA+TGG | - | chr2_4:49820475-49820494 | Msa0332680:CDS | 60.0% |
| ATGGATGCTCCCATGCCACC+AGG | + | chr2_4:49820476-49820495 | None:intergenic | 60.0% | |
| !! | TGGTGGCATGGGAGCATCCA+TGG | - | chr2_4:49820475-49820494 | Msa0332680:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 49818775 | 49820535 | 49818775 | ID=Msa0332680;Name=Msa0332680 |
| chr2_4 | mRNA | 49818775 | 49820535 | 49818775 | ID=Msa0332680-mRNA-1;Parent=Msa0332680;Name=Msa0332680-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|3|0|210 |
| chr2_4 | exon | 49820218 | 49820535 | 49820218 | ID=Msa0332680-mRNA-1:exon:14932;Parent=Msa0332680-mRNA-1 |
| chr2_4 | exon | 49818979 | 49819194 | 49818979 | ID=Msa0332680-mRNA-1:exon:14931;Parent=Msa0332680-mRNA-1 |
| chr2_4 | exon | 49818775 | 49818873 | 49818775 | ID=Msa0332680-mRNA-1:exon:14930;Parent=Msa0332680-mRNA-1 |
| chr2_4 | CDS | 49820218 | 49820535 | 49820218 | ID=Msa0332680-mRNA-1:cds;Parent=Msa0332680-mRNA-1 |
| chr2_4 | CDS | 49818979 | 49819194 | 49818979 | ID=Msa0332680-mRNA-1:cds;Parent=Msa0332680-mRNA-1 |
| chr2_4 | CDS | 49818775 | 49818873 | 49818775 | ID=Msa0332680-mRNA-1:cds;Parent=Msa0332680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
