Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918740 | XP_003612158.1 | 90.000 | 250 | 15 | 3 | 14 | 257 | 15 | 260 | 3.40e-162 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918740 | sp|Q6YBV1|WUS_ANTMA | 47.826 | 253 | 87 | 10 | 17 | 251 | 24 | 249 | 5.84e-58 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0918740 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0332680 | Msa0918740 | 0.819843 | 9.388095e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918740 | MtrunA17_Chr5g0405351 | 90.000 | 250 | 15 | 3 | 14 | 257 | 15 | 260 | 3.12e-166 | 461 |
| Msa0918740 | MtrunA17_Chr4g0043891 | 62.687 | 67 | 24 | 1 | 25 | 91 | 4 | 69 | 7.47e-24 | 96.7 |
| Msa0918740 | MtrunA17_Chr8g0392991 | 67.188 | 64 | 20 | 1 | 28 | 91 | 95 | 157 | 7.48e-24 | 98.6 |
| Msa0918740 | MtrunA17_Chr5g0436661 | 58.108 | 74 | 27 | 2 | 29 | 99 | 33 | 105 | 8.61e-24 | 94.7 |
| Msa0918740 | MtrunA17_Chr4g0031341 | 65.079 | 63 | 21 | 1 | 29 | 91 | 25 | 86 | 2.57e-22 | 92.4 |
| Msa0918740 | MtrunA17_Chr7g0238431 | 64.062 | 64 | 22 | 1 | 28 | 91 | 7 | 69 | 2.60e-22 | 91.3 |
| Msa0918740 | MtrunA17_Chr1g0153171 | 60.938 | 64 | 24 | 1 | 28 | 91 | 89 | 151 | 3.21e-21 | 89.4 |
| Msa0918740 | MtrunA17_Chr8g0385441 | 74.468 | 47 | 12 | 0 | 45 | 91 | 97 | 143 | 4.50e-18 | 79.0 |
| Msa0918740 | MtrunA17_Chr3g0125111 | 72.340 | 47 | 13 | 0 | 45 | 91 | 95 | 141 | 6.12e-18 | 78.6 |
| Msa0918740 | MtrunA17_Chr7g0223471 | 44.118 | 68 | 37 | 1 | 25 | 92 | 43 | 109 | 2.73e-14 | 72.0 |
| Msa0918740 | MtrunA17_Chr2g0283141 | 43.478 | 69 | 38 | 1 | 23 | 91 | 49 | 116 | 1.18e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918740 | AT2G17950.1 | 40.562 | 249 | 107 | 10 | 24 | 248 | 33 | 264 | 1.66e-45 | 154 |
| Msa0918740 | AT3G18010.1 | 67.188 | 64 | 20 | 1 | 28 | 91 | 75 | 137 | 7.04e-24 | 99.0 |
| Msa0918740 | AT5G59340.1 | 59.459 | 74 | 29 | 1 | 18 | 91 | 3 | 75 | 9.95e-24 | 96.7 |
| Msa0918740 | AT3G11260.1 | 58.667 | 75 | 28 | 2 | 17 | 91 | 14 | 85 | 2.80e-23 | 93.6 |
| Msa0918740 | AT5G05770.1 | 60.000 | 70 | 27 | 1 | 29 | 98 | 29 | 97 | 1.39e-22 | 90.1 |
| Msa0918740 | AT2G28610.1 | 60.606 | 66 | 25 | 1 | 26 | 91 | 5 | 69 | 1.82e-21 | 90.5 |
| Msa0918740 | AT1G46480.2 | 60.938 | 64 | 24 | 1 | 28 | 91 | 89 | 151 | 2.62e-21 | 88.6 |
| Msa0918740 | AT1G46480.1 | 60.938 | 64 | 24 | 1 | 28 | 91 | 89 | 151 | 1.65e-20 | 87.8 |
| Msa0918740 | AT2G01500.1 | 64.286 | 56 | 19 | 1 | 29 | 84 | 61 | 115 | 6.47e-19 | 84.0 |
| Msa0918740 | AT2G33880.1 | 44.286 | 70 | 38 | 1 | 23 | 92 | 49 | 117 | 3.59e-14 | 71.6 |
| Msa0918740 | AT5G45980.1 | 49.231 | 65 | 32 | 1 | 27 | 91 | 53 | 116 | 3.61e-14 | 71.6 |
| Msa0918740 | AT2G33880.2 | 44.286 | 70 | 38 | 1 | 23 | 92 | 49 | 117 | 4.02e-14 | 71.6 |
Find 48 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCCTAAGTGAGGGTTTA+TGG | 0.166513 | 6_2:-47579346 | None:intergenic |
| TTCACCAAACAATGGGATTA+TGG | 0.189862 | 6_2:+47578286 | Msa0918740:CDS |
| ATGTTCTTCTGCTGATAATA+TGG | 0.223760 | 6_2:+47578795 | Msa0918740:CDS |
| CTATTATTGCTGCTGCTAAT+TGG | 0.230551 | 6_2:+47578573 | Msa0918740:CDS |
| CTAGAGAAAGACAGAATAAA+AGG | 0.267042 | 6_2:+47578495 | Msa0918740:CDS |
| TTAGCATAAGCTGAAGAATA+TGG | 0.320661 | 6_2:-47579387 | None:intergenic |
| TCTTCCATGATTTCTTCATT+AGG | 0.332083 | 6_2:-47579429 | None:intergenic |
| TGTGAACAAGGACAAGAAAA+TGG | 0.368835 | 6_2:+47579453 | Msa0918740:CDS |
| TCACCATGCATAGGGAATAA+AGG | 0.377353 | 6_2:-47579498 | None:intergenic |
| TCACCAAACAATGGGATTAT+GGG | 0.391816 | 6_2:+47578287 | Msa0918740:CDS |
| CTCTGAATCTGTTCAACACT+TGG | 0.394597 | 6_2:-47578398 | None:intergenic |
| ATTCTTATCTGATCTGTTGT+TGG | 0.397466 | 6_2:-47578338 | None:intergenic |
| TTTCCATATAGTTACCAATC+TGG | 0.403343 | 6_2:-47578828 | None:intergenic |
| GCAATAATAGTATTGTTGTT+TGG | 0.407919 | 6_2:-47578560 | None:intergenic |
| CACCATGCATAGGGAATAAA+GGG | 0.416329 | 6_2:-47579497 | None:intergenic |
| TCTGCTAGGTTAAGACAGTA+TGG | 0.419676 | 6_2:+47578425 | Msa0918740:CDS |
| TGATGTTGTTCATGATGATC+AGG | 0.428226 | 6_2:-47578599 | None:intergenic |
| AGGCCAGATTGGTAACTATA+TGG | 0.432080 | 6_2:+47578825 | Msa0918740:CDS |
| GTTTGGTGCTCTTTGAATGA+TGG | 0.443486 | 6_2:-47578543 | None:intergenic |
| CTGCCCATAATCCCATTGTT+TGG | 0.443872 | 6_2:-47578290 | None:intergenic |
| AACAACATTCACCAAACAAT+GGG | 0.452239 | 6_2:+47578279 | Msa0918740:CDS |
| TTTGGTGCTCTTTGAATGAT+GGG | 0.453249 | 6_2:-47578542 | None:intergenic |
| AAGACCTAATGAAGAAATCA+TGG | 0.463541 | 6_2:+47579425 | Msa0918740:CDS |
| AAGGATCTTTACTACAACAA+TGG | 0.474991 | 6_2:+47578365 | Msa0918740:CDS |
| AGTTAGATGAATTTCATTTG+AGG | 0.478654 | 6_2:-47579545 | None:intergenic |
| TGTTGTGTCTGCTGCTGTTG+TGG | 0.480611 | 6_2:-47578260 | None:intergenic |
| ATGGTTACTGCAGGCCAGAT+TGG | 0.481591 | 6_2:+47578814 | Msa0918740:CDS |
| AACCCTCACTTAGGATGGAT+TGG | 0.494244 | 6_2:+47579351 | Msa0918740:CDS |
| AGACAGTATGGTAAGATTGA+AGG | 0.507784 | 6_2:+47578437 | Msa0918740:CDS |
| GGATGTAGCAGCAGTCAAGT+TGG | 0.519817 | 6_2:+47579318 | Msa0918740:CDS |
| TAGGAGTGCACAATATCAGC+TGG | 0.529304 | 6_2:+47579297 | Msa0918740:intron |
| CCATAAACCCTCACTTAGGA+TGG | 0.538741 | 6_2:+47579346 | Msa0918740:CDS |
| GAATGTCTTCACCATGCATA+GGG | 0.539595 | 6_2:-47579506 | None:intergenic |
| CTCCCTTTATTCCCTATGCA+TGG | 0.543247 | 6_2:+47579495 | Msa0918740:CDS |
| CAACAACATTCACCAAACAA+TGG | 0.552485 | 6_2:+47578278 | Msa0918740:CDS |
| AAAATTGTAATTAGTATGGT+TGG | 0.552762 | 6_2:-47578648 | None:intergenic |
| TGAATGTCTTCACCATGCAT+AGG | 0.568756 | 6_2:-47579507 | None:intergenic |
| GCTGATAATATGGTTACTGC+AGG | 0.581156 | 6_2:+47578805 | Msa0918740:CDS |
| AGTACCATAAACCCTCACTT+AGG | 0.599826 | 6_2:+47579342 | Msa0918740:CDS |
| AGATTCAGAGAATCTCTGCT+AGG | 0.608727 | 6_2:+47578411 | Msa0918740:CDS |
| GACCAATCCATCCTAAGTGA+GGG | 0.618647 | 6_2:-47579353 | None:intergenic |
| ATCATGGAAGAATGTGAACA+AGG | 0.627217 | 6_2:+47579441 | Msa0918740:CDS |
| TGACCAATCCATCCTAAGTG+AGG | 0.637357 | 6_2:-47579354 | None:intergenic |
| CATGGTGAAGACATTCATGA+TGG | 0.652639 | 6_2:+47579513 | Msa0918740:CDS |
| CATGCATAGGGAATAAAGGG+AGG | 0.658861 | 6_2:-47579494 | None:intergenic |
| ATGCATAGGGAATAAAGGGA+GGG | 0.659824 | 6_2:-47579493 | None:intergenic |
| GCAGCAGACAAAGTAGAACA+AGG | 0.695509 | 6_2:+47578309 | Msa0918740:CDS |
| GCAGACAAAGTAGAACAAGG+TGG | 0.752615 | 6_2:+47578312 | Msa0918740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGGAAAAAAAAAAATTAAAA+TGG | - | chr6_2:47579271-47579290 | None:intergenic | 10.0% |
| !! | AGGAAAAAAAAAAATTAAAA+TGG | - | chr6_2:47579271-47579290 | None:intergenic | 10.0% |
| !! | ATGAAAAATTGTAATTAGTA+TGG | - | chr6_2:47578655-47578674 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAAGTAACAAAT+TGG | + | chr6_2:47578705-47578724 | Msa0918740:intron | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | + | chr6_2:47579010-47579029 | Msa0918740:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | - | chr6_2:47579070-47579089 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | + | chr6_2:47579194-47579213 | Msa0918740:intron | 15.0% |
| !!! | TTTTTTTTTTCCTTATTCTT+AGG | + | chr6_2:47579278-47579297 | Msa0918740:intron | 15.0% |
| !! | ATGAAAAATTGTAATTAGTA+TGG | - | chr6_2:47578655-47578674 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAAGTAACAAAT+TGG | + | chr6_2:47578705-47578724 | Msa0918740:intron | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | + | chr6_2:47579010-47579029 | Msa0918740:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | - | chr6_2:47579070-47579089 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | + | chr6_2:47579194-47579213 | Msa0918740:intron | 15.0% |
| !!! | TTTTTTTTTTCCTTATTCTT+AGG | + | chr6_2:47579278-47579297 | Msa0918740:intron | 15.0% |
| !! | AAAATTGTAATTAGTATGGT+TGG | - | chr6_2:47578651-47578670 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTTGTCTCAAAA+AGG | - | chr6_2:47578696-47578715 | None:intergenic | 20.0% |
| !! | ACATACACAAGAATTAATAT+AGG | - | chr6_2:47578751-47578770 | None:intergenic | 20.0% |
| !! | ATTCTTGTGTATGTTTATTT+AGG | + | chr6_2:47578757-47578776 | Msa0918740:intron | 20.0% |
| !! | TTCTTGTGTATGTTTATTTA+GGG | + | chr6_2:47578758-47578777 | Msa0918740:intron | 20.0% |
| !! | AAAATTGTAATTAGTATGGT+TGG | - | chr6_2:47578651-47578670 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTTGTCTCAAAA+AGG | - | chr6_2:47578696-47578715 | None:intergenic | 20.0% |
| !! | ACATACACAAGAATTAATAT+AGG | - | chr6_2:47578751-47578770 | None:intergenic | 20.0% |
| !! | ATTCTTGTGTATGTTTATTT+AGG | + | chr6_2:47578757-47578776 | Msa0918740:intron | 20.0% |
| !! | TTCTTGTGTATGTTTATTTA+GGG | + | chr6_2:47578758-47578777 | Msa0918740:intron | 20.0% |
| !! | AGATCAGATAAGAATTTTGA+AGG | + | chr6_2:47578346-47578365 | Msa0918740:CDS | 25.0% |
| !! | GCAATAATAGTATTGTTGTT+TGG | - | chr6_2:47578563-47578582 | None:intergenic | 25.0% |
| !! | AATTACAATTTTTCATCTGC+TGG | + | chr6_2:47578659-47578678 | Msa0918740:CDS | 25.0% |
| !! | ACTATATGGAAAAGAGTTTT+AGG | + | chr6_2:47578839-47578858 | Msa0918740:CDS | 25.0% |
| !! | CTATATGGAAAAGAGTTTTA+GGG | + | chr6_2:47578840-47578859 | Msa0918740:CDS | 25.0% |
| ! | TTTCTATATCAAATCTCACA+TGG | - | chr6_2:47578961-47578980 | None:intergenic | 25.0% |
| ! | TTCTTATTATGGAAATTGTC+TGG | - | chr6_2:47579041-47579060 | None:intergenic | 25.0% |
| !! | AGATCAGATAAGAATTTTGA+AGG | + | chr6_2:47578346-47578365 | Msa0918740:CDS | 25.0% |
| !! | GCAATAATAGTATTGTTGTT+TGG | - | chr6_2:47578563-47578582 | None:intergenic | 25.0% |
| !! | AATTACAATTTTTCATCTGC+TGG | + | chr6_2:47578659-47578678 | Msa0918740:CDS | 25.0% |
| !! | ACTATATGGAAAAGAGTTTT+AGG | + | chr6_2:47578839-47578858 | Msa0918740:CDS | 25.0% |
| !! | CTATATGGAAAAGAGTTTTA+GGG | + | chr6_2:47578840-47578859 | Msa0918740:CDS | 25.0% |
| ! | TTTCTATATCAAATCTCACA+TGG | - | chr6_2:47578961-47578980 | None:intergenic | 25.0% |
| ! | TTCTTATTATGGAAATTGTC+TGG | - | chr6_2:47579041-47579060 | None:intergenic | 25.0% |
| AACAACATTCACCAAACAAT+GGG | + | chr6_2:47578279-47578298 | Msa0918740:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | - | chr6_2:47578341-47578360 | None:intergenic | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | + | chr6_2:47578365-47578384 | Msa0918740:CDS | 30.0% | |
| ! | AAGGCAAAAATGTCTTTTAC+TGG | + | chr6_2:47578456-47578475 | Msa0918740:CDS | 30.0% |
| CTAGAGAAAGACAGAATAAA+AGG | + | chr6_2:47578495-47578514 | Msa0918740:CDS | 30.0% | |
| ATGTTCTTCTGCTGATAATA+TGG | + | chr6_2:47578795-47578814 | Msa0918740:CDS | 30.0% | |
| TTTCCATATAGTTACCAATC+TGG | - | chr6_2:47578831-47578850 | None:intergenic | 30.0% | |
| !! | ATGAAAACTATGATGGATCA+TGG | - | chr6_2:47578934-47578953 | None:intergenic | 30.0% |
| TGAGGTTGTTCTTCTTATTA+TGG | - | chr6_2:47579052-47579071 | None:intergenic | 30.0% | |
| TTAGCATAAGCTGAAGAATA+TGG | - | chr6_2:47579390-47579409 | None:intergenic | 30.0% | |
| AAGACCTAATGAAGAAATCA+TGG | + | chr6_2:47579425-47579444 | Msa0918740:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+AGG | - | chr6_2:47579432-47579451 | None:intergenic | 30.0% | |
| AACAACATTCACCAAACAAT+GGG | + | chr6_2:47578279-47578298 | Msa0918740:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | - | chr6_2:47578341-47578360 | None:intergenic | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | + | chr6_2:47578365-47578384 | Msa0918740:CDS | 30.0% | |
| ! | AAGGCAAAAATGTCTTTTAC+TGG | + | chr6_2:47578456-47578475 | Msa0918740:CDS | 30.0% |
| CTAGAGAAAGACAGAATAAA+AGG | + | chr6_2:47578495-47578514 | Msa0918740:CDS | 30.0% | |
| ATGTTCTTCTGCTGATAATA+TGG | + | chr6_2:47578795-47578814 | Msa0918740:CDS | 30.0% | |
| TTTCCATATAGTTACCAATC+TGG | - | chr6_2:47578831-47578850 | None:intergenic | 30.0% | |
| !! | ATGAAAACTATGATGGATCA+TGG | - | chr6_2:47578934-47578953 | None:intergenic | 30.0% |
| TGAGGTTGTTCTTCTTATTA+TGG | - | chr6_2:47579052-47579071 | None:intergenic | 30.0% | |
| TTAGCATAAGCTGAAGAATA+TGG | - | chr6_2:47579390-47579409 | None:intergenic | 30.0% | |
| AAGACCTAATGAAGAAATCA+TGG | + | chr6_2:47579425-47579444 | Msa0918740:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+AGG | - | chr6_2:47579432-47579451 | None:intergenic | 30.0% | |
| CAACAACATTCACCAAACAA+TGG | + | chr6_2:47578278-47578297 | Msa0918740:CDS | 35.0% | |
| TTCACCAAACAATGGGATTA+TGG | + | chr6_2:47578286-47578305 | Msa0918740:CDS | 35.0% | |
| TCACCAAACAATGGGATTAT+GGG | + | chr6_2:47578287-47578306 | Msa0918740:CDS | 35.0% | |
| AGACAGTATGGTAAGATTGA+AGG | + | chr6_2:47578437-47578456 | Msa0918740:CDS | 35.0% | |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | - | chr6_2:47578545-47578564 | None:intergenic | 35.0% |
| CTATTATTGCTGCTGCTAAT+TGG | + | chr6_2:47578573-47578592 | Msa0918740:CDS | 35.0% | |
| TGATGTTGTTCATGATGATC+AGG | - | chr6_2:47578602-47578621 | None:intergenic | 35.0% | |
| TGGATTGAATGCATTGCAAA+GGG | - | chr6_2:47578914-47578933 | None:intergenic | 35.0% | |
| ! | ATGGATTGAATGCATTGCAA+AGG | - | chr6_2:47578915-47578934 | None:intergenic | 35.0% |
| TGGATGCATGAAAACTATGA+TGG | - | chr6_2:47578941-47578960 | None:intergenic | 35.0% | |
| ! | AATTGTCTGGATTGTCCTTT+TGG | - | chr6_2:47579028-47579047 | None:intergenic | 35.0% |
| TAGTGAAACTGAACTCTTGT+TGG | - | chr6_2:47579139-47579158 | None:intergenic | 35.0% | |
| ATTGTGCACTCCTAAGAATA+AGG | - | chr6_2:47579291-47579310 | None:intergenic | 35.0% | |
| ATCATGGAAGAATGTGAACA+AGG | + | chr6_2:47579441-47579460 | Msa0918740:CDS | 35.0% | |
| TGTGAACAAGGACAAGAAAA+TGG | + | chr6_2:47579453-47579472 | Msa0918740:CDS | 35.0% | |
| ! | AAAGGGAGGGTTTCAATTTT+AGG | - | chr6_2:47579483-47579502 | None:intergenic | 35.0% |
| CAACAACATTCACCAAACAA+TGG | + | chr6_2:47578278-47578297 | Msa0918740:CDS | 35.0% | |
| TTCACCAAACAATGGGATTA+TGG | + | chr6_2:47578286-47578305 | Msa0918740:CDS | 35.0% | |
| TCACCAAACAATGGGATTAT+GGG | + | chr6_2:47578287-47578306 | Msa0918740:CDS | 35.0% | |
| AGACAGTATGGTAAGATTGA+AGG | + | chr6_2:47578437-47578456 | Msa0918740:CDS | 35.0% | |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | - | chr6_2:47578545-47578564 | None:intergenic | 35.0% |
| CTATTATTGCTGCTGCTAAT+TGG | + | chr6_2:47578573-47578592 | Msa0918740:CDS | 35.0% | |
| TGATGTTGTTCATGATGATC+AGG | - | chr6_2:47578602-47578621 | None:intergenic | 35.0% | |
| TGGATTGAATGCATTGCAAA+GGG | - | chr6_2:47578914-47578933 | None:intergenic | 35.0% | |
| ! | ATGGATTGAATGCATTGCAA+AGG | - | chr6_2:47578915-47578934 | None:intergenic | 35.0% |
| TGGATGCATGAAAACTATGA+TGG | - | chr6_2:47578941-47578960 | None:intergenic | 35.0% | |
| ! | AATTGTCTGGATTGTCCTTT+TGG | - | chr6_2:47579028-47579047 | None:intergenic | 35.0% |
| TAGTGAAACTGAACTCTTGT+TGG | - | chr6_2:47579139-47579158 | None:intergenic | 35.0% | |
| ATTGTGCACTCCTAAGAATA+AGG | - | chr6_2:47579291-47579310 | None:intergenic | 35.0% | |
| ATCATGGAAGAATGTGAACA+AGG | + | chr6_2:47579441-47579460 | Msa0918740:CDS | 35.0% | |
| TGTGAACAAGGACAAGAAAA+TGG | + | chr6_2:47579453-47579472 | Msa0918740:CDS | 35.0% | |
| ! | AAAGGGAGGGTTTCAATTTT+AGG | - | chr6_2:47579483-47579502 | None:intergenic | 35.0% |
| CTCTGAATCTGTTCAACACT+TGG | - | chr6_2:47578401-47578420 | None:intergenic | 40.0% | |
| AGATTCAGAGAATCTCTGCT+AGG | + | chr6_2:47578411-47578430 | Msa0918740:CDS | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | + | chr6_2:47578425-47578444 | Msa0918740:CDS | 40.0% | |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | - | chr6_2:47578546-47578565 | None:intergenic | 40.0% |
| GCTGATAATATGGTTACTGC+AGG | + | chr6_2:47578805-47578824 | Msa0918740:CDS | 40.0% | |
| ! | AGGCCAGATTGGTAACTATA+TGG | + | chr6_2:47578825-47578844 | Msa0918740:CDS | 40.0% |
| !! | CTTGTTGGTGGATTCAATAC+AGG | - | chr6_2:47579124-47579143 | None:intergenic | 40.0% |
| TGAAACTGAACTCTTGTTGG+TGG | - | chr6_2:47579136-47579155 | None:intergenic | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | + | chr6_2:47579342-47579361 | Msa0918740:CDS | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | - | chr6_2:47579496-47579515 | None:intergenic | 40.0% | |
| CACCATGCATAGGGAATAAA+GGG | - | chr6_2:47579500-47579519 | None:intergenic | 40.0% | |
| TCACCATGCATAGGGAATAA+AGG | - | chr6_2:47579501-47579520 | None:intergenic | 40.0% | |
| GAATGTCTTCACCATGCATA+GGG | - | chr6_2:47579509-47579528 | None:intergenic | 40.0% | |
| TGAATGTCTTCACCATGCAT+AGG | - | chr6_2:47579510-47579529 | None:intergenic | 40.0% | |
| CATGGTGAAGACATTCATGA+TGG | + | chr6_2:47579513-47579532 | Msa0918740:CDS | 40.0% | |
| CTCTGAATCTGTTCAACACT+TGG | - | chr6_2:47578401-47578420 | None:intergenic | 40.0% | |
| AGATTCAGAGAATCTCTGCT+AGG | + | chr6_2:47578411-47578430 | Msa0918740:CDS | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | + | chr6_2:47578425-47578444 | Msa0918740:CDS | 40.0% | |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | - | chr6_2:47578546-47578565 | None:intergenic | 40.0% |
| GCTGATAATATGGTTACTGC+AGG | + | chr6_2:47578805-47578824 | Msa0918740:CDS | 40.0% | |
| ! | AGGCCAGATTGGTAACTATA+TGG | + | chr6_2:47578825-47578844 | Msa0918740:CDS | 40.0% |
| !! | CTTGTTGGTGGATTCAATAC+AGG | - | chr6_2:47579124-47579143 | None:intergenic | 40.0% |
| TGAAACTGAACTCTTGTTGG+TGG | - | chr6_2:47579136-47579155 | None:intergenic | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | + | chr6_2:47579342-47579361 | Msa0918740:CDS | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | - | chr6_2:47579496-47579515 | None:intergenic | 40.0% | |
| CACCATGCATAGGGAATAAA+GGG | - | chr6_2:47579500-47579519 | None:intergenic | 40.0% | |
| TCACCATGCATAGGGAATAA+AGG | - | chr6_2:47579501-47579520 | None:intergenic | 40.0% | |
| GAATGTCTTCACCATGCATA+GGG | - | chr6_2:47579509-47579528 | None:intergenic | 40.0% | |
| TGAATGTCTTCACCATGCAT+AGG | - | chr6_2:47579510-47579529 | None:intergenic | 40.0% | |
| CATGGTGAAGACATTCATGA+TGG | + | chr6_2:47579513-47579532 | Msa0918740:CDS | 40.0% | |
| CTGCCCATAATCCCATTGTT+TGG | - | chr6_2:47578293-47578312 | None:intergenic | 45.0% | |
| GCAGCAGACAAAGTAGAACA+AGG | + | chr6_2:47578309-47578328 | Msa0918740:CDS | 45.0% | |
| GCAGACAAAGTAGAACAAGG+TGG | + | chr6_2:47578312-47578331 | Msa0918740:CDS | 45.0% | |
| ! | TAGGAGTGCACAATATCAGC+TGG | + | chr6_2:47579297-47579316 | Msa0918740:intron | 45.0% |
| CCATCCTAAGTGAGGGTTTA+TGG | - | chr6_2:47579349-47579368 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | + | chr6_2:47579346-47579365 | Msa0918740:CDS | 45.0% | |
| AACCCTCACTTAGGATGGAT+TGG | + | chr6_2:47579351-47579370 | Msa0918740:CDS | 45.0% | |
| GACCAATCCATCCTAAGTGA+GGG | - | chr6_2:47579356-47579375 | None:intergenic | 45.0% | |
| TGACCAATCCATCCTAAGTG+AGG | - | chr6_2:47579357-47579376 | None:intergenic | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | - | chr6_2:47579497-47579516 | None:intergenic | 45.0% | |
| CTCCCTTTATTCCCTATGCA+TGG | + | chr6_2:47579495-47579514 | Msa0918740:CDS | 45.0% | |
| CTGCCCATAATCCCATTGTT+TGG | - | chr6_2:47578293-47578312 | None:intergenic | 45.0% | |
| GCAGCAGACAAAGTAGAACA+AGG | + | chr6_2:47578309-47578328 | Msa0918740:CDS | 45.0% | |
| GCAGACAAAGTAGAACAAGG+TGG | + | chr6_2:47578312-47578331 | Msa0918740:CDS | 45.0% | |
| ! | TAGGAGTGCACAATATCAGC+TGG | + | chr6_2:47579297-47579316 | Msa0918740:intron | 45.0% |
| CCATCCTAAGTGAGGGTTTA+TGG | - | chr6_2:47579349-47579368 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | + | chr6_2:47579346-47579365 | Msa0918740:CDS | 45.0% | |
| AACCCTCACTTAGGATGGAT+TGG | + | chr6_2:47579351-47579370 | Msa0918740:CDS | 45.0% | |
| GACCAATCCATCCTAAGTGA+GGG | - | chr6_2:47579356-47579375 | None:intergenic | 45.0% | |
| TGACCAATCCATCCTAAGTG+AGG | - | chr6_2:47579357-47579376 | None:intergenic | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | - | chr6_2:47579497-47579516 | None:intergenic | 45.0% | |
| CTCCCTTTATTCCCTATGCA+TGG | + | chr6_2:47579495-47579514 | Msa0918740:CDS | 45.0% | |
| TGTTGTGTCTGCTGCTGTTG+TGG | - | chr6_2:47578263-47578282 | None:intergenic | 50.0% | |
| ATGGTTACTGCAGGCCAGAT+TGG | + | chr6_2:47578814-47578833 | Msa0918740:CDS | 50.0% | |
| GGATGTAGCAGCAGTCAAGT+TGG | + | chr6_2:47579318-47579337 | Msa0918740:CDS | 50.0% | |
| TGTTGTGTCTGCTGCTGTTG+TGG | - | chr6_2:47578263-47578282 | None:intergenic | 50.0% | |
| ATGGTTACTGCAGGCCAGAT+TGG | + | chr6_2:47578814-47578833 | Msa0918740:CDS | 50.0% | |
| GGATGTAGCAGCAGTCAAGT+TGG | + | chr6_2:47579318-47579337 | Msa0918740:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 47578245 | 47579554 | 47578245 | ID=Msa0918740;Name=Msa0918740 |
| chr6_2 | mRNA | 47578245 | 47579554 | 47578245 | ID=Msa0918740-mRNA-1;Parent=Msa0918740;Name=Msa0918740-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0|0|0|1|1|1|3|0|257 |
| chr6_2 | exon | 47578245 | 47578680 | 47578245 | ID=Msa0918740-mRNA-1:exon:7332;Parent=Msa0918740-mRNA-1 |
| chr6_2 | exon | 47578779 | 47578861 | 47578779 | ID=Msa0918740-mRNA-1:exon:7333;Parent=Msa0918740-mRNA-1 |
| chr6_2 | exon | 47579300 | 47579554 | 47579300 | ID=Msa0918740-mRNA-1:exon:7334;Parent=Msa0918740-mRNA-1 |
| chr6_2 | CDS | 47578245 | 47578680 | 47578245 | ID=Msa0918740-mRNA-1:cds;Parent=Msa0918740-mRNA-1 |
| chr6_2 | CDS | 47578779 | 47578861 | 47578779 | ID=Msa0918740-mRNA-1:cds;Parent=Msa0918740-mRNA-1 |
| chr6_2 | CDS | 47579300 | 47579554 | 47579300 | ID=Msa0918740-mRNA-1:cds;Parent=Msa0918740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
