Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333140 | XP_013465729.1 | 83.256 | 215 | 27 | 2 | 1 | 211 | 1 | 210 | 1.75e-120 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333140 | sp|Q9LKA5|MORF8_ARATH | 56.731 | 208 | 75 | 4 | 1 | 196 | 1 | 205 | 9.31e-71 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0333140 | Msa1231840 | 0.808647 | 2.794959e-50 | -8.615850e-47 |
| Msa0333140 | Msa1312520 | 0.803718 | 3.049003e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333140 | MtrunA17_Chr1g0148081 | 83.256 | 215 | 27 | 2 | 1 | 211 | 1 | 210 | 1.61e-124 | 357 |
| Msa0333140 | MtrunA17_Chr2g0316311 | 80.788 | 203 | 32 | 3 | 1 | 196 | 1 | 203 | 4.09e-106 | 311 |
| Msa0333140 | MtrunA17_Chr2g0316321 | 73.889 | 180 | 21 | 3 | 1 | 176 | 1 | 158 | 3.96e-76 | 228 |
| Msa0333140 | MtrunA17_Chr4g0067641 | 48.936 | 188 | 85 | 6 | 12 | 191 | 8 | 192 | 1.44e-49 | 163 |
| Msa0333140 | MtrunA17_Chr1g0166671 | 49.242 | 132 | 61 | 2 | 65 | 190 | 54 | 185 | 1.84e-37 | 131 |
| Msa0333140 | MtrunA17_Chr1g0187251 | 44.882 | 127 | 67 | 2 | 65 | 190 | 79 | 203 | 2.88e-34 | 123 |
| Msa0333140 | MtrunA17_Chr2g0280611 | 45.802 | 131 | 63 | 3 | 82 | 206 | 81 | 209 | 9.88e-33 | 119 |
| Msa0333140 | MtrunA17_Chr6g0467031 | 33.146 | 178 | 105 | 3 | 5 | 180 | 4 | 169 | 4.96e-21 | 87.4 |
| Msa0333140 | MtrunA17_Chr2g0277431 | 38.849 | 139 | 80 | 3 | 56 | 189 | 89 | 227 | 3.61e-19 | 86.3 |
| Msa0333140 | MtrunA17_Chr1g0198431 | 34.343 | 99 | 64 | 1 | 89 | 186 | 80 | 178 | 1.24e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333140 | AT3G15000.1 | 56.731 | 208 | 75 | 4 | 1 | 196 | 1 | 205 | 9.46e-72 | 225 |
| Msa0333140 | AT3G06790.2 | 47.917 | 192 | 85 | 5 | 12 | 191 | 8 | 196 | 5.93e-46 | 154 |
| Msa0333140 | AT1G72530.1 | 43.529 | 170 | 87 | 3 | 40 | 205 | 7 | 171 | 7.14e-46 | 152 |
| Msa0333140 | AT3G06790.1 | 47.396 | 192 | 86 | 5 | 12 | 191 | 8 | 196 | 2.65e-45 | 152 |
| Msa0333140 | AT1G72530.2 | 42.529 | 174 | 87 | 4 | 40 | 205 | 7 | 175 | 1.32e-43 | 146 |
| Msa0333140 | AT2G35240.1 | 40.187 | 214 | 105 | 7 | 17 | 211 | 17 | 226 | 8.62e-39 | 135 |
| Msa0333140 | AT1G32580.1 | 42.077 | 183 | 88 | 5 | 21 | 190 | 19 | 196 | 4.92e-38 | 133 |
| Msa0333140 | AT1G11430.1 | 46.565 | 131 | 69 | 1 | 82 | 211 | 81 | 211 | 6.08e-35 | 125 |
| Msa0333140 | AT1G53260.1 | 61.765 | 102 | 38 | 1 | 129 | 229 | 3 | 104 | 6.66e-35 | 126 |
| Msa0333140 | AT1G53260.2 | 61.765 | 102 | 38 | 1 | 129 | 229 | 3 | 104 | 1.07e-34 | 124 |
| Msa0333140 | AT4G20020.1 | 32.402 | 179 | 104 | 4 | 13 | 182 | 14 | 184 | 1.53e-20 | 90.1 |
| Msa0333140 | AT4G20020.2 | 32.402 | 179 | 104 | 4 | 13 | 182 | 14 | 184 | 2.64e-20 | 89.4 |
| Msa0333140 | AT5G44780.1 | 34.483 | 174 | 101 | 5 | 17 | 186 | 18 | 182 | 1.83e-18 | 84.7 |
Find 96 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGGTGAGCCCTTTATAAA+TGG | 0.228276 | 2_4:-50789233 | Msa0333140:intron |
| ACTAGACACTACTTTGCTTT+TGG | 0.255524 | 2_4:-50790142 | Msa0333140:CDS |
| GGAGCGTATCCGCCTTAATT+TGG | 0.266457 | 2_4:+50789112 | None:intergenic |
| AACTGCTTGCCCATTTATAA+AGG | 0.271403 | 2_4:+50789223 | None:intergenic |
| AAGAAGGGAGTTAAGGTTCT+AGG | 0.322215 | 2_4:+50790887 | None:intergenic |
| GCATACACTGCTCCAAATTA+AGG | 0.329919 | 2_4:-50789124 | Msa0333140:CDS |
| GGGAATGGAGGAAGAGGGAG+TGG | 0.331770 | 2_4:+50790841 | None:intergenic |
| GAAGCGTATCCAGCTTGATT+TGG | 0.345060 | 2_4:+50789040 | None:intergenic |
| TGCAGAACTTCCCAAAGTTC+GGG | 0.345305 | 2_4:-50789989 | Msa0333140:intron |
| GAAGGAGGGAATGGAGGAAG+AGG | 0.348327 | 2_4:+50790835 | None:intergenic |
| TTATTTGCCCATCCTGCATT+TGG | 0.348558 | 2_4:+50789016 | None:intergenic |
| GGAGCTTATCCGCCTTGATT+TGG | 0.349420 | 2_4:+50789064 | None:intergenic |
| TTGCAGAACTTCCCAAAGTT+CGG | 0.351964 | 2_4:-50789990 | Msa0333140:intron |
| GAGGCGTATCCAGCTTGATT+TGG | 0.355568 | 2_4:+50789088 | None:intergenic |
| AAAACATTCGCGGAGGTTAT+CGG | 0.356059 | 2_4:-50790581 | Msa0333140:CDS |
| GAATGACACGAGTGATGATT+TGG | 0.360460 | 2_4:+50790909 | None:intergenic |
| GGTCGAAGGTTAGGCCAGTT+AGG | 0.361192 | 2_4:+50790698 | None:intergenic |
| ATCGATAATTTCATCTCTAC+TGG | 0.363222 | 2_4:+50790613 | None:intergenic |
| GGGAGTGGTGGTTGTGGAGA+GGG | 0.363711 | 2_4:+50790856 | None:intergenic |
| AGGAAGAACCTCCCGAACTT+TGG | 0.368446 | 2_4:+50789978 | None:intergenic |
| GGAAGAGGGAGTGGTGGTTG+TGG | 0.371130 | 2_4:+50790850 | None:intergenic |
| GAGAATGTGGCGGGAGGTTA+CGG | 0.371212 | 2_4:+50790781 | None:intergenic |
| AATGTGGAGGAGAAAGATTA+TGG | 0.372409 | 2_4:-50789943 | Msa0333140:CDS |
| TCAACGATCAAAACCCTAAC+TGG | 0.373577 | 2_4:-50790712 | Msa0333140:CDS |
| GTATATACCTTTGAGTTTGT+AGG | 0.381707 | 2_4:+50790096 | None:intergenic |
| GGAAGAACCTCCCGAACTTT+GGG | 0.386278 | 2_4:+50789979 | None:intergenic |
| AACCTTCGACCTGTGATTGA+TGG | 0.386920 | 2_4:-50790686 | Msa0333140:CDS |
| GGAGAGGGAGCGAGAGAAGA+AGG | 0.392203 | 2_4:+50790871 | None:intergenic |
| TCCACATTCAAATAAGAATC+AGG | 0.404060 | 2_4:+50789958 | None:intergenic |
| AACCCACACCTCATGATACT+TGG | 0.405491 | 2_4:+50789190 | None:intergenic |
| TCATGATACTTGGGATCATA+TGG | 0.410750 | 2_4:+50789200 | None:intergenic |
| ACTGCTTGCCCATTTATAAA+GGG | 0.426292 | 2_4:+50789224 | None:intergenic |
| AGTATCATGAGGTGTGGGTT+AGG | 0.442915 | 2_4:-50789187 | Msa0333140:CDS |
| GCGAGAGAAGAAGGGAGTTA+AGG | 0.447428 | 2_4:+50790880 | None:intergenic |
| TCTCTACTGGGATCACCATC+AGG | 0.450160 | 2_4:+50790626 | None:intergenic |
| TCCTGATTCTTATTTGAATG+TGG | 0.453469 | 2_4:-50789959 | Msa0333140:CDS |
| GTCGAAGGTTAGGCCAGTTA+GGG | 0.456053 | 2_4:+50790699 | None:intergenic |
| GGAAGGGAGGAGAATGTGGC+GGG | 0.456123 | 2_4:+50790772 | None:intergenic |
| GTTGAGAGAGCGCGGAAGGA+AGG | 0.458865 | 2_4:+50790755 | None:intergenic |
| CGCTTCTCCAAATGCAGGAT+GGG | 0.465018 | 2_4:-50789023 | Msa0333140:CDS |
| ACGGCGAAGGAAGGAGGGAA+TGG | 0.465789 | 2_4:+50790826 | None:intergenic |
| GTGGCGGGAGGTTACGGCAG+CGG | 0.471625 | 2_4:+50790787 | None:intergenic |
| ACGGAGACGGCGAAGGAAGG+AGG | 0.472591 | 2_4:+50790820 | None:intergenic |
| AAGGAGGGAATGGAGGAAGA+GGG | 0.478892 | 2_4:+50790836 | None:intergenic |
| GTGCTAATGAAAGGCGAATA+CGG | 0.481988 | 2_4:-50789154 | Msa0333140:CDS |
| AGGGAGTGGTGGTTGTGGAG+AGG | 0.486391 | 2_4:+50790855 | None:intergenic |
| GCGTATCCAGCTTGATTTGG+AGG | 0.492294 | 2_4:+50789043 | None:intergenic |
| GAGAGGGAGCGAGAGAAGAA+GGG | 0.495426 | 2_4:+50790872 | None:intergenic |
| TAGGTGAGCCCTTTATAAAT+GGG | 0.499532 | 2_4:-50789232 | Msa0333140:CDS |
| CGGAGACGGCGAAGGAAGGA+GGG | 0.501376 | 2_4:+50790821 | None:intergenic |
| TTGAGAGAGCGCGGAAGGAA+GGG | 0.504905 | 2_4:+50790756 | None:intergenic |
| CAAGAGGACGGAGACGGCGA+AGG | 0.515520 | 2_4:+50790813 | None:intergenic |
| TCAATCACAGGTCGAAGGTT+AGG | 0.521587 | 2_4:+50790689 | None:intergenic |
| GCGTATCCAGCTTGATTTGG+AGG | 0.527325 | 2_4:+50789091 | None:intergenic |
| AGGACGGAGACGGCGAAGGA+AGG | 0.535192 | 2_4:+50790817 | None:intergenic |
| TACGCTCCTCCAAATCAAGC+TGG | 0.535601 | 2_4:-50789097 | Msa0333140:CDS |
| GCGGGAGGTTACGGCAGCGG+TGG | 0.536081 | 2_4:+50790790 | None:intergenic |
| ACCCACACCTCATGATACTT+GGG | 0.538686 | 2_4:+50789191 | None:intergenic |
| GGAAGGAAGGGAGGAGAATG+TGG | 0.550683 | 2_4:+50790768 | None:intergenic |
| ACAAGTTGAGAGAGCGCGGA+AGG | 0.553495 | 2_4:+50790751 | None:intergenic |
| TTGACAGTGAAGAAGAAGCT+AGG | 0.553712 | 2_4:-50790186 | Msa0333140:intron |
| AATGGAGGAAGAGGGAGTGG+TGG | 0.555690 | 2_4:+50790844 | None:intergenic |
| GCGAAGGAAGGAGGGAATGG+AGG | 0.559422 | 2_4:+50790829 | None:intergenic |
| CGGTGGCAAGAGGACGGAGA+CGG | 0.565568 | 2_4:+50790807 | None:intergenic |
| TAAGCTCCTCCAAATCAAGC+TGG | 0.567577 | 2_4:-50789049 | Msa0333140:CDS |
| ACAATGCTGGTGCTAATGAA+AGG | 0.573543 | 2_4:-50789163 | Msa0333140:CDS |
| ATCCCAAGTATCATGAGGTG+TGG | 0.576845 | 2_4:-50789193 | Msa0333140:CDS |
| ACGCTTCTCCAAATGCAGGA+TGG | 0.577354 | 2_4:-50789024 | Msa0333140:CDS |
| AGGGAGGAGAATGTGGCGGG+AGG | 0.581680 | 2_4:+50790775 | None:intergenic |
| GTTACGGCAGCGGTGGCAAG+AGG | 0.586719 | 2_4:+50790797 | None:intergenic |
| AAATCGCATCCATCAATCAC+AGG | 0.589848 | 2_4:+50790677 | None:intergenic |
| GGATACGCTTCTCCAAATGC+AGG | 0.592369 | 2_4:-50789028 | Msa0333140:CDS |
| GGATACGCCTCTCCAAATCA+AGG | 0.595138 | 2_4:-50789076 | Msa0333140:CDS |
| AGAGAGCGCGGAAGGAAGGG+AGG | 0.595700 | 2_4:+50790759 | None:intergenic |
| TGATTCTTATTTGAATGTGG+AGG | 0.596947 | 2_4:-50789956 | Msa0333140:CDS |
| GAGCTTTCCTACAAACTCAA+AGG | 0.597466 | 2_4:-50790103 | Msa0333140:intron |
| TTGATCGTTGAGGGAAGAGG+TGG | 0.599036 | 2_4:+50790724 | None:intergenic |
| TGGTTATATCAAAACATTCG+CGG | 0.601525 | 2_4:-50790591 | Msa0333140:CDS |
| TCGATAATTTCATCTCTACT+GGG | 0.602550 | 2_4:+50790614 | None:intergenic |
| CGGCAGCGGTGGCAAGAGGA+CGG | 0.607389 | 2_4:+50790801 | None:intergenic |
| TTATCCGCCTTGATTTGGAG+AGG | 0.610613 | 2_4:+50789069 | None:intergenic |
| TCCCAAGTATCATGAGGTGT+GGG | 0.617751 | 2_4:-50789192 | Msa0333140:CDS |
| AGTAGAGATGAAATTATCGA+TGG | 0.619578 | 2_4:-50790611 | Msa0333140:CDS |
| ATCCATCAATCACAGGTCGA+AGG | 0.620673 | 2_4:+50790684 | None:intergenic |
| GTGTGGGTTAGGAACAATGC+TGG | 0.624271 | 2_4:-50789176 | Msa0333140:CDS |
| TAGGACAAGTTGAGAGAGCG+CGG | 0.639044 | 2_4:+50790747 | None:intergenic |
| AGGAAGGGAGGAGAATGTGG+CGG | 0.646234 | 2_4:+50790771 | None:intergenic |
| GTGGAGGAGAAAGATTATGG+AGG | 0.656007 | 2_4:-50789940 | Msa0333140:intron |
| AGAACTTCCCAAAGTTCGGG+AGG | 0.669914 | 2_4:-50789986 | Msa0333140:CDS |
| TACACTGCTCCAAATTAAGG+CGG | 0.670770 | 2_4:-50789121 | Msa0333140:CDS |
| GTGGTTATGAAGAAGCCTGA+TGG | 0.671868 | 2_4:-50790641 | Msa0333140:CDS |
| ATATGATCCCAAGTATCATG+AGG | 0.680310 | 2_4:-50789198 | Msa0333140:CDS |
| TCGTTGAGGGAAGAGGTGGT+AGG | 0.684140 | 2_4:+50790728 | None:intergenic |
| TTATATCAAAACATTCGCGG+AGG | 0.700151 | 2_4:-50790588 | Msa0333140:CDS |
| TACGCCTCTCCAAATCAAGG+CGG | 0.748785 | 2_4:-50789073 | Msa0333140:CDS |
| CTAATGAAAGGCGAATACGG+CGG | 0.756274 | 2_4:-50789151 | Msa0333140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTCTTAAATTATTAC+CGG | + | chr2_4:50789612-50789631 | None:intergenic | 10.0% |
| !! | AAAGTTTAAAGAAAAAAATT+TGG | + | chr2_4:50789869-50789888 | None:intergenic | 10.0% |
| !!! | TAATTTTCTTAAATTATTAC+CGG | + | chr2_4:50789612-50789631 | None:intergenic | 10.0% |
| !! | AAAGTTTAAAGAAAAAAATT+TGG | + | chr2_4:50789869-50789888 | None:intergenic | 10.0% |
| !!! | TATATTTGATAATTTCTGTT+TGG | - | chr2_4:50789481-50789500 | Msa0333140:intron | 15.0% |
| !! | AAATATCATACAATATACTT+GGG | + | chr2_4:50790121-50790140 | None:intergenic | 15.0% |
| !! | TAAATATCATACAATATACT+TGG | + | chr2_4:50790122-50790141 | None:intergenic | 15.0% |
| !!! | TATATTTGATAATTTCTGTT+TGG | - | chr2_4:50789481-50789500 | Msa0333140:intron | 15.0% |
| !! | AAATATCATACAATATACTT+GGG | + | chr2_4:50790121-50790140 | None:intergenic | 15.0% |
| !! | TAAATATCATACAATATACT+TGG | + | chr2_4:50790122-50790141 | None:intergenic | 15.0% |
| !! | TTTGTATACTATACCATAAA+CGG | - | chr2_4:50789897-50789916 | Msa0333140:intron | 20.0% |
| !! | TACAATGAGTGATTATAATT+AGG | + | chr2_4:50790046-50790065 | None:intergenic | 20.0% |
| !! | CATTTGTCTATAAAACAATT+TGG | + | chr2_4:50790175-50790194 | None:intergenic | 20.0% |
| !!! | TATTTGAAATGACATAATAC+AGG | + | chr2_4:50790317-50790336 | None:intergenic | 20.0% |
| !! | AAAGGTTAATAACAAATGAT+TGG | + | chr2_4:50790496-50790515 | None:intergenic | 20.0% |
| !!! | AATCATTTGTTATTAACCTT+TGG | - | chr2_4:50790495-50790514 | Msa0333140:intron | 20.0% |
| !! | ATTGGAGTTATAGTATTATT+AGG | - | chr2_4:50790574-50790593 | Msa0333140:intron | 20.0% |
| !! | ACAAGAAATATTATATGCTA+TGG | + | chr2_4:50790629-50790648 | None:intergenic | 20.0% |
| !! | TTTGTATACTATACCATAAA+CGG | - | chr2_4:50789897-50789916 | Msa0333140:intron | 20.0% |
| !! | TACAATGAGTGATTATAATT+AGG | + | chr2_4:50790046-50790065 | None:intergenic | 20.0% |
| !! | CATTTGTCTATAAAACAATT+TGG | + | chr2_4:50790175-50790194 | None:intergenic | 20.0% |
| !!! | TATTTGAAATGACATAATAC+AGG | + | chr2_4:50790317-50790336 | None:intergenic | 20.0% |
| !! | AAAGGTTAATAACAAATGAT+TGG | + | chr2_4:50790496-50790515 | None:intergenic | 20.0% |
| !!! | AATCATTTGTTATTAACCTT+TGG | - | chr2_4:50790495-50790514 | Msa0333140:intron | 20.0% |
| !! | ATTGGAGTTATAGTATTATT+AGG | - | chr2_4:50790574-50790593 | Msa0333140:intron | 20.0% |
| !! | ACAAGAAATATTATATGCTA+TGG | + | chr2_4:50790629-50790648 | None:intergenic | 20.0% |
| !! | TTTTCTTAAATTATTACCGG+CGG | + | chr2_4:50789609-50789628 | None:intergenic | 25.0% |
| ! | TTCTAAATAATGTCTGTGAA+TGG | - | chr2_4:50789696-50789715 | Msa0333140:intron | 25.0% |
| !!! | GTTCTGCAAATTTTAAAAAC+AGG | + | chr2_4:50789932-50789951 | None:intergenic | 25.0% |
| ! | TTATAATCACTCATTGTAAG+TGG | - | chr2_4:50790048-50790067 | Msa0333140:intron | 25.0% |
| !! | GTTTTATAGACAAATGTTAG+TGG | - | chr2_4:50790179-50790198 | Msa0333140:CDS | 25.0% |
| !!! | ATGTTAGTGGTTAATTTGTT+AGG | - | chr2_4:50790192-50790211 | Msa0333140:intron | 25.0% |
| ! | AAGTTTAATAGAAAAGCAGT+TGG | - | chr2_4:50790350-50790369 | Msa0333140:intron | 25.0% |
| ! | AGTTTAATAGAAAAGCAGTT+GGG | - | chr2_4:50790351-50790370 | Msa0333140:intron | 25.0% |
| ! | TAGATTAAAAAGCAAACCAA+AGG | + | chr2_4:50790514-50790533 | None:intergenic | 25.0% |
| ! | GCATATGAACTGTTATATAT+TGG | - | chr2_4:50790556-50790575 | Msa0333140:intron | 25.0% |
| !! | TTTTCTTAAATTATTACCGG+CGG | + | chr2_4:50789609-50789628 | None:intergenic | 25.0% |
| ! | TTCTAAATAATGTCTGTGAA+TGG | - | chr2_4:50789696-50789715 | Msa0333140:intron | 25.0% |
| !!! | GTTCTGCAAATTTTAAAAAC+AGG | + | chr2_4:50789932-50789951 | None:intergenic | 25.0% |
| ! | TTATAATCACTCATTGTAAG+TGG | - | chr2_4:50790048-50790067 | Msa0333140:intron | 25.0% |
| !! | GTTTTATAGACAAATGTTAG+TGG | - | chr2_4:50790179-50790198 | Msa0333140:CDS | 25.0% |
| !!! | ATGTTAGTGGTTAATTTGTT+AGG | - | chr2_4:50790192-50790211 | Msa0333140:intron | 25.0% |
| ! | AAGTTTAATAGAAAAGCAGT+TGG | - | chr2_4:50790350-50790369 | Msa0333140:intron | 25.0% |
| ! | AGTTTAATAGAAAAGCAGTT+GGG | - | chr2_4:50790351-50790370 | Msa0333140:intron | 25.0% |
| ! | TAGATTAAAAAGCAAACCAA+AGG | + | chr2_4:50790514-50790533 | None:intergenic | 25.0% |
| ! | GCATATGAACTGTTATATAT+TGG | - | chr2_4:50790556-50790575 | Msa0333140:intron | 25.0% |
| TCGATAATTTCATCTCTACT+GGG | + | chr2_4:50789322-50789341 | None:intergenic | 30.0% | |
| ATCGATAATTTCATCTCTAC+TGG | + | chr2_4:50789323-50789342 | None:intergenic | 30.0% | |
| AGTAGAGATGAAATTATCGA+TGG | - | chr2_4:50789322-50789341 | Msa0333140:intron | 30.0% | |
| TGGTTATATCAAAACATTCG+CGG | - | chr2_4:50789342-50789361 | Msa0333140:intron | 30.0% | |
| AATAGCACCAACATTTCTAA+TGG | + | chr2_4:50789674-50789693 | None:intergenic | 30.0% | |
| AAATAATGTCTGTGAATGGA+TGG | - | chr2_4:50789700-50789719 | Msa0333140:intron | 30.0% | |
| ! | GTATATACCTTTGAGTTTGT+AGG | + | chr2_4:50789840-50789859 | None:intergenic | 30.0% |
| CAGGAAATTAAAACCGTTTA+TGG | + | chr2_4:50789913-50789932 | None:intergenic | 30.0% | |
| ! | TCCTGATTCTTATTTGAATG+TGG | - | chr2_4:50789974-50789993 | Msa0333140:CDS | 30.0% |
| TCCACATTCAAATAAGAATC+AGG | + | chr2_4:50789978-50789997 | None:intergenic | 30.0% | |
| ! | TGATTCTTATTTGAATGTGG+AGG | - | chr2_4:50789977-50789996 | Msa0333140:CDS | 30.0% |
| AGTGATTATAATTAGGAGCT+AGG | + | chr2_4:50790039-50790058 | None:intergenic | 30.0% | |
| ATAACTTCAACTGTGTGTTT+AGG | - | chr2_4:50790076-50790095 | Msa0333140:intron | 30.0% | |
| ACAATATACTTGGGATCATA+AGG | + | chr2_4:50790112-50790131 | None:intergenic | 30.0% | |
| GATGTAGTTGGACTAATATA+CGG | - | chr2_4:50790278-50790297 | Msa0333140:intron | 30.0% | |
| GTTTAATAGAAAAGCAGTTG+GGG | - | chr2_4:50790352-50790371 | Msa0333140:intron | 30.0% | |
| !! | TTACAAAACATCGATTCACA+GGG | + | chr2_4:50790421-50790440 | None:intergenic | 30.0% |
| GGAGTTATAGTATTATTAGG+TGG | - | chr2_4:50790577-50790596 | Msa0333140:intron | 30.0% | |
| AAGCTACATAACATGATTCT+TGG | - | chr2_4:50790654-50790673 | Msa0333140:CDS | 30.0% | |
| TCGATAATTTCATCTCTACT+GGG | + | chr2_4:50789322-50789341 | None:intergenic | 30.0% | |
| ATCGATAATTTCATCTCTAC+TGG | + | chr2_4:50789323-50789342 | None:intergenic | 30.0% | |
| AGTAGAGATGAAATTATCGA+TGG | - | chr2_4:50789322-50789341 | Msa0333140:intron | 30.0% | |
| TGGTTATATCAAAACATTCG+CGG | - | chr2_4:50789342-50789361 | Msa0333140:intron | 30.0% | |
| AATAGCACCAACATTTCTAA+TGG | + | chr2_4:50789674-50789693 | None:intergenic | 30.0% | |
| AAATAATGTCTGTGAATGGA+TGG | - | chr2_4:50789700-50789719 | Msa0333140:intron | 30.0% | |
| ! | GTATATACCTTTGAGTTTGT+AGG | + | chr2_4:50789840-50789859 | None:intergenic | 30.0% |
| CAGGAAATTAAAACCGTTTA+TGG | + | chr2_4:50789913-50789932 | None:intergenic | 30.0% | |
| ! | TCCTGATTCTTATTTGAATG+TGG | - | chr2_4:50789974-50789993 | Msa0333140:CDS | 30.0% |
| TCCACATTCAAATAAGAATC+AGG | + | chr2_4:50789978-50789997 | None:intergenic | 30.0% | |
| ! | TGATTCTTATTTGAATGTGG+AGG | - | chr2_4:50789977-50789996 | Msa0333140:CDS | 30.0% |
| AGTGATTATAATTAGGAGCT+AGG | + | chr2_4:50790039-50790058 | None:intergenic | 30.0% | |
| ATAACTTCAACTGTGTGTTT+AGG | - | chr2_4:50790076-50790095 | Msa0333140:intron | 30.0% | |
| ACAATATACTTGGGATCATA+AGG | + | chr2_4:50790112-50790131 | None:intergenic | 30.0% | |
| GATGTAGTTGGACTAATATA+CGG | - | chr2_4:50790278-50790297 | Msa0333140:intron | 30.0% | |
| GTTTAATAGAAAAGCAGTTG+GGG | - | chr2_4:50790352-50790371 | Msa0333140:intron | 30.0% | |
| !! | TTACAAAACATCGATTCACA+GGG | + | chr2_4:50790421-50790440 | None:intergenic | 30.0% |
| GGAGTTATAGTATTATTAGG+TGG | - | chr2_4:50790577-50790596 | Msa0333140:intron | 30.0% | |
| AAGCTACATAACATGATTCT+TGG | - | chr2_4:50790654-50790673 | Msa0333140:CDS | 30.0% | |
| TTATATCAAAACATTCGCGG+AGG | - | chr2_4:50789345-50789364 | Msa0333140:intron | 35.0% | |
| ! | ATGGATGGTTGATTGTGTTT+TGG | - | chr2_4:50789715-50789734 | Msa0333140:intron | 35.0% |
| ! | ACTAGACACTACTTTGCTTT+TGG | - | chr2_4:50789791-50789810 | Msa0333140:intron | 35.0% |
| AATGTGGAGGAGAAAGATTA+TGG | - | chr2_4:50789990-50790009 | Msa0333140:intron | 35.0% | |
| TATAATTAGGAGCTAGGTGA+TGG | + | chr2_4:50790033-50790052 | None:intergenic | 35.0% | |
| GTACTTGATTACGATGTAGT+TGG | - | chr2_4:50790266-50790285 | Msa0333140:intron | 35.0% | |
| !! | GTTACAAAACATCGATTCAC+AGG | + | chr2_4:50790422-50790441 | None:intergenic | 35.0% |
| CAACACTGAATGTACTACAA+AGG | + | chr2_4:50790444-50790463 | None:intergenic | 35.0% | |
| !! | TTGGTAAAATGACTAGTCTC+TGG | + | chr2_4:50790477-50790496 | None:intergenic | 35.0% |
| CTACATAACATGATTCTTGG+TGG | - | chr2_4:50790657-50790676 | Msa0333140:CDS | 35.0% | |
| TAGGTGAGCCCTTTATAAAT+GGG | - | chr2_4:50790701-50790720 | Msa0333140:CDS | 35.0% | |
| ACTGCTTGCCCATTTATAAA+GGG | + | chr2_4:50790712-50790731 | None:intergenic | 35.0% | |
| AACTGCTTGCCCATTTATAA+AGG | + | chr2_4:50790713-50790732 | None:intergenic | 35.0% | |
| TCATGATACTTGGGATCATA+TGG | + | chr2_4:50790736-50790755 | None:intergenic | 35.0% | |
| ATATGATCCCAAGTATCATG+AGG | - | chr2_4:50790735-50790754 | Msa0333140:CDS | 35.0% | |
| TTATATCAAAACATTCGCGG+AGG | - | chr2_4:50789345-50789364 | Msa0333140:intron | 35.0% | |
| ! | ATGGATGGTTGATTGTGTTT+TGG | - | chr2_4:50789715-50789734 | Msa0333140:intron | 35.0% |
| ! | ACTAGACACTACTTTGCTTT+TGG | - | chr2_4:50789791-50789810 | Msa0333140:intron | 35.0% |
| AATGTGGAGGAGAAAGATTA+TGG | - | chr2_4:50789990-50790009 | Msa0333140:intron | 35.0% | |
| TATAATTAGGAGCTAGGTGA+TGG | + | chr2_4:50790033-50790052 | None:intergenic | 35.0% | |
| GTACTTGATTACGATGTAGT+TGG | - | chr2_4:50790266-50790285 | Msa0333140:intron | 35.0% | |
| !! | GTTACAAAACATCGATTCAC+AGG | + | chr2_4:50790422-50790441 | None:intergenic | 35.0% |
| CAACACTGAATGTACTACAA+AGG | + | chr2_4:50790444-50790463 | None:intergenic | 35.0% | |
| !! | TTGGTAAAATGACTAGTCTC+TGG | + | chr2_4:50790477-50790496 | None:intergenic | 35.0% |
| CTACATAACATGATTCTTGG+TGG | - | chr2_4:50790657-50790676 | Msa0333140:CDS | 35.0% | |
| TAGGTGAGCCCTTTATAAAT+GGG | - | chr2_4:50790701-50790720 | Msa0333140:CDS | 35.0% | |
| ACTGCTTGCCCATTTATAAA+GGG | + | chr2_4:50790712-50790731 | None:intergenic | 35.0% | |
| AACTGCTTGCCCATTTATAA+AGG | + | chr2_4:50790713-50790732 | None:intergenic | 35.0% | |
| TCATGATACTTGGGATCATA+TGG | + | chr2_4:50790736-50790755 | None:intergenic | 35.0% | |
| ATATGATCCCAAGTATCATG+AGG | - | chr2_4:50790735-50790754 | Msa0333140:CDS | 35.0% | |
| GAATGACACGAGTGATGATT+TGG | + | chr2_4:50789027-50789046 | None:intergenic | 40.0% | |
| AAGAAGGGAGTTAAGGTTCT+AGG | + | chr2_4:50789049-50789068 | None:intergenic | 40.0% | |
| !! | GTTAGGGTTTTGATCGTTGA+GGG | + | chr2_4:50789221-50789240 | None:intergenic | 40.0% |
| !! | AGTTAGGGTTTTGATCGTTG+AGG | + | chr2_4:50789222-50789241 | None:intergenic | 40.0% |
| TCAACGATCAAAACCCTAAC+TGG | - | chr2_4:50789221-50789240 | Msa0333140:CDS | 40.0% | |
| AAATCGCATCCATCAATCAC+AGG | + | chr2_4:50789259-50789278 | None:intergenic | 40.0% | |
| ! | ATGGATGCGATTTTGAACAC+TGG | - | chr2_4:50789266-50789285 | Msa0333140:intron | 40.0% |
| AAAACATTCGCGGAGGTTAT+CGG | - | chr2_4:50789352-50789371 | Msa0333140:intron | 40.0% | |
| !! | CGTTTCTCTGATGTTGCTTT+AGG | - | chr2_4:50789423-50789442 | Msa0333140:intron | 40.0% |
| TTAAATTATTACCGGCGGTG+CGG | + | chr2_4:50789604-50789623 | None:intergenic | 40.0% | |
| ATTTCTAATGGAACGCGTGT+CGG | + | chr2_4:50789662-50789681 | None:intergenic | 40.0% | |
| ACGCGTTCCATTAGAAATGT+TGG | - | chr2_4:50789664-50789683 | Msa0333140:intron | 40.0% | |
| TTGACAGTGAAGAAGAAGCT+AGG | - | chr2_4:50789747-50789766 | Msa0333140:intron | 40.0% | |
| GAGCTTTCCTACAAACTCAA+AGG | - | chr2_4:50789830-50789849 | Msa0333140:intron | 40.0% | |
| TTGCAGAACTTCCCAAAGTT+CGG | - | chr2_4:50789943-50789962 | Msa0333140:CDS | 40.0% | |
| !! | TGGTTAATTTGTTAGGCGAG+CGG | - | chr2_4:50790199-50790218 | Msa0333140:intron | 40.0% |
| AGTTGGACTAATATACGGTG+TGG | - | chr2_4:50790283-50790302 | Msa0333140:intron | 40.0% | |
| ! | TTCTTTGTTTCCCTCTCACT+AGG | - | chr2_4:50790682-50790701 | Msa0333140:CDS | 40.0% |
| CTAGGTGAGCCCTTTATAAA+TGG | - | chr2_4:50790700-50790719 | Msa0333140:CDS | 40.0% | |
| ! | ACAATGCTGGTGCTAATGAA+AGG | - | chr2_4:50790770-50790789 | Msa0333140:CDS | 40.0% |
| GTGCTAATGAAAGGCGAATA+CGG | - | chr2_4:50790779-50790798 | Msa0333140:CDS | 40.0% | |
| GCATACACTGCTCCAAATTA+AGG | - | chr2_4:50790809-50790828 | Msa0333140:CDS | 40.0% | |
| TACACTGCTCCAAATTAAGG+CGG | - | chr2_4:50790812-50790831 | Msa0333140:CDS | 40.0% | |
| TTATTTGCCCATCCTGCATT+TGG | + | chr2_4:50790920-50790939 | None:intergenic | 40.0% | |
| GAATGACACGAGTGATGATT+TGG | + | chr2_4:50789027-50789046 | None:intergenic | 40.0% | |
| AAGAAGGGAGTTAAGGTTCT+AGG | + | chr2_4:50789049-50789068 | None:intergenic | 40.0% | |
| !! | GTTAGGGTTTTGATCGTTGA+GGG | + | chr2_4:50789221-50789240 | None:intergenic | 40.0% |
| !! | AGTTAGGGTTTTGATCGTTG+AGG | + | chr2_4:50789222-50789241 | None:intergenic | 40.0% |
| TCAACGATCAAAACCCTAAC+TGG | - | chr2_4:50789221-50789240 | Msa0333140:CDS | 40.0% | |
| AAATCGCATCCATCAATCAC+AGG | + | chr2_4:50789259-50789278 | None:intergenic | 40.0% | |
| ! | ATGGATGCGATTTTGAACAC+TGG | - | chr2_4:50789266-50789285 | Msa0333140:intron | 40.0% |
| AAAACATTCGCGGAGGTTAT+CGG | - | chr2_4:50789352-50789371 | Msa0333140:intron | 40.0% | |
| !! | CGTTTCTCTGATGTTGCTTT+AGG | - | chr2_4:50789423-50789442 | Msa0333140:intron | 40.0% |
| TTAAATTATTACCGGCGGTG+CGG | + | chr2_4:50789604-50789623 | None:intergenic | 40.0% | |
| ATTTCTAATGGAACGCGTGT+CGG | + | chr2_4:50789662-50789681 | None:intergenic | 40.0% | |
| ACGCGTTCCATTAGAAATGT+TGG | - | chr2_4:50789664-50789683 | Msa0333140:intron | 40.0% | |
| TTGACAGTGAAGAAGAAGCT+AGG | - | chr2_4:50789747-50789766 | Msa0333140:intron | 40.0% | |
| GAGCTTTCCTACAAACTCAA+AGG | - | chr2_4:50789830-50789849 | Msa0333140:intron | 40.0% | |
| TTGCAGAACTTCCCAAAGTT+CGG | - | chr2_4:50789943-50789962 | Msa0333140:CDS | 40.0% | |
| !! | TGGTTAATTTGTTAGGCGAG+CGG | - | chr2_4:50790199-50790218 | Msa0333140:intron | 40.0% |
| AGTTGGACTAATATACGGTG+TGG | - | chr2_4:50790283-50790302 | Msa0333140:intron | 40.0% | |
| ! | TTCTTTGTTTCCCTCTCACT+AGG | - | chr2_4:50790682-50790701 | Msa0333140:CDS | 40.0% |
| CTAGGTGAGCCCTTTATAAA+TGG | - | chr2_4:50790700-50790719 | Msa0333140:CDS | 40.0% | |
| ! | ACAATGCTGGTGCTAATGAA+AGG | - | chr2_4:50790770-50790789 | Msa0333140:CDS | 40.0% |
| GTGCTAATGAAAGGCGAATA+CGG | - | chr2_4:50790779-50790798 | Msa0333140:CDS | 40.0% | |
| GCATACACTGCTCCAAATTA+AGG | - | chr2_4:50790809-50790828 | Msa0333140:CDS | 40.0% | |
| TACACTGCTCCAAATTAAGG+CGG | - | chr2_4:50790812-50790831 | Msa0333140:CDS | 40.0% | |
| TTATTTGCCCATCCTGCATT+TGG | + | chr2_4:50790920-50790939 | None:intergenic | 40.0% | |
| !! | GTTTTGATCGTTGAGGGAAG+AGG | + | chr2_4:50789215-50789234 | None:intergenic | 45.0% |
| TCAATCACAGGTCGAAGGTT+AGG | + | chr2_4:50789247-50789266 | None:intergenic | 45.0% | |
| AACCTTCGACCTGTGATTGA+TGG | - | chr2_4:50789247-50789266 | Msa0333140:intron | 45.0% | |
| ATCCATCAATCACAGGTCGA+AGG | + | chr2_4:50789252-50789271 | None:intergenic | 45.0% | |
| GTGGTTATGAAGAAGCCTGA+TGG | - | chr2_4:50789292-50789311 | Msa0333140:intron | 45.0% | |
| TCTAGTGGCAGTGTAGTGTA+TGG | + | chr2_4:50789573-50789592 | None:intergenic | 45.0% | |
| TGCAGAACTTCCCAAAGTTC+GGG | - | chr2_4:50789944-50789963 | Msa0333140:CDS | 45.0% | |
| GTGGAGGAGAAAGATTATGG+AGG | - | chr2_4:50789993-50790012 | Msa0333140:intron | 45.0% | |
| TGGGATCATAAGGAACTGCT+TGG | + | chr2_4:50790102-50790121 | None:intergenic | 45.0% | |
| AGCGGAAAATGTTAGTCGCA+GGG | - | chr2_4:50790217-50790236 | Msa0333140:intron | 45.0% | |
| !! | AAAACATCGATTCACAGGGC+GGG | + | chr2_4:50790417-50790436 | None:intergenic | 45.0% |
| !! | CAAAACATCGATTCACAGGG+CGG | + | chr2_4:50790418-50790437 | None:intergenic | 45.0% |
| ATCCCAAGTATCATGAGGTG+TGG | - | chr2_4:50790740-50790759 | Msa0333140:CDS | 45.0% | |
| TCCCAAGTATCATGAGGTGT+GGG | - | chr2_4:50790741-50790760 | Msa0333140:CDS | 45.0% | |
| ACCCACACCTCATGATACTT+GGG | + | chr2_4:50790745-50790764 | None:intergenic | 45.0% | |
| AACCCACACCTCATGATACT+TGG | + | chr2_4:50790746-50790765 | None:intergenic | 45.0% | |
| AGTATCATGAGGTGTGGGTT+AGG | - | chr2_4:50790746-50790765 | Msa0333140:CDS | 45.0% | |
| CTAATGAAAGGCGAATACGG+CGG | - | chr2_4:50790782-50790801 | Msa0333140:CDS | 45.0% | |
| !! | TTATCCGCCTTGATTTGGAG+AGG | + | chr2_4:50790867-50790886 | None:intergenic | 45.0% |
| TAAGCTCCTCCAAATCAAGC+TGG | - | chr2_4:50790884-50790903 | Msa0333140:CDS | 45.0% | |
| GAAGCGTATCCAGCTTGATT+TGG | + | chr2_4:50790896-50790915 | None:intergenic | 45.0% | |
| !! | GTTTTGATCGTTGAGGGAAG+AGG | + | chr2_4:50789215-50789234 | None:intergenic | 45.0% |
| TCAATCACAGGTCGAAGGTT+AGG | + | chr2_4:50789247-50789266 | None:intergenic | 45.0% | |
| AACCTTCGACCTGTGATTGA+TGG | - | chr2_4:50789247-50789266 | Msa0333140:intron | 45.0% | |
| ATCCATCAATCACAGGTCGA+AGG | + | chr2_4:50789252-50789271 | None:intergenic | 45.0% | |
| GTGGTTATGAAGAAGCCTGA+TGG | - | chr2_4:50789292-50789311 | Msa0333140:intron | 45.0% | |
| TCTAGTGGCAGTGTAGTGTA+TGG | + | chr2_4:50789573-50789592 | None:intergenic | 45.0% | |
| TGCAGAACTTCCCAAAGTTC+GGG | - | chr2_4:50789944-50789963 | Msa0333140:CDS | 45.0% | |
| GTGGAGGAGAAAGATTATGG+AGG | - | chr2_4:50789993-50790012 | Msa0333140:intron | 45.0% | |
| TGGGATCATAAGGAACTGCT+TGG | + | chr2_4:50790102-50790121 | None:intergenic | 45.0% | |
| AGCGGAAAATGTTAGTCGCA+GGG | - | chr2_4:50790217-50790236 | Msa0333140:intron | 45.0% | |
| !! | AAAACATCGATTCACAGGGC+GGG | + | chr2_4:50790417-50790436 | None:intergenic | 45.0% |
| !! | CAAAACATCGATTCACAGGG+CGG | + | chr2_4:50790418-50790437 | None:intergenic | 45.0% |
| ATCCCAAGTATCATGAGGTG+TGG | - | chr2_4:50790740-50790759 | Msa0333140:CDS | 45.0% | |
| TCCCAAGTATCATGAGGTGT+GGG | - | chr2_4:50790741-50790760 | Msa0333140:CDS | 45.0% | |
| ACCCACACCTCATGATACTT+GGG | + | chr2_4:50790745-50790764 | None:intergenic | 45.0% | |
| AACCCACACCTCATGATACT+TGG | + | chr2_4:50790746-50790765 | None:intergenic | 45.0% | |
| AGTATCATGAGGTGTGGGTT+AGG | - | chr2_4:50790746-50790765 | Msa0333140:CDS | 45.0% | |
| CTAATGAAAGGCGAATACGG+CGG | - | chr2_4:50790782-50790801 | Msa0333140:CDS | 45.0% | |
| !! | TTATCCGCCTTGATTTGGAG+AGG | + | chr2_4:50790867-50790886 | None:intergenic | 45.0% |
| TAAGCTCCTCCAAATCAAGC+TGG | - | chr2_4:50790884-50790903 | Msa0333140:CDS | 45.0% | |
| GAAGCGTATCCAGCTTGATT+TGG | + | chr2_4:50790896-50790915 | None:intergenic | 45.0% | |
| GCGAGAGAAGAAGGGAGTTA+AGG | + | chr2_4:50789056-50789075 | None:intergenic | 50.0% | |
| AAGGAGGGAATGGAGGAAGA+GGG | + | chr2_4:50789100-50789119 | None:intergenic | 50.0% | |
| ! | TAGGACAAGTTGAGAGAGCG+CGG | + | chr2_4:50789189-50789208 | None:intergenic | 50.0% |
| TTGATCGTTGAGGGAAGAGG+TGG | + | chr2_4:50789212-50789231 | None:intergenic | 50.0% | |
| GTCGAAGGTTAGGCCAGTTA+GGG | + | chr2_4:50789237-50789256 | None:intergenic | 50.0% | |
| !!! | CGATTTTGAACACTGGCTCG+TGG | - | chr2_4:50789273-50789292 | Msa0333140:intron | 50.0% |
| TCTCTACTGGGATCACCATC+AGG | + | chr2_4:50789310-50789329 | None:intergenic | 50.0% | |
| GGTGCGGATCTCATATCTAG+TGG | + | chr2_4:50789588-50789607 | None:intergenic | 50.0% | |
| AGAACTTCCCAAAGTTCGGG+AGG | - | chr2_4:50789947-50789966 | Msa0333140:CDS | 50.0% | |
| GGAAGAACCTCCCGAACTTT+GGG | + | chr2_4:50789957-50789976 | None:intergenic | 50.0% | |
| AGGAAGAACCTCCCGAACTT+TGG | + | chr2_4:50789958-50789977 | None:intergenic | 50.0% | |
| GAGCGGAAAATGTTAGTCGC+AGG | - | chr2_4:50790216-50790235 | Msa0333140:intron | 50.0% | |
| AGAAAAGCAGTTGGGGCCTT+TGG | - | chr2_4:50790359-50790378 | Msa0333140:intron | 50.0% | |
| GATGTGTTCTACAGGAGCCA+GGG | + | chr2_4:50790385-50790404 | None:intergenic | 50.0% | |
| GGATGGACGATGTGTTCTAC+AGG | + | chr2_4:50790393-50790412 | None:intergenic | 50.0% | |
| AAAGGGCTCACCTAGTGAGA+GGG | + | chr2_4:50790695-50790714 | None:intergenic | 50.0% | |
| TAAAGGGCTCACCTAGTGAG+AGG | + | chr2_4:50790696-50790715 | None:intergenic | 50.0% | |
| !! | GTGTGGGTTAGGAACAATGC+TGG | - | chr2_4:50790757-50790776 | Msa0333140:CDS | 50.0% |
| GGAGCGTATCCGCCTTAATT+TGG | + | chr2_4:50790824-50790843 | None:intergenic | 50.0% | |
| TACGCTCCTCCAAATCAAGC+TGG | - | chr2_4:50790836-50790855 | Msa0333140:CDS | 50.0% | |
| !! | GCGTATCCAGCTTGATTTGG+AGG | + | chr2_4:50790845-50790864 | None:intergenic | 50.0% |
| GAGGCGTATCCAGCTTGATT+TGG | + | chr2_4:50790848-50790867 | None:intergenic | 50.0% | |
| GGATACGCCTCTCCAAATCA+AGG | - | chr2_4:50790857-50790876 | Msa0333140:CDS | 50.0% | |
| TACGCCTCTCCAAATCAAGG+CGG | - | chr2_4:50790860-50790879 | Msa0333140:CDS | 50.0% | |
| GGAGCTTATCCGCCTTGATT+TGG | + | chr2_4:50790872-50790891 | None:intergenic | 50.0% | |
| !! | GCGTATCCAGCTTGATTTGG+AGG | + | chr2_4:50790845-50790864 | None:intergenic | 50.0% |
| GGATACGCTTCTCCAAATGC+AGG | - | chr2_4:50790905-50790924 | Msa0333140:CDS | 50.0% | |
| ACGCTTCTCCAAATGCAGGA+TGG | - | chr2_4:50790909-50790928 | Msa0333140:CDS | 50.0% | |
| CGCTTCTCCAAATGCAGGAT+GGG | - | chr2_4:50790910-50790929 | Msa0333140:CDS | 50.0% | |
| GCGAGAGAAGAAGGGAGTTA+AGG | + | chr2_4:50789056-50789075 | None:intergenic | 50.0% | |
| AAGGAGGGAATGGAGGAAGA+GGG | + | chr2_4:50789100-50789119 | None:intergenic | 50.0% | |
| ! | TAGGACAAGTTGAGAGAGCG+CGG | + | chr2_4:50789189-50789208 | None:intergenic | 50.0% |
| TTGATCGTTGAGGGAAGAGG+TGG | + | chr2_4:50789212-50789231 | None:intergenic | 50.0% | |
| GTCGAAGGTTAGGCCAGTTA+GGG | + | chr2_4:50789237-50789256 | None:intergenic | 50.0% | |
| !!! | CGATTTTGAACACTGGCTCG+TGG | - | chr2_4:50789273-50789292 | Msa0333140:intron | 50.0% |
| TCTCTACTGGGATCACCATC+AGG | + | chr2_4:50789310-50789329 | None:intergenic | 50.0% | |
| GGTGCGGATCTCATATCTAG+TGG | + | chr2_4:50789588-50789607 | None:intergenic | 50.0% | |
| AGAACTTCCCAAAGTTCGGG+AGG | - | chr2_4:50789947-50789966 | Msa0333140:CDS | 50.0% | |
| GGAAGAACCTCCCGAACTTT+GGG | + | chr2_4:50789957-50789976 | None:intergenic | 50.0% | |
| AGGAAGAACCTCCCGAACTT+TGG | + | chr2_4:50789958-50789977 | None:intergenic | 50.0% | |
| GAGCGGAAAATGTTAGTCGC+AGG | - | chr2_4:50790216-50790235 | Msa0333140:intron | 50.0% | |
| AGAAAAGCAGTTGGGGCCTT+TGG | - | chr2_4:50790359-50790378 | Msa0333140:intron | 50.0% | |
| GATGTGTTCTACAGGAGCCA+GGG | + | chr2_4:50790385-50790404 | None:intergenic | 50.0% | |
| GGATGGACGATGTGTTCTAC+AGG | + | chr2_4:50790393-50790412 | None:intergenic | 50.0% | |
| AAAGGGCTCACCTAGTGAGA+GGG | + | chr2_4:50790695-50790714 | None:intergenic | 50.0% | |
| TAAAGGGCTCACCTAGTGAG+AGG | + | chr2_4:50790696-50790715 | None:intergenic | 50.0% | |
| !! | GTGTGGGTTAGGAACAATGC+TGG | - | chr2_4:50790757-50790776 | Msa0333140:CDS | 50.0% |
| GGAGCGTATCCGCCTTAATT+TGG | + | chr2_4:50790824-50790843 | None:intergenic | 50.0% | |
| TACGCTCCTCCAAATCAAGC+TGG | - | chr2_4:50790836-50790855 | Msa0333140:CDS | 50.0% | |
| !! | GCGTATCCAGCTTGATTTGG+AGG | + | chr2_4:50790845-50790864 | None:intergenic | 50.0% |
| GAGGCGTATCCAGCTTGATT+TGG | + | chr2_4:50790848-50790867 | None:intergenic | 50.0% | |
| GGATACGCCTCTCCAAATCA+AGG | - | chr2_4:50790857-50790876 | Msa0333140:CDS | 50.0% | |
| TACGCCTCTCCAAATCAAGG+CGG | - | chr2_4:50790860-50790879 | Msa0333140:CDS | 50.0% | |
| GGAGCTTATCCGCCTTGATT+TGG | + | chr2_4:50790872-50790891 | None:intergenic | 50.0% | |
| !! | GCGTATCCAGCTTGATTTGG+AGG | + | chr2_4:50790845-50790864 | None:intergenic | 50.0% |
| GGATACGCTTCTCCAAATGC+AGG | - | chr2_4:50790905-50790924 | Msa0333140:CDS | 50.0% | |
| ACGCTTCTCCAAATGCAGGA+TGG | - | chr2_4:50790909-50790928 | Msa0333140:CDS | 50.0% | |
| CGCTTCTCCAAATGCAGGAT+GGG | - | chr2_4:50790910-50790929 | Msa0333140:CDS | 50.0% | |
| GAGAGGGAGCGAGAGAAGAA+GGG | + | chr2_4:50789064-50789083 | None:intergenic | 55.0% | |
| AATGGAGGAAGAGGGAGTGG+TGG | + | chr2_4:50789092-50789111 | None:intergenic | 55.0% | |
| GAAGGAGGGAATGGAGGAAG+AGG | + | chr2_4:50789101-50789120 | None:intergenic | 55.0% | |
| ! | GAGAATGTGGCGGGAGGTTA+CGG | + | chr2_4:50789155-50789174 | None:intergenic | 55.0% |
| AGGAAGGGAGGAGAATGTGG+CGG | + | chr2_4:50789165-50789184 | None:intergenic | 55.0% | |
| GGAAGGAAGGGAGGAGAATG+TGG | + | chr2_4:50789168-50789187 | None:intergenic | 55.0% | |
| ! | TTGAGAGAGCGCGGAAGGAA+GGG | + | chr2_4:50789180-50789199 | None:intergenic | 55.0% |
| ! | ACAAGTTGAGAGAGCGCGGA+AGG | + | chr2_4:50789185-50789204 | None:intergenic | 55.0% |
| TCGTTGAGGGAAGAGGTGGT+AGG | + | chr2_4:50789208-50789227 | None:intergenic | 55.0% | |
| GGTCGAAGGTTAGGCCAGTT+AGG | + | chr2_4:50789238-50789257 | None:intergenic | 55.0% | |
| AGATATGAGATCCGCACCGC+CGG | - | chr2_4:50789590-50789609 | Msa0333140:intron | 55.0% | |
| CGATGTGTTCTACAGGAGCC+AGG | + | chr2_4:50790386-50790405 | None:intergenic | 55.0% | |
| GAGAGGGAGCGAGAGAAGAA+GGG | + | chr2_4:50789064-50789083 | None:intergenic | 55.0% | |
| AATGGAGGAAGAGGGAGTGG+TGG | + | chr2_4:50789092-50789111 | None:intergenic | 55.0% | |
| GAAGGAGGGAATGGAGGAAG+AGG | + | chr2_4:50789101-50789120 | None:intergenic | 55.0% | |
| ! | GAGAATGTGGCGGGAGGTTA+CGG | + | chr2_4:50789155-50789174 | None:intergenic | 55.0% |
| AGGAAGGGAGGAGAATGTGG+CGG | + | chr2_4:50789165-50789184 | None:intergenic | 55.0% | |
| GGAAGGAAGGGAGGAGAATG+TGG | + | chr2_4:50789168-50789187 | None:intergenic | 55.0% | |
| ! | TTGAGAGAGCGCGGAAGGAA+GGG | + | chr2_4:50789180-50789199 | None:intergenic | 55.0% |
| ! | ACAAGTTGAGAGAGCGCGGA+AGG | + | chr2_4:50789185-50789204 | None:intergenic | 55.0% |
| TCGTTGAGGGAAGAGGTGGT+AGG | + | chr2_4:50789208-50789227 | None:intergenic | 55.0% | |
| GGTCGAAGGTTAGGCCAGTT+AGG | + | chr2_4:50789238-50789257 | None:intergenic | 55.0% | |
| AGATATGAGATCCGCACCGC+CGG | - | chr2_4:50789590-50789609 | Msa0333140:intron | 55.0% | |
| CGATGTGTTCTACAGGAGCC+AGG | + | chr2_4:50790386-50790405 | None:intergenic | 55.0% | |
| GGAGAGGGAGCGAGAGAAGA+AGG | + | chr2_4:50789065-50789084 | None:intergenic | 60.0% | |
| GGGAGTGGTGGTTGTGGAGA+GGG | + | chr2_4:50789080-50789099 | None:intergenic | 60.0% | |
| AGGGAGTGGTGGTTGTGGAG+AGG | + | chr2_4:50789081-50789100 | None:intergenic | 60.0% | |
| GGAAGAGGGAGTGGTGGTTG+TGG | + | chr2_4:50789086-50789105 | None:intergenic | 60.0% | |
| GGGAATGGAGGAAGAGGGAG+TGG | + | chr2_4:50789095-50789114 | None:intergenic | 60.0% | |
| GCGAAGGAAGGAGGGAATGG+AGG | + | chr2_4:50789107-50789126 | None:intergenic | 60.0% | |
| ACGGCGAAGGAAGGAGGGAA+TGG | + | chr2_4:50789110-50789129 | None:intergenic | 60.0% | |
| GGAAGGGAGGAGAATGTGGC+GGG | + | chr2_4:50789164-50789183 | None:intergenic | 60.0% | |
| ! | GTTGAGAGAGCGCGGAAGGA+AGG | + | chr2_4:50789181-50789200 | None:intergenic | 60.0% |
| TCTACAGGAGCCAGGGCCAA+AGG | + | chr2_4:50790378-50790397 | None:intergenic | 60.0% | |
| !! | ACATCGATTCACAGGGCGGG+CGG | + | chr2_4:50790414-50790433 | None:intergenic | 60.0% |
| GGAGAGGGAGCGAGAGAAGA+AGG | + | chr2_4:50789065-50789084 | None:intergenic | 60.0% | |
| GGGAGTGGTGGTTGTGGAGA+GGG | + | chr2_4:50789080-50789099 | None:intergenic | 60.0% | |
| AGGGAGTGGTGGTTGTGGAG+AGG | + | chr2_4:50789081-50789100 | None:intergenic | 60.0% | |
| GGAAGAGGGAGTGGTGGTTG+TGG | + | chr2_4:50789086-50789105 | None:intergenic | 60.0% | |
| GGGAATGGAGGAAGAGGGAG+TGG | + | chr2_4:50789095-50789114 | None:intergenic | 60.0% | |
| GCGAAGGAAGGAGGGAATGG+AGG | + | chr2_4:50789107-50789126 | None:intergenic | 60.0% | |
| ACGGCGAAGGAAGGAGGGAA+TGG | + | chr2_4:50789110-50789129 | None:intergenic | 60.0% | |
| GGAAGGGAGGAGAATGTGGC+GGG | + | chr2_4:50789164-50789183 | None:intergenic | 60.0% | |
| ! | GTTGAGAGAGCGCGGAAGGA+AGG | + | chr2_4:50789181-50789200 | None:intergenic | 60.0% |
| TCTACAGGAGCCAGGGCCAA+AGG | + | chr2_4:50790378-50790397 | None:intergenic | 60.0% | |
| !! | ACATCGATTCACAGGGCGGG+CGG | + | chr2_4:50790414-50790433 | None:intergenic | 60.0% |
| CGGAGACGGCGAAGGAAGGA+GGG | + | chr2_4:50789115-50789134 | None:intergenic | 65.0% | |
| ACGGAGACGGCGAAGGAAGG+AGG | + | chr2_4:50789116-50789135 | None:intergenic | 65.0% | |
| AGGACGGAGACGGCGAAGGA+AGG | + | chr2_4:50789119-50789138 | None:intergenic | 65.0% | |
| CAAGAGGACGGAGACGGCGA+AGG | + | chr2_4:50789123-50789142 | None:intergenic | 65.0% | |
| CGGTGGCAAGAGGACGGAGA+CGG | + | chr2_4:50789129-50789148 | None:intergenic | 65.0% | |
| GTTACGGCAGCGGTGGCAAG+AGG | + | chr2_4:50789139-50789158 | None:intergenic | 65.0% | |
| ! | AGGGAGGAGAATGTGGCGGG+AGG | + | chr2_4:50789161-50789180 | None:intergenic | 65.0% |
| ! | AGAGAGCGCGGAAGGAAGGG+AGG | + | chr2_4:50789177-50789196 | None:intergenic | 65.0% |
| CGGAGACGGCGAAGGAAGGA+GGG | + | chr2_4:50789115-50789134 | None:intergenic | 65.0% | |
| ACGGAGACGGCGAAGGAAGG+AGG | + | chr2_4:50789116-50789135 | None:intergenic | 65.0% | |
| AGGACGGAGACGGCGAAGGA+AGG | + | chr2_4:50789119-50789138 | None:intergenic | 65.0% | |
| CAAGAGGACGGAGACGGCGA+AGG | + | chr2_4:50789123-50789142 | None:intergenic | 65.0% | |
| CGGTGGCAAGAGGACGGAGA+CGG | + | chr2_4:50789129-50789148 | None:intergenic | 65.0% | |
| GTTACGGCAGCGGTGGCAAG+AGG | + | chr2_4:50789139-50789158 | None:intergenic | 65.0% | |
| ! | AGGGAGGAGAATGTGGCGGG+AGG | + | chr2_4:50789161-50789180 | None:intergenic | 65.0% |
| ! | AGAGAGCGCGGAAGGAAGGG+AGG | + | chr2_4:50789177-50789196 | None:intergenic | 65.0% |
| CGGCAGCGGTGGCAAGAGGA+CGG | + | chr2_4:50789135-50789154 | None:intergenic | 70.0% | |
| ! | GTGGCGGGAGGTTACGGCAG+CGG | + | chr2_4:50789149-50789168 | None:intergenic | 70.0% |
| GCAGTTGGGGCCTTTGGCCC+TGG | - | chr2_4:50790365-50790384 | Msa0333140:intron | 70.0% | |
| CGATTCACAGGGCGGGCGGA+TGG | + | chr2_4:50790410-50790429 | None:intergenic | 70.0% | |
| CGGCAGCGGTGGCAAGAGGA+CGG | + | chr2_4:50789135-50789154 | None:intergenic | 70.0% | |
| ! | GTGGCGGGAGGTTACGGCAG+CGG | + | chr2_4:50789149-50789168 | None:intergenic | 70.0% |
| GCAGTTGGGGCCTTTGGCCC+TGG | - | chr2_4:50790365-50790384 | Msa0333140:intron | 70.0% | |
| CGATTCACAGGGCGGGCGGA+TGG | + | chr2_4:50790410-50790429 | None:intergenic | 70.0% | |
| GCGGGAGGTTACGGCAGCGG+TGG | + | chr2_4:50789146-50789165 | None:intergenic | 75.0% | |
| GCGGGAGGTTACGGCAGCGG+TGG | + | chr2_4:50789146-50789165 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 50789016 | 50790939 | 50789016 | ID=Msa0333140;Name=Msa0333140 |
| chr2_4 | mRNA | 50789016 | 50790939 | 50789016 | ID=Msa0333140-mRNA-1;Parent=Msa0333140;Name=Msa0333140-mRNA-1;_AED=0.04;_eAED=0.14;_QI=0|0.66|0.25|1|1|1|4|0|253 |
| chr2_4 | exon | 50790578 | 50790939 | 50790578 | ID=Msa0333140-mRNA-1:exon:15170;Parent=Msa0333140-mRNA-1 |
| chr2_4 | exon | 50790104 | 50790201 | 50790104 | ID=Msa0333140-mRNA-1:exon:15169;Parent=Msa0333140-mRNA-1 |
| chr2_4 | exon | 50789941 | 50790006 | 50789941 | ID=Msa0333140-mRNA-1:exon:15168;Parent=Msa0333140-mRNA-1 |
| chr2_4 | exon | 50789016 | 50789251 | 50789016 | ID=Msa0333140-mRNA-1:exon:15167;Parent=Msa0333140-mRNA-1 |
| chr2_4 | CDS | 50790578 | 50790939 | 50790578 | ID=Msa0333140-mRNA-1:cds;Parent=Msa0333140-mRNA-1 |
| chr2_4 | CDS | 50790104 | 50790201 | 50790104 | ID=Msa0333140-mRNA-1:cds;Parent=Msa0333140-mRNA-1 |
| chr2_4 | CDS | 50789941 | 50790006 | 50789941 | ID=Msa0333140-mRNA-1:cds;Parent=Msa0333140-mRNA-1 |
| chr2_4 | CDS | 50789016 | 50789251 | 50789016 | ID=Msa0333140-mRNA-1:cds;Parent=Msa0333140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
