Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336100 | XP_003596864.1 | 94.211 | 380 | 22 | 0 | 13 | 392 | 89 | 468 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336100 | sp|Q3T0W4|PP1R7_BOVIN | 31.844 | 179 | 113 | 4 | 9 | 184 | 186 | 358 | 2.95e-14 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336100 | G7IHH7 | 94.211 | 380 | 22 | 0 | 13 | 392 | 89 | 468 | 0.0 | 644 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0219260 | Msa0336100 | 0.805910 | 1.062488e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336100 | MtrunA17_Chr2g0321711 | 94.211 | 380 | 22 | 0 | 13 | 392 | 89 | 468 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336100 | AT5G22320.1 | 42.377 | 387 | 190 | 11 | 13 | 390 | 89 | 451 | 1.21e-70 | 229 |
| Msa0336100 | AT5G22320.2 | 40.052 | 387 | 183 | 12 | 13 | 390 | 89 | 435 | 6.02e-60 | 201 |
Find 101 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTTCGGAATTTAGATTT+AGG | 0.140201 | 2_4:+55373464 | Msa0336100:CDS |
| AGAAATTCATTTGAAGTAAT+TGG | 0.187992 | 2_4:-55374785 | None:intergenic |
| CCCATTCCAATTTCTGTTAC+TGG | 0.188491 | 2_4:-55374404 | None:intergenic |
| CATTGCATTTCTCCTTGTTC+AGG | 0.189521 | 2_4:+55374525 | Msa0336100:three_prime_UTR |
| GAATTGTGCATTAGTTCTTC+TGG | 0.203595 | 2_4:-55373440 | None:intergenic |
| AGACTCCACTTTATGCATTT+TGG | 0.207816 | 2_4:-55374372 | None:intergenic |
| TGCAAAATGGTCAGATATAA+AGG | 0.253542 | 2_4:+55373499 | Msa0336100:CDS |
| TTCTTGGTATCTTTATCTAT+TGG | 0.257179 | 2_4:-55373819 | None:intergenic |
| TCATCTCCAGTAACAGAAAT+TGG | 0.264149 | 2_4:+55374398 | Msa0336100:CDS |
| TCTTGCTCACAATGATATTA+AGG | 0.282764 | 2_4:+55373270 | Msa0336100:CDS |
| AGCTTCGGAATTTAGATTTA+GGG | 0.295145 | 2_4:+55373465 | Msa0336100:CDS |
| CAAGTGACCTTTCTCATTCT+TGG | 0.296468 | 2_4:-55373835 | None:intergenic |
| AAGAAAATTTAAACTCCCTT+TGG | 0.331012 | 2_4:-55374893 | None:intergenic |
| ACAAAATACTCAATAAATAA+TGG | 0.340042 | 2_4:-55374760 | None:intergenic |
| CAGATGTATACCATTACATT+TGG | 0.349903 | 2_4:-55374940 | None:intergenic |
| ACAGGTCATAACAAGGATAA+TGG | 0.368572 | 2_4:+55374008 | Msa0336100:CDS |
| GTGAATTGCACATCAGATTC+TGG | 0.371790 | 2_4:+55374683 | Msa0336100:three_prime_UTR |
| ACTTTCTCATTTGTAGCAAC+AGG | 0.381222 | 2_4:-55373655 | None:intergenic |
| GGTATCTTTATCTATTGGTT+TGG | 0.382169 | 2_4:-55373814 | None:intergenic |
| TAAATTGAGATTTCTCAGTT+TGG | 0.382838 | 2_4:-55373623 | None:intergenic |
| ATAGACCCCACCTTCCTTCT+CGG | 0.391386 | 2_4:-55373973 | None:intergenic |
| ATTGCATTTCTCCTTGTTCA+GGG | 0.397484 | 2_4:+55374526 | Msa0336100:three_prime_UTR |
| GTTGATTTATTCTTCGTGTC+AGG | 0.403540 | 2_4:-55374068 | None:intergenic |
| CATCTGATCAAGTTTGCAAA+TGG | 0.405995 | 2_4:-55372469 | None:intergenic |
| CCTTTCACATTGTCAGATTG+AGG | 0.407813 | 2_4:+55373201 | Msa0336100:CDS |
| AATTGTGCATTAGTTCTTCT+GGG | 0.410918 | 2_4:-55373439 | None:intergenic |
| CCACCTGGGTTTAGCACAAA+TGG | 0.413148 | 2_4:-55374650 | None:intergenic |
| GCGTTGAATACTTGTAGCTT+TGG | 0.437925 | 2_4:-55373792 | None:intergenic |
| ATCTTGAAGCTGCTGACAAA+AGG | 0.439283 | 2_4:+55373913 | Msa0336100:CDS |
| GGAATAATGTGATTGCAAAA+TGG | 0.446348 | 2_4:+55373486 | Msa0336100:CDS |
| CTCTCGAGGAGAATGTTAAT+AGG | 0.448873 | 2_4:+55374141 | Msa0336100:CDS |
| CTTTCACATTGTCAGATTGA+GGG | 0.449337 | 2_4:+55373202 | Msa0336100:CDS |
| TTGGCACTCTTATGCTTGAC+AGG | 0.455417 | 2_4:-55374353 | None:intergenic |
| TACTCAATAAATAATGGAAA+AGG | 0.460616 | 2_4:-55374754 | None:intergenic |
| TGAATCGAACTCGGTACTCT+AGG | 0.462484 | 2_4:+55374596 | Msa0336100:three_prime_UTR |
| ATTTCAAATCCTTAGGCGCT+TGG | 0.462547 | 2_4:-55374307 | None:intergenic |
| TAATCTTCATCCAAATGTAA+TGG | 0.462717 | 2_4:+55374930 | Msa0336100:three_prime_UTR |
| TTTCATAGTAGTCATGCAAA+AGG | 0.463184 | 2_4:-55374845 | None:intergenic |
| GGAAGGTGGGGTCTATGATA+AGG | 0.467284 | 2_4:+55373980 | Msa0336100:CDS |
| AATAATGGAAAAGGCAAGAA+AGG | 0.468786 | 2_4:-55374745 | None:intergenic |
| TAATGCACAATTCAAAGCTT+CGG | 0.479074 | 2_4:+55373450 | Msa0336100:CDS |
| TGGCAAATGCAACAATATCT+TGG | 0.480404 | 2_4:+55374969 | Msa0336100:three_prime_UTR |
| TTCACATATTAGCCTCCACC+TGG | 0.481607 | 2_4:-55374665 | None:intergenic |
| CTCAATCTGACAATGTGAAA+GGG | 0.482918 | 2_4:-55373200 | None:intergenic |
| CTCACTAATTTCAAATCCTT+AGG | 0.490267 | 2_4:-55374314 | None:intergenic |
| CATGCAAAAGGGGAGGGGAG+AGG | 0.494113 | 2_4:-55374833 | None:intergenic |
| TTCATAGTAGTCATGCAAAA+GGG | 0.494527 | 2_4:-55374844 | None:intergenic |
| AATGTCAGCAAATGAAGCTT+CGG | 0.495172 | 2_4:-55374228 | None:intergenic |
| AATTGTTGTTACTTTCCAAA+GGG | 0.502368 | 2_4:+55374878 | Msa0336100:three_prime_UTR |
| GAGTGCCAAAATGCATAAAG+TGG | 0.507006 | 2_4:+55374367 | Msa0336100:CDS |
| GTCTATGATAAGGAAAATAC+AGG | 0.507147 | 2_4:+55373990 | Msa0336100:CDS |
| AAAGGACGACGGCAAGCCCT+CGG | 0.507847 | 2_4:+55374106 | Msa0336100:CDS |
| GGCAAACATTACCTTTGTGA+TGG | 0.510475 | 2_4:-55373090 | None:intergenic |
| AAAGATACCAAGAATGAGAA+AGG | 0.511481 | 2_4:+55373828 | Msa0336100:CDS |
| CCAGTAACAGAAATTGGAAT+GGG | 0.514929 | 2_4:+55374404 | Msa0336100:CDS |
| GCTACAGAACCAAGCGCCTA+AGG | 0.515364 | 2_4:+55374298 | Msa0336100:CDS |
| GATCAGGAAAATCTGAATCA+TGG | 0.515970 | 2_4:+55374263 | Msa0336100:CDS |
| ATGGTATACATCTGAACCAC+TGG | 0.522003 | 2_4:+55374949 | Msa0336100:three_prime_UTR |
| CAGTTCAACACAAAACTTGA+GGG | 0.525455 | 2_4:-55373236 | None:intergenic |
| CTGAGAAATCTCAATTTACA+AGG | 0.527846 | 2_4:+55373628 | Msa0336100:CDS |
| CCTCAATCTGACAATGTGAA+AGG | 0.540601 | 2_4:-55373201 | None:intergenic |
| ATGAAAGAATTGAATACTCT+CGG | 0.542671 | 2_4:+55372489 | Msa0336100:CDS |
| AAGAGACAAACATCACAAGT+AGG | 0.545697 | 2_4:-55374707 | None:intergenic |
| GTGAACCAGGTACTAAATGC+AGG | 0.545787 | 2_4:+55372209 | Msa0336100:CDS |
| TCCAGTAACAGAAATTGGAA+TGG | 0.551066 | 2_4:+55374403 | Msa0336100:CDS |
| AAATGAGAAAGTTACAAGAA+AGG | 0.556080 | 2_4:+55373666 | Msa0336100:CDS |
| GAATCGAACTCGGTACTCTA+GGG | 0.559753 | 2_4:+55374597 | Msa0336100:three_prime_UTR |
| GTAGTCATGCAAAAGGGGAG+GGG | 0.566771 | 2_4:-55374838 | None:intergenic |
| TGAGTCAGTAAGAAAACAGT+AGG | 0.568093 | 2_4:-55374488 | None:intergenic |
| AGTAGTCATGCAAAAGGGGA+GGG | 0.568334 | 2_4:-55374839 | None:intergenic |
| AATTGGCGAGGCTCTGAAGA+AGG | 0.568851 | 2_4:+55373061 | Msa0336100:CDS |
| AAATTGTTGTTACTTTCCAA+AGG | 0.579314 | 2_4:+55374877 | Msa0336100:three_prime_UTR |
| AACTGTTGATGTATCCGAGA+AGG | 0.580615 | 2_4:+55373959 | Msa0336100:CDS |
| GATGTATCCGAGAAGGAAGG+TGG | 0.583676 | 2_4:+55373966 | Msa0336100:CDS |
| AGAGACAAACATCACAAGTA+GGG | 0.589548 | 2_4:-55374706 | None:intergenic |
| AACTGTGCTCACCCTGAACA+AGG | 0.591893 | 2_4:-55374537 | None:intergenic |
| AGAGGAGACATAAAACTTAG+TGG | 0.592192 | 2_4:-55374815 | None:intergenic |
| GATATTGTTGCATTTGCCAG+TGG | 0.603591 | 2_4:-55374965 | None:intergenic |
| AGATCATGTCGATCAAAATG+AGG | 0.604619 | 2_4:+55373884 | Msa0336100:CDS |
| CACCATTCAAAATCAGTGCA+CGG | 0.606464 | 2_4:-55372280 | None:intergenic |
| TTTGTGCTAAACCCAGGTGG+AGG | 0.613343 | 2_4:+55374653 | Msa0336100:three_prime_UTR |
| TCATAGTAGTCATGCAAAAG+GGG | 0.614238 | 2_4:-55374843 | None:intergenic |
| GAATGGGAGGTTCATCAACA+TGG | 0.618002 | 2_4:+55374420 | Msa0336100:CDS |
| AAAGAAGAATCGAAAGAACA+AGG | 0.618334 | 2_4:+55374175 | Msa0336100:CDS |
| ATGTATCCGAGAAGGAAGGT+GGG | 0.618544 | 2_4:+55373967 | Msa0336100:CDS |
| TAGTAGTCATGCAAAAGGGG+AGG | 0.622420 | 2_4:-55374840 | None:intergenic |
| TCCTATCCGTAAAATTGGCG+AGG | 0.623359 | 2_4:+55373049 | Msa0336100:CDS |
| TTTATACGATCATGTGAACC+AGG | 0.623831 | 2_4:+55372196 | Msa0336100:CDS |
| TGATCAGTATGAATCGAACT+CGG | 0.625560 | 2_4:+55374587 | Msa0336100:three_prime_UTR |
| GGAAAATACAGGTCATAACA+AGG | 0.632189 | 2_4:+55374001 | Msa0336100:CDS |
| TCAGTTCAACACAAAACTTG+AGG | 0.639929 | 2_4:-55373237 | None:intergenic |
| GTTGATGTATCCGAGAAGGA+AGG | 0.641292 | 2_4:+55373963 | Msa0336100:CDS |
| GTAACAGAAATTGGAATGGG+AGG | 0.647412 | 2_4:+55374407 | Msa0336100:CDS |
| TCACATATTAGCCTCCACCT+GGG | 0.660002 | 2_4:-55374664 | None:intergenic |
| TGTATCCGAGAAGGAAGGTG+GGG | 0.665884 | 2_4:+55373968 | Msa0336100:CDS |
| ATTCAAAATCAGTGCACGGA+GGG | 0.667546 | 2_4:-55372276 | None:intergenic |
| AAACCATTTGTGCTAAACCC+AGG | 0.672861 | 2_4:+55374647 | Msa0336100:three_prime_UTR |
| GAAGGTGAAATCCATCACAA+AGG | 0.679265 | 2_4:+55373079 | Msa0336100:CDS |
| CCATTTGTGCTAAACCCAGG+TGG | 0.709050 | 2_4:+55374650 | Msa0336100:three_prime_UTR |
| CAGGAAAATCTGAATCATGG+TGG | 0.716042 | 2_4:+55374266 | Msa0336100:CDS |
| CATTCAAAATCAGTGCACGG+AGG | 0.728165 | 2_4:-55372277 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAACTTAAATCTA+TGG | + | chr2_4:55372232-55372251 | Msa0336100:CDS | 10.0% |
| !! | ACAAAATACTCAATAAATAA+TGG | - | chr2_4:55374763-55374782 | None:intergenic | 15.0% |
| !!! | AAATATCTTTTGATTATACA+TGG | - | chr2_4:55374998-55375017 | None:intergenic | 15.0% |
| !! | TATTCAAAAATTATTTGAGC+TGG | - | chr2_4:55373000-55373019 | None:intergenic | 20.0% |
| !!! | TACTCAATAAATAATGGAAA+AGG | - | chr2_4:55374757-55374776 | None:intergenic | 20.0% |
| !!! | AGAAATTCATTTGAAGTAAT+TGG | - | chr2_4:55374788-55374807 | None:intergenic | 20.0% |
| ! | TTCAACTTTCAAAATAGATG+AGG | - | chr2_4:55372332-55372351 | None:intergenic | 25.0% |
| ! | ATGAAAGAATTGAATACTCT+CGG | + | chr2_4:55372489-55372508 | Msa0336100:CDS | 25.0% |
| ! | ATTCAAACTGTCTTGATATA+AGG | + | chr2_4:55372817-55372836 | Msa0336100:intron | 25.0% |
| !! | TTTGAAATGCAAACTATTGT+TGG | + | chr2_4:55372950-55372969 | Msa0336100:intron | 25.0% |
| ! | AAAAATCCTATCCGTAAAAT+TGG | + | chr2_4:55373044-55373063 | Msa0336100:CDS | 25.0% |
| ! | AAATAACTAATGAGCACTAA+AGG | - | chr2_4:55373132-55373151 | None:intergenic | 25.0% |
| !!! | TTTTTGATTCTACATGCTTT+TGG | + | chr2_4:55373317-55373336 | Msa0336100:intron | 25.0% |
| !! | CTTTATATTGTGCTAACTTT+TGG | + | chr2_4:55373404-55373423 | Msa0336100:intron | 25.0% |
| ! | TAAATTGAGATTTCTCAGTT+TGG | - | chr2_4:55373626-55373645 | None:intergenic | 25.0% |
| ! | AAATGAGAAAGTTACAAGAA+AGG | + | chr2_4:55373666-55373685 | Msa0336100:CDS | 25.0% |
| !! | TTTTGAACCAAAAAAAGCAA+GGG | - | chr2_4:55373696-55373715 | None:intergenic | 25.0% |
| !! | ATTTTGAACCAAAAAAAGCA+AGG | - | chr2_4:55373697-55373716 | None:intergenic | 25.0% |
| ! | TTCTTGGTATCTTTATCTAT+TGG | - | chr2_4:55373822-55373841 | None:intergenic | 25.0% |
| !!! | AGTTTCCTTTCTTTTTTTAC+TGG | - | chr2_4:55373943-55373962 | None:intergenic | 25.0% |
| ! | AACGAAGAAAAAGCTAAAAA+AGG | + | chr2_4:55374088-55374107 | Msa0336100:CDS | 25.0% |
| !!! | AAATTGTTGTTACTTTCCAA+AGG | + | chr2_4:55374877-55374896 | Msa0336100:three_prime_UTR | 25.0% |
| !!! | AATTGTTGTTACTTTCCAAA+GGG | + | chr2_4:55374878-55374897 | Msa0336100:three_prime_UTR | 25.0% |
| ! | AAGAAAATTTAAACTCCCTT+TGG | - | chr2_4:55374896-55374915 | None:intergenic | 25.0% |
| ! | TAATCTTCATCCAAATGTAA+TGG | + | chr2_4:55374930-55374949 | Msa0336100:three_prime_UTR | 25.0% |
| ! | AAACAAGAGATTTTGTAAGC+TGG | + | chr2_4:55372728-55372747 | Msa0336100:intron | 30.0% |
| TTGCATTTCAAACATACAAC+AGG | - | chr2_4:55372942-55372961 | None:intergenic | 30.0% | |
| ACCATCAGCAAGATATTATT+TGG | - | chr2_4:55372976-55372995 | None:intergenic | 30.0% | |
| ATTACTCATAATTCCTCTTC+TGG | + | chr2_4:55373167-55373186 | Msa0336100:intron | 30.0% | |
| TCTTGCTCACAATGATATTA+AGG | + | chr2_4:55373270-55373289 | Msa0336100:CDS | 30.0% | |
| AAAGCAAAGTCACGAATTTA+AGG | - | chr2_4:55373300-55373319 | None:intergenic | 30.0% | |
| !!! | TGCTTTTGGAATGTTTAATG+TGG | + | chr2_4:55373331-55373350 | Msa0336100:intron | 30.0% |
| ! | AATTGTGCATTAGTTCTTCT+GGG | - | chr2_4:55373442-55373461 | None:intergenic | 30.0% |
| TAATGCACAATTCAAAGCTT+CGG | + | chr2_4:55373450-55373469 | Msa0336100:CDS | 30.0% | |
| AAGCTTCGGAATTTAGATTT+AGG | + | chr2_4:55373464-55373483 | Msa0336100:CDS | 30.0% | |
| AGCTTCGGAATTTAGATTTA+GGG | + | chr2_4:55373465-55373484 | Msa0336100:CDS | 30.0% | |
| GGAATAATGTGATTGCAAAA+TGG | + | chr2_4:55373486-55373505 | Msa0336100:CDS | 30.0% | |
| TGCAAAATGGTCAGATATAA+AGG | + | chr2_4:55373499-55373518 | Msa0336100:CDS | 30.0% | |
| AGATATAAAGGTTTGTCATC+TGG | + | chr2_4:55373511-55373530 | Msa0336100:intron | 30.0% | |
| CTGAGAAATCTCAATTTACA+AGG | + | chr2_4:55373628-55373647 | Msa0336100:CDS | 30.0% | |
| ATCATACACATGGTAGTTTA+AGG | - | chr2_4:55373750-55373769 | None:intergenic | 30.0% | |
| AATCTGTAACATCATACACA+TGG | - | chr2_4:55373760-55373779 | None:intergenic | 30.0% | |
| ! | GGTATCTTTATCTATTGGTT+TGG | - | chr2_4:55373817-55373836 | None:intergenic | 30.0% |
| AAAGATACCAAGAATGAGAA+AGG | + | chr2_4:55373828-55373847 | Msa0336100:CDS | 30.0% | |
| TGAAAAATCATGAGCATCAT+CGG | - | chr2_4:55373862-55373881 | None:intergenic | 30.0% | |
| GAAGTCCAGTAAAAAAAGAA+AGG | + | chr2_4:55373935-55373954 | Msa0336100:CDS | 30.0% | |
| GTCTATGATAAGGAAAATAC+AGG | + | chr2_4:55373990-55374009 | Msa0336100:CDS | 30.0% | |
| AAAAAGAAAGACAAACTCAC+AGG | + | chr2_4:55374035-55374054 | Msa0336100:CDS | 30.0% | |
| AAAAAGCTAAAAAAGGACGA+CGG | + | chr2_4:55374095-55374114 | Msa0336100:CDS | 30.0% | |
| AAAGAAGAATCGAAAGAACA+AGG | + | chr2_4:55374175-55374194 | Msa0336100:CDS | 30.0% | |
| ! | TGCTGACATTTTTAACATCA+AGG | + | chr2_4:55374241-55374260 | Msa0336100:CDS | 30.0% |
| ! | CATTTTTAACATCAAGGATC+AGG | + | chr2_4:55374247-55374266 | Msa0336100:CDS | 30.0% |
| CTCACTAATTTCAAATCCTT+AGG | - | chr2_4:55374317-55374336 | None:intergenic | 30.0% | |
| ! | AATAATGGAAAAGGCAAGAA+AGG | - | chr2_4:55374748-55374767 | None:intergenic | 30.0% |
| TTCATAGTAGTCATGCAAAA+GGG | - | chr2_4:55374847-55374866 | None:intergenic | 30.0% | |
| TTTCATAGTAGTCATGCAAA+AGG | - | chr2_4:55374848-55374867 | None:intergenic | 30.0% | |
| CAGATGTATACCATTACATT+TGG | - | chr2_4:55374943-55374962 | None:intergenic | 30.0% | |
| TTTATACGATCATGTGAACC+AGG | + | chr2_4:55372196-55372215 | Msa0336100:CDS | 35.0% | |
| ! | TTTTTCCTGCATTTAGTACC+TGG | - | chr2_4:55372217-55372236 | None:intergenic | 35.0% |
| ACTTTCAAAATAGATGAGGC+TGG | - | chr2_4:55372328-55372347 | None:intergenic | 35.0% | |
| CATCTGATCAAGTTTGCAAA+TGG | - | chr2_4:55372472-55372491 | None:intergenic | 35.0% | |
| !! | AGTCTGAAAAAGATGGACTA+TGG | - | chr2_4:55372585-55372604 | None:intergenic | 35.0% |
| TCGCTAAAGTCTGAAAAAGA+TGG | - | chr2_4:55372592-55372611 | None:intergenic | 35.0% | |
| CTCTTCTTATAAAACCCCTT+GGG | - | chr2_4:55372856-55372875 | None:intergenic | 35.0% | |
| GCCAAATAATATCTTGCTGA+TGG | + | chr2_4:55372972-55372991 | Msa0336100:intron | 35.0% | |
| CTCAATCTGACAATGTGAAA+GGG | - | chr2_4:55373203-55373222 | None:intergenic | 35.0% | |
| CTTTCACATTGTCAGATTGA+GGG | + | chr2_4:55373202-55373221 | Msa0336100:CDS | 35.0% | |
| CAGTTCAACACAAAACTTGA+GGG | - | chr2_4:55373239-55373258 | None:intergenic | 35.0% | |
| TCAGTTCAACACAAAACTTG+AGG | - | chr2_4:55373240-55373259 | None:intergenic | 35.0% | |
| ! | GAATTGTGCATTAGTTCTTC+TGG | - | chr2_4:55373443-55373462 | None:intergenic | 35.0% |
| AGACAACGATAAAACGTTGT+TGG | - | chr2_4:55373544-55373563 | None:intergenic | 35.0% | |
| ! | CAATACAAGATGAAGGTACA+TGG | - | chr2_4:55373578-55373597 | None:intergenic | 35.0% |
| ACAGTTGCAATACAAGATGA+AGG | - | chr2_4:55373585-55373604 | None:intergenic | 35.0% | |
| TCATCTTGTATTGCAACTGT+AGG | + | chr2_4:55373585-55373604 | Msa0336100:intron | 35.0% | |
| ACTTTCTCATTTGTAGCAAC+AGG | - | chr2_4:55373658-55373677 | None:intergenic | 35.0% | |
| AGATCATGTCGATCAAAATG+AGG | + | chr2_4:55373884-55373903 | Msa0336100:CDS | 35.0% | |
| GGAAAATACAGGTCATAACA+AGG | + | chr2_4:55374001-55374020 | Msa0336100:CDS | 35.0% | |
| ACAGGTCATAACAAGGATAA+TGG | + | chr2_4:55374008-55374027 | Msa0336100:CDS | 35.0% | |
| ! | GTTGATTTATTCTTCGTGTC+AGG | - | chr2_4:55374071-55374090 | None:intergenic | 35.0% |
| AATGTCAGCAAATGAAGCTT+CGG | - | chr2_4:55374231-55374250 | None:intergenic | 35.0% | |
| GATCAGGAAAATCTGAATCA+TGG | + | chr2_4:55374263-55374282 | Msa0336100:CDS | 35.0% | |
| ! | AGACTCCACTTTATGCATTT+TGG | - | chr2_4:55374375-55374394 | None:intergenic | 35.0% |
| TCATCTCCAGTAACAGAAAT+TGG | + | chr2_4:55374398-55374417 | Msa0336100:CDS | 35.0% | |
| TCCAGTAACAGAAATTGGAA+TGG | + | chr2_4:55374403-55374422 | Msa0336100:CDS | 35.0% | |
| CCAGTAACAGAAATTGGAAT+GGG | + | chr2_4:55374404-55374423 | Msa0336100:CDS | 35.0% | |
| !! | CAGTAGGTTTTTAAGCATAG+CGG | - | chr2_4:55374475-55374494 | None:intergenic | 35.0% |
| TGAGTCAGTAAGAAAACAGT+AGG | - | chr2_4:55374491-55374510 | None:intergenic | 35.0% | |
| ATTGCATTTCTCCTTGTTCA+GGG | + | chr2_4:55374526-55374545 | Msa0336100:three_prime_UTR | 35.0% | |
| TGATCAGTATGAATCGAACT+CGG | + | chr2_4:55374587-55374606 | Msa0336100:three_prime_UTR | 35.0% | |
| AGAGACAAACATCACAAGTA+GGG | - | chr2_4:55374709-55374728 | None:intergenic | 35.0% | |
| AAGAGACAAACATCACAAGT+AGG | - | chr2_4:55374710-55374729 | None:intergenic | 35.0% | |
| AGAGGAGACATAAAACTTAG+TGG | - | chr2_4:55374818-55374837 | None:intergenic | 35.0% | |
| TCATAGTAGTCATGCAAAAG+GGG | - | chr2_4:55374846-55374865 | None:intergenic | 35.0% | |
| TGGCAAATGCAACAATATCT+TGG | + | chr2_4:55374969-55374988 | Msa0336100:three_prime_UTR | 35.0% | |
| ATTCAAAATCAGTGCACGGA+GGG | - | chr2_4:55372279-55372298 | None:intergenic | 40.0% | |
| CACCATTCAAAATCAGTGCA+CGG | - | chr2_4:55372283-55372302 | None:intergenic | 40.0% | |
| TGCTGTGCTTTCATCACAAT+AGG | + | chr2_4:55372627-55372646 | Msa0336100:intron | 40.0% | |
| AGGATCAACAGTATTTCCCA+AGG | + | chr2_4:55372837-55372856 | Msa0336100:intron | 40.0% | |
| GGATCAACAGTATTTCCCAA+GGG | + | chr2_4:55372838-55372857 | Msa0336100:intron | 40.0% | |
| GATCAACAGTATTTCCCAAG+GGG | + | chr2_4:55372839-55372858 | Msa0336100:intron | 40.0% | |
| CCTCTTCTTATAAAACCCCT+TGG | - | chr2_4:55372857-55372876 | None:intergenic | 40.0% | |
| !! | CCAAGGGGTTTTATAAGAAG+AGG | + | chr2_4:55372854-55372873 | Msa0336100:intron | 40.0% |
| !! | AGGGGTTTTATAAGAAGAGG+AGG | + | chr2_4:55372857-55372876 | Msa0336100:intron | 40.0% |
| GAAGGTGAAATCCATCACAA+AGG | + | chr2_4:55373079-55373098 | Msa0336100:CDS | 40.0% | |
| GGCAAACATTACCTTTGTGA+TGG | - | chr2_4:55373093-55373112 | None:intergenic | 40.0% | |
| TAAAGGAGCTCAACAGCTTA+GGG | - | chr2_4:55373115-55373134 | None:intergenic | 40.0% | |
| CCTCAATCTGACAATGTGAA+AGG | - | chr2_4:55373204-55373223 | None:intergenic | 40.0% | |
| CCTTTCACATTGTCAGATTG+AGG | + | chr2_4:55373201-55373220 | Msa0336100:CDS | 40.0% | |
| !!! | AGGTGATCCCTTGCTTTTTT+TGG | + | chr2_4:55373686-55373705 | Msa0336100:intron | 40.0% |
| GCGTTGAATACTTGTAGCTT+TGG | - | chr2_4:55373795-55373814 | None:intergenic | 40.0% | |
| CAAGTGACCTTTCTCATTCT+TGG | - | chr2_4:55373838-55373857 | None:intergenic | 40.0% | |
| ATCTTGAAGCTGCTGACAAA+AGG | + | chr2_4:55373913-55373932 | Msa0336100:CDS | 40.0% | |
| AACTGTTGATGTATCCGAGA+AGG | + | chr2_4:55373959-55373978 | Msa0336100:CDS | 40.0% | |
| CTCTCGAGGAGAATGTTAAT+AGG | + | chr2_4:55374141-55374160 | Msa0336100:CDS | 40.0% | |
| CAGGAAAATCTGAATCATGG+TGG | + | chr2_4:55374266-55374285 | Msa0336100:CDS | 40.0% | |
| ATTTCAAATCCTTAGGCGCT+TGG | - | chr2_4:55374310-55374329 | None:intergenic | 40.0% | |
| GAGTGCCAAAATGCATAAAG+TGG | + | chr2_4:55374367-55374386 | Msa0336100:CDS | 40.0% | |
| CCCATTCCAATTTCTGTTAC+TGG | - | chr2_4:55374407-55374426 | None:intergenic | 40.0% | |
| GTAACAGAAATTGGAATGGG+AGG | + | chr2_4:55374407-55374426 | Msa0336100:CDS | 40.0% | |
| CATTGCATTTCTCCTTGTTC+AGG | + | chr2_4:55374525-55374544 | Msa0336100:three_prime_UTR | 40.0% | |
| AAACCATTTGTGCTAAACCC+AGG | + | chr2_4:55374647-55374666 | Msa0336100:three_prime_UTR | 40.0% | |
| GTGAATTGCACATCAGATTC+TGG | + | chr2_4:55374683-55374702 | Msa0336100:three_prime_UTR | 40.0% | |
| ATGGTATACATCTGAACCAC+TGG | + | chr2_4:55374949-55374968 | Msa0336100:three_prime_UTR | 40.0% | |
| GATATTGTTGCATTTGCCAG+TGG | - | chr2_4:55374968-55374987 | None:intergenic | 40.0% | |
| GTGAACCAGGTACTAAATGC+AGG | + | chr2_4:55372209-55372228 | Msa0336100:CDS | 45.0% | |
| CATTCAAAATCAGTGCACGG+AGG | - | chr2_4:55372280-55372299 | None:intergenic | 45.0% | |
| !!! | CTCCGTGCACTGATTTTGAA+TGG | + | chr2_4:55372278-55372297 | Msa0336100:CDS | 45.0% |
| CTGCTAGCGCAGAAAATCTT+AGG | - | chr2_4:55372550-55372569 | None:intergenic | 45.0% | |
| ! | CTAAGATTTTCTGCGCTAGC+AGG | + | chr2_4:55372548-55372567 | Msa0336100:intron | 45.0% |
| TCCTATCCGTAAAATTGGCG+AGG | + | chr2_4:55373049-55373068 | Msa0336100:CDS | 45.0% | |
| ! | TCAGAGCCTCGCCAATTTTA+CGG | - | chr2_4:55373058-55373077 | None:intergenic | 45.0% |
| AAAGGAGCTCAACAGCTTAG+GGG | - | chr2_4:55373114-55373133 | None:intergenic | 45.0% | |
| CTAAAGGAGCTCAACAGCTT+AGG | - | chr2_4:55373116-55373135 | None:intergenic | 45.0% | |
| GACAATGTGAAAGGGAAAGC+TGG | - | chr2_4:55373195-55373214 | None:intergenic | 45.0% | |
| GTTGATGTATCCGAGAAGGA+AGG | + | chr2_4:55373963-55373982 | Msa0336100:CDS | 45.0% | |
| ATGTATCCGAGAAGGAAGGT+GGG | + | chr2_4:55373967-55373986 | Msa0336100:CDS | 45.0% | |
| !! | AGAGCCAAAGCTTTTTCCGA+GGG | - | chr2_4:55374125-55374144 | None:intergenic | 45.0% |
| TTGGCACTCTTATGCTTGAC+AGG | - | chr2_4:55374356-55374375 | None:intergenic | 45.0% | |
| GAATGGGAGGTTCATCAACA+TGG | + | chr2_4:55374420-55374439 | Msa0336100:CDS | 45.0% | |
| TGAATCGAACTCGGTACTCT+AGG | + | chr2_4:55374596-55374615 | Msa0336100:three_prime_UTR | 45.0% | |
| GAATCGAACTCGGTACTCTA+GGG | + | chr2_4:55374597-55374616 | Msa0336100:three_prime_UTR | 45.0% | |
| ! | TCACATATTAGCCTCCACCT+GGG | - | chr2_4:55374667-55374686 | None:intergenic | 45.0% |
| ! | TTCACATATTAGCCTCCACC+TGG | - | chr2_4:55374668-55374687 | None:intergenic | 45.0% |
| AGTAGTCATGCAAAAGGGGA+GGG | - | chr2_4:55374842-55374861 | None:intergenic | 45.0% | |
| TAGTAGTCATGCAAAAGGGG+AGG | - | chr2_4:55374843-55374862 | None:intergenic | 45.0% | |
| ! | GCCTCGCCAATTTTACGGAT+AGG | - | chr2_4:55373053-55373072 | None:intergenic | 50.0% |
| !! | AATTGGCGAGGCTCTGAAGA+AGG | + | chr2_4:55373061-55373080 | Msa0336100:CDS | 50.0% |
| GATGTATCCGAGAAGGAAGG+TGG | + | chr2_4:55373966-55373985 | Msa0336100:CDS | 50.0% | |
| TGTATCCGAGAAGGAAGGTG+GGG | + | chr2_4:55373968-55373987 | Msa0336100:CDS | 50.0% | |
| ATAGACCCCACCTTCCTTCT+CGG | - | chr2_4:55373976-55373995 | None:intergenic | 50.0% | |
| GGAAGGTGGGGTCTATGATA+AGG | + | chr2_4:55373980-55373999 | Msa0336100:CDS | 50.0% | |
| CAAGCCCTCGGAAAAAGCTT+TGG | + | chr2_4:55374118-55374137 | Msa0336100:CDS | 50.0% | |
| !! | GAGAGCCAAAGCTTTTTCCG+AGG | - | chr2_4:55374126-55374145 | None:intergenic | 50.0% |
| !! | GGAAAAAGCTTTGGCTCTCG+AGG | + | chr2_4:55374127-55374146 | Msa0336100:CDS | 50.0% |
| AACTGTGCTCACCCTGAACA+AGG | - | chr2_4:55374540-55374559 | None:intergenic | 50.0% | |
| CCACCTGGGTTTAGCACAAA+TGG | - | chr2_4:55374653-55374672 | None:intergenic | 50.0% | |
| CCATTTGTGCTAAACCCAGG+TGG | + | chr2_4:55374650-55374669 | Msa0336100:three_prime_UTR | 50.0% | |
| TTTGTGCTAAACCCAGGTGG+AGG | + | chr2_4:55374653-55374672 | Msa0336100:three_prime_UTR | 50.0% | |
| GTAGTCATGCAAAAGGGGAG+GGG | - | chr2_4:55374841-55374860 | None:intergenic | 50.0% | |
| GGGAAAGCTGGAACCAGAAG+AGG | - | chr2_4:55373183-55373202 | None:intergenic | 55.0% | |
| GCTACAGAACCAAGCGCCTA+AGG | + | chr2_4:55374298-55374317 | Msa0336100:CDS | 55.0% | |
| AAAGGACGACGGCAAGCCCT+CGG | + | chr2_4:55374106-55374125 | Msa0336100:CDS | 60.0% | |
| CATGCAAAAGGGGAGGGGAG+AGG | - | chr2_4:55374836-55374855 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 55372182 | 55375019 | 55372182 | ID=Msa0336100;Name=Msa0336100 |
| chr2_4 | mRNA | 55372182 | 55375019 | 55372182 | ID=Msa0336100-mRNA-1;Parent=Msa0336100;Name=Msa0336100-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.85|1|1|1|7|568|392 |
| chr2_4 | exon | 55372182 | 55372299 | 55372182 | ID=Msa0336100-mRNA-1:exon:16767;Parent=Msa0336100-mRNA-1 |
| chr2_4 | exon | 55372454 | 55372510 | 55372454 | ID=Msa0336100-mRNA-1:exon:16768;Parent=Msa0336100-mRNA-1 |
| chr2_4 | exon | 55373036 | 55373100 | 55373036 | ID=Msa0336100-mRNA-1:exon:16769;Parent=Msa0336100-mRNA-1 |
| chr2_4 | exon | 55373196 | 55373291 | 55373196 | ID=Msa0336100-mRNA-1:exon:16770;Parent=Msa0336100-mRNA-1 |
| chr2_4 | exon | 55373434 | 55373520 | 55373434 | ID=Msa0336100-mRNA-1:exon:16771;Parent=Msa0336100-mRNA-1 |
| chr2_4 | exon | 55373607 | 55373687 | 55373607 | ID=Msa0336100-mRNA-1:exon:16772;Parent=Msa0336100-mRNA-1 |
| chr2_4 | exon | 55373777 | 55375019 | 55373777 | ID=Msa0336100-mRNA-1:exon:16773;Parent=Msa0336100-mRNA-1 |
| chr2_4 | CDS | 55372182 | 55372299 | 55372182 | ID=Msa0336100-mRNA-1:cds;Parent=Msa0336100-mRNA-1 |
| chr2_4 | CDS | 55372454 | 55372510 | 55372454 | ID=Msa0336100-mRNA-1:cds;Parent=Msa0336100-mRNA-1 |
| chr2_4 | CDS | 55373036 | 55373100 | 55373036 | ID=Msa0336100-mRNA-1:cds;Parent=Msa0336100-mRNA-1 |
| chr2_4 | CDS | 55373196 | 55373291 | 55373196 | ID=Msa0336100-mRNA-1:cds;Parent=Msa0336100-mRNA-1 |
| chr2_4 | CDS | 55373434 | 55373520 | 55373434 | ID=Msa0336100-mRNA-1:cds;Parent=Msa0336100-mRNA-1 |
| chr2_4 | CDS | 55373607 | 55373687 | 55373607 | ID=Msa0336100-mRNA-1:cds;Parent=Msa0336100-mRNA-1 |
| chr2_4 | CDS | 55373777 | 55374451 | 55373777 | ID=Msa0336100-mRNA-1:cds;Parent=Msa0336100-mRNA-1 |
| chr2_4 | three_prime_UTR | 55374452 | 55375019 | 55374452 | ID=Msa0336100-mRNA-1:three_prime_utr;Parent=Msa0336100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
