AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336530 MtrunA17_Chr2g0322871 79.853 546 29 4 1 523 1 488 0.0 853
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336530 AT3G21820.1 57.179 397 131 7 13 386 12 392 9.45e-148 432
Msa0336530 AT3G21820.1 79.487 78 16 0 444 521 392 469 1.12e-36 142

Find 121 sgRNAs with CRISPR-Local

Find 578 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATTCTCCCTTGAAATTTA+TGG 0.067754 2_4:-55966298 Msa0336530:CDS
TAGCATGTTTCACGAATTTA+AGG 0.173479 2_4:+55967718 None:intergenic
AACAAAATTCTAACCTTATC+TGG 0.186766 2_4:+55965991 None:intergenic
TGTTTCCCATGCTTGGAAAT+AGG 0.190121 2_4:-55961214 Msa0336530:three_prime_UTR
GATTCACATACTGAAAATTT+AGG 0.191686 2_4:-55961153 Msa0336530:three_prime_UTR
CCTACCAATTTGAATTTCTA+TGG 0.203278 2_4:+55968800 None:intergenic
GGCTTTACTTGGAAGAATTA+AGG 0.220553 2_4:-55968776 Msa0336530:CDS
TAACTTGTGGTACCTTAATA+TGG 0.256381 2_4:+55966957 None:intergenic
GTTTCCCATGCTTGGAAATA+GGG 0.264660 2_4:-55961213 Msa0336530:three_prime_UTR
TCATTTCTTCTACCATATTA+AGG 0.274998 2_4:-55966969 Msa0336530:CDS
CTATAATATATCTCTTCTTT+TGG 0.279823 2_4:-55966878 Msa0336530:CDS
TTGGCACAAGGAGAGATAAT+AGG 0.307934 2_4:+55969400 None:intergenic
CTTCCGATGACGCGTCATTC+AGG 0.330835 2_4:-55966568 Msa0336530:CDS
CAAGCATCCCTTGCAGACTA+TGG 0.332269 2_4:-55961451 Msa0336530:CDS
TAGACGTCGTCATAGTATTA+TGG 0.360698 2_4:+55961391 None:intergenic
TGTCTTGCTTCAGACAATAA+AGG 0.361870 2_4:+55965692 None:intergenic
TGAAACAAAAGTTGCAACTT+TGG 0.365660 2_4:+55969441 None:intergenic
GAAATTTATGGACATATCAT+TGG 0.368581 2_4:-55966286 Msa0336530:CDS
GGGTAGAGGAACTTTAGTTT+TGG 0.369192 2_4:+55968638 None:intergenic
GGTTCCATAGAAATTCAAAT+TGG 0.384219 2_4:-55968804 Msa0336530:CDS
AGTACTTGGCAATGTAGTTC+TGG 0.386553 2_4:-55968666 Msa0336530:CDS
TATAATTAATTAGTTAATCA+TGG 0.389775 2_4:+55961076 None:intergenic
TCACCTAGAGCATCTAGAAT+TGG 0.391161 2_4:+55965878 None:intergenic
TACAACGTTGTTGATGCTAT+TGG 0.392607 2_4:-55969501 Msa0336530:five_prime_UTR
GCTTTACTTGGAAGAATTAA+GGG 0.393075 2_4:-55968775 Msa0336530:CDS
TCCCATTCTTTACTCTGTAC+TGG 0.399911 2_4:-55967774 Msa0336530:CDS
CAGAGTAAGGCAATCTGAAT+TGG 0.403334 2_4:+55968586 None:intergenic
CTCAAGGACCAAATGCTTGT+TGG 0.404124 2_4:-55968971 Msa0336530:CDS
AATTGGTAGGAGGCTTTACT+TGG 0.404200 2_4:-55968787 Msa0336530:CDS
GTTGATTCCCAACAAGCATT+TGG 0.405040 2_4:+55968963 None:intergenic
GGAGAGATAATAGGGCAAAT+TGG 0.407421 2_4:+55969409 None:intergenic
CAACGATTCCACAACACCTT+CGG 0.414366 2_4:+55968617 None:intergenic
TCAAGGACCAAATGCTTGTT+GGG 0.415492 2_4:-55968970 Msa0336530:CDS
ATTATAGTGGTCTGAAACAC+AGG 0.419773 2_4:+55966894 None:intergenic
TCCTTCACCTCACCAACTTC+AGG 0.424197 2_4:-55969353 Msa0336530:intron
TCATATTTCTCTTTCTCTGC+AGG 0.424740 2_4:+55966922 None:intergenic
AAGAAGAGAAGAGATTTCAT+TGG 0.427487 2_4:+55969381 None:intergenic
GTCCTCATCAACATATGAAA+TGG 0.429546 2_4:+55961492 None:intergenic
TGTAAAACAGTTGGATTATG+TGG 0.436296 2_4:+55961354 None:intergenic
AATTAAAGAGTTGGCATTTG+AGG 0.440320 2_4:-55966540 Msa0336530:intron
GGCTCTTCTTCAATGCACTT+TGG 0.442084 2_4:+55961412 None:intergenic
CAGACAAACAGCAGTGATAT+CGG 0.442581 2_4:+55965829 None:intergenic
TTTAGGTGTGTATGCTGTAA+AGG 0.445469 2_4:-55969017 Msa0336530:intron
TGGCACAAGGAGAGATAATA+GGG 0.449200 2_4:+55969401 None:intergenic
TGTCATGTGCAGAGGCTGAT+TGG 0.451283 2_4:-55967803 Msa0336530:CDS
GTCATGTGCAGAGGCTGATT+GGG 0.454884 2_4:-55967802 Msa0336530:CDS
CTGATGAAGAGGAGAGTACT+TGG 0.457495 2_4:-55968680 Msa0336530:CDS
CATGAACTTCAGTAATGATA+AGG 0.459282 2_4:+55965720 None:intergenic
TTGATTACATTACCTGAAGT+TGG 0.460100 2_4:+55969341 None:intergenic
ATATTGCTGTCTTAAGAAGT+TGG 0.461995 2_4:+55966437 None:intergenic
AAAGAGAACTTCTCAGAGTA+AGG 0.467617 2_4:+55968573 None:intergenic
AACGATTCCACAACACCTTC+GGG 0.468148 2_4:+55968618 None:intergenic
CAGGATGCAAATTAAAGAGT+TGG 0.472781 2_4:-55966549 Msa0336530:CDS
TAGCATTAGGACAACATGAA+TGG 0.475883 2_4:+55962070 None:intergenic
GATGCTTGTCTCTCTTCAAA+TGG 0.476219 2_4:+55961466 None:intergenic
ATCACTTAGTTAAAATACAT+TGG 0.478165 2_4:-55961299 Msa0336530:three_prime_UTR
AAATTCGTGAAACATGCTAA+TGG 0.479165 2_4:-55967714 Msa0336530:intron
AACCTCTTCTCCTTTACTGA+TGG 0.484340 2_4:+55961701 None:intergenic
AGGAGTGCCTCCCTACGTCT+TGG 0.485168 2_4:+55967738 None:intergenic
TGATATGTCCATAAATTTCA+AGG 0.485450 2_4:+55966290 None:intergenic
CATGATGACCAACTTGGAAA+AGG 0.493356 2_4:-55969205 Msa0336530:intron
GTCAAACATGATGACCAACT+TGG 0.495473 2_4:-55969211 Msa0336530:CDS
ATCACAATCATGACTCTCAT+TGG 0.496347 2_4:+55968752 None:intergenic
AAATTCCCTATTTCCAAGCA+TGG 0.498035 2_4:+55961208 None:intergenic
CATCCTGAATGACGCGTCAT+CGG 0.499769 2_4:+55966565 None:intergenic
AGCTTGGAGACCTATATCAA+TGG 0.502175 2_4:-55966854 Msa0336530:CDS
GCTTGGAGACCTATATCAAT+GGG 0.505745 2_4:-55966853 Msa0336530:CDS
TCGGAAGAATCAATATCATC+TGG 0.512871 2_4:+55966584 None:intergenic
ACCTGAAGTTGGTGAGGTGA+AGG 0.512974 2_4:+55969352 None:intergenic
GAGAGTCATGATTGTGATGT+AGG 0.518145 2_4:-55968747 Msa0336530:CDS
ACCAGTACAGAGTAAAGAAT+GGG 0.520722 2_4:+55967773 None:intergenic
AGTTAAAATACATTGGAAAG+AGG 0.520725 2_4:-55961292 Msa0336530:three_prime_UTR
CACCAGTACAGAGTAAAGAA+TGG 0.523065 2_4:+55967772 None:intergenic
TCCTCTACCCGAAGGTGTTG+TGG 0.524481 2_4:-55968625 Msa0336530:CDS
GTGCCATCTTGTAAAACAGT+TGG 0.526936 2_4:+55961345 None:intergenic
GGTTGTTGCTTCTCCTGTGG+AGG 0.529227 2_4:-55966046 Msa0336530:CDS
TAGAAATTCAAATTGGTAGG+AGG 0.529619 2_4:-55968797 Msa0336530:CDS
AATTCCCTATTTCCAAGCAT+GGG 0.529989 2_4:+55961209 None:intergenic
TCCACAACACCTTCGGGTAG+AGG 0.530636 2_4:+55968624 None:intergenic
GCAGTGCAATAATTATTGCT+TGG 0.533837 2_4:+55961727 None:intergenic
ATCTGAAACCATAGTCTGCA+AGG 0.536950 2_4:+55961443 None:intergenic
TTTGGTTGTTGCTTCTCCTG+TGG 0.539607 2_4:-55966049 Msa0336530:CDS
CAACCAATTCTAGATGCTCT+AGG 0.542256 2_4:-55965881 Msa0336530:CDS
GACTATTCTACTTGTTGCGA+AGG 0.556978 2_4:-55965854 Msa0336530:CDS
AGAGGATCAACTTGTTCTCA+AGG 0.562698 2_4:-55968987 Msa0336530:CDS
AACCATTTCATATGTTGATG+AGG 0.563985 2_4:-55961494 Msa0336530:CDS
AAAGAAGAGATATATTATAG+TGG 0.568749 2_4:+55966881 None:intergenic
TGATATGTCGAATCCAGATA+AGG 0.572546 2_4:-55966004 Msa0336530:intron
CTTGTCTCTCTTCAAATGGA+AGG 0.573964 2_4:+55961470 None:intergenic
TATATTCCTCCTTGCTGCAA+AGG 0.577155 2_4:-55967573 Msa0336530:intron
AATGGATTCATCTGATGAAG+AGG 0.579769 2_4:-55968691 Msa0336530:CDS
CCATAGAAATTCAAATTGGT+AGG 0.580291 2_4:-55968800 Msa0336530:CDS
GCACTGCGGTCCATCAGTAA+AGG 0.583080 2_4:-55961711 Msa0336530:CDS
TGGTTCAAACAGCTTTGCAA+AGG 0.585606 2_4:+55962090 None:intergenic
GATATGTCCATAAATTTCAA+GGG 0.590090 2_4:+55966291 None:intergenic
TAAAATACATTGGAAAGAGG+AGG 0.598234 2_4:-55961289 Msa0336530:three_prime_UTR
GTCCATCAGTAAAGGAGAAG+AGG 0.601601 2_4:-55961703 Msa0336530:intron
TGAAGTTGGTGAGGTGAAGG+AGG 0.605547 2_4:+55969355 None:intergenic
TCTGAAACCATAGTCTGCAA+GGG 0.606558 2_4:+55961444 None:intergenic
TTGGAAAGAGGAGGAATGCA+AGG 0.609042 2_4:-55961280 Msa0336530:three_prime_UTR
GTTGTGGAATCGTTGATGAA+TGG 0.612754 2_4:-55968609 Msa0336530:CDS
CTTTGCATGCAGGATAGAGA+TGG 0.614349 2_4:-55961750 Msa0336530:intron
GAGTTCTGATCCAAGACGTA+GGG 0.614600 2_4:-55967748 Msa0336530:CDS
GAAACTCTACCTTTGCAGCA+AGG 0.615703 2_4:+55967564 None:intergenic
TTCTGATCCAAGACGTAGGG+AGG 0.621700 2_4:-55967745 Msa0336530:CDS
TCAAAGTGTCTGTAGGTGGT+GGG 0.622876 2_4:-55966621 Msa0336530:intron
GAATCAACACTCTTTCAACA+AGG 0.626409 2_4:-55968948 Msa0336530:intron
GAGATAATAGGGCAAATTGG+TGG 0.635124 2_4:+55969412 None:intergenic
TGCTGTAAAGGACTTCAAAG+AGG 0.636104 2_4:-55969005 Msa0336530:CDS
TAAGACAGCAATATTTGACA+AGG 0.637239 2_4:-55966428 Msa0336530:CDS
GAAGAGATTTCATTGGCACA+AGG 0.637905 2_4:+55969388 None:intergenic
TACATTACCTGAAGTTGGTG+AGG 0.645717 2_4:+55969346 None:intergenic
AGAGTTCTGATCCAAGACGT+AGG 0.667681 2_4:-55967749 Msa0336530:CDS
ACTAAAGTTCCTCTACCCGA+AGG 0.681829 2_4:-55968633 Msa0336530:CDS
AGTACAGAGTAAAGAATGGG+AGG 0.682996 2_4:+55967776 None:intergenic
ACGACAGAACACAAACGTGA+CGG 0.687749 2_4:+55969476 None:intergenic
AAGGCAGATCAATAATACTG+AGG 0.689142 2_4:+55965739 None:intergenic
TTGTAGCATGTCATGTGCAG+AGG 0.693250 2_4:-55967811 Msa0336530:intron
ACTCTACCTTTGCAGCAAGG+AGG 0.701447 2_4:+55967567 None:intergenic
TAAAGCTTTCAAAAGAGACG+AGG 0.709737 2_4:-55962049 Msa0336530:intron
AAGCAATAATTATTGCACTG+CGG 0.787000 2_4:-55961725 Msa0336530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAAAACTGTTTTTATAT+AGG + chr2_4:55962206-55962225 None:intergenic 10.0%
!! ATGTTTATAAAGTAAATAAA+TGG - chr2_4:55962574-55962593 Msa0336530:intron 10.0%
!! TGTTTATAAAGTAAATAAAT+GGG - chr2_4:55962575-55962594 Msa0336530:intron 10.0%
!! TATCTATATGTTAAATTAAA+GGG + chr2_4:55963433-55963452 None:intergenic 10.0%
!! AATCAATTATTTAAACAAAA+GGG + chr2_4:55967516-55967535 None:intergenic 10.0%
!! AAATCAATTATTTAAACAAA+AGG + chr2_4:55967517-55967536 None:intergenic 10.0%
!!! TTTTTTTTGCTAAAAAAAAA+AGG + chr2_4:55967866-55967885 None:intergenic 10.0%
!! GTAGTTAAAAAAAAAAAAAT+GGG + chr2_4:55968894-55968913 None:intergenic 10.0%
!! TGTAGTTAAAAAAAAAAAAA+TGG + chr2_4:55968895-55968914 None:intergenic 10.0%
!! TAAAATATCAATATATTTGA+CGG - chr2_4:55968956-55968975 Msa0336530:CDS 10.0%
!! ATATATTTGATAAAAACATT+TGG + chr2_4:55968990-55969009 None:intergenic 10.0%
!! TATAATTAATTAGTTAATCA+TGG + chr2_4:55969473-55969492 None:intergenic 10.0%
!! AATGAATAGAAAATGAAAAT+GGG + chr2_4:55961247-55961266 None:intergenic 15.0%
!! AAATGAATAGAAAATGAAAA+TGG + chr2_4:55961248-55961267 None:intergenic 15.0%
!!! TAAATATTTAAAATCAATCG+TGG + chr2_4:55963382-55963401 None:intergenic 15.0%
!!! TATTAATTTTTCATTGTCTA+AGG - chr2_4:55963405-55963424 Msa0336530:intron 15.0%
!! ATCTATATGTTAAATTAAAG+GGG + chr2_4:55963432-55963451 None:intergenic 15.0%
!! CTATCTATATGTTAAATTAA+AGG + chr2_4:55963434-55963453 None:intergenic 15.0%
!!! CTTTAATTTAACATATAGAT+AGG - chr2_4:55963432-55963451 Msa0336530:intron 15.0%
!! TTAGATGCAATATATTAAAT+CGG + chr2_4:55964056-55964075 None:intergenic 15.0%
!! ATATTTAACTGTTATGTTAA+AGG + chr2_4:55964378-55964397 None:intergenic 15.0%
!! AAGTTTAAATATGAAAGAAT+TGG + chr2_4:55966623-55966642 None:intergenic 15.0%
!! AATTCTTTCATATTTAAACT+TGG - chr2_4:55966622-55966641 Msa0336530:intron 15.0%
!!! CGAAACAAAAACTTTTAAAA+CGG + chr2_4:55961655-55961674 None:intergenic 20.0%
!! TCAAATAAATCAATCTAAAC+CGG + chr2_4:55962057-55962076 None:intergenic 20.0%
!! ATAAGCTAAAAACAACTTAT+AGG + chr2_4:55962141-55962160 None:intergenic 20.0%
!! TTTCAATTGACATAAGTTTA+TGG - chr2_4:55962515-55962534 Msa0336530:intron 20.0%
!! TAAACATTGATAAGCTTATA+AGG + chr2_4:55962561-55962580 None:intergenic 20.0%
!! AAAGAAGAGATATATTATAG+TGG + chr2_4:55963668-55963687 None:intergenic 20.0%
!!! CTATAATATATCTCTTCTTT+TGG - chr2_4:55963668-55963687 Msa0336530:intron 20.0%
!!! GGAATTATATTTTCAAATGT+AGG + chr2_4:55963833-55963852 None:intergenic 20.0%
!! AGCAAACACAATAAAATATA+TGG + chr2_4:55964354-55964373 None:intergenic 20.0%
!! ACAGTTAAATATTGTGATAT+TGG - chr2_4:55964386-55964405 Msa0336530:intron 20.0%
!! ATCACTGAAAAACATAATTA+AGG + chr2_4:55964478-55964497 None:intergenic 20.0%
!!! AATTATGTTTTTCAGTGATT+TGG - chr2_4:55964479-55964498 Msa0336530:intron 20.0%
!! AATAAAAACTATCAGTCAAA+AGG + chr2_4:55964912-55964931 None:intergenic 20.0%
!!! AATTTTAGTTTCGCTATTTA+GGG - chr2_4:55965081-55965100 Msa0336530:intron 20.0%
!! AATTCTATTACTTCCAATAA+TGG + chr2_4:55966311-55966330 None:intergenic 20.0%
!! ATTATTTAAACAAAAGGGAA+GGG + chr2_4:55967511-55967530 None:intergenic 20.0%
!! AATTATTTAAACAAAAGGGA+AGG + chr2_4:55967512-55967531 None:intergenic 20.0%
!!! TTTAATTTCGTCATTTTTGT+AGG - chr2_4:55967720-55967739 Msa0336530:CDS 20.0%
!!! TACTCATTAACTTTTTAGTT+TGG + chr2_4:55967924-55967943 None:intergenic 20.0%
!! CTTACATATTGAATGAATAT+AGG + chr2_4:55967952-55967971 None:intergenic 20.0%
!! ATACTGCATACAAATAAAAA+GGG + chr2_4:55967993-55968012 None:intergenic 20.0%
!! ATGTCAATCATATAAAAAGA+AGG + chr2_4:55968017-55968036 None:intergenic 20.0%
!! TATATGATTGACATATTTCA+AGG - chr2_4:55968023-55968042 Msa0336530:intron 20.0%
!! ATATGATTGACATATTTCAA+GGG - chr2_4:55968024-55968043 Msa0336530:intron 20.0%
!!! TAGTGTTATAATGTTTTCTT+GGG + chr2_4:55968306-55968325 None:intergenic 20.0%
!! AAAATGGGATATAAAGATAT+AGG + chr2_4:55968879-55968898 None:intergenic 20.0%
!! AAATGTTAATTAGTTGATCA+TGG + chr2_4:55969015-55969034 None:intergenic 20.0%
!! ATGATCAACTAATTAACATT+TGG - chr2_4:55969014-55969033 Msa0336530:CDS 20.0%
!! ATCACTTAGTTAAAATACAT+TGG - chr2_4:55969247-55969266 Msa0336530:CDS 20.0%
!!! TCAACAATAATTTTACAATG+TGG - chr2_4:55969296-55969315 Msa0336530:intron 20.0%
!!! TTTTCCTCTTTTTTTTATGC+AGG - chr2_4:55961265-55961284 Msa0336530:three_prime_UTR 25.0%
! TATTCCTGCATAAAAAAAAG+AGG + chr2_4:55961272-55961291 None:intergenic 25.0%
!! ATCAAAACATTTTCTCTTCA+AGG - chr2_4:55961294-55961313 Msa0336530:three_prime_UTR 25.0%
! ATAAAAAAGAATTGGTGTGA+TGG + chr2_4:55961393-55961412 None:intergenic 25.0%
! GCTTAATTAATTTCTGATTC+TGG - chr2_4:55961501-55961520 Msa0336530:intron 25.0%
!!! TTCTGATTCTGGAAAATTTT+AGG - chr2_4:55961512-55961531 Msa0336530:intron 25.0%
! ATTTGTGACAATATTTCACA+AGG + chr2_4:55962394-55962413 None:intergenic 25.0%
! ATTGAAAAATTCCCATAACT+TGG + chr2_4:55962502-55962521 None:intergenic 25.0%
! AAAAATGTCAACAACAAATG+TGG + chr2_4:55962898-55962917 None:intergenic 25.0%
! TACAAAATGTTGTCAAATAG+TGG - chr2_4:55963294-55963313 Msa0336530:intron 25.0%
! TCATTTCTTCTACCATATTA+AGG - chr2_4:55963577-55963596 Msa0336530:intron 25.0%
!! TTTTTGTATCCCATTGATAT+AGG + chr2_4:55963705-55963724 None:intergenic 25.0%
! TATCAATGGGATACAAAAAA+AGG - chr2_4:55963706-55963725 Msa0336530:intron 25.0%
! CAGAAGTCAAAATAAGATAA+AGG + chr2_4:55963854-55963873 None:intergenic 25.0%
! TATCCTTACATATGCTAATT+TGG - chr2_4:55964154-55964173 Msa0336530:intron 25.0%
! GATATGTCCATAAATTTCAA+GGG + chr2_4:55964258-55964277 None:intergenic 25.0%
! TGATATGTCCATAAATTTCA+AGG + chr2_4:55964259-55964278 None:intergenic 25.0%
! GAAATTTATGGACATATCAT+TGG - chr2_4:55964260-55964279 Msa0336530:intron 25.0%
!!! CAAATTTTCAGTTTGCTTAA+TGG + chr2_4:55964417-55964436 None:intergenic 25.0%
! AACAAAATTCTAACCTTATC+TGG + chr2_4:55964558-55964577 None:intergenic 25.0%
! TTACTTTGTGTTATCATTGA+TGG - chr2_4:55964618-55964637 Msa0336530:intron 25.0%
!!! GATTATGCAATTGTGTTTTT+TGG - chr2_4:55964966-55964985 Msa0336530:intron 25.0%
!!! CAATTTTAGTTTCGCTATTT+AGG - chr2_4:55965080-55965099 Msa0336530:intron 25.0%
!! TAGCAGATTTAGTGTAATTT+TGG - chr2_4:55965129-55965148 Msa0336530:intron 25.0%
!!! TTTAGTGTAATTTTGGCAAA+AGG - chr2_4:55965136-55965155 Msa0336530:intron 25.0%
! GTACAATCTTATGATAGAAT+TGG + chr2_4:55965664-55965683 None:intergenic 25.0%
! ATCATAAGATTGTACTAAGA+AGG - chr2_4:55965669-55965688 Msa0336530:intron 25.0%
! TCTTGACAAAATGGATATTT+GGG - chr2_4:55965777-55965796 Msa0336530:CDS 25.0%
!!! ACATTCATCTCTTTTTTCAA+TGG + chr2_4:55966674-55966693 None:intergenic 25.0%
! GGAAGTAATAGAATTGTTAT+TGG - chr2_4:55966316-55966335 Msa0336530:intron 25.0%
! ACAAATTTGGAAACAAATAG+TGG + chr2_4:55966351-55966370 None:intergenic 25.0%
!!! ACATTCATCTCTTTTTTCAA+AGG - chr2_4:55966674-55966693 Msa0336530:intron 25.0%
! CATCAATCTTATGATAGAAT+TGG - chr2_4:55966904-55966923 Msa0336530:CDS 25.0%
! TGAAGAAGAAAAAGAAAAGA+GGG + chr2_4:55967421-55967440 None:intergenic 25.0%
! ATGAAGAAGAAAAAGAAAAG+AGG + chr2_4:55967422-55967441 None:intergenic 25.0%
! ATCATGTTAATAGCATACAA+CGG + chr2_4:55967771-55967790 None:intergenic 25.0%
! CATACTGCATACAAATAAAA+AGG + chr2_4:55967994-55968013 None:intergenic 25.0%
!! AAAAATCCTTTTATCACTAG+CGG + chr2_4:55968061-55968080 None:intergenic 25.0%
!! CATAACATTTGTAATTTGCA+AGG + chr2_4:55968208-55968227 None:intergenic 25.0%
!! GTAGTGTTATAATGTTTTCT+TGG + chr2_4:55968307-55968326 None:intergenic 25.0%
! GATTATTCCTATAATCATCA+AGG + chr2_4:55968329-55968348 None:intergenic 25.0%
! GATGATAATCAAAATGAATC+TGG + chr2_4:55968351-55968370 None:intergenic 25.0%
! ATCTACTTAAATTGTATTCC+AGG - chr2_4:55968420-55968439 Msa0336530:intron 25.0%
!!! TTCGATTTAGTTTTAGTTGA+TGG - chr2_4:55968556-55968575 Msa0336530:intron 25.0%
! ACAATCGAATTATACTACTT+TGG + chr2_4:55968603-55968622 None:intergenic 25.0%
!! AATTCGATTGTTTTCTTTAG+CGG - chr2_4:55968612-55968631 Msa0336530:CDS 25.0%
! AAAGAGGTAGTAAAATCTTT+AGG + chr2_4:55968780-55968799 None:intergenic 25.0%
! TCAACTAATTAACATTTGGA+AGG - chr2_4:55969018-55969037 Msa0336530:intron 25.0%
! AGTTAAAATACATTGGAAAG+AGG - chr2_4:55969254-55969273 Msa0336530:CDS 25.0%
! GATTCACATACTGAAAATTT+AGG - chr2_4:55969393-55969412 Msa0336530:CDS 25.0%
TGAAACAAAAGTTGCAACTT+TGG + chr2_4:55961108-55961127 None:intergenic 30.0%
!! AGTTGCAACTTTTGTTTCAA+TGG - chr2_4:55961109-55961128 Msa0336530:three_prime_UTR 30.0%
AAGAAGAGAAGAGATTTCAT+TGG + chr2_4:55961168-55961187 None:intergenic 30.0%
TTGATTACATTACCTGAAGT+TGG + chr2_4:55961208-55961227 None:intergenic 30.0%
! AATGAATACCTTTTCCAAGT+TGG + chr2_4:55961352-55961371 None:intergenic 30.0%
GACATAGAAGAGTAAATGTT+AGG - chr2_4:55961468-55961487 Msa0336530:CDS 30.0%
GGTTCCATAGAAATTCAAAT+TGG - chr2_4:55961742-55961761 Msa0336530:intron 30.0%
CCTACCAATTTGAATTTCTA+TGG + chr2_4:55961749-55961768 None:intergenic 30.0%
CCATAGAAATTCAAATTGGT+AGG - chr2_4:55961746-55961765 Msa0336530:intron 30.0%
TAGAAATTCAAATTGGTAGG+AGG - chr2_4:55961749-55961768 Msa0336530:intron 30.0%
GCTTTACTTGGAAGAATTAA+GGG - chr2_4:55961771-55961790 Msa0336530:intron 30.0%
TTCGAAAAACTGTCATGAAA+TGG - chr2_4:55961837-55961856 Msa0336530:intron 30.0%
TTATTTCCATAAGCTCTTCA+AGG - chr2_4:55962157-55962176 Msa0336530:intron 30.0%
! TTATTTCTTCAACCAACCAT+AGG + chr2_4:55962290-55962309 None:intergenic 30.0%
!! AGTAGTTGTTAATTTGTGCT+CGG + chr2_4:55962363-55962382 None:intergenic 30.0%
TAGCATGTTTCACGAATTTA+AGG + chr2_4:55962831-55962850 None:intergenic 30.0%
AAATTCGTGAAACATGCTAA+TGG - chr2_4:55962832-55962851 Msa0336530:intron 30.0%
ATTATCGATGTCCATAACAA+AGG + chr2_4:55962865-55962884 None:intergenic 30.0%
TGTATAAACAGTATGTGTGT+TGG + chr2_4:55963065-55963084 None:intergenic 30.0%
! GTGTATTTGATAATCTTACC+TGG - chr2_4:55963086-55963105 Msa0336530:intron 30.0%
GCTTACTAGATTTATCTGAT+TGG - chr2_4:55963528-55963547 Msa0336530:intron 30.0%
! TAACTTGTGGTACCTTAATA+TGG + chr2_4:55963592-55963611 None:intergenic 30.0%
!!! GACAATTTGCTTTTAACTTG+TGG + chr2_4:55963605-55963624 None:intergenic 30.0%
AATTAAAGAGTTGGCATTTG+AGG - chr2_4:55964006-55964025 Msa0336530:intron 30.0%
ATATTGCTGTCTTAAGAAGT+TGG + chr2_4:55964112-55964131 None:intergenic 30.0%
TAAGACAGCAATATTTGACA+AGG - chr2_4:55964118-55964137 Msa0336530:intron 30.0%
TTAGCATATGTAAGGATACA+TGG + chr2_4:55964152-55964171 None:intergenic 30.0%
TCACCAAATTAGCATATGTA+AGG + chr2_4:55964160-55964179 None:intergenic 30.0%
AGAATACTGATAAGAGTCAA+GGG + chr2_4:55964235-55964254 None:intergenic 30.0%
GTATTCTCCCTTGAAATTTA+TGG - chr2_4:55964248-55964267 Msa0336530:intron 30.0%
TATAAAAAGTAATCCTCCAC+AGG + chr2_4:55964516-55964535 None:intergenic 30.0%
CGAGATAAAATGTTAAAGCA+AGG + chr2_4:55964583-55964602 None:intergenic 30.0%
CATGAACTTCAGTAATGATA+AGG + chr2_4:55964829-55964848 None:intergenic 30.0%
!! GATAGTTTTTATTTGCCAAG+TGG - chr2_4:55964919-55964938 Msa0336530:intron 30.0%
!!! GCAATTGTGTTTTTTGGTTT+TGG - chr2_4:55964972-55964991 Msa0336530:intron 30.0%
!!! ATTGTGTTTTTTGGTTTTGG+AGG - chr2_4:55964975-55964994 Msa0336530:intron 30.0%
! TTTGGCAAAAGGAGAATTTT+AGG - chr2_4:55965147-55965166 Msa0336530:intron 30.0%
! TTGGCAAAAGGAGAATTTTA+GGG - chr2_4:55965148-55965167 Msa0336530:intron 30.0%
!! AATTATTTAACTTGGCTGCT+AGG + chr2_4:55965190-55965209 None:intergenic 30.0%
ACAATGATGAAGCCATATAT+AGG + chr2_4:55965273-55965292 None:intergenic 30.0%
GCAAATCCAAACCAAATTTA+AGG - chr2_4:55965318-55965337 Msa0336530:intron 30.0%
AATCAATCAAGCAATGATCA+AGG + chr2_4:55965526-55965545 None:intergenic 30.0%
TTGATCATTGCTTGATTGAT+TGG - chr2_4:55965525-55965544 Msa0336530:intron 30.0%
CTTGAATTGGATCTATTTGT+TGG + chr2_4:55965558-55965577 None:intergenic 30.0%
AATTCAAGTACCTTCAAGAA+CGG - chr2_4:55965570-55965589 Msa0336530:intron 30.0%
TTGAAGTTCTCAAAAAACCA+AGG + chr2_4:55965709-55965728 None:intergenic 30.0%
CTCTTGACAAAATGGATATT+TGG - chr2_4:55965776-55965795 Msa0336530:CDS 30.0%
! TAGCTGTGAGTAGTATTTTT+AGG + chr2_4:55965892-55965911 None:intergenic 30.0%
ACAGCAAGTTTATATCATTG+AGG - chr2_4:55965912-55965931 Msa0336530:intron 30.0%
CAGCAAGTTTATATCATTGA+GGG - chr2_4:55965913-55965932 Msa0336530:intron 30.0%
!! GGCACATTTTATTTCTTATG+TGG - chr2_4:55966031-55966050 Msa0336530:CDS 30.0%
CACAAATTTGGAAACAAATC+TGG - chr2_4:55966277-55966296 Msa0336530:CDS 30.0%
GAAGTTTGGCAAAAGTTTAT+GGG + chr2_4:55966728-55966747 None:intergenic 30.0%
AGAAGTTTGGCAAAAGTTTA+TGG + chr2_4:55966729-55966748 None:intergenic 30.0%
GAAGTTCTTGAAAAAGCAAA+AGG - chr2_4:55966858-55966877 Msa0336530:CDS 30.0%
CAATTATTCATGTGGATCAT+GGG + chr2_4:55966941-55966960 None:intergenic 30.0%
GATGAGAATAATTGTGGAAA+TGG - chr2_4:55967152-55967171 Msa0336530:intron 30.0%
!! ACTGAAATTTGGTTTGGATT+TGG - chr2_4:55967236-55967255 Msa0336530:intron 30.0%
GAAGAAGAAAAAGAAAAGAG+GGG + chr2_4:55967420-55967439 None:intergenic 30.0%
CAAGATGATGAAATCACAAA+AGG + chr2_4:55967559-55967578 None:intergenic 30.0%
! CTTTTGTGATTTCATCATCT+TGG - chr2_4:55967557-55967576 Msa0336530:intron 30.0%
! AATGACGAAATTAAAGTGTC+TGG + chr2_4:55967715-55967734 None:intergenic 30.0%
AAAAACAGTGTAATCACTAG+CGG + chr2_4:55968106-55968125 None:intergenic 30.0%
!!! TTACACTGTTTTTTCAACGA+CGG - chr2_4:55968113-55968132 Msa0336530:intron 30.0%
CTCAATTTATGTTTAAGGAG+GGG + chr2_4:55968164-55968183 None:intergenic 30.0%
CCTCAATTTATGTTTAAGGA+GGG + chr2_4:55968165-55968184 None:intergenic 30.0%
CCTCCTTAAACATAAATTGA+GGG - chr2_4:55968163-55968182 Msa0336530:intron 30.0%
GATCCCTCAATTTATGTTTA+AGG + chr2_4:55968169-55968188 None:intergenic 30.0%
TAAACATAAATTGAGGGATC+AGG - chr2_4:55968169-55968188 Msa0336530:intron 30.0%
! TTATAATGTTTTCTTGGGCA+GGG + chr2_4:55968301-55968320 None:intergenic 30.0%
! AACACTACCTTGATGATTAT+AGG - chr2_4:55968319-55968338 Msa0336530:intron 30.0%
!!! TCATTTTGATTATCATCCCT+AGG - chr2_4:55968354-55968373 Msa0336530:intron 30.0%
AGGATATATTCTAACTCCTA+GGG + chr2_4:55968373-55968392 None:intergenic 30.0%
! CCACTGGTTAAAAATAAATC+AGG + chr2_4:55968393-55968412 None:intergenic 30.0%
!!! CCTGATTTATTTTTAACCAG+TGG - chr2_4:55968390-55968409 Msa0336530:intron 30.0%
TAAGTAGATTTATCAACCAC+TGG + chr2_4:55968409-55968428 None:intergenic 30.0%
!! CTTTTGAAAGCTTTAGCATT+AGG + chr2_4:55968492-55968511 None:intergenic 30.0%
CTTTCTCATGTAAGCAATAT+GGG + chr2_4:55968696-55968715 None:intergenic 30.0%
TCTTTCTCATGTAAGCAATA+TGG + chr2_4:55968697-55968716 None:intergenic 30.0%
AAGCAATAATTATTGCACTG+CGG - chr2_4:55968821-55968840 Msa0336530:CDS 30.0%
AACCATTTCATATGTTGATG+AGG - chr2_4:55969052-55969071 Msa0336530:intron 30.0%
TGTAAAACAGTTGGATTATG+TGG + chr2_4:55969195-55969214 None:intergenic 30.0%
! AATCCAACTGTTTTACAAGA+TGG - chr2_4:55969198-55969217 Msa0336530:intron 30.0%
TAAAATACATTGGAAAGAGG+AGG - chr2_4:55969257-55969276 Msa0336530:CDS 30.0%
TACAACGTTGTTGATGCTAT+TGG - chr2_4:55961045-55961064 Msa0336530:three_prime_UTR 35.0%
TTTAGGTGTGTATGCTGTAA+AGG - chr2_4:55961529-55961548 Msa0336530:intron 35.0%
GAATCAACACTCTTTCAACA+AGG - chr2_4:55961598-55961617 Msa0336530:intron 35.0%
! AGCTTCTGCTTTCGTTTTAT+TGG - chr2_4:55961721-55961740 Msa0336530:CDS 35.0%
GGCTTTACTTGGAAGAATTA+AGG - chr2_4:55961770-55961789 Msa0336530:intron 35.0%
ATCACAATCATGACTCTCAT+TGG + chr2_4:55961797-55961816 None:intergenic 35.0%
! AATGGATTCATCTGATGAAG+AGG - chr2_4:55961855-55961874 Msa0336530:intron 35.0%
AAAGAGAACTTCTCAGAGTA+AGG + chr2_4:55961976-55961995 None:intergenic 35.0%
CCATAGGATTAGATCATGAT+TGG + chr2_4:55962274-55962293 None:intergenic 35.0%
CCAATCATGATCTAATCCTA+TGG - chr2_4:55962271-55962290 Msa0336530:intron 35.0%
TCATGATCTAATCCTATGGT+TGG - chr2_4:55962275-55962294 Msa0336530:intron 35.0%
AAGAAATCAGAAGCTGAGTA+TGG + chr2_4:55962434-55962453 None:intergenic 35.0%
ACTTGGAAGCTAATCGAAAT+TGG + chr2_4:55962485-55962504 None:intergenic 35.0%
!! TTCGATTAGCTTCCAAGTTA+TGG - chr2_4:55962487-55962506 Msa0336530:intron 35.0%
!! TCGATTAGCTTCCAAGTTAT+GGG - chr2_4:55962488-55962507 Msa0336530:intron 35.0%
ACCAGTACAGAGTAAAGAAT+GGG + chr2_4:55962776-55962795 None:intergenic 35.0%
ATGGTAAGACTCCTTTGTTA+TGG - chr2_4:55962851-55962870 Msa0336530:intron 35.0%
ACTCTGATGATAATAATGCC+AGG + chr2_4:55963107-55963126 None:intergenic 35.0%
TTGTCAAATAGTGGCTATAG+TGG - chr2_4:55963303-55963322 Msa0336530:intron 35.0%
! ATAGCAGTTTGTTCAAACTC+TGG + chr2_4:55963349-55963368 None:intergenic 35.0%
GATTTATCTGATTGGAAACC+TGG - chr2_4:55963536-55963555 Msa0336530:intron 35.0%
ATATGGTAGAAGAAATGACC+TGG + chr2_4:55963575-55963594 None:intergenic 35.0%
TCATATTTCTCTTTCTCTGC+AGG + chr2_4:55963627-55963646 None:intergenic 35.0%
! ATTATAGTGGTCTGAAACAC+AGG + chr2_4:55963655-55963674 None:intergenic 35.0%
!! TATCTCTTCTTTTGGAAGCT+TGG - chr2_4:55963676-55963695 Msa0336530:intron 35.0%
TCGGAAGAATCAATATCATC+TGG + chr2_4:55963965-55963984 None:intergenic 35.0%
CAGGATGCAAATTAAAGAGT+TGG - chr2_4:55963997-55964016 Msa0336530:intron 35.0%
GAGAATACTGATAAGAGTCA+AGG + chr2_4:55964236-55964255 None:intergenic 35.0%
AAAACAAAGTCCCACAAAGT+TGG + chr2_4:55964314-55964333 None:intergenic 35.0%
TGATATGTCGAATCCAGATA+AGG - chr2_4:55964542-55964561 Msa0336530:intron 35.0%
AAGGCAGATCAATAATACTG+AGG + chr2_4:55964810-55964829 None:intergenic 35.0%
TGTCTTGCTTCAGACAATAA+AGG + chr2_4:55964857-55964876 None:intergenic 35.0%
! GACAACAGTCTTCAAGTTAA+AGG - chr2_4:55964873-55964892 Msa0336530:intron 35.0%
!!! TGTTTTTTGGTTTTGGAGGA+AGG - chr2_4:55964979-55964998 Msa0336530:intron 35.0%
! GCTATAAGTGTTGCAAATAG+TGG - chr2_4:55965001-55965020 Msa0336530:intron 35.0%
GTACTATAGCACTTTAGCAT+TGG - chr2_4:55965023-55965042 Msa0336530:intron 35.0%
CTAAATCTGCTAGCATAAAC+TGG + chr2_4:55965121-55965140 None:intergenic 35.0%
GCGGCACAAATTATTTAACT+TGG + chr2_4:55965198-55965217 None:intergenic 35.0%
!! TGGTTTGGATTTGCACTTTT+TGG + chr2_4:55965312-55965331 None:intergenic 35.0%
GTAAGGCCTTAAATTTGGTT+TGG + chr2_4:55965327-55965346 None:intergenic 35.0%
GACATGTAAGGCCTTAAATT+TGG + chr2_4:55965332-55965351 None:intergenic 35.0%
TATGAATTGGACAGGAACAA+GGG + chr2_4:55967195-55967214 None:intergenic 35.0%
ATATGAATTGGACAGGAACA+AGG + chr2_4:55967194-55967213 None:intergenic 35.0%
GATGAGAATAAGTGTGGAAA+TGG + chr2_4:55965405-55965424 None:intergenic 35.0%
ACTATGGAACTCAACCTTAA+AGG - chr2_4:55965437-55965456 Msa0336530:intron 35.0%
!! GTTCTTGAAGGTACTTGAAT+TGG + chr2_4:55965571-55965590 None:intergenic 35.0%
! ATAATTGCTACACCCTTTTC+CGG + chr2_4:55965614-55965633 None:intergenic 35.0%
TGTACTAAGAAGGTTCTCAA+TGG - chr2_4:55965679-55965698 Msa0336530:intron 35.0%
TTCTCTTGCATGAATCTGAA+GGG + chr2_4:55965820-55965839 None:intergenic 35.0%
TATTTCTTATGTGGTGTCCT+TGG - chr2_4:55966040-55966059 Msa0336530:CDS 35.0%
! CGGAATTGGTAACACAAATT+TGG + chr2_4:55966364-55966383 None:intergenic 35.0%
TTGTGTTACCAATTCCGTTT+CGG - chr2_4:55966367-55966386 Msa0336530:intron 35.0%
GAGTGAATATTGTGATTACG+TGG + chr2_4:55966472-55966491 None:intergenic 35.0%
ATGAATGTTCGTACTTTAGG+AGG + chr2_4:55966662-55966681 None:intergenic 35.0%
GAGATGAATGTTCGTACTTT+AGG + chr2_4:55966665-55966684 None:intergenic 35.0%
! AAGGTGAGTTGACATCAATT+CGG - chr2_4:55966693-55966712 Msa0336530:intron 35.0%
GCAAAAGTTTATGGGATTGA+GGG + chr2_4:55966720-55966739 None:intergenic 35.0%
TCATAAGATTGATGCTGAGA+AGG + chr2_4:55966898-55966917 None:intergenic 35.0%
GCAATTATTCATGTGGATCA+TGG + chr2_4:55966942-55966961 None:intergenic 35.0%
AAGAACAGTTAAGCCAATTG+TGG + chr2_4:55966983-55967002 None:intergenic 35.0%
! ACAATTGGCTTAACTGTTCT+TGG - chr2_4:55966982-55967001 Msa0336530:intron 35.0%
CATATCAGTATCCAAATCCA+GGG - chr2_4:55967068-55967087 Msa0336530:intron 35.0%
GAGGTAGATGAGAATAATTG+TGG - chr2_4:55967146-55967165 Msa0336530:intron 35.0%
AATTGTGGAAATGGTACAGA+TGG - chr2_4:55967161-55967180 Msa0336530:intron 35.0%
ATATGAATTGGACAGGAACA+AGG - chr2_4:55967194-55967213 Msa0336530:intron 35.0%
TATGAATTGGACAGGAACAA+GGG - chr2_4:55967195-55967214 Msa0336530:intron 35.0%
GACATGTAAGGACTGAAATT+TGG - chr2_4:55967225-55967244 Msa0336530:intron 35.0%
GTAAGGACTGAAATTTGGTT+TGG - chr2_4:55967230-55967249 Msa0336530:intron 35.0%
AAAAAGAAAAGAGGGGTAAG+TGG + chr2_4:55967413-55967432 None:intergenic 35.0%
TTCTTCTTCATCAACTCAAG+AGG - chr2_4:55967431-55967450 Msa0336530:intron 35.0%
TCTTCTTCATCAACTCAAGA+GGG - chr2_4:55967432-55967451 Msa0336530:intron 35.0%
! GGTAGTTTAAGCCCAATTTT+CGG - chr2_4:55967454-55967473 Msa0336530:intron 35.0%
!! ATCTATCGATTTGAACCGAA+CGG + chr2_4:55967620-55967639 None:intergenic 35.0%
TGGTTGAATCTGCAATGAAT+CGG + chr2_4:55967647-55967666 None:intergenic 35.0%
! GCAGATTCAACCAATGATTT+TGG - chr2_4:55967654-55967673 Msa0336530:intron 35.0%
CTCGAAGATACCAAAATCAT+TGG + chr2_4:55967667-55967686 None:intergenic 35.0%
! GTATCTTCGAGTTATAGATC+CGG - chr2_4:55967676-55967695 Msa0336530:intron 35.0%
GTAGGCTTATCCATAATTGT+AGG - chr2_4:55967738-55967757 Msa0336530:CDS 35.0%
TACAAATAAAAAGGGAGTGG+AGG + chr2_4:55967985-55968004 None:intergenic 35.0%
GCATACAAATAAAAAGGGAG+TGG + chr2_4:55967988-55968007 None:intergenic 35.0%
CCCTCCTTAAACATAAATTG+AGG - chr2_4:55968162-55968181 Msa0336530:intron 35.0%
CCCTCAATTTATGTTTAAGG+AGG + chr2_4:55968166-55968185 None:intergenic 35.0%
! GTTATAATGTTTTCTTGGGC+AGG + chr2_4:55968302-55968321 None:intergenic 35.0%
CAGGATATATTCTAACTCCT+AGG + chr2_4:55968374-55968393 None:intergenic 35.0%
AAAGGAAAAAATGCAGTTCC+TGG + chr2_4:55968441-55968460 None:intergenic 35.0%
TAGCATTAGGACAACATGAA+TGG + chr2_4:55968479-55968498 None:intergenic 35.0%
TAAAGCTTTCAAAAGAGACG+AGG - chr2_4:55968497-55968516 Msa0336530:intron 35.0%
GCAGTGCAATAATTATTGCT+TGG + chr2_4:55968822-55968841 None:intergenic 35.0%
GTCCTCATCAACATATGAAA+TGG + chr2_4:55969057-55969076 None:intergenic 35.0%
TAGACGTCGTCATAGTATTA+TGG + chr2_4:55969158-55969177 None:intergenic 35.0%
!! AAGTTTTTGTTTCCCATGCT+TGG - chr2_4:55969325-55969344 Msa0336530:intron 35.0%
AATTCCCTATTTCCAAGCAT+GGG + chr2_4:55969340-55969359 None:intergenic 35.0%
AAATTCCCTATTTCCAAGCA+TGG + chr2_4:55969341-55969360 None:intergenic 35.0%
GAGATAATAGGGCAAATTGG+TGG + chr2_4:55961137-55961156 None:intergenic 40.0%
GGAGAGATAATAGGGCAAAT+TGG + chr2_4:55961140-55961159 None:intergenic 40.0%
TGGCACAAGGAGAGATAATA+GGG + chr2_4:55961148-55961167 None:intergenic 40.0%
TTGGCACAAGGAGAGATAAT+AGG + chr2_4:55961149-55961168 None:intergenic 40.0%
GAAGAGATTTCATTGGCACA+AGG + chr2_4:55961161-55961180 None:intergenic 40.0%
!! TACATTACCTGAAGTTGGTG+AGG + chr2_4:55961203-55961222 None:intergenic 40.0%
GTCAAACATGATGACCAACT+TGG - chr2_4:55961335-55961354 Msa0336530:three_prime_UTR 40.0%
CATGATGACCAACTTGGAAA+AGG - chr2_4:55961341-55961360 Msa0336530:three_prime_UTR 40.0%
TGCTGTAAAGGACTTCAAAG+AGG - chr2_4:55961541-55961560 Msa0336530:intron 40.0%
! AGAGGATCAACTTGTTCTCA+AGG - chr2_4:55961559-55961578 Msa0336530:intron 40.0%
TCAAGGACCAAATGCTTGTT+GGG - chr2_4:55961576-55961595 Msa0336530:intron 40.0%
! GTTGATTCCCAACAAGCATT+TGG + chr2_4:55961586-55961605 None:intergenic 40.0%
AATTGGTAGGAGGCTTTACT+TGG - chr2_4:55961759-55961778 Msa0336530:intron 40.0%
GAGAGTCATGATTGTGATGT+AGG - chr2_4:55961799-55961818 Msa0336530:intron 40.0%
AGTACTTGGCAATGTAGTTC+TGG - chr2_4:55961880-55961899 Msa0336530:intron 40.0%
!! GGGTAGAGGAACTTTAGTTT+TGG + chr2_4:55961911-55961930 None:intergenic 40.0%
! GTTGTGGAATCGTTGATGAA+TGG - chr2_4:55961937-55961956 Msa0336530:intron 40.0%
CAGAGTAAGGCAATCTGAAT+TGG + chr2_4:55961963-55961982 None:intergenic 40.0%
TTACTACTGCAGGTAAAAGC+CGG - chr2_4:55962035-55962054 Msa0336530:intron 40.0%
AAACTGCCTTGAAGAGCTTA+TGG + chr2_4:55962166-55962185 None:intergenic 40.0%
TAAGCTCTTCAAGGCAGTTT+AGG - chr2_4:55962166-55962185 Msa0336530:intron 40.0%
!! AGTTGTTAATTTGTGCTCGG+TGG + chr2_4:55962360-55962379 None:intergenic 40.0%
TGTCACAAATGAATGCTGCA+TGG - chr2_4:55962404-55962423 Msa0336530:intron 40.0%
GTCACAAATGAATGCTGCAT+GGG - chr2_4:55962405-55962424 Msa0336530:intron 40.0%
TCACAAATGAATGCTGCATG+GGG - chr2_4:55962406-55962425 Msa0336530:intron 40.0%
AGTACAGAGTAAAGAATGGG+AGG + chr2_4:55962773-55962792 None:intergenic 40.0%
TCCCATTCTTTACTCTGTAC+TGG - chr2_4:55962772-55962791 Msa0336530:intron 40.0%
CACCAGTACAGAGTAAAGAA+TGG + chr2_4:55962777-55962796 None:intergenic 40.0%
TATATTCCTCCTTGCTGCAA+AGG - chr2_4:55962973-55962992 Msa0336530:intron 40.0%
TGCAGTAAATGCTTGTAGTC+TGG - chr2_4:55963143-55963162 Msa0336530:intron 40.0%
!!! GACCTAGTTTTGTCACATAG+AGG - chr2_4:55963224-55963243 Msa0336530:intron 40.0%
TGCCTCTATGTGACAAAACT+AGG + chr2_4:55963229-55963248 None:intergenic 40.0%
CCTGGTGATAAAATACATCC+AGG + chr2_4:55963557-55963576 None:intergenic 40.0%
! CCTGGATGTATTTTATCACC+AGG - chr2_4:55963554-55963573 Msa0336530:intron 40.0%
AGCTTGGAGACCTATATCAA+TGG - chr2_4:55963692-55963711 Msa0336530:intron 40.0%
GCTTGGAGACCTATATCAAT+GGG - chr2_4:55963693-55963712 Msa0336530:intron 40.0%
ACTGATAAGAGTCAAGGGTT+TGG + chr2_4:55964230-55964249 None:intergenic 40.0%
ATCTGTAAGAGCCAACTTTG+TGG - chr2_4:55964300-55964319 Msa0336530:intron 40.0%
TCTGTAAGAGCCAACTTTGT+GGG - chr2_4:55964301-55964320 Msa0336530:intron 40.0%
CAACCAATTCTAGATGCTCT+AGG - chr2_4:55964665-55964684 Msa0336530:intron 40.0%
! TCACCTAGAGCATCTAGAAT+TGG + chr2_4:55964671-55964690 None:intergenic 40.0%
! GACTATTCTACTTGTTGCGA+AGG - chr2_4:55964692-55964711 Msa0336530:intron 40.0%
CAGACAAACAGCAGTGATAT+CGG + chr2_4:55964720-55964739 None:intergenic 40.0%
AAAGCTAACTTCAAGCCACT+TGG + chr2_4:55964937-55964956 None:intergenic 40.0%
! TTGTGTCACAGTTTTCGTAG+CGG + chr2_4:55965063-55965082 None:intergenic 40.0%
GCTAGCATAAACTGGAATAG+TGG + chr2_4:55965113-55965132 None:intergenic 40.0%
GCTTTCGTTTGGCCTATATA+TGG - chr2_4:55965258-55965277 Msa0336530:intron 40.0%
CACTGTGATATGAATTGGAC+AGG + chr2_4:55967187-55967206 None:intergenic 40.0%
GGTGACACTGTGATATGAAT+TGG + chr2_4:55967182-55967201 None:intergenic 40.0%
AAGTGTGGAAATGGTAGAGA+TGG + chr2_4:55965396-55965415 None:intergenic 40.0%
TCATATCAGCATCCACATTC+CGG + chr2_4:55965490-55965509 None:intergenic 40.0%
AATGGCTTAACCGTTCTTGA+AGG + chr2_4:55965583-55965602 None:intergenic 40.0%
AAGAACGGTTAAGCCATTTG+TGG - chr2_4:55965585-55965604 Msa0336530:intron 40.0%
GCAATTATTCCTGTGGATCA+AGG - chr2_4:55965626-55965645 Msa0336530:intron 40.0%
AAGTACTTTCCTTGATCCAC+AGG + chr2_4:55965638-55965657 None:intergenic 40.0%
ACTAAGAAGGTTCTCAATGG+AGG - chr2_4:55965682-55965701 Msa0336530:CDS 40.0%
CTAAGAAGGTTCTCAATGGA+GGG - chr2_4:55965683-55965702 Msa0336530:CDS 40.0%
CTTCTCTTGCATGAATCTGA+AGG + chr2_4:55965821-55965840 None:intergenic 40.0%
CTTCAGATTCATGCAAGAGA+AGG - chr2_4:55965819-55965838 Msa0336530:CDS 40.0%
AGATTCATGCAAGAGAAGGT+TGG - chr2_4:55965823-55965842 Msa0336530:CDS 40.0%
!! AAAGGTATTGGAGCTTTCCT+AGG - chr2_4:55965847-55965866 Msa0336530:CDS 40.0%
! ATGGTGAGTTGACATCGATT+TGG + chr2_4:55965940-55965959 None:intergenic 40.0%
ATGAATGTTCGCACTCTAGA+AGG - chr2_4:55965971-55965990 Msa0336530:intron 40.0%
!! AAGACGACAGCTTTTGAGAA+TGG - chr2_4:55966104-55966123 Msa0336530:intron 40.0%
! ATGGAGCAATGATTTGAAGC+CGG - chr2_4:55966123-55966142 Msa0336530:intron 40.0%
GAGGAGTGAATACTGTGAAT+AGG - chr2_4:55966158-55966177 Msa0336530:intron 40.0%
! TTGTGTTGCCACTTCAGTTT+CGG + chr2_4:55966262-55966281 None:intergenic 40.0%
CTGAAGTGGCAACACAAATT+TGG - chr2_4:55966265-55966284 Msa0336530:CDS 40.0%
TCTGGCAGTAACTCCATTAT+TGG - chr2_4:55966295-55966314 Msa0336530:CDS 40.0%
TTCCTCCACATCATAAAGCT+TGG - chr2_4:55966547-55966566 Msa0336530:CDS 40.0%
! ATGTGCCAAGCTTTATGATG+TGG + chr2_4:55966555-55966574 None:intergenic 40.0%
GGCAAAAGTTTATGGGATTG+AGG + chr2_4:55966721-55966740 None:intergenic 40.0%
GGATTCATGCAAGAGAAGTT+TGG + chr2_4:55966742-55966761 None:intergenic 40.0%
CTGAGAAGGTTATCAATGGA+AGG + chr2_4:55966884-55966903 None:intergenic 40.0%
GATGCTGAGAAGGTTATCAA+TGG + chr2_4:55966888-55966907 None:intergenic 40.0%
GGGTGTAGCAATTATTCATG+TGG + chr2_4:55966949-55966968 None:intergenic 40.0%
ATAATTGCTACACCCTTTCC+CGG - chr2_4:55966954-55966973 Msa0336530:CDS 40.0%
! ATTGGCTTAACTGTTCTTGG+AGG - chr2_4:55966985-55967004 Msa0336530:intron 40.0%
!! GTTCTTGGAGGTACTTGAAT+CGG - chr2_4:55966997-55967016 Msa0336530:intron 40.0%
AATTAGCATCCTTGACTGGT+CGG + chr2_4:55967043-55967062 None:intergenic 40.0%
CCTGGATTTGGATACTGATA+TGG + chr2_4:55967070-55967089 None:intergenic 40.0%
CCATATCAGTATCCAAATCC+AGG - chr2_4:55967067-55967086 Msa0336530:intron 40.0%
ACTATGGAACTCAACCTTGA+AGG + chr2_4:55967120-55967139 None:intergenic 40.0%
TGAGTTCCATAGTGCAATTG+AGG - chr2_4:55967127-55967146 Msa0336530:intron 40.0%
CATCTACCTCAATTGCACTA+TGG + chr2_4:55967136-55967155 None:intergenic 40.0%
GGTGACACTGTGATATGAAT+TGG - chr2_4:55967182-55967201 Msa0336530:intron 40.0%
CACTGTGATATGAATTGGAC+AGG - chr2_4:55967187-55967206 Msa0336530:intron 40.0%
CAACGATGCATGCCATATAT+AGG - chr2_4:55967276-55967295 Msa0336530:intron 40.0%
CTGCTAGGTTTAGAGAAGAA+CGG + chr2_4:55967387-55967406 None:intergenic 40.0%
CTTCTTCATCAACTCAAGAG+GGG - chr2_4:55967433-55967452 Msa0336530:intron 40.0%
GTGATTTCGGACCGAAAATT+GGG + chr2_4:55967468-55967487 None:intergenic 40.0%
GGTAAAAAACCCATCTAGAG+AGG + chr2_4:55967490-55967509 None:intergenic 40.0%
!! TTTTCTTTCCCGTCTTGTTG+AGG - chr2_4:55967591-55967610 Msa0336530:intron 40.0%
GTTGAATCTGCAATGAATCG+GGG + chr2_4:55967645-55967664 None:intergenic 40.0%
GGTTGAATCTGCAATGAATC+GGG + chr2_4:55967646-55967665 None:intergenic 40.0%
CGGCAAAATGCCTACAATTA+TGG + chr2_4:55967751-55967770 None:intergenic 40.0%
GACATATTTCAAGGGCTATG+CGG - chr2_4:55968032-55968051 Msa0336530:intron 40.0%
TGGTTCAAACAGCTTTGCAA+AGG + chr2_4:55968459-55968478 None:intergenic 40.0%
TTCAAAAGAGACGAGGTATG+TGG - chr2_4:55968504-55968523 Msa0336530:intron 40.0%
TCAAAAGAGACGAGGTATGT+GGG - chr2_4:55968505-55968524 Msa0336530:intron 40.0%
TTTACTACCTCTTTGCATGC+AGG - chr2_4:55968786-55968805 Msa0336530:CDS 40.0%
AACCTCTTCTCCTTTACTGA+TGG + chr2_4:55968848-55968867 None:intergenic 40.0%
CTTGTCTCTCTTCAAATGGA+AGG + chr2_4:55969079-55969098 None:intergenic 40.0%
GATGCTTGTCTCTCTTCAAA+TGG + chr2_4:55969083-55969102 None:intergenic 40.0%
! TCTGAAACCATAGTCTGCAA+GGG + chr2_4:55969105-55969124 None:intergenic 40.0%
! ATCTGAAACCATAGTCTGCA+AGG + chr2_4:55969106-55969125 None:intergenic 40.0%
GTGCCATCTTGTAAAACAGT+TGG + chr2_4:55969204-55969223 None:intergenic 40.0%
TGTTTCCCATGCTTGGAAAT+AGG - chr2_4:55969332-55969351 Msa0336530:intron 40.0%
GTTTCCCATGCTTGGAAATA+GGG - chr2_4:55969333-55969352 Msa0336530:intron 40.0%
ACGACAGAACACAAACGTGA+CGG + chr2_4:55961073-55961092 None:intergenic 45.0%
CTCAAGGACCAAATGCTTGT+TGG - chr2_4:55961575-55961594 Msa0336530:intron 45.0%
!! CTGATGAAGAGGAGAGTACT+TGG - chr2_4:55961866-55961885 Msa0336530:intron 45.0%
ACTAAAGTTCCTCTACCCGA+AGG - chr2_4:55961913-55961932 Msa0336530:intron 45.0%
AACGATTCCACAACACCTTC+GGG + chr2_4:55961931-55961950 None:intergenic 45.0%
CAACGATTCCACAACACCTT+CGG + chr2_4:55961932-55961951 None:intergenic 45.0%
TTGTAGCATGTCATGTGCAG+AGG - chr2_4:55962735-55962754 Msa0336530:intron 45.0%
! AGAGTTCTGATCCAAGACGT+AGG - chr2_4:55962797-55962816 Msa0336530:intron 45.0%
! GAGTTCTGATCCAAGACGTA+GGG - chr2_4:55962798-55962817 Msa0336530:intron 45.0%
GAAACTCTACCTTTGCAGCA+AGG + chr2_4:55962985-55963004 None:intergenic 45.0%
! AGTGACCTCAAAGTGTCTGT+AGG - chr2_4:55963918-55963937 Msa0336530:intron 45.0%
! TCAAAGTGTCTGTAGGTGGT+GGG - chr2_4:55963925-55963944 Msa0336530:intron 45.0%
! TTTGGTTGTTGCTTCTCCTG+TGG - chr2_4:55964497-55964516 Msa0336530:intron 45.0%
GAGGCAGATGAGAATAAGTG+TGG + chr2_4:55965411-55965430 None:intergenic 45.0%
TGAGTTCCATAGTGTAAGCG+AGG + chr2_4:55965430-55965449 None:intergenic 45.0%
CATATCAGCATCCACATTCC+GGG + chr2_4:55965489-55965508 None:intergenic 45.0%
GTTAAGCCATTTGTGGCTAC+CGG - chr2_4:55965592-55965611 Msa0336530:intron 45.0%
CATTTGTGGCTACCGGAAAA+GGG - chr2_4:55965599-55965618 Msa0336530:intron 45.0%
GGGTGTAGCAATTATTCCTG+TGG - chr2_4:55965619-55965638 Msa0336530:intron 45.0%
CTTGCATGAATCTGAAGGGT+AGG + chr2_4:55965816-55965835 None:intergenic 45.0%
ATGCAAGAGAAGGTTGGCAA+AGG - chr2_4:55965829-55965848 Msa0336530:CDS 45.0%
! GAGAAGGTTGGCAAAGGTAT+TGG - chr2_4:55965835-55965854 Msa0336530:CDS 45.0%
AGCTTTCCTAGGTGAACTCA+AGG - chr2_4:55965858-55965877 Msa0336530:CDS 45.0%
CATACTCCTTGAGTTCACCT+AGG + chr2_4:55965867-55965886 None:intergenic 45.0%
! TTCGCACTCTAGAAGGAACT+TGG - chr2_4:55965978-55965997 Msa0336530:intron 45.0%
! ATGTTTTGTCTCTGTGGCCA+AGG + chr2_4:55966060-55966079 None:intergenic 45.0%
! TGGCACATGTTTTGTCTCTG+TGG + chr2_4:55966066-55966085 None:intergenic 45.0%
! AACATGTGCCAAGCTTTTCG+AGG - chr2_4:55966075-55966094 Msa0336530:intron 45.0%
TTCCTTCACCTCGAAAAGCT+TGG + chr2_4:55966086-55966105 None:intergenic 45.0%
AATAGGTTGCTTCGAGATCC+AGG - chr2_4:55966175-55966194 Msa0336530:intron 45.0%
ATAGGTTGCTTCGAGATCCA+GGG - chr2_4:55966176-55966195 Msa0336530:intron 45.0%
TGTGGTTACCGAAACGGAAT+TGG + chr2_4:55966378-55966397 None:intergenic 45.0%
AATCGCTGTGGTTACCGAAA+CGG + chr2_4:55966384-55966403 None:intergenic 45.0%
AATCATGGCAGAAATCGCTG+TGG + chr2_4:55966396-55966415 None:intergenic 45.0%
AACACTGAAGGTGGCAATCA+TGG + chr2_4:55966411-55966430 None:intergenic 45.0%
ATTGCCACCTTCAGTGTTAC+TGG - chr2_4:55966413-55966432 Msa0336530:intron 45.0%
TATGATGTGGAGGAAGACGA+CGG + chr2_4:55966542-55966561 None:intergenic 45.0%
! TGCCAAGCTTTATGATGTGG+AGG + chr2_4:55966552-55966571 None:intergenic 45.0%
! TTCGTACTTTAGGAGGAGCT+TGG + chr2_4:55966655-55966674 None:intergenic 45.0%
CTTGCATGAATCCGAAGAGT+AGG - chr2_4:55966749-55966768 Msa0336530:intron 45.0%
CAAGTGCATGACCTACTCTT+CGG + chr2_4:55966763-55966782 None:intergenic 45.0%
AGTGGTGGCTCTTGACAAAA+TGG + chr2_4:55966797-55966816 None:intergenic 45.0%
! TTGTCAAGAGCCACCACTTT+TGG - chr2_4:55966799-55966818 Msa0336530:intron 45.0%
!! TGTCAAGAGCCACCACTTTT+GGG - chr2_4:55966800-55966819 Msa0336530:intron 45.0%
!!! ACCACTTTTGGGATATCACC+CGG - chr2_4:55966811-55966830 Msa0336530:intron 45.0%
TTAAGCCAATTGTGGCAACC+GGG + chr2_4:55966975-55966994 None:intergenic 45.0%
GTTAAGCCAATTGTGGCAAC+CGG + chr2_4:55966976-55966995 None:intergenic 45.0%
CTGCAATTAGCATCCTTGAC+TGG + chr2_4:55967047-55967066 None:intergenic 45.0%
ACGCATCGTGTGCCTATATA+TGG + chr2_4:55967291-55967310 None:intergenic 45.0%
TATAGGCACACGATGCGTTT+AGG - chr2_4:55967293-55967312 Msa0336530:intron 45.0%
!! GTTAGTGTGCTGCTTTCGTT+TGG + chr2_4:55967324-55967343 None:intergenic 45.0%
CAGCACACTAACAAGAGTAG+TGG - chr2_4:55967332-55967351 Msa0336530:intron 45.0%
CACACTAACAAGAGTAGTGG+CGG - chr2_4:55967335-55967354 Msa0336530:intron 45.0%
GGTGATTTCGGACCGAAAAT+TGG + chr2_4:55967469-55967488 None:intergenic 45.0%
TCCGAAATCACCTCTCTAGA+TGG - chr2_4:55967477-55967496 Msa0336530:intron 45.0%
CCCATCTAGAGAGGTGATTT+CGG + chr2_4:55967481-55967500 None:intergenic 45.0%
CCGAAATCACCTCTCTAGAT+GGG - chr2_4:55967478-55967497 Msa0336530:intron 45.0%
GTGATTTCATCATCTTGGCG+TGG - chr2_4:55967562-55967581 Msa0336530:intron 45.0%
! TCTTCGAGTTATAGATCCGG+AGG - chr2_4:55967679-55967698 Msa0336530:intron 45.0%
! GTCTGGAATACTCATTCCTC+CGG + chr2_4:55967698-55967717 None:intergenic 45.0%
TTTATGTTTAAGGAGGGGCG+TGG + chr2_4:55968159-55968178 None:intergenic 45.0%
CAAAAGAGACGAGGTATGTG+GGG - chr2_4:55968506-55968525 Msa0336530:intron 45.0%
TCTCTATCCTGCATGCAAAG+AGG + chr2_4:55968796-55968815 None:intergenic 45.0%
CTTTGCATGCAGGATAGAGA+TGG - chr2_4:55968796-55968815 Msa0336530:CDS 45.0%
GTCCATCAGTAAAGGAGAAG+AGG - chr2_4:55968843-55968862 Msa0336530:CDS 45.0%
GGCTCTTCTTCAATGCACTT+TGG + chr2_4:55969137-55969156 None:intergenic 45.0%
! CTGTTTTACAAGATGGCACG+AGG - chr2_4:55969205-55969224 Msa0336530:intron 45.0%
TTGGAAAGAGGAGGAATGCA+AGG - chr2_4:55969266-55969285 Msa0336530:intron 45.0%
!! ATAATAAAATAAAAAAGAAT+TGG + chr2_4:55961401-55961420 None:intergenic 5.0%
!! AATTTGAATAATAATTTATT+CGG - chr2_4:55964431-55964450 Msa0336530:intron 5.0%
!! TGAAGTTGGTGAGGTGAAGG+AGG + chr2_4:55961194-55961213 None:intergenic 50.0%
TCCTTCACCTCACCAACTTC+AGG - chr2_4:55961193-55961212 Msa0336530:three_prime_UTR 50.0%
!! ACCTGAAGTTGGTGAGGTGA+AGG + chr2_4:55961197-55961216 None:intergenic 50.0%
AAGCTTCTCCACATCCACCA+TGG + chr2_4:55962017-55962036 None:intergenic 50.0%
GTGGAGAAGCTTACTACTGC+AGG - chr2_4:55962025-55962044 Msa0336530:intron 50.0%
TGTCATGTGCAGAGGCTGAT+TGG - chr2_4:55962743-55962762 Msa0336530:intron 50.0%
GTCATGTGCAGAGGCTGATT+GGG - chr2_4:55962744-55962763 Msa0336530:intron 50.0%
TTCTGATCCAAGACGTAGGG+AGG - chr2_4:55962801-55962820 Msa0336530:intron 50.0%
ACTCTACCTTTGCAGCAAGG+AGG + chr2_4:55962982-55963001 None:intergenic 50.0%
! GACCTCAAAGTGTCTGTAGG+TGG - chr2_4:55963921-55963940 Msa0336530:intron 50.0%
CACCACCTACAGACACTTTG+AGG + chr2_4:55963926-55963945 None:intergenic 50.0%
! CTCAAAGTGTCTGTAGGTGG+TGG - chr2_4:55963924-55963943 Msa0336530:intron 50.0%
CATCCTGAATGACGCGTCAT+CGG + chr2_4:55963984-55964003 None:intergenic 50.0%
GTGAGTGTGGTGCTTTCGTT+TGG - chr2_4:55965247-55965266 Msa0336530:intron 50.0%
CATCTGCCTCGCTTACACTA+TGG - chr2_4:55965421-55965440 Msa0336530:intron 50.0%
CATGGTGCGTGAGACCTTTA+AGG + chr2_4:55965454-55965473 None:intergenic 50.0%
AAAGGTCTCACGCACCATGA+AGG - chr2_4:55965455-55965474 Msa0336530:intron 50.0%
! ACCATGAAGGAGGTATGACC+CGG - chr2_4:55965468-55965487 Msa0336530:intron 50.0%
! CCTTTTCCGGTAGCCACAAA+TGG + chr2_4:55965601-55965620 None:intergenic 50.0%
CCATTTGTGGCTACCGGAAA+AGG - chr2_4:55965598-55965617 Msa0336530:intron 50.0%
!!! ACCGCTTTTAGGACATCACC+CGG + chr2_4:55965754-55965773 None:intergenic 50.0%
!! TGTCAAGAGCCACCGCTTTT+AGG + chr2_4:55965765-55965784 None:intergenic 50.0%
AGCGGTGGCTCTTGACAAAA+TGG - chr2_4:55965768-55965787 Msa0336530:CDS 50.0%
!! TGCCAAGCTTTTCGAGGTGA+AGG - chr2_4:55966081-55966100 Msa0336530:intron 50.0%
! ACTCCTCTTTTGCGTGACTC+CGG + chr2_4:55966145-55966164 None:intergenic 50.0%
TAGGTTGCTTCGAGATCCAG+GGG - chr2_4:55966177-55966196 Msa0336530:intron 50.0%
CAACCGGTTACCAACACTGA+AGG - chr2_4:55966208-55966227 Msa0336530:intron 50.0%
!! CCACCTTCAGTGTTGGTAAC+CGG + chr2_4:55966214-55966233 None:intergenic 50.0%
CCAACACTGAAGGTGGCAAT+CGG - chr2_4:55966218-55966237 Msa0336530:intron 50.0%
GGTGGTAACCGAAACTGAAG+TGG - chr2_4:55966251-55966270 Msa0336530:intron 50.0%
CTACTGGCCAGTAACACTGA+AGG + chr2_4:55966423-55966442 None:intergenic 50.0%
TTACTGGCCAGTAGTACCAC+CGG - chr2_4:55966429-55966448 Msa0336530:CDS 50.0%
! TTTGAGATCCAGTAGACCGG+TGG + chr2_4:55966448-55966467 None:intergenic 50.0%
!! GGCTTTGAGATCCAGTAGAC+CGG + chr2_4:55966451-55966470 None:intergenic 50.0%
TTGAAGCCAGAGTCACGCAA+AGG + chr2_4:55966497-55966516 None:intergenic 50.0%
AAGACGACGGCATTCGAGAA+TGG + chr2_4:55966529-55966548 None:intergenic 50.0%
! TGGCACATGATTTGTCCGTG+TGG - chr2_4:55966567-55966586 Msa0336530:CDS 50.0%
! ATGATTTGTCCGTGTGGCCA+AGG - chr2_4:55966573-55966592 Msa0336530:CDS 50.0%
TGCTCCTTATGTGGTGTCCT+TGG + chr2_4:55966593-55966612 None:intergenic 50.0%
! GGCACGTTTTGCTCCTTATG+TGG + chr2_4:55966602-55966621 None:intergenic 50.0%
GGGTGATATCCCAAAAGTGG+TGG + chr2_4:55966812-55966831 None:intergenic 50.0%
CAATTGTGGCAACCGGGAAA+GGG + chr2_4:55966969-55966988 None:intergenic 50.0%
AGTCAAGATCCGACCAGTCA+AGG - chr2_4:55967031-55967050 Msa0336530:intron 50.0%
! AAGGGGTATGACCCTGGATT+TGG + chr2_4:55967082-55967101 None:intergenic 50.0%
AAGGGCAGTGTGGACATGTA+AGG - chr2_4:55967213-55967232 Msa0336530:intron 50.0%
! GCACACGATGCGTTTAGGTT+AGG - chr2_4:55967298-55967317 Msa0336530:intron 50.0%
GTGACGCTCGTCTAAGCATT+GGG + chr2_4:55967361-55967380 None:intergenic 50.0%
TGTGACGCTCGTCTAAGCAT+TGG + chr2_4:55967362-55967381 None:intergenic 50.0%
AACGGACACCTCAACAAGAC+GGG + chr2_4:55967602-55967621 None:intergenic 50.0%
GAACGGACACCTCAACAAGA+CGG + chr2_4:55967603-55967622 None:intergenic 50.0%
! GTCTTGTTGAGGTGTCCGTT+CGG - chr2_4:55967602-55967621 Msa0336530:intron 50.0%
CGGCTTCCGCTAGTGATAAA+AGG - chr2_4:55968052-55968071 Msa0336530:intron 50.0%
CAAGCATCCCTTGCAGACTA+TGG - chr2_4:55969095-55969114 Msa0336530:intron 50.0%
!! TCCTCTACCCGAAGGTGTTG+TGG - chr2_4:55961921-55961940 Msa0336530:intron 55.0%
TCCACAACACCTTCGGGTAG+AGG + chr2_4:55961925-55961944 None:intergenic 55.0%
CCATGGCATGGAACAGCTTG+AGG + chr2_4:55962000-55962019 None:intergenic 55.0%
CCTCAAGCTGTTCCATGCCA+TGG - chr2_4:55961997-55962016 Msa0336530:intron 55.0%
CAAGCTGTTCCATGCCATGG+TGG - chr2_4:55962000-55962019 Msa0336530:intron 55.0%
!! GTTCCATGCCATGGTGGATG+TGG - chr2_4:55962006-55962025 Msa0336530:intron 55.0%
TCTCCACATCCACCATGGCA+TGG + chr2_4:55962012-55962031 None:intergenic 55.0%
CTTCCGATGACGCGTCATTC+AGG - chr2_4:55963978-55963997 Msa0336530:intron 55.0%
! GGTTGTTGCTTCTCCTGTGG+AGG - chr2_4:55964500-55964519 Msa0336530:intron 55.0%
TTGTGCCGCCATCTAAGCAG+TGG - chr2_4:55965209-55965228 Msa0336530:intron 55.0%
TGTGCCGCCATCTAAGCAGT+GGG - chr2_4:55965210-55965229 Msa0336530:intron 55.0%
CACCACACTCACAAGAGCAG+CGG + chr2_4:55965239-55965258 None:intergenic 55.0%
TTGGACAGGAACAAGGGCAG+CGG + chr2_4:55967201-55967220 None:intergenic 55.0%
TCCGGGTCATACCTCCTTCA+TGG + chr2_4:55965472-55965491 None:intergenic 55.0%
! AGGAGGTATGACCCGGAATG+TGG - chr2_4:55965475-55965494 Msa0336530:intron 55.0%
AGGTTCTCAATGGAGGGCCT+TGG - chr2_4:55965689-55965708 Msa0336530:CDS 55.0%
CATTCTCCGAAAGATCGCGC+CGG - chr2_4:55965732-55965751 Msa0336530:CDS 55.0%
ATTCTCCGAAAGATCGCGCC+GGG - chr2_4:55965733-55965752 Msa0336530:CDS 55.0%
GCCGGGTGATGTCCTAAAAG+CGG - chr2_4:55965750-55965769 Msa0336530:CDS 55.0%
GGGTGATGTCCTAAAAGCGG+TGG - chr2_4:55965753-55965772 Msa0336530:CDS 55.0%
AAGCCGGAGTCACGCAAAAG+AGG - chr2_4:55966139-55966158 Msa0336530:intron 55.0%
CCGGTTACCAACACTGAAGG+TGG - chr2_4:55966211-55966230 Msa0336530:intron 55.0%
CCGATTGCCACCTTCAGTGT+TGG + chr2_4:55966221-55966240 None:intergenic 55.0%
ACACTGAAGGTGGCAATCGG+CGG - chr2_4:55966221-55966240 Msa0336530:intron 55.0%
CTGGCCAGTAACACTGAAGG+TGG + chr2_4:55966420-55966439 None:intergenic 55.0%
CAGTAGACCGGTGGTACTAC+TGG + chr2_4:55966439-55966458 None:intergenic 55.0%
CAGTAGTACCACCGGTCTAC+TGG - chr2_4:55966437-55966456 Msa0336530:CDS 55.0%
ACTCCTCCTTTGCGTGACTC+TGG - chr2_4:55966488-55966507 Msa0336530:intron 55.0%
AAGCCAGAGTCACGCAAAGG+AGG + chr2_4:55966494-55966513 None:intergenic 55.0%
ATGTGGTGTCCTTGGCCACA+CGG + chr2_4:55966048-55966067 None:intergenic 55.0%
GTGGCCAAGGACACCACATA+AGG - chr2_4:55966586-55966605 Msa0336530:CDS 55.0%
GCCGGGTGATATCCCAAAAG+TGG + chr2_4:55966815-55966834 None:intergenic 55.0%
!!! TTTTGGGATATCACCCGGCG+CGG - chr2_4:55966816-55966835 Msa0336530:intron 55.0%
CCAATTGTGGCAACCGGGAA+AGG + chr2_4:55966970-55966989 None:intergenic 55.0%
CCTTTCCCGGTTGCCACAAT+TGG - chr2_4:55966967-55966986 Msa0336530:CDS 55.0%
! CGATGAAAGGGGTATGACCC+TGG + chr2_4:55967088-55967107 None:intergenic 55.0%
TACCCCTTTCATCGAGCGTG+AGG - chr2_4:55967094-55967113 Msa0336530:intron 55.0%
AGGCCTCACGCTCGATGAAA+GGG + chr2_4:55967100-55967119 None:intergenic 55.0%
AAGGCCTCACGCTCGATGAA+AGG + chr2_4:55967101-55967120 None:intergenic 55.0%
! TAAGGAGGGGCGTGGAATGT+GGG + chr2_4:55968151-55968170 None:intergenic 55.0%
! TTAAGGAGGGGCGTGGAATG+TGG + chr2_4:55968152-55968171 None:intergenic 55.0%
GCACTGCGGTCCATCAGTAA+AGG - chr2_4:55968835-55968854 Msa0336530:CDS 55.0%
!! AGGAGTGCCTCCCTACGTCT+TGG + chr2_4:55962811-55962830 None:intergenic 60.0%
GCGTCCCACTGCTTAGATGG+CGG + chr2_4:55965217-55965236 None:intergenic 60.0%
AAGGGCAGCGGGGACATGTA+AGG + chr2_4:55965344-55965363 None:intergenic 60.0%
TGGACAGGAACAAGGGCAGC+GGG + chr2_4:55965355-55965374 None:intergenic 60.0%
GGTCTCACGCACCATGAAGG+AGG - chr2_4:55965458-55965477 Msa0336530:intron 60.0%
CATCACCCGGCGCGATCTTT+CGG + chr2_4:55965741-55965760 None:intergenic 60.0%
GTTGCTTCGAGATCCAGGGG+TGG - chr2_4:55966180-55966199 Msa0336530:intron 60.0%
CTTCGAGATCCAGGGGTGGT+GGG - chr2_4:55966184-55966203 Msa0336530:intron 60.0%
CACTGAAGGTGGCAATCGGC+GGG - chr2_4:55966222-55966241 Msa0336530:intron 60.0%
GTGGCAATCGGCGGGAATTG+CGG - chr2_4:55966230-55966249 Msa0336530:intron 60.0%
! TATCACCCGGCGCGGTCTTT+TGG - chr2_4:55966824-55966843 Msa0336530:intron 60.0%
GTTCTCCAAAAGACCGCGCC+GGG + chr2_4:55966832-55966851 None:intergenic 60.0%
CGTTCTCCAAAAGACCGCGC+CGG + chr2_4:55966833-55966852 None:intergenic 60.0%
GGCCTCACGCTCGATGAAAG+GGG + chr2_4:55967099-55967118 None:intergenic 60.0%
CATCGAGCGTGAGGCCTTCA+AGG - chr2_4:55967103-55967122 Msa0336530:intron 60.0%
GGACAGGAACAAGGGCAGTG+TGG - chr2_4:55967203-55967222 Msa0336530:intron 60.0%
AGGGGTAAGTGGCAGCTGCT+AGG + chr2_4:55967402-55967421 None:intergenic 60.0%
GCGGCGTCCCACTGCTTAGA+TGG + chr2_4:55965220-55965239 None:intergenic 65.0%
CGCCGCTGCTCTTGTGAGTG+TGG - chr2_4:55965234-55965253 Msa0336530:intron 65.0%
GGACAGGAACAAGGGCAGCG+GGG + chr2_4:55965354-55965373 None:intergenic 65.0%
GCTTCGAGATCCAGGGGTGG+TGG - chr2_4:55966183-55966202 Msa0336530:intron 65.0%
!! TCCAGGGGTGGTGGGACAAC+CGG - chr2_4:55966192-55966211 Msa0336530:intron 65.0%
GCAATCGGCGGGAATTGCGG+TGG - chr2_4:55966233-55966252 Msa0336530:intron 65.0%
ACCGGTTGTCCCACCACCCC+TGG + chr2_4:55966196-55966215 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55961027 55969541 55961027 ID=Msa0336530;Name=Msa0336530
chr2_4 mRNA 55961027 55969541 55961027 ID=Msa0336530-mRNA-1;Parent=Msa0336530;Name=Msa0336530-mRNA-1;_AED=0.13;_eAED=0.13;_QI=101|0.78|0.8|1|0.85|0.93|15|381|523
chr2_4 exon 55961027 55961518 55961027 ID=Msa0336530-mRNA-1:exon:17050;Parent=Msa0336530-mRNA-1
chr2_4 exon 55961704 55961760 55961704 ID=Msa0336530-mRNA-1:exon:17049;Parent=Msa0336530-mRNA-1
chr2_4 exon 55962050 55962126 55962050 ID=Msa0336530-mRNA-1:exon:17048;Parent=Msa0336530-mRNA-1
chr2_4 exon 55965681 55965924 55965681 ID=Msa0336530-mRNA-1:exon:17047;Parent=Msa0336530-mRNA-1
chr2_4 exon 55966005 55966074 55966005 ID=Msa0336530-mRNA-1:exon:17046;Parent=Msa0336530-mRNA-1
chr2_4 exon 55966265 55966319 55966265 ID=Msa0336530-mRNA-1:exon:17045;Parent=Msa0336530-mRNA-1
chr2_4 exon 55966425 55966464 55966425 ID=Msa0336530-mRNA-1:exon:17044;Parent=Msa0336530-mRNA-1
chr2_4 exon 55966541 55966628 55966541 ID=Msa0336530-mRNA-1:exon:17043;Parent=Msa0336530-mRNA-1
chr2_4 exon 55966841 55966992 55966841 ID=Msa0336530-mRNA-1:exon:17042;Parent=Msa0336530-mRNA-1
chr2_4 exon 55967574 55967605 55967574 ID=Msa0336530-mRNA-1:exon:17041;Parent=Msa0336530-mRNA-1
chr2_4 exon 55967715 55967827 55967715 ID=Msa0336530-mRNA-1:exon:17040;Parent=Msa0336530-mRNA-1
chr2_4 exon 55968582 55968865 55968582 ID=Msa0336530-mRNA-1:exon:17039;Parent=Msa0336530-mRNA-1
chr2_4 exon 55968949 55969034 55968949 ID=Msa0336530-mRNA-1:exon:17038;Parent=Msa0336530-mRNA-1
chr2_4 exon 55969206 55969281 55969206 ID=Msa0336530-mRNA-1:exon:17037;Parent=Msa0336530-mRNA-1
chr2_4 exon 55969354 55969541 55969354 ID=Msa0336530-mRNA-1:exon:17036;Parent=Msa0336530-mRNA-1
chr2_4 five_prime_UTR 55969441 55969541 55969441 ID=Msa0336530-mRNA-1:five_prime_utr;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55969354 55969440 55969354 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55969206 55969281 55969206 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55968949 55969034 55968949 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55968582 55968865 55968582 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55967715 55967827 55967715 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55967574 55967605 55967574 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55966841 55966992 55966841 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55966541 55966628 55966541 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55966425 55966464 55966425 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55966265 55966319 55966265 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55966005 55966074 55966005 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55965681 55965924 55965681 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55962050 55962126 55962050 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55961704 55961760 55961704 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 CDS 55961408 55961518 55961408 ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4 three_prime_UTR 55961027 55961407 55961027 ID=Msa0336530-mRNA-1:three_prime_utr;Parent=Msa0336530-mRNA-1
Gene Sequence

>Msa0336530

ATGGAACCACCAATTTGCCCTATTATCTCTCCTTGTGCCAATGAAATCTCTTCTCTTCTTTCTCCTCCTTCACCTCACCAACTTCAGGAATATTATCAAAACATTTTCTCTTCAAGGCACTGCAATGACATCACTGTCAAACATGATGACCAACTTGGAAAAGGTGTGTATGCTGTAAAGGACTTCAAAGAGGATCAACTTGTTCTCAAGGACCAAATGCTTGTTGGGAATCAACACTCTTTCAACAAGATTGATTGTTTTGTCTGTAGCTTCTGCTTTCGTTTTATTGGTTCCATAGAAATTCAAATTGGTAGGAGGCTTTACTTGGAAGAATTAAGGGCCAATGAGAGTCATGATTGTGATGTAGGAAGCTCTTCAAAGTCTTCGAAAAACTGTCATGAAATGGATTCATCTGATGAAGAGGAGAGTACTTGGCAATGTAGTTCTGGAAGTTCCAAAACTAAAGTTCCTCTACCCGAAGGTGTTGTGGAATCGTTGATGAATGGCCAATTCAGATTGCCTTACTCTGAGAACATGTCATGTGCAGAGGCTGATTGGGAGTCCTCCCATTCTTTACTCTGTACTGGTGAGAGTTCTGATCCAAGACGTAGGGAGGCACTCCTTAAATTCGTGAAACATGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAGGTCATTTCTTCTACCATATTAAGGTACCACAAGTTAAAAGCAAATTGTCCTGCAGAGAAAGAGAAATATGATGCATCCTGTGTTTCAGACCACTATAATATATCTCTTCTTTTGGAAGCTTGGAGACCTATATCAATGGGATACAAAAAAAGGTGGTGGGACTGCGTTGCACTACCAGATGATATTGATTCTTCCGATGACGCGTCATTCAGGATGCAAATTAAAGAGTTGGCATTTGAGTCTCTCCAACTTCTTAAGACAGCAATATTTGACAAGGAATTATTCTCCCTTGAAATTTATGGACATATCATTGGCATGTTTGAGCTGAATAATCTTGATTTGGTTGTTGCTTCTCCTGTGGAGGATTACTTTTTATACATCAATGATATGTCGAATCCAGATAAGAAAGAAGCTGAGAAAATTACACAACCAATTCTAGATGCTCTAGGTGAAGACTATTCTACTTGTTGCGAAGGTACCGATATCACTGCTGTTTGTCTGTTGATGTCTGCAGACAAGTTATTTTTGTCTATTCATAGTTCAACTTTTTGTTCTTTATCTCAATTTTCCTCAGTATTATTGATCTGCCTTATCATTACTGAAGTTCATGCTTTGCCTTTATTGTCTGAAGCAAGACAACAGTCTTCAAGAACTGCATTTTTTCCTTTGCAAAGCTGTTTGAACCATTCATGTTGTCCTAATGCTAAAGCTTTCAAAAGAGACGAGGATAGAGATGGCCAAGCAATAATTATTGCACTGCGGTCCATCAGTAAAGGAGAAGAGATAACCATTTCATATGTTGATGAGGACCTTCCATTTGAAGAGAGACAAGCATCCCTTGCAGACTATGGTTTCAGATGTAGATGTCCAAAGTGCATTGAAGAAGAGCCATAA

Protein sequence

>Msa0336530

MEPPICPIISPCANEISSLLSPPSPHQLQEYYQNIFSSRHCNDITVKHDDQLGKGVYAVKDFKEDQLVLKDQMLVGNQHSFNKIDCFVCSFCFRFIGSIEIQIGRRLYLEELRANESHDCDVGSSSKSSKNCHEMDSSDEEESTWQCSSGSSKTKVPLPEGVVESLMNGQFRLPYSENMSCAEADWESSHSLLCTGESSDPRRREALLKFVKHANETNDIFLLAAKVISSTILRYHKLKANCPAEKEKYDASCVSDHYNISLLLEAWRPISMGYKKRWWDCVALPDDIDSSDDASFRMQIKELAFESLQLLKTAIFDKELFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYINDMSNPDKKEAEKITQPILDALGEDYSTCCEGTDITAVCLLMSADKLFLSIHSSTFCSLSQFSSVLLICLIITEVHALPLLSEARQQSSRTAFFPLQSCLNHSCCPNAKAFKRDEDRDGQAIIIALRSISKGEEITISYVDEDLPFEERQASLADYGFRCRCPKCIEEEP*