AlfalfaGEDB | Msa0336530

M. sativa cultivar zhongmu-4 / Msa0336530

KEGG: -
GO: -
PFAM: PF00856.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336530	XP_003597027.2	79.853	546	29	4	1	523	1	488	0.0	853

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336530	sp\|Q5PP37\|ATXR2_ARATH	57.179	397	131	7	13	386	12	392	9.30e-147	432
Msa0336530	sp\|Q5PP37\|ATXR2_ARATH	79.487	78	16	0	444	521	392	469	1.10e-35	142

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0336530	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0190860	Msa0336530	0.909532	5.135247e-82	-8.615850e-47
Msa0336440	Msa0336530	0.974389	4.537268e-138	-8.615850e-47
Msa0336530	Msa0622780	0.893222	7.686595e-75	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336530	MtrunA17_Chr2g0322871	79.853	546	29	4	1	523	1	488	0.0	853

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336530	AT3G21820.1	57.179	397	131	7	13	386	12	392	9.45e-148	432
Msa0336530	AT3G21820.1	79.487	78	16	0	444	521	392	469	1.12e-36	142

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Find 121 sgRNAs with CRISPR-Local

Find 578 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAGATATATTATAG+TGG	0.568749	2_4:+55966881	None:intergenic
AAAGAGAACTTCTCAGAGTA+AGG	0.467617	2_4:+55968573	None:intergenic
AAATTCCCTATTTCCAAGCA+TGG	0.498035	2_4:+55961208	None:intergenic
AAATTCGTGAAACATGCTAA+TGG	0.479165	2_4:-55967714	Msa0336530:intron
AACAAAATTCTAACCTTATC+TGG	0.186766	2_4:+55965991	None:intergenic
AACCATTTCATATGTTGATG+AGG	0.563985	2_4:-55961494	Msa0336530:CDS
AACCTCTTCTCCTTTACTGA+TGG	0.484340	2_4:+55961701	None:intergenic
AACGATTCCACAACACCTTC+GGG	0.468148	2_4:+55968618	None:intergenic
AAGAAGAGAAGAGATTTCAT+TGG	0.427487	2_4:+55969381	None:intergenic
AAGCAATAATTATTGCACTG+CGG	0.787000	2_4:-55961725	Msa0336530:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAACAAAAGTTGCAACTT+TGG	+	chr2_4:55961108-55961127	None:intergenic	30.0%
AAGAAGAGAAGAGATTTCAT+TGG	+	chr2_4:55961168-55961187	None:intergenic	30.0%
TTGATTACATTACCTGAAGT+TGG	+	chr2_4:55961208-55961227	None:intergenic	30.0%
GACATAGAAGAGTAAATGTT+AGG	-	chr2_4:55961468-55961487	Msa0336530:CDS	30.0%
GGTTCCATAGAAATTCAAAT+TGG	-	chr2_4:55961742-55961761	Msa0336530:intron	30.0%
CCTACCAATTTGAATTTCTA+TGG	+	chr2_4:55961749-55961768	None:intergenic	30.0%
CCATAGAAATTCAAATTGGT+AGG	-	chr2_4:55961746-55961765	Msa0336530:intron	30.0%
TAGAAATTCAAATTGGTAGG+AGG	-	chr2_4:55961749-55961768	Msa0336530:intron	30.0%
GCTTTACTTGGAAGAATTAA+GGG	-	chr2_4:55961771-55961790	Msa0336530:intron	30.0%
TTCGAAAAACTGTCATGAAA+TGG	-	chr2_4:55961837-55961856	Msa0336530:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	55961027	55969541	55961027	ID=Msa0336530;Name=Msa0336530
chr2_4	mRNA	55961027	55969541	55961027	ID=Msa0336530-mRNA-1;Parent=Msa0336530;Name=Msa0336530-mRNA-1;_AED=0.13;_eAED=0.13;_QI=101\|0.78\|0.8\|1\|0.85\|0.93\|15\|381\|523
chr2_4	exon	55961027	55961518	55961027	ID=Msa0336530-mRNA-1:exon:17050;Parent=Msa0336530-mRNA-1
chr2_4	exon	55961704	55961760	55961704	ID=Msa0336530-mRNA-1:exon:17049;Parent=Msa0336530-mRNA-1
chr2_4	exon	55962050	55962126	55962050	ID=Msa0336530-mRNA-1:exon:17048;Parent=Msa0336530-mRNA-1
chr2_4	exon	55965681	55965924	55965681	ID=Msa0336530-mRNA-1:exon:17047;Parent=Msa0336530-mRNA-1
chr2_4	exon	55966005	55966074	55966005	ID=Msa0336530-mRNA-1:exon:17046;Parent=Msa0336530-mRNA-1
chr2_4	exon	55966265	55966319	55966265	ID=Msa0336530-mRNA-1:exon:17045;Parent=Msa0336530-mRNA-1
chr2_4	exon	55966425	55966464	55966425	ID=Msa0336530-mRNA-1:exon:17044;Parent=Msa0336530-mRNA-1
chr2_4	exon	55966541	55966628	55966541	ID=Msa0336530-mRNA-1:exon:17043;Parent=Msa0336530-mRNA-1
chr2_4	exon	55966841	55966992	55966841	ID=Msa0336530-mRNA-1:exon:17042;Parent=Msa0336530-mRNA-1
chr2_4	exon	55967574	55967605	55967574	ID=Msa0336530-mRNA-1:exon:17041;Parent=Msa0336530-mRNA-1
chr2_4	exon	55967715	55967827	55967715	ID=Msa0336530-mRNA-1:exon:17040;Parent=Msa0336530-mRNA-1
chr2_4	exon	55968582	55968865	55968582	ID=Msa0336530-mRNA-1:exon:17039;Parent=Msa0336530-mRNA-1
chr2_4	exon	55968949	55969034	55968949	ID=Msa0336530-mRNA-1:exon:17038;Parent=Msa0336530-mRNA-1
chr2_4	exon	55969206	55969281	55969206	ID=Msa0336530-mRNA-1:exon:17037;Parent=Msa0336530-mRNA-1
chr2_4	exon	55969354	55969541	55969354	ID=Msa0336530-mRNA-1:exon:17036;Parent=Msa0336530-mRNA-1
chr2_4	five_prime_UTR	55969441	55969541	55969441	ID=Msa0336530-mRNA-1:five_prime_utr;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55969354	55969440	55969354	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55969206	55969281	55969206	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55968949	55969034	55968949	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55968582	55968865	55968582	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55967715	55967827	55967715	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55967574	55967605	55967574	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55966841	55966992	55966841	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55966541	55966628	55966541	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55966425	55966464	55966425	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55966265	55966319	55966265	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55966005	55966074	55966005	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55965681	55965924	55965681	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55962050	55962126	55962050	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55961704	55961760	55961704	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	CDS	55961408	55961518	55961408	ID=Msa0336530-mRNA-1:cds;Parent=Msa0336530-mRNA-1
chr2_4	three_prime_UTR	55961027	55961407	55961027	ID=Msa0336530-mRNA-1:three_prime_utr;Parent=Msa0336530-mRNA-1

Gene Sequence

>Msa0336530

ATGGAACCACCAATTTGCCCTATTATCTCTCCTTGTGCCAATGAAATCTCTTCTCTTCTTTCTCCTCCTTCACCTCACCAACTTCAGGAATATTATCAAAACATTTTCTCTTCAAGGCACTGCAATGACATCACTGTCAAACATGATGACCAACTTGGAAAAGGTGTGTATGCTGTAAAGGACTTCAAAGAGGATCAACTTGTTCTCAAGGACCAAATGCTTGTTGGGAATCAACACTCTTTCAACAAGATTGATTGTTTTGTCTGTAGCTTCTGCTTTCGTTTTATTGGTTCCATAGAAATTCAAATTGGTAGGAGGCTTTACTTGGAAGAATTAAGGGCCAATGAGAGTCATGATTGTGATGTAGGAAGCTCTTCAAAGTCTTCGAAAAACTGTCATGAAATGGATTCATCTGATGAAGAGGAGAGTACTTGGCAATGTAGTTCTGGAAGTTCCAAAACTAAAGTTCCTCTACCCGAAGGTGTTGTGGAATCGTTGATGAATGGCCAATTCAGATTGCCTTACTCTGAGAACATGTCATGTGCAGAGGCTGATTGGGAGTCCTCCCATTCTTTACTCTGTACTGGTGAGAGTTCTGATCCAAGACGTAGGGAGGCACTCCTTAAATTCGTGAAACATGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAGGTCATTTCTTCTACCATATTAAGGTACCACAAGTTAAAAGCAAATTGTCCTGCAGAGAAAGAGAAATATGATGCATCCTGTGTTTCAGACCACTATAATATATCTCTTCTTTTGGAAGCTTGGAGACCTATATCAATGGGATACAAAAAAAGGTGGTGGGACTGCGTTGCACTACCAGATGATATTGATTCTTCCGATGACGCGTCATTCAGGATGCAAATTAAAGAGTTGGCATTTGAGTCTCTCCAACTTCTTAAGACAGCAATATTTGACAAGGAATTATTCTCCCTTGAAATTTATGGACATATCATTGGCATGTTTGAGCTGAATAATCTTGATTTGGTTGTTGCTTCTCCTGTGGAGGATTACTTTTTATACATCAATGATATGTCGAATCCAGATAAGAAAGAAGCTGAGAAAATTACACAACCAATTCTAGATGCTCTAGGTGAAGACTATTCTACTTGTTGCGAAGGTACCGATATCACTGCTGTTTGTCTGTTGATGTCTGCAGACAAGTTATTTTTGTCTATTCATAGTTCAACTTTTTGTTCTTTATCTCAATTTTCCTCAGTATTATTGATCTGCCTTATCATTACTGAAGTTCATGCTTTGCCTTTATTGTCTGAAGCAAGACAACAGTCTTCAAGAACTGCATTTTTTCCTTTGCAAAGCTGTTTGAACCATTCATGTTGTCCTAATGCTAAAGCTTTCAAAAGAGACGAGGATAGAGATGGCCAAGCAATAATTATTGCACTGCGGTCCATCAGTAAAGGAGAAGAGATAACCATTTCATATGTTGATGAGGACCTTCCATTTGAAGAGAGACAAGCATCCCTTGCAGACTATGGTTTCAGATGTAGATGTCCAAAGTGCATTGAAGAAGAGCCATAA

Protein sequence

>Msa0336530

MEPPICPIISPCANEISSLLSPPSPHQLQEYYQNIFSSRHCNDITVKHDDQLGKGVYAVKDFKEDQLVLKDQMLVGNQHSFNKIDCFVCSFCFRFIGSIEIQIGRRLYLEELRANESHDCDVGSSSKSSKNCHEMDSSDEEESTWQCSSGSSKTKVPLPEGVVESLMNGQFRLPYSENMSCAEADWESSHSLLCTGESSDPRRREALLKFVKHANETNDIFLLAAKVISSTILRYHKLKANCPAEKEKYDASCVSDHYNISLLLEAWRPISMGYKKRWWDCVALPDDIDSSDDASFRMQIKELAFESLQLLKTAIFDKELFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYINDMSNPDKKEAEKITQPILDALGEDYSTCCEGTDITAVCLLMSADKLFLSIHSSTFCSLSQFSSVLLICLIITEVHALPLLSEARQQSSRTAFFPLQSCLNHSCCPNAKAFKRDEDRDGQAIIIALRSISKGEEITISYVDEDLPFEERQASLADYGFRCRCPKCIEEEP*