Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622780 | XP_003597027.2 | 88.998 | 409 | 22 | 2 | 1 | 386 | 1 | 409 | 0.0 | 739 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622780 | sp|Q5PP37|ATXR2_ARATH | 57.179 | 397 | 131 | 7 | 13 | 386 | 12 | 392 | 7.22e-147 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0190860 | Msa0622780 | 0.840619 | 7.794886e-58 | -8.615850e-47 |
| Msa0336440 | Msa0622780 | 0.874181 | 8.256717e-68 | -8.615850e-47 |
| Msa0336530 | Msa0622780 | 0.893222 | 7.686595e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622780 | MtrunA17_Chr2g0322871 | 88.998 | 409 | 22 | 2 | 1 | 386 | 1 | 409 | 0.0 | 739 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622780 | AT3G21820.1 | 57.179 | 397 | 131 | 7 | 13 | 386 | 12 | 392 | 7.34e-148 | 432 |
Find 124 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTCTCCCTTGAAATTTA+TGG | 0.067754 | 4_2:-75527609 | Msa0622780:CDS |
| TAGCATGTTTCACGAATTTA+AGG | 0.173479 | 4_2:+75529029 | None:intergenic |
| AACAAAATTCTAACCTTATC+TGG | 0.186766 | 4_2:+75527302 | None:intergenic |
| CCTACCAATTTGAATTTCTA+TGG | 0.203278 | 4_2:+75530111 | None:intergenic |
| CATGGTGCGTGAGACCTTTA+AGG | 0.219492 | 4_2:+75526407 | None:intergenic |
| GGCTTTACTTGGAAGAATTA+AGG | 0.220553 | 4_2:-75530087 | Msa0622780:CDS |
| TAACTTGTGGTACCTTAATA+TGG | 0.256381 | 4_2:+75528268 | None:intergenic |
| TCATTTCTTCTACCATATTA+AGG | 0.274998 | 4_2:-75528280 | Msa0622780:CDS |
| CTATAATATATCTCTTCTTT+TGG | 0.279823 | 4_2:-75528189 | Msa0622780:CDS |
| TTGATCATTGCTTGATTGAT+TGG | 0.291061 | 4_2:-75526333 | Msa0622780:CDS |
| TTGGCACAAGGAGAGATAAT+AGG | 0.307934 | 4_2:+75530711 | None:intergenic |
| ACTATGGAACTCAACCTTAA+AGG | 0.309531 | 4_2:-75526421 | Msa0622780:CDS |
| CTTCCGATGACGCGTCATTC+AGG | 0.330835 | 4_2:-75527879 | Msa0622780:CDS |
| TCATATCAGCATCCACATTC+CGG | 0.336669 | 4_2:+75526371 | None:intergenic |
| CCATTTGTGGCTACCGGAAA+AGG | 0.339396 | 4_2:-75526260 | Msa0622780:CDS |
| GTTCTTGAAGGTACTTGAAT+TGG | 0.339757 | 4_2:+75526290 | None:intergenic |
| TCTTCAGTGATTGGATCTTT+CGG | 0.357620 | 4_2:+75526120 | None:intergenic |
| TGAAACAAAAGTTGCAACTT+TGG | 0.365660 | 4_2:+75530752 | None:intergenic |
| GAAATTTATGGACATATCAT+TGG | 0.368581 | 4_2:-75527597 | Msa0622780:CDS |
| GGGTAGAGGAACTTTAGTTT+TGG | 0.369192 | 4_2:+75529949 | None:intergenic |
| ATTCACTCCTCTTCAGTGAT+TGG | 0.371353 | 4_2:+75526111 | None:intergenic |
| GGTTCCATAGAAATTCAAAT+TGG | 0.384219 | 4_2:-75530115 | Msa0622780:CDS |
| AGTACTTGGCAATGTAGTTC+TGG | 0.386553 | 4_2:-75529977 | Msa0622780:CDS |
| GTACAATCTTATGATAGAAT+TGG | 0.388696 | 4_2:+75526197 | None:intergenic |
| TCACCTAGAGCATCTAGAAT+TGG | 0.391161 | 4_2:+75527189 | None:intergenic |
| TACAACGTTGTTGATGCTAT+TGG | 0.392607 | 4_2:-75530812 | Msa0622780:five_prime_UTR |
| GCTTTACTTGGAAGAATTAA+GGG | 0.393075 | 4_2:-75530086 | Msa0622780:CDS |
| CTTGAATTGGATCTGTTTGT+TGG | 0.396863 | 4_2:+75526303 | None:intergenic |
| TCCCATTCTTTACTCTGTAC+TGG | 0.399911 | 4_2:-75529085 | Msa0622780:CDS |
| ATCATAAGATTGTACTAGTA+AGG | 0.400564 | 4_2:-75526189 | Msa0622780:CDS |
| CAGAGTAAGGCAATCTGAAT+TGG | 0.403334 | 4_2:+75529897 | None:intergenic |
| CTCAAGGACCAAATGCTTGT+TGG | 0.404124 | 4_2:-75530282 | Msa0622780:CDS |
| AATTGGTAGGAGGCTTTACT+TGG | 0.404200 | 4_2:-75530098 | Msa0622780:CDS |
| GTTGATTCCCAACAAGCATT+TGG | 0.405040 | 4_2:+75530274 | None:intergenic |
| GGAGAGATAATAGGGCAAAT+TGG | 0.407421 | 4_2:+75530720 | None:intergenic |
| CATCTGCCTCGCTTACACTA+TGG | 0.410903 | 4_2:-75526437 | Msa0622780:CDS |
| GATGAGAATAAGTGTGGAAA+TGG | 0.412291 | 4_2:+75526456 | None:intergenic |
| CAACGATTCCACAACACCTT+CGG | 0.414366 | 4_2:+75529928 | None:intergenic |
| TCAAGGACCAAATGCTTGTT+GGG | 0.415492 | 4_2:-75530281 | Msa0622780:CDS |
| ATTATAGTGGTCTGAAACAC+AGG | 0.419773 | 4_2:+75528205 | None:intergenic |
| CATATCAGCATCCACATTCC+GGG | 0.423320 | 4_2:+75526372 | None:intergenic |
| TCCTTCACCTCACCAACTTC+AGG | 0.424197 | 4_2:-75530664 | Msa0622780:intron |
| TCATATTTCTCTTTCTCTGC+AGG | 0.424740 | 4_2:+75528233 | None:intergenic |
| AAGAAGAGAAGAGATTTCAT+TGG | 0.427487 | 4_2:+75530692 | None:intergenic |
| AATTAAAGAGTTGGCATTTG+AGG | 0.440320 | 4_2:-75527851 | Msa0622780:intron |
| CAGACAAACAGCAGTGATAT+CGG | 0.442581 | 4_2:+75527140 | None:intergenic |
| TTTAGGTGTGTATGCTGTAA+AGG | 0.445469 | 4_2:-75530328 | Msa0622780:intron |
| TGGCACAAGGAGAGATAATA+GGG | 0.449200 | 4_2:+75530712 | None:intergenic |
| TCCGGGTCATACCTCCTTCA+TGG | 0.450356 | 4_2:+75526389 | None:intergenic |
| TGTCATGTGCAGAGGCTGAT+TGG | 0.451283 | 4_2:-75529114 | Msa0622780:CDS |
| GTCATGTGCAGAGGCTGATT+GGG | 0.454884 | 4_2:-75529113 | Msa0622780:CDS |
| CTGATGAAGAGGAGAGTACT+TGG | 0.457495 | 4_2:-75529991 | Msa0622780:CDS |
| TTGATTACATTACCTGAAGT+TGG | 0.460100 | 4_2:+75530652 | None:intergenic |
| ATATTGCTGTCTTAAGAAGT+TGG | 0.461995 | 4_2:+75527748 | None:intergenic |
| AAAGAGAACTTCTCAGAGTA+AGG | 0.467617 | 4_2:+75529884 | None:intergenic |
| AACGATTCCACAACACCTTC+GGG | 0.468148 | 4_2:+75529929 | None:intergenic |
| CAGGATGCAAATTAAAGAGT+TGG | 0.472781 | 4_2:-75527860 | Msa0622780:CDS |
| AGGTTCTCAATGGAGGGCCT+TGG | 0.478109 | 4_2:-75526169 | Msa0622780:CDS |
| AAATTCGTGAAACATGCTAA+TGG | 0.479165 | 4_2:-75529025 | Msa0622780:intron |
| GCAATTATTCCCGTGGATCA+AGG | 0.482005 | 4_2:-75526232 | Msa0622780:CDS |
| AGGAGTGCCTCCCTACGTCT+TGG | 0.485168 | 4_2:+75529049 | None:intergenic |
| TGATATGTCCATAAATTTCA+AGG | 0.485450 | 4_2:+75527601 | None:intergenic |
| CATGATGACCAACTTGGAAA+AGG | 0.493356 | 4_2:-75530516 | Msa0622780:intron |
| AATGGCTTAACCGTTCTTGA+AGG | 0.493560 | 4_2:+75526278 | None:intergenic |
| GTCAAACATGATGACCAACT+TGG | 0.495473 | 4_2:-75530522 | Msa0622780:CDS |
| AAGAACGGTTAAGCCATTTG+TGG | 0.495863 | 4_2:-75526273 | Msa0622780:CDS |
| ATCACAATCATGACTCTCAT+TGG | 0.496347 | 4_2:+75530063 | None:intergenic |
| CATCCTGAATGACGCGTCAT+CGG | 0.499769 | 4_2:+75527876 | None:intergenic |
| AGCTTGGAGACCTATATCAA+TGG | 0.502175 | 4_2:-75528165 | Msa0622780:CDS |
| GCTTGGAGACCTATATCAAT+GGG | 0.505745 | 4_2:-75528164 | Msa0622780:CDS |
| TCGGAAGAATCAATATCATC+TGG | 0.512871 | 4_2:+75527895 | None:intergenic |
| ACCTGAAGTTGGTGAGGTGA+AGG | 0.512974 | 4_2:+75530663 | None:intergenic |
| GAGAGTCATGATTGTGATGT+AGG | 0.518145 | 4_2:-75530058 | Msa0622780:CDS |
| ACCAGTACAGAGTAAAGAAT+GGG | 0.520722 | 4_2:+75529084 | None:intergenic |
| AATCAATCAAGCAATGATCA+AGG | 0.522435 | 4_2:+75526335 | None:intergenic |
| CACCAGTACAGAGTAAAGAA+TGG | 0.523065 | 4_2:+75529083 | None:intergenic |
| CATTTGTGGCTACCGGAAAA+GGG | 0.523843 | 4_2:-75526259 | Msa0622780:CDS |
| GTTAAGCCATTTGTGGCTAC+CGG | 0.524333 | 4_2:-75526266 | Msa0622780:CDS |
| TCCTCTACCCGAAGGTGTTG+TGG | 0.524481 | 4_2:-75529936 | Msa0622780:CDS |
| GGTTGTTGCTTCTCCTGTGG+AGG | 0.529227 | 4_2:-75527357 | Msa0622780:CDS |
| TAGAAATTCAAATTGGTAGG+AGG | 0.529619 | 4_2:-75530108 | Msa0622780:CDS |
| TCCACAACACCTTCGGGTAG+AGG | 0.530636 | 4_2:+75529935 | None:intergenic |
| TTTGGTTGTTGCTTCTCCTG+TGG | 0.539607 | 4_2:-75527360 | Msa0622780:CDS |
| CAACCAATTCTAGATGCTCT+AGG | 0.542256 | 4_2:-75527192 | Msa0622780:CDS |
| TGTACTAGTAAGGTTCTCAA+TGG | 0.544249 | 4_2:-75526179 | Msa0622780:CDS |
| AAGTACTTTCCTTGATCCAC+GGG | 0.554874 | 4_2:+75526223 | None:intergenic |
| GACTATTCTACTTGTTGCGA+AGG | 0.556978 | 4_2:-75527165 | Msa0622780:CDS |
| CAAGTACTTTCCTTGATCCA+CGG | 0.560661 | 4_2:+75526222 | None:intergenic |
| AGAGGATCAACTTGTTCTCA+AGG | 0.562698 | 4_2:-75530298 | Msa0622780:CDS |
| AAAGAAGAGATATATTATAG+TGG | 0.568749 | 4_2:+75528192 | None:intergenic |
| TGATATGTCGAATCCAGATA+AGG | 0.572546 | 4_2:-75527315 | Msa0622780:intron |
| TATATTCCTCCTTGCTGCAA+AGG | 0.577155 | 4_2:-75528884 | Msa0622780:intron |
| AAGTGTGGAAATGGTAGAGA+TGG | 0.578661 | 4_2:+75526465 | None:intergenic |
| AATGGATTCATCTGATGAAG+AGG | 0.579769 | 4_2:-75530002 | Msa0622780:CDS |
| CCATAGAAATTCAAATTGGT+AGG | 0.580291 | 4_2:-75530111 | Msa0622780:CDS |
| AATTCAAGTACCTTCAAGAA+CGG | 0.589082 | 4_2:-75526288 | Msa0622780:CDS |
| GATATGTCCATAAATTTCAA+GGG | 0.590090 | 4_2:+75527602 | None:intergenic |
| CTAGTAAGGTTCTCAATGGA+GGG | 0.594170 | 4_2:-75526175 | Msa0622780:CDS |
| ACTAGTAAGGTTCTCAATGG+AGG | 0.594689 | 4_2:-75526176 | Msa0622780:CDS |
| ACCATGAAGGAGGTATGACC+CGG | 0.600604 | 4_2:-75526390 | Msa0622780:CDS |
| AAAGGTCTCACGCACCATGA+AGG | 0.602889 | 4_2:-75526403 | Msa0622780:CDS |
| TGAAGTTGGTGAGGTGAAGG+AGG | 0.605547 | 4_2:+75530666 | None:intergenic |
| GTTGTGGAATCGTTGATGAA+TGG | 0.612754 | 4_2:-75529920 | Msa0622780:CDS |
| GAGTTCTGATCCAAGACGTA+GGG | 0.614600 | 4_2:-75529059 | Msa0622780:CDS |
| GAAACTCTACCTTTGCAGCA+AGG | 0.615703 | 4_2:+75528875 | None:intergenic |
| AGGAGGTATGACCCGGAATG+TGG | 0.620992 | 4_2:-75526383 | Msa0622780:CDS |
| TTCTGATCCAAGACGTAGGG+AGG | 0.621700 | 4_2:-75529056 | Msa0622780:CDS |
| TCAAAGTGTCTGTAGGTGGT+GGG | 0.622876 | 4_2:-75527932 | Msa0622780:intron |
| GAATCAACACTCTTTCAACA+AGG | 0.626409 | 4_2:-75530259 | Msa0622780:intron |
| TGAGTTCCATAGTGTAAGCG+AGG | 0.630590 | 4_2:+75526431 | None:intergenic |
| GAGATAATAGGGCAAATTGG+TGG | 0.635124 | 4_2:+75530723 | None:intergenic |
| TGCTGTAAAGGACTTCAAAG+AGG | 0.636104 | 4_2:-75530316 | Msa0622780:CDS |
| TAAGACAGCAATATTTGACA+AGG | 0.637239 | 4_2:-75527739 | Msa0622780:CDS |
| GAAGAGATTTCATTGGCACA+AGG | 0.637905 | 4_2:+75530699 | None:intergenic |
| TACATTACCTGAAGTTGGTG+AGG | 0.645717 | 4_2:+75530657 | None:intergenic |
| GGGTGTAGCAATTATTCCCG+TGG | 0.645769 | 4_2:-75526239 | Msa0622780:CDS |
| GGTCTCACGCACCATGAAGG+AGG | 0.660184 | 4_2:-75526400 | Msa0622780:CDS |
| AGAGTTCTGATCCAAGACGT+AGG | 0.667681 | 4_2:-75529060 | Msa0622780:CDS |
| ACTAAAGTTCCTCTACCCGA+AGG | 0.681829 | 4_2:-75529944 | Msa0622780:CDS |
| AGTACAGAGTAAAGAATGGG+AGG | 0.682996 | 4_2:+75529087 | None:intergenic |
| ACGACAGAACACAAACGTGA+CGG | 0.687749 | 4_2:+75530787 | None:intergenic |
| TTGTAGCATGTCATGTGCAG+AGG | 0.693250 | 4_2:-75529122 | Msa0622780:intron |
| GAGGCAGATGAGAATAAGTG+TGG | 0.698629 | 4_2:+75526450 | None:intergenic |
| ACTCTACCTTTGCAGCAAGG+AGG | 0.701447 | 4_2:+75528878 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAAACTGTTTTTATAT+AGG | + | chr4_2:75527302-75527321 | None:intergenic | 10.0% |
| !! | ATGTTTATAAAGTAAATAAA+TGG | - | chr4_2:75527670-75527689 | Msa0622780:intron | 10.0% |
| !! | TGTTTATAAAGTAAATAAAT+GGG | - | chr4_2:75527671-75527690 | Msa0622780:intron | 10.0% |
| !! | TATCTATATGTTAAATTAAA+GGG | + | chr4_2:75528529-75528548 | None:intergenic | 10.0% |
| !! | AATGAATAGAAAATGAAAAT+GGG | + | chr4_2:75526343-75526362 | None:intergenic | 15.0% |
| !! | AAATGAATAGAAAATGAAAA+TGG | + | chr4_2:75526344-75526363 | None:intergenic | 15.0% |
| !!! | TAAATATTTAAAATCAATCG+TGG | + | chr4_2:75528478-75528497 | None:intergenic | 15.0% |
| !!! | TATTAATTTTTCATTGTCTA+AGG | - | chr4_2:75528501-75528520 | Msa0622780:intron | 15.0% |
| !! | ATCTATATGTTAAATTAAAG+GGG | + | chr4_2:75528528-75528547 | None:intergenic | 15.0% |
| !! | CTATCTATATGTTAAATTAA+AGG | + | chr4_2:75528530-75528549 | None:intergenic | 15.0% |
| !!! | CTTTAATTTAACATATAGAT+AGG | - | chr4_2:75528528-75528547 | Msa0622780:intron | 15.0% |
| !! | TTAGATGCAATATATTAAAT+CGG | + | chr4_2:75529152-75529171 | None:intergenic | 15.0% |
| !! | ATATTTAACTGTTATGTTAA+AGG | + | chr4_2:75529474-75529493 | None:intergenic | 15.0% |
| !!! | CGAAACAAAAACTTTTAAAA+CGG | + | chr4_2:75526751-75526770 | None:intergenic | 20.0% |
| !! | TCAAATAAATCAATCTAAAC+CGG | + | chr4_2:75527153-75527172 | None:intergenic | 20.0% |
| !! | ATAAGCTAAAAACAACTTAT+AGG | + | chr4_2:75527237-75527256 | None:intergenic | 20.0% |
| !! | TTTCAATTGACATAAGTTTA+TGG | - | chr4_2:75527611-75527630 | Msa0622780:CDS | 20.0% |
| !! | TAAACATTGATAAGCTTATA+AGG | + | chr4_2:75527657-75527676 | None:intergenic | 20.0% |
| !! | AAAGAAGAGATATATTATAG+TGG | + | chr4_2:75528764-75528783 | None:intergenic | 20.0% |
| !!! | CTATAATATATCTCTTCTTT+TGG | - | chr4_2:75528764-75528783 | Msa0622780:intron | 20.0% |
| !!! | GGAATTATATTTTCAAATGT+AGG | + | chr4_2:75528929-75528948 | None:intergenic | 20.0% |
| !! | AGCAAACACAATAAAATATA+TGG | + | chr4_2:75529450-75529469 | None:intergenic | 20.0% |
| !! | ACAGTTAAATATTGTGATAT+TGG | - | chr4_2:75529482-75529501 | Msa0622780:intron | 20.0% |
| !! | ATCACTGAAAAACATAATTA+AGG | + | chr4_2:75529574-75529593 | None:intergenic | 20.0% |
| !!! | AATTATGTTTTTCAGTGATT+TGG | - | chr4_2:75529575-75529594 | Msa0622780:intron | 20.0% |
| !! | AATAAAAACTATCAGTCAAA+AGG | + | chr4_2:75530008-75530027 | None:intergenic | 20.0% |
| !!! | AATTTTAGTTTCGCTATTTA+GGG | - | chr4_2:75530177-75530196 | Msa0622780:intron | 20.0% |
| !! | ATTTAGTGTAATTTGGAAAA+AGG | - | chr4_2:75530231-75530250 | Msa0622780:intron | 20.0% |
| !!! | TTTTCCTCTTTTTTTTATGC+AGG | - | chr4_2:75526361-75526380 | Msa0622780:CDS | 25.0% |
| ! | TATTCCTGCATAAAAAAAAG+AGG | + | chr4_2:75526368-75526387 | None:intergenic | 25.0% |
| !! | ATCAAAACATTTTCTCTTCA+AGG | - | chr4_2:75526390-75526409 | Msa0622780:CDS | 25.0% |
| ! | ATAAAAAAGAATTGGTGTGA+TGG | + | chr4_2:75526489-75526508 | None:intergenic | 25.0% |
| ! | GACATAGAATAGTAAATGTT+AGG | - | chr4_2:75526564-75526583 | Msa0622780:intron | 25.0% |
| ! | GCTTAATTAATTTCTGATTC+TGG | - | chr4_2:75526597-75526616 | Msa0622780:intron | 25.0% |
| !!! | TTCTGATTCTGGAAAATTTT+AGG | - | chr4_2:75526608-75526627 | Msa0622780:intron | 25.0% |
| ! | ATTTGTGACAATATTTCACA+AGG | + | chr4_2:75527490-75527509 | None:intergenic | 25.0% |
| ! | ATTGAAAAATTCCCATAACT+TGG | + | chr4_2:75527598-75527617 | None:intergenic | 25.0% |
| ! | AAAAATGTCAACAACAAATG+TGG | + | chr4_2:75527994-75528013 | None:intergenic | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+TGG | - | chr4_2:75528390-75528409 | Msa0622780:intron | 25.0% |
| ! | TCATTTCTTCTACCATATTA+AGG | - | chr4_2:75528673-75528692 | Msa0622780:intron | 25.0% |
| !! | TTTTTGTATCCCATTGATAT+AGG | + | chr4_2:75528801-75528820 | None:intergenic | 25.0% |
| ! | TATCAATGGGATACAAAAAA+AGG | - | chr4_2:75528802-75528821 | Msa0622780:intron | 25.0% |
| ! | CAGAAGTCAAAATAAGATAA+AGG | + | chr4_2:75528950-75528969 | None:intergenic | 25.0% |
| ! | TATCCTTACATATGCTAATT+TGG | - | chr4_2:75529250-75529269 | Msa0622780:intron | 25.0% |
| ! | GATATGTCCATAAATTTCAA+GGG | + | chr4_2:75529354-75529373 | None:intergenic | 25.0% |
| ! | TGATATGTCCATAAATTTCA+AGG | + | chr4_2:75529355-75529374 | None:intergenic | 25.0% |
| ! | GAAATTTATGGACATATCAT+TGG | - | chr4_2:75529356-75529375 | Msa0622780:intron | 25.0% |
| !!! | CAAATTTTCAGTTTGCTTAA+TGG | + | chr4_2:75529513-75529532 | None:intergenic | 25.0% |
| ! | AACAAAATTCTAACCTTATC+TGG | + | chr4_2:75529654-75529673 | None:intergenic | 25.0% |
| ! | TTACTTTGTGTTATCATTGA+TGG | - | chr4_2:75529714-75529733 | Msa0622780:intron | 25.0% |
| !!! | GATTATGCAATTGTGTTTTT+TGG | - | chr4_2:75530062-75530081 | Msa0622780:CDS | 25.0% |
| !!! | CAATTTTAGTTTCGCTATTT+AGG | - | chr4_2:75530176-75530195 | Msa0622780:intron | 25.0% |
| !! | TTTGGAAAAAGGAGAATTTT+AGG | - | chr4_2:75530242-75530261 | Msa0622780:intron | 25.0% |
| !! | TTGGAAAAAGGAGAATTTTA+GGG | - | chr4_2:75530243-75530262 | Msa0622780:intron | 25.0% |
| ! | GTACAATCTTATGATAGAAT+TGG | + | chr4_2:75530759-75530778 | None:intergenic | 25.0% |
| ! | ATCATAAGATTGTACTAGTA+AGG | - | chr4_2:75530764-75530783 | Msa0622780:five_prime_UTR | 25.0% |
| TGAAACAAAAGTTGCAACTT+TGG | + | chr4_2:75526204-75526223 | None:intergenic | 30.0% | |
| !! | AGTTGCAACTTTTGTTTCAA+TGG | - | chr4_2:75526205-75526224 | Msa0622780:CDS | 30.0% |
| AAGAAGAGAAGAGATTTCAT+TGG | + | chr4_2:75526264-75526283 | None:intergenic | 30.0% | |
| TTGATTACATTACCTGAAGT+TGG | + | chr4_2:75526304-75526323 | None:intergenic | 30.0% | |
| ! | AATGAATACCTTTTCCAAGT+TGG | + | chr4_2:75526448-75526467 | None:intergenic | 30.0% |
| GGTTCCATAGAAATTCAAAT+TGG | - | chr4_2:75526838-75526857 | Msa0622780:intron | 30.0% | |
| CCTACCAATTTGAATTTCTA+TGG | + | chr4_2:75526845-75526864 | None:intergenic | 30.0% | |
| CCATAGAAATTCAAATTGGT+AGG | - | chr4_2:75526842-75526861 | Msa0622780:intron | 30.0% | |
| TAGAAATTCAAATTGGTAGG+AGG | - | chr4_2:75526845-75526864 | Msa0622780:intron | 30.0% | |
| GCTTTACTTGGAAGAATTAA+GGG | - | chr4_2:75526867-75526886 | Msa0622780:intron | 30.0% | |
| TTCGAAAAACTGTCATGAAA+TGG | - | chr4_2:75526933-75526952 | Msa0622780:intron | 30.0% | |
| TTATTTCCATAAGCTCTTCA+AGG | - | chr4_2:75527253-75527272 | Msa0622780:intron | 30.0% | |
| ! | TTATTTCTTCAACCAACCAT+AGG | + | chr4_2:75527386-75527405 | None:intergenic | 30.0% |
| !! | AGTAGTTGTTAATTTGTGCT+CGG | + | chr4_2:75527459-75527478 | None:intergenic | 30.0% |
| TAGCATGTTTCACGAATTTA+AGG | + | chr4_2:75527927-75527946 | None:intergenic | 30.0% | |
| AAATTCGTGAAACATGCTAA+TGG | - | chr4_2:75527928-75527947 | Msa0622780:intron | 30.0% | |
| ATTATCGATGTCCATAACAA+AGG | + | chr4_2:75527961-75527980 | None:intergenic | 30.0% | |
| TGTATAAACAGTATGTGTGT+TGG | + | chr4_2:75528161-75528180 | None:intergenic | 30.0% | |
| ! | GTGTATTTGATAATCTTACC+TGG | - | chr4_2:75528182-75528201 | Msa0622780:CDS | 30.0% |
| GCTTACTAGATTTATCTGAT+TGG | - | chr4_2:75528624-75528643 | Msa0622780:intron | 30.0% | |
| ! | TAACTTGTGGTACCTTAATA+TGG | + | chr4_2:75528688-75528707 | None:intergenic | 30.0% |
| !!! | GACAATTTGCTTTTAACTTG+TGG | + | chr4_2:75528701-75528720 | None:intergenic | 30.0% |
| AATTAAAGAGTTGGCATTTG+AGG | - | chr4_2:75529102-75529121 | Msa0622780:CDS | 30.0% | |
| ATATTGCTGTCTTAAGAAGT+TGG | + | chr4_2:75529208-75529227 | None:intergenic | 30.0% | |
| TAAGACAGCAATATTTGACA+AGG | - | chr4_2:75529214-75529233 | Msa0622780:intron | 30.0% | |
| TTAGCATATGTAAGGATACA+TGG | + | chr4_2:75529248-75529267 | None:intergenic | 30.0% | |
| TCACCAAATTAGCATATGTA+AGG | + | chr4_2:75529256-75529275 | None:intergenic | 30.0% | |
| AGAATACTGATAAGAGTCAA+GGG | + | chr4_2:75529331-75529350 | None:intergenic | 30.0% | |
| GTATTCTCCCTTGAAATTTA+TGG | - | chr4_2:75529344-75529363 | Msa0622780:intron | 30.0% | |
| TATAAAAAGTAATCCTCCAC+AGG | + | chr4_2:75529612-75529631 | None:intergenic | 30.0% | |
| CGAGATAAAATGTTAAAGCA+AGG | + | chr4_2:75529679-75529698 | None:intergenic | 30.0% | |
| CATGAACTTCAGTAATGATA+AGG | + | chr4_2:75529925-75529944 | None:intergenic | 30.0% | |
| !! | GATAGTTTTTATTTGCCAAG+TGG | - | chr4_2:75530015-75530034 | Msa0622780:CDS | 30.0% |
| !!! | GCAATTGTGTTTTTTGGTTT+TGG | - | chr4_2:75530068-75530087 | Msa0622780:CDS | 30.0% |
| !!! | ATTGTGTTTTTTGGTTTTGG+AGG | - | chr4_2:75530071-75530090 | Msa0622780:CDS | 30.0% |
| CTAGCAGATTTAGTGTAATT+TGG | - | chr4_2:75530224-75530243 | Msa0622780:intron | 30.0% | |
| !! | AATTATTTAACTTGGCTGCT+AGG | + | chr4_2:75530285-75530304 | None:intergenic | 30.0% |
| ACAATGATGAAGCCATATAT+AGG | + | chr4_2:75530368-75530387 | None:intergenic | 30.0% | |
| GCAAATCCAAACCAAATTTA+AGG | - | chr4_2:75530413-75530432 | Msa0622780:intron | 30.0% | |
| AATCAATCAAGCAATGATCA+AGG | + | chr4_2:75530621-75530640 | None:intergenic | 30.0% | |
| TTGATCATTGCTTGATTGAT+TGG | - | chr4_2:75530620-75530639 | Msa0622780:intron | 30.0% | |
| AATTCAAGTACCTTCAAGAA+CGG | - | chr4_2:75530665-75530684 | Msa0622780:CDS | 30.0% | |
| TTGAAGTTCTCAAAAAACCA+AGG | + | chr4_2:75530804-75530823 | None:intergenic | 30.0% | |
| TACAACGTTGTTGATGCTAT+TGG | - | chr4_2:75526141-75526160 | Msa0622780:CDS | 35.0% | |
| TTTAGGTGTGTATGCTGTAA+AGG | - | chr4_2:75526625-75526644 | Msa0622780:intron | 35.0% | |
| GAATCAACACTCTTTCAACA+AGG | - | chr4_2:75526694-75526713 | Msa0622780:intron | 35.0% | |
| ! | AGCTTCTGCTTTCGTTTTAT+TGG | - | chr4_2:75526817-75526836 | Msa0622780:intron | 35.0% |
| GGCTTTACTTGGAAGAATTA+AGG | - | chr4_2:75526866-75526885 | Msa0622780:intron | 35.0% | |
| ATCACAATCATGACTCTCAT+TGG | + | chr4_2:75526893-75526912 | None:intergenic | 35.0% | |
| ! | AATGGATTCATCTGATGAAG+AGG | - | chr4_2:75526951-75526970 | Msa0622780:intron | 35.0% |
| AAAGAGAACTTCTCAGAGTA+AGG | + | chr4_2:75527072-75527091 | None:intergenic | 35.0% | |
| CCATAGGATTAGATCATGAT+TGG | + | chr4_2:75527370-75527389 | None:intergenic | 35.0% | |
| CCAATCATGATCTAATCCTA+TGG | - | chr4_2:75527367-75527386 | Msa0622780:intron | 35.0% | |
| TCATGATCTAATCCTATGGT+TGG | - | chr4_2:75527371-75527390 | Msa0622780:intron | 35.0% | |
| AAGAAATCAGAAGCTGAGTA+TGG | + | chr4_2:75527530-75527549 | None:intergenic | 35.0% | |
| ACTTGGAAGCTAATCGAAAT+TGG | + | chr4_2:75527581-75527600 | None:intergenic | 35.0% | |
| !! | TTCGATTAGCTTCCAAGTTA+TGG | - | chr4_2:75527583-75527602 | Msa0622780:CDS | 35.0% |
| !! | TCGATTAGCTTCCAAGTTAT+GGG | - | chr4_2:75527584-75527603 | Msa0622780:CDS | 35.0% |
| ACCAGTACAGAGTAAAGAAT+GGG | + | chr4_2:75527872-75527891 | None:intergenic | 35.0% | |
| ATGGTAAGACTCCTTTGTTA+TGG | - | chr4_2:75527947-75527966 | Msa0622780:intron | 35.0% | |
| ACTCTGATGATAATAATGCC+AGG | + | chr4_2:75528203-75528222 | None:intergenic | 35.0% | |
| TTGTCAAATAGTGGCTATAG+TGG | - | chr4_2:75528399-75528418 | Msa0622780:intron | 35.0% | |
| ! | ATAGCAGTTTGTTCAAACTC+TGG | + | chr4_2:75528445-75528464 | None:intergenic | 35.0% |
| GATTTATCTGATTGGAAACC+TGG | - | chr4_2:75528632-75528651 | Msa0622780:intron | 35.0% | |
| ATATGGTAGAAGAAATGACC+TGG | + | chr4_2:75528671-75528690 | None:intergenic | 35.0% | |
| TCATATTTCTCTTTCTCTGC+AGG | + | chr4_2:75528723-75528742 | None:intergenic | 35.0% | |
| ! | ATTATAGTGGTCTGAAACAC+AGG | + | chr4_2:75528751-75528770 | None:intergenic | 35.0% |
| !! | TATCTCTTCTTTTGGAAGCT+TGG | - | chr4_2:75528772-75528791 | Msa0622780:intron | 35.0% |
| TCGGAAGAATCAATATCATC+TGG | + | chr4_2:75529061-75529080 | None:intergenic | 35.0% | |
| CAGGATGCAAATTAAAGAGT+TGG | - | chr4_2:75529093-75529112 | Msa0622780:CDS | 35.0% | |
| GAGAATACTGATAAGAGTCA+AGG | + | chr4_2:75529332-75529351 | None:intergenic | 35.0% | |
| AAAACAAAGTCCCACAAAGT+TGG | + | chr4_2:75529410-75529429 | None:intergenic | 35.0% | |
| TGATATGTCGAATCCAGATA+AGG | - | chr4_2:75529638-75529657 | Msa0622780:intron | 35.0% | |
| AAGGCAGATCAATAATACTG+AGG | + | chr4_2:75529906-75529925 | None:intergenic | 35.0% | |
| TGTCTTGCTTCAGACAATAA+AGG | + | chr4_2:75529953-75529972 | None:intergenic | 35.0% | |
| ! | GACAACAGTCTTCAAGTTAA+AGG | - | chr4_2:75529969-75529988 | Msa0622780:CDS | 35.0% |
| !!! | TGTTTTTTGGTTTTGGAGGA+AGG | - | chr4_2:75530075-75530094 | Msa0622780:CDS | 35.0% |
| ! | GCTATAAGTGTTGCAAATAG+TGG | - | chr4_2:75530097-75530116 | Msa0622780:CDS | 35.0% |
| GTACTATAGCACTTTAGCAT+TGG | - | chr4_2:75530119-75530138 | Msa0622780:CDS | 35.0% | |
| CTAAATCTGCTAGCATAAAC+TGG | + | chr4_2:75530217-75530236 | None:intergenic | 35.0% | |
| GCGGCACAAATTATTTAACT+TGG | + | chr4_2:75530293-75530312 | None:intergenic | 35.0% | |
| !! | TGGTTTGGATTTGCACTTTT+TGG | + | chr4_2:75530407-75530426 | None:intergenic | 35.0% |
| GTAAGGCCTTAAATTTGGTT+TGG | + | chr4_2:75530422-75530441 | None:intergenic | 35.0% | |
| GACATGTAAGGCCTTAAATT+TGG | + | chr4_2:75530427-75530446 | None:intergenic | 35.0% | |
| TATGAATTGGACAGGAACAA+GGG | + | chr4_2:75530457-75530476 | None:intergenic | 35.0% | |
| ATATGAATTGGACAGGAACA+AGG | + | chr4_2:75530458-75530477 | None:intergenic | 35.0% | |
| GATGAGAATAAGTGTGGAAA+TGG | + | chr4_2:75530500-75530519 | None:intergenic | 35.0% | |
| ACTATGGAACTCAACCTTAA+AGG | - | chr4_2:75530532-75530551 | Msa0622780:CDS | 35.0% | |
| CTTGAATTGGATCTGTTTGT+TGG | + | chr4_2:75530653-75530672 | None:intergenic | 35.0% | |
| !! | GTTCTTGAAGGTACTTGAAT+TGG | + | chr4_2:75530666-75530685 | None:intergenic | 35.0% |
| ! | ATAATTGCTACACCCTTTTC+CGG | + | chr4_2:75530709-75530728 | None:intergenic | 35.0% |
| TGTACTAGTAAGGTTCTCAA+TGG | - | chr4_2:75530774-75530793 | Msa0622780:five_prime_UTR | 35.0% | |
| GAGATAATAGGGCAAATTGG+TGG | + | chr4_2:75526233-75526252 | None:intergenic | 40.0% | |
| GGAGAGATAATAGGGCAAAT+TGG | + | chr4_2:75526236-75526255 | None:intergenic | 40.0% | |
| TGGCACAAGGAGAGATAATA+GGG | + | chr4_2:75526244-75526263 | None:intergenic | 40.0% | |
| TTGGCACAAGGAGAGATAAT+AGG | + | chr4_2:75526245-75526264 | None:intergenic | 40.0% | |
| GAAGAGATTTCATTGGCACA+AGG | + | chr4_2:75526257-75526276 | None:intergenic | 40.0% | |
| !! | TACATTACCTGAAGTTGGTG+AGG | + | chr4_2:75526299-75526318 | None:intergenic | 40.0% |
| GTCAAACATGATGACCAACT+TGG | - | chr4_2:75526431-75526450 | Msa0622780:CDS | 40.0% | |
| CATGATGACCAACTTGGAAA+AGG | - | chr4_2:75526437-75526456 | Msa0622780:CDS | 40.0% | |
| TGCTGTAAAGGACTTCAAAG+AGG | - | chr4_2:75526637-75526656 | Msa0622780:intron | 40.0% | |
| ! | AGAGGATCAACTTGTTCTCA+AGG | - | chr4_2:75526655-75526674 | Msa0622780:intron | 40.0% |
| TCAAGGACCAAATGCTTGTT+GGG | - | chr4_2:75526672-75526691 | Msa0622780:intron | 40.0% | |
| ! | GTTGATTCCCAACAAGCATT+TGG | + | chr4_2:75526682-75526701 | None:intergenic | 40.0% |
| AATTGGTAGGAGGCTTTACT+TGG | - | chr4_2:75526855-75526874 | Msa0622780:intron | 40.0% | |
| GAGAGTCATGATTGTGATGT+AGG | - | chr4_2:75526895-75526914 | Msa0622780:intron | 40.0% | |
| AGTACTTGGCAATGTAGTTC+TGG | - | chr4_2:75526976-75526995 | Msa0622780:intron | 40.0% | |
| !! | GGGTAGAGGAACTTTAGTTT+TGG | + | chr4_2:75527007-75527026 | None:intergenic | 40.0% |
| ! | GTTGTGGAATCGTTGATGAA+TGG | - | chr4_2:75527033-75527052 | Msa0622780:intron | 40.0% |
| CAGAGTAAGGCAATCTGAAT+TGG | + | chr4_2:75527059-75527078 | None:intergenic | 40.0% | |
| TTACTACTGCAGGTAAAAGC+CGG | - | chr4_2:75527131-75527150 | Msa0622780:CDS | 40.0% | |
| AAACTGCCTTGAAGAGCTTA+TGG | + | chr4_2:75527262-75527281 | None:intergenic | 40.0% | |
| TAAGCTCTTCAAGGCAGTTT+AGG | - | chr4_2:75527262-75527281 | Msa0622780:intron | 40.0% | |
| !! | AGTTGTTAATTTGTGCTCGG+TGG | + | chr4_2:75527456-75527475 | None:intergenic | 40.0% |
| TGTCACAAATGAATGCTGCA+TGG | - | chr4_2:75527500-75527519 | Msa0622780:intron | 40.0% | |
| GTCACAAATGAATGCTGCAT+GGG | - | chr4_2:75527501-75527520 | Msa0622780:intron | 40.0% | |
| TCACAAATGAATGCTGCATG+GGG | - | chr4_2:75527502-75527521 | Msa0622780:intron | 40.0% | |
| AGTACAGAGTAAAGAATGGG+AGG | + | chr4_2:75527869-75527888 | None:intergenic | 40.0% | |
| TCCCATTCTTTACTCTGTAC+TGG | - | chr4_2:75527868-75527887 | Msa0622780:CDS | 40.0% | |
| CACCAGTACAGAGTAAAGAA+TGG | + | chr4_2:75527873-75527892 | None:intergenic | 40.0% | |
| TATATTCCTCCTTGCTGCAA+AGG | - | chr4_2:75528069-75528088 | Msa0622780:intron | 40.0% | |
| TGCAGTAAATGCTTGTAGTC+TGG | - | chr4_2:75528239-75528258 | Msa0622780:CDS | 40.0% | |
| !!! | GACCTAGTTTTGTCACATAG+AGG | - | chr4_2:75528320-75528339 | Msa0622780:intron | 40.0% |
| TGCCTCTATGTGACAAAACT+AGG | + | chr4_2:75528325-75528344 | None:intergenic | 40.0% | |
| CCTGGTGATAAAATACATCC+AGG | + | chr4_2:75528653-75528672 | None:intergenic | 40.0% | |
| ! | CCTGGATGTATTTTATCACC+AGG | - | chr4_2:75528650-75528669 | Msa0622780:intron | 40.0% |
| AGCTTGGAGACCTATATCAA+TGG | - | chr4_2:75528788-75528807 | Msa0622780:intron | 40.0% | |
| GCTTGGAGACCTATATCAAT+GGG | - | chr4_2:75528789-75528808 | Msa0622780:intron | 40.0% | |
| ACTGATAAGAGTCAAGGGTT+TGG | + | chr4_2:75529326-75529345 | None:intergenic | 40.0% | |
| ATCTGTAAGAGCCAACTTTG+TGG | - | chr4_2:75529396-75529415 | Msa0622780:intron | 40.0% | |
| TCTGTAAGAGCCAACTTTGT+GGG | - | chr4_2:75529397-75529416 | Msa0622780:intron | 40.0% | |
| CAACCAATTCTAGATGCTCT+AGG | - | chr4_2:75529761-75529780 | Msa0622780:intron | 40.0% | |
| ! | TCACCTAGAGCATCTAGAAT+TGG | + | chr4_2:75529767-75529786 | None:intergenic | 40.0% |
| ! | GACTATTCTACTTGTTGCGA+AGG | - | chr4_2:75529788-75529807 | Msa0622780:intron | 40.0% |
| CAGACAAACAGCAGTGATAT+CGG | + | chr4_2:75529816-75529835 | None:intergenic | 40.0% | |
| AAAGCTAACTTCAAGCCACT+TGG | + | chr4_2:75530033-75530052 | None:intergenic | 40.0% | |
| GCTAGCATAAACTGGAATAG+TGG | + | chr4_2:75530209-75530228 | None:intergenic | 40.0% | |
| GCTTTCGTTTGGCCTATATA+TGG | - | chr4_2:75530353-75530372 | Msa0622780:intron | 40.0% | |
| CACTGTGATATGAATTGGAC+AGG | + | chr4_2:75530465-75530484 | None:intergenic | 40.0% | |
| GGTGACACTGTGATATGAAT+TGG | + | chr4_2:75530470-75530489 | None:intergenic | 40.0% | |
| AAGTGTGGAAATGGTAGAGA+TGG | + | chr4_2:75530491-75530510 | None:intergenic | 40.0% | |
| TCATATCAGCATCCACATTC+CGG | + | chr4_2:75530585-75530604 | None:intergenic | 40.0% | |
| AATGGCTTAACCGTTCTTGA+AGG | + | chr4_2:75530678-75530697 | None:intergenic | 40.0% | |
| AAGAACGGTTAAGCCATTTG+TGG | - | chr4_2:75530680-75530699 | Msa0622780:CDS | 40.0% | |
| AAGTACTTTCCTTGATCCAC+GGG | + | chr4_2:75530733-75530752 | None:intergenic | 40.0% | |
| CAAGTACTTTCCTTGATCCA+CGG | + | chr4_2:75530734-75530753 | None:intergenic | 40.0% | |
| ACTAGTAAGGTTCTCAATGG+AGG | - | chr4_2:75530777-75530796 | Msa0622780:five_prime_UTR | 40.0% | |
| CTAGTAAGGTTCTCAATGGA+GGG | - | chr4_2:75530778-75530797 | Msa0622780:five_prime_UTR | 40.0% | |
| ACGACAGAACACAAACGTGA+CGG | + | chr4_2:75526169-75526188 | None:intergenic | 45.0% | |
| CTCAAGGACCAAATGCTTGT+TGG | - | chr4_2:75526671-75526690 | Msa0622780:intron | 45.0% | |
| !! | CTGATGAAGAGGAGAGTACT+TGG | - | chr4_2:75526962-75526981 | Msa0622780:intron | 45.0% |
| ACTAAAGTTCCTCTACCCGA+AGG | - | chr4_2:75527009-75527028 | Msa0622780:intron | 45.0% | |
| AACGATTCCACAACACCTTC+GGG | + | chr4_2:75527027-75527046 | None:intergenic | 45.0% | |
| CAACGATTCCACAACACCTT+CGG | + | chr4_2:75527028-75527047 | None:intergenic | 45.0% | |
| TTGTAGCATGTCATGTGCAG+AGG | - | chr4_2:75527831-75527850 | Msa0622780:intron | 45.0% | |
| ! | AGAGTTCTGATCCAAGACGT+AGG | - | chr4_2:75527893-75527912 | Msa0622780:CDS | 45.0% |
| ! | GAGTTCTGATCCAAGACGTA+GGG | - | chr4_2:75527894-75527913 | Msa0622780:CDS | 45.0% |
| GAAACTCTACCTTTGCAGCA+AGG | + | chr4_2:75528081-75528100 | None:intergenic | 45.0% | |
| ! | AGTGACCTCAAAGTGTCTGT+AGG | - | chr4_2:75529014-75529033 | Msa0622780:intron | 45.0% |
| ! | TCAAAGTGTCTGTAGGTGGT+GGG | - | chr4_2:75529021-75529040 | Msa0622780:intron | 45.0% |
| ! | TTTGGTTGTTGCTTCTCCTG+TGG | - | chr4_2:75529593-75529612 | Msa0622780:intron | 45.0% |
| ! | TTGCGTCACAGTTTTCGTAG+CGG | + | chr4_2:75530159-75530178 | None:intergenic | 45.0% |
| GAGGCAGATGAGAATAAGTG+TGG | + | chr4_2:75530506-75530525 | None:intergenic | 45.0% | |
| TGAGTTCCATAGTGTAAGCG+AGG | + | chr4_2:75530525-75530544 | None:intergenic | 45.0% | |
| CATATCAGCATCCACATTCC+GGG | + | chr4_2:75530584-75530603 | None:intergenic | 45.0% | |
| GTTAAGCCATTTGTGGCTAC+CGG | - | chr4_2:75530687-75530706 | Msa0622780:CDS | 45.0% | |
| CATTTGTGGCTACCGGAAAA+GGG | - | chr4_2:75530694-75530713 | Msa0622780:CDS | 45.0% | |
| GCAATTATTCCCGTGGATCA+AGG | - | chr4_2:75530721-75530740 | Msa0622780:CDS | 45.0% | |
| !! | ATAATAAAATAAAAAAGAAT+TGG | + | chr4_2:75526497-75526516 | None:intergenic | 5.0% |
| !! | AATTTGAATAATAATTTATT+CGG | - | chr4_2:75529527-75529546 | Msa0622780:intron | 5.0% |
| !! | TGAAGTTGGTGAGGTGAAGG+AGG | + | chr4_2:75526290-75526309 | None:intergenic | 50.0% |
| TCCTTCACCTCACCAACTTC+AGG | - | chr4_2:75526289-75526308 | Msa0622780:CDS | 50.0% | |
| !! | ACCTGAAGTTGGTGAGGTGA+AGG | + | chr4_2:75526293-75526312 | None:intergenic | 50.0% |
| AAGCTTCTCCACATCCACCA+TGG | + | chr4_2:75527113-75527132 | None:intergenic | 50.0% | |
| GTGGAGAAGCTTACTACTGC+AGG | - | chr4_2:75527121-75527140 | Msa0622780:intron | 50.0% | |
| TGTCATGTGCAGAGGCTGAT+TGG | - | chr4_2:75527839-75527858 | Msa0622780:intron | 50.0% | |
| GTCATGTGCAGAGGCTGATT+GGG | - | chr4_2:75527840-75527859 | Msa0622780:intron | 50.0% | |
| TTCTGATCCAAGACGTAGGG+AGG | - | chr4_2:75527897-75527916 | Msa0622780:CDS | 50.0% | |
| ACTCTACCTTTGCAGCAAGG+AGG | + | chr4_2:75528078-75528097 | None:intergenic | 50.0% | |
| ! | GACCTCAAAGTGTCTGTAGG+TGG | - | chr4_2:75529017-75529036 | Msa0622780:intron | 50.0% |
| CACCACCTACAGACACTTTG+AGG | + | chr4_2:75529022-75529041 | None:intergenic | 50.0% | |
| ! | CTCAAAGTGTCTGTAGGTGG+TGG | - | chr4_2:75529020-75529039 | Msa0622780:intron | 50.0% |
| CATCCTGAATGACGCGTCAT+CGG | + | chr4_2:75529080-75529099 | None:intergenic | 50.0% | |
| GTGAGTGTGGTGCTTTCGTT+TGG | - | chr4_2:75530342-75530361 | Msa0622780:intron | 50.0% | |
| CATCTGCCTCGCTTACACTA+TGG | - | chr4_2:75530516-75530535 | Msa0622780:intron | 50.0% | |
| CATGGTGCGTGAGACCTTTA+AGG | + | chr4_2:75530549-75530568 | None:intergenic | 50.0% | |
| AAAGGTCTCACGCACCATGA+AGG | - | chr4_2:75530550-75530569 | Msa0622780:CDS | 50.0% | |
| ! | ACCATGAAGGAGGTATGACC+CGG | - | chr4_2:75530563-75530582 | Msa0622780:CDS | 50.0% |
| ! | CCTTTTCCGGTAGCCACAAA+TGG | + | chr4_2:75530696-75530715 | None:intergenic | 50.0% |
| CCATTTGTGGCTACCGGAAA+AGG | - | chr4_2:75530693-75530712 | Msa0622780:CDS | 50.0% | |
| GGGTGTAGCAATTATTCCCG+TGG | - | chr4_2:75530714-75530733 | Msa0622780:CDS | 50.0% | |
| !! | TCCTCTACCCGAAGGTGTTG+TGG | - | chr4_2:75527017-75527036 | Msa0622780:intron | 55.0% |
| TCCACAACACCTTCGGGTAG+AGG | + | chr4_2:75527021-75527040 | None:intergenic | 55.0% | |
| CCATGGCATGGAACAGCTTG+AGG | + | chr4_2:75527096-75527115 | None:intergenic | 55.0% | |
| CCTCAAGCTGTTCCATGCCA+TGG | - | chr4_2:75527093-75527112 | Msa0622780:intron | 55.0% | |
| CAAGCTGTTCCATGCCATGG+TGG | - | chr4_2:75527096-75527115 | Msa0622780:intron | 55.0% | |
| !! | GTTCCATGCCATGGTGGATG+TGG | - | chr4_2:75527102-75527121 | Msa0622780:intron | 55.0% |
| TCTCCACATCCACCATGGCA+TGG | + | chr4_2:75527108-75527127 | None:intergenic | 55.0% | |
| CTTCCGATGACGCGTCATTC+AGG | - | chr4_2:75529074-75529093 | Msa0622780:CDS | 55.0% | |
| ! | GGTTGTTGCTTCTCCTGTGG+AGG | - | chr4_2:75529596-75529615 | Msa0622780:intron | 55.0% |
| TTGTGCCGCCATCTAAGCAG+TGG | - | chr4_2:75530304-75530323 | Msa0622780:CDS | 55.0% | |
| TGTGCCGCCATCTAAGCAGT+GGG | - | chr4_2:75530305-75530324 | Msa0622780:CDS | 55.0% | |
| CACCACACTCACAAGAGCAG+CGG | + | chr4_2:75530334-75530353 | None:intergenic | 55.0% | |
| TTGGACAGGAACAAGGGCAG+CGG | + | chr4_2:75530451-75530470 | None:intergenic | 55.0% | |
| TCCGGGTCATACCTCCTTCA+TGG | + | chr4_2:75530567-75530586 | None:intergenic | 55.0% | |
| ! | AGGAGGTATGACCCGGAATG+TGG | - | chr4_2:75530570-75530589 | Msa0622780:CDS | 55.0% |
| AGGTTCTCAATGGAGGGCCT+TGG | - | chr4_2:75530784-75530803 | Msa0622780:five_prime_UTR | 55.0% | |
| !! | AGGAGTGCCTCCCTACGTCT+TGG | + | chr4_2:75527907-75527926 | None:intergenic | 60.0% |
| GCGTCCCACTGCTTAGATGG+CGG | + | chr4_2:75530312-75530331 | None:intergenic | 60.0% | |
| AAGGGCAGCGGGGACATGTA+AGG | + | chr4_2:75530439-75530458 | None:intergenic | 60.0% | |
| TGGACAGGAACAAGGGCAGC+GGG | + | chr4_2:75530450-75530469 | None:intergenic | 60.0% | |
| GGTCTCACGCACCATGAAGG+AGG | - | chr4_2:75530553-75530572 | Msa0622780:CDS | 60.0% | |
| GCGGCGTCCCACTGCTTAGA+TGG | + | chr4_2:75530315-75530334 | None:intergenic | 65.0% | |
| CGCCGCTGCTCTTGTGAGTG+TGG | - | chr4_2:75530329-75530348 | Msa0622780:intron | 65.0% | |
| GGACAGGAACAAGGGCAGCG+GGG | + | chr4_2:75530449-75530468 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 75526123 | 75530852 | 75526123 | ID=Msa0622780;Name=Msa0622780 |
| chr4_2 | mRNA | 75526123 | 75530852 | 75526123 | ID=Msa0622780-mRNA-1;Parent=Msa0622780;Name=Msa0622780-mRNA-1;_AED=0.13;_eAED=0.16;_QI=101|0.75|0.69|1|0.91|0.92|13|0|521 |
| chr4_2 | exon | 75526123 | 75526492 | 75526123 | ID=Msa0622780-mRNA-1:exon:22941;Parent=Msa0622780-mRNA-1 |
| chr4_2 | exon | 75527123 | 75527235 | 75527123 | ID=Msa0622780-mRNA-1:exon:22940;Parent=Msa0622780-mRNA-1 |
| chr4_2 | exon | 75527316 | 75527385 | 75527316 | ID=Msa0622780-mRNA-1:exon:22939;Parent=Msa0622780-mRNA-1 |
| chr4_2 | exon | 75527576 | 75527630 | 75527576 | ID=Msa0622780-mRNA-1:exon:22938;Parent=Msa0622780-mRNA-1 |
| chr4_2 | exon | 75527736 | 75527775 | 75527736 | ID=Msa0622780-mRNA-1:exon:22937;Parent=Msa0622780-mRNA-1 |
| chr4_2 | exon | 75527852 | 75527939 | 75527852 | ID=Msa0622780-mRNA-1:exon:22936;Parent=Msa0622780-mRNA-1 |
| chr4_2 | exon | 75528152 | 75528303 | 75528152 | ID=Msa0622780-mRNA-1:exon:22935;Parent=Msa0622780-mRNA-1 |
| chr4_2 | exon | 75528885 | 75528916 | 75528885 | ID=Msa0622780-mRNA-1:exon:22934;Parent=Msa0622780-mRNA-1 |
| chr4_2 | exon | 75529026 | 75529138 | 75529026 | ID=Msa0622780-mRNA-1:exon:22933;Parent=Msa0622780-mRNA-1 |
| chr4_2 | exon | 75529893 | 75530176 | 75529893 | ID=Msa0622780-mRNA-1:exon:22932;Parent=Msa0622780-mRNA-1 |
| chr4_2 | exon | 75530260 | 75530345 | 75530260 | ID=Msa0622780-mRNA-1:exon:22931;Parent=Msa0622780-mRNA-1 |
| chr4_2 | exon | 75530517 | 75530592 | 75530517 | ID=Msa0622780-mRNA-1:exon:22930;Parent=Msa0622780-mRNA-1 |
| chr4_2 | exon | 75530665 | 75530852 | 75530665 | ID=Msa0622780-mRNA-1:exon:22929;Parent=Msa0622780-mRNA-1 |
| chr4_2 | five_prime_UTR | 75530752 | 75530852 | 75530752 | ID=Msa0622780-mRNA-1:five_prime_utr;Parent=Msa0622780-mRNA-1 |
| chr4_2 | CDS | 75530665 | 75530751 | 75530665 | ID=Msa0622780-mRNA-1:cds;Parent=Msa0622780-mRNA-1 |
| chr4_2 | CDS | 75530517 | 75530592 | 75530517 | ID=Msa0622780-mRNA-1:cds;Parent=Msa0622780-mRNA-1 |
| chr4_2 | CDS | 75530260 | 75530345 | 75530260 | ID=Msa0622780-mRNA-1:cds;Parent=Msa0622780-mRNA-1 |
| chr4_2 | CDS | 75529893 | 75530176 | 75529893 | ID=Msa0622780-mRNA-1:cds;Parent=Msa0622780-mRNA-1 |
| chr4_2 | CDS | 75529026 | 75529138 | 75529026 | ID=Msa0622780-mRNA-1:cds;Parent=Msa0622780-mRNA-1 |
| chr4_2 | CDS | 75528885 | 75528916 | 75528885 | ID=Msa0622780-mRNA-1:cds;Parent=Msa0622780-mRNA-1 |
| chr4_2 | CDS | 75528152 | 75528303 | 75528152 | ID=Msa0622780-mRNA-1:cds;Parent=Msa0622780-mRNA-1 |
| chr4_2 | CDS | 75527852 | 75527939 | 75527852 | ID=Msa0622780-mRNA-1:cds;Parent=Msa0622780-mRNA-1 |
| chr4_2 | CDS | 75527736 | 75527775 | 75527736 | ID=Msa0622780-mRNA-1:cds;Parent=Msa0622780-mRNA-1 |
| chr4_2 | CDS | 75527576 | 75527630 | 75527576 | ID=Msa0622780-mRNA-1:cds;Parent=Msa0622780-mRNA-1 |
| chr4_2 | CDS | 75527316 | 75527385 | 75527316 | ID=Msa0622780-mRNA-1:cds;Parent=Msa0622780-mRNA-1 |
| chr4_2 | CDS | 75527123 | 75527235 | 75527123 | ID=Msa0622780-mRNA-1:cds;Parent=Msa0622780-mRNA-1 |
| chr4_2 | CDS | 75526123 | 75526492 | 75526123 | ID=Msa0622780-mRNA-1:cds;Parent=Msa0622780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
