Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336570 | XP_039686690.1 | 94.226 | 433 | 25 | 0 | 1 | 433 | 1 | 433 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336570 | sp|Q9LJ44|COL12_ARATH | 38.283 | 431 | 189 | 13 | 1 | 428 | 1 | 357 | 8.45e-81 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0336570 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0336570 | Msa0622820 | 0.951112 | 4.053819e-109 | -8.615850e-47 |
| Msa0336570 | Msa1377280 | 0.884247 | 2.256817e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336570 | MtrunA17_Chr2g0322941 | 93.500 | 200 | 13 | 0 | 1 | 200 | 40 | 239 | 4.27e-138 | 395 |
| Msa0336570 | MtrunA17_Chr2g0322951 | 95.238 | 147 | 7 | 0 | 287 | 433 | 1 | 147 | 1.29e-100 | 296 |
| Msa0336570 | MtrunA17_Chr5g0429341 | 34.240 | 441 | 241 | 13 | 1 | 429 | 1 | 404 | 2.11e-58 | 196 |
| Msa0336570 | MtrunA17_Chr3g0120711 | 33.333 | 447 | 238 | 14 | 1 | 429 | 1 | 405 | 5.86e-57 | 193 |
| Msa0336570 | MtrunA17_Chr1g0209071 | 44.231 | 104 | 57 | 1 | 1 | 104 | 1 | 103 | 3.74e-22 | 97.1 |
| Msa0336570 | MtrunA17_Chr7g0268691 | 44.000 | 100 | 55 | 1 | 5 | 103 | 20 | 119 | 3.39e-20 | 91.7 |
| Msa0336570 | MtrunA17_Chr7g0251781 | 40.741 | 108 | 56 | 1 | 1 | 100 | 1 | 108 | 3.40e-18 | 85.9 |
| Msa0336570 | MtrunA17_Chr7g0251781 | 26.716 | 408 | 245 | 16 | 45 | 422 | 2 | 385 | 6.12e-15 | 76.3 |
| Msa0336570 | MtrunA17_Chr3g0136701 | 45.122 | 82 | 45 | 0 | 4 | 85 | 5 | 86 | 5.60e-14 | 72.0 |
| Msa0336570 | MtrunA17_Chr4g0072871 | 39.024 | 82 | 50 | 0 | 4 | 85 | 21 | 102 | 1.62e-12 | 68.6 |
| Msa0336570 | MtrunA17_Chr1g0150471 | 39.024 | 82 | 50 | 0 | 4 | 85 | 5 | 86 | 4.16e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336570 | AT3G21880.3 | 38.283 | 431 | 189 | 13 | 1 | 428 | 5 | 361 | 6.93e-82 | 256 |
| Msa0336570 | AT3G21880.2 | 38.283 | 431 | 189 | 13 | 1 | 428 | 5 | 361 | 6.93e-82 | 256 |
| Msa0336570 | AT3G21880.1 | 38.283 | 431 | 189 | 13 | 1 | 428 | 1 | 357 | 8.59e-82 | 256 |
| Msa0336570 | AT4G15250.1 | 36.175 | 434 | 167 | 11 | 1 | 430 | 1 | 328 | 8.11e-68 | 219 |
| Msa0336570 | AT5G48250.1 | 32.438 | 447 | 204 | 13 | 1 | 429 | 1 | 367 | 6.65e-56 | 189 |
| Msa0336570 | AT3G07650.3 | 32.892 | 453 | 193 | 15 | 1 | 429 | 1 | 366 | 4.47e-55 | 187 |
| Msa0336570 | AT3G07650.2 | 32.892 | 453 | 193 | 15 | 1 | 429 | 1 | 366 | 4.47e-55 | 187 |
| Msa0336570 | AT3G07650.4 | 32.892 | 453 | 193 | 15 | 1 | 429 | 1 | 366 | 4.47e-55 | 187 |
| Msa0336570 | AT3G07650.1 | 32.892 | 453 | 193 | 15 | 1 | 429 | 1 | 366 | 4.47e-55 | 187 |
| Msa0336570 | AT1G68190.1 | 45.113 | 133 | 65 | 2 | 1 | 129 | 10 | 138 | 1.47e-26 | 110 |
| Msa0336570 | AT1G68190.3 | 45.113 | 133 | 65 | 2 | 1 | 129 | 10 | 138 | 1.47e-26 | 110 |
| Msa0336570 | AT1G68190.2 | 45.113 | 133 | 65 | 2 | 1 | 129 | 39 | 167 | 2.38e-26 | 110 |
| Msa0336570 | AT2G33500.1 | 45.098 | 102 | 54 | 1 | 5 | 104 | 12 | 113 | 2.75e-23 | 101 |
| Msa0336570 | AT2G33500.1 | 71.111 | 45 | 13 | 0 | 376 | 420 | 355 | 399 | 3.39e-12 | 68.2 |
| Msa0336570 | AT2G33500.2 | 45.098 | 102 | 54 | 1 | 5 | 104 | 12 | 113 | 3.08e-23 | 101 |
| Msa0336570 | AT2G33500.2 | 71.111 | 45 | 13 | 0 | 376 | 420 | 354 | 398 | 3.28e-12 | 68.2 |
| Msa0336570 | AT1G28050.1 | 44.118 | 102 | 55 | 1 | 5 | 104 | 9 | 110 | 2.48e-22 | 99.0 |
| Msa0336570 | AT1G28050.1 | 68.750 | 48 | 15 | 0 | 376 | 423 | 383 | 430 | 3.51e-12 | 68.2 |
| Msa0336570 | AT2G47890.2 | 39.552 | 134 | 81 | 0 | 4 | 137 | 12 | 145 | 6.74e-21 | 91.7 |
| Msa0336570 | AT2G47890.3 | 39.552 | 134 | 81 | 0 | 4 | 137 | 12 | 145 | 1.01e-20 | 92.4 |
| Msa0336570 | AT2G47890.1 | 41.803 | 122 | 71 | 0 | 4 | 125 | 12 | 133 | 1.28e-20 | 92.8 |
| Msa0336570 | AT1G05290.1 | 27.316 | 421 | 227 | 14 | 22 | 432 | 10 | 361 | 2.36e-16 | 80.5 |
| Msa0336570 | AT5G24930.1 | 41.463 | 82 | 48 | 0 | 4 | 85 | 5 | 86 | 2.27e-13 | 71.6 |
| Msa0336570 | AT3G02380.1 | 33.333 | 150 | 72 | 4 | 277 | 419 | 191 | 319 | 2.20e-12 | 68.6 |
| Msa0336570 | AT2G24790.1 | 37.805 | 82 | 51 | 0 | 4 | 85 | 7 | 88 | 3.23e-11 | 64.3 |
| Msa0336570 | AT2G24790.2 | 37.805 | 82 | 51 | 0 | 4 | 85 | 7 | 88 | 5.65e-11 | 62.8 |
Find 119 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTTGGTATCTCATTT+TGG | 0.141143 | 2_4:-55997931 | None:intergenic |
| TTCTAACCTGTTAAAGTTTA+GGG | 0.210642 | 2_4:-55999973 | None:intergenic |
| GGAATAAGGTTTGCTATTCT+TGG | 0.220277 | 2_4:-56000155 | None:intergenic |
| ATTCTAACCTGTTAAAGTTT+AGG | 0.222643 | 2_4:-55999974 | None:intergenic |
| ACTAAGGTTTATCACTTCTT+AGG | 0.226490 | 2_4:-56000094 | None:intergenic |
| TTTGAATTTGATGGAATAAT+AGG | 0.232482 | 2_4:-55996341 | None:intergenic |
| CTACACTGGTTGTCCCTCTT+TGG | 0.263095 | 2_4:+55996097 | Msa0336570:CDS |
| ATCGCATTGGGAATCAAATT+TGG | 0.271470 | 2_4:+55997878 | Msa0336570:CDS |
| CAAATAAACACAGGCTAATA+AGG | 0.293076 | 2_4:+56000023 | Msa0336570:three_prime_UTR |
| CTCTCTGTCAAGTTTGTGAT+TGG | 0.298207 | 2_4:+55996024 | Msa0336570:CDS |
| GATCCGCCCTAAACTTTAAC+AGG | 0.308713 | 2_4:+55999967 | Msa0336570:three_prime_UTR |
| TGGCAGACTTATCTAAGATT+TGG | 0.313493 | 2_4:+55996117 | Msa0336570:CDS |
| AAAGAATGGCTTCGTTGGTT+TGG | 0.319776 | 2_4:+55996256 | Msa0336570:CDS |
| ATTCAATTACCTAACATAAA+TGG | 0.323167 | 2_4:+55997795 | Msa0336570:CDS |
| CCTCAGAGTCAAACTCATTC+AGG | 0.325054 | 2_4:+55997765 | Msa0336570:CDS |
| ATGCTAACTAATCCGGAATA+AGG | 0.328887 | 2_4:-56000169 | None:intergenic |
| CTGCTTTCACCATTTATGTT+AGG | 0.331564 | 2_4:-55997804 | None:intergenic |
| AGGAATAGAATGTCTATTAA+TGG | 0.335494 | 2_4:+55997320 | Msa0336570:CDS |
| ATCTAAGATTTGGCCACATT+TGG | 0.339459 | 2_4:+55996127 | Msa0336570:CDS |
| CGTCTTTGCTTGCATTGTGA+TGG | 0.374410 | 2_4:+55995894 | Msa0336570:CDS |
| TGTGTGCAGTTTGAATTTGA+TGG | 0.391221 | 2_4:-55996350 | None:intergenic |
| GTCTTTGCTTGCATTGTGAT+GGG | 0.397890 | 2_4:+55995895 | Msa0336570:CDS |
| TCTTTAACTAATTAGCTTCA+AGG | 0.399809 | 2_4:+55997147 | Msa0336570:intron |
| AAGCAAAGACGAGCGGAATC+AGG | 0.415903 | 2_4:-55995882 | None:intergenic |
| TGATTGCAGATAACGTTTAG+TGG | 0.423984 | 2_4:-55998914 | None:intergenic |
| GATACATGTTCTTGACTTGC+TGG | 0.427788 | 2_4:+56000209 | Msa0336570:three_prime_UTR |
| TCAAGGATGCCATGATGTTA+AGG | 0.427984 | 2_4:+55997164 | Msa0336570:CDS |
| AAATTCATCAAATGCTGCTT+GGG | 0.439410 | 2_4:+55996157 | Msa0336570:CDS |
| CCCGAAAAGAATGGCTTCGT+TGG | 0.443487 | 2_4:+55996251 | Msa0336570:CDS |
| TGACCGCCGCAATCAACATT+TGG | 0.447113 | 2_4:+55996220 | Msa0336570:CDS |
| AAATAATTGAGGAAGTATAA+AGG | 0.451706 | 2_4:-56000274 | None:intergenic |
| TCATCCTGGTGAATCGCATT+GGG | 0.451754 | 2_4:+55997866 | Msa0336570:CDS |
| GTAGTGTTTGTGAAGGACTA+AGG | 0.456130 | 2_4:-56000110 | None:intergenic |
| AAGAATAGCAAACCTTATTC+CGG | 0.461316 | 2_4:+56000157 | Msa0336570:three_prime_UTR |
| GCAGGATATGAGATTCTGAT+TGG | 0.466120 | 2_4:+55998950 | Msa0336570:three_prime_UTR |
| CAAATTCATCAAATGCTGCT+TGG | 0.474377 | 2_4:+55996156 | Msa0336570:CDS |
| GTTGACAATGCTAACTAATC+CGG | 0.476297 | 2_4:-56000176 | None:intergenic |
| TTAGGCAAAGCACTAGTACT+AGG | 0.478053 | 2_4:-55996185 | None:intergenic |
| TTCTTAGGAATGACAAAATG+AGG | 0.480078 | 2_4:-56000079 | None:intergenic |
| AAAGGTAGATTTGTTAAAGC+AGG | 0.483112 | 2_4:+55998858 | Msa0336570:CDS |
| TTGTTAGATCCTTAACATCA+TGG | 0.486326 | 2_4:-55997173 | None:intergenic |
| GAGCAGAAACCCGAAAAGAA+TGG | 0.491985 | 2_4:+55996242 | Msa0336570:CDS |
| TCACATTGAGACTGCGGTAG+AGG | 0.492122 | 2_4:+55997374 | Msa0336570:CDS |
| TTTCCATCATCAGGGGCTGG+TGG | 0.497075 | 2_4:+55997654 | Msa0336570:CDS |
| ACAAAATACAACCACGGAGA+TGG | 0.506317 | 2_4:+55997297 | Msa0336570:CDS |
| TGGATCAACAAATTTGATGC+AGG | 0.507571 | 2_4:+55997674 | Msa0336570:CDS |
| TTCATCCTGGTGAATCGCAT+TGG | 0.508930 | 2_4:+55997865 | Msa0336570:CDS |
| TACTCTTTCTAGCTTGCAGA+GGG | 0.512252 | 2_4:+55999933 | Msa0336570:three_prime_UTR |
| TTGGCTTTATCCCTTGCTTG+AGG | 0.520712 | 2_4:-55997912 | None:intergenic |
| GATTCCCAATGCGATTCACC+AGG | 0.521167 | 2_4:-55997870 | None:intergenic |
| GCAACAGAAGCATGCCTCTA+GGG | 0.521759 | 2_4:+55997739 | Msa0336570:CDS |
| TAACGCACAATCTAGAAGTT+CGG | 0.523526 | 2_4:-55997832 | None:intergenic |
| GATCCACCAGCCCCTGATGA+TGG | 0.526248 | 2_4:-55997657 | None:intergenic |
| GCAGTCAAATATTATTTCGT+CGG | 0.529373 | 2_4:-55997262 | None:intergenic |
| ACGAAATCAAAACCTTCGGT+TGG | 0.530911 | 2_4:-55996415 | None:intergenic |
| CTGCAAATTCTCTGTCTCGC+AGG | 0.534382 | 2_4:+55995928 | Msa0336570:CDS |
| CTTAGATAAGTCTGCCAAAG+AGG | 0.535601 | 2_4:-55996111 | None:intergenic |
| CATGTGTCAAATATGAACCT+TGG | 0.539470 | 2_4:+55996306 | Msa0336570:CDS |
| AACAGTATATGAAATAATTG+AGG | 0.540401 | 2_4:-56000285 | None:intergenic |
| GCGAATGACAAGTTGGGCGA+AGG | 0.540796 | 2_4:+55996278 | Msa0336570:CDS |
| ATTGAAACCTTCACATAGAC+CGG | 0.543497 | 2_4:-55997208 | None:intergenic |
| TGGTTTGGCGAATGACAAGT+TGG | 0.547865 | 2_4:+55996271 | Msa0336570:CDS |
| TCTTGGACAATATCTTGAGA+TGG | 0.556683 | 2_4:-56000138 | None:intergenic |
| CAAGGTTCATATTTGACACA+TGG | 0.558681 | 2_4:-55996305 | None:intergenic |
| GTTTAGTGGTCGCTCAAAAG+AGG | 0.560107 | 2_4:-55998900 | None:intergenic |
| GGTTTGGCGAATGACAAGTT+GGG | 0.560416 | 2_4:+55996272 | Msa0336570:CDS |
| GCATTGGGAATCAAATTTGG+AGG | 0.563030 | 2_4:+55997881 | Msa0336570:CDS |
| TGCAACAGAAGCATGCCTCT+AGG | 0.563513 | 2_4:+55997738 | Msa0336570:CDS |
| TTACCTCCAGTGTTTCATCC+TGG | 0.565788 | 2_4:+55997852 | Msa0336570:CDS |
| GATACAAGAAAACGCGTGAA+AGG | 0.568988 | 2_4:+55998840 | Msa0336570:CDS |
| AGGGTGCTTGTCCTCAAGCA+AGG | 0.569387 | 2_4:+55997901 | Msa0336570:CDS |
| CTTATCGCAGAGGAGCGAGC+GGG | 0.569512 | 2_4:-55995955 | None:intergenic |
| AAGATGCATACAGTTGCTGC+AGG | 0.570271 | 2_4:-56000245 | None:intergenic |
| GCAAGCTAGAAAGAGTATGT+AGG | 0.571279 | 2_4:-55999927 | None:intergenic |
| GATATGCGTCTCGCAAAGCA+AGG | 0.574066 | 2_4:+55998814 | Msa0336570:CDS |
| CATTGGGAATCAAATTTGGA+GGG | 0.578438 | 2_4:+55997882 | Msa0336570:CDS |
| GTGCTACTCACTTTCTACAC+TGG | 0.583152 | 2_4:+55996083 | Msa0336570:CDS |
| TTAGATAAGTCTGCCAAAGA+GGG | 0.584761 | 2_4:-55996110 | None:intergenic |
| AGCTTGCAGAGGGGAGTCGA+TGG | 0.587290 | 2_4:+55999943 | Msa0336570:three_prime_UTR |
| TCTGCTCCAAATGTTGATTG+CGG | 0.591802 | 2_4:-55996226 | None:intergenic |
| TTGTGGGGTTGCAAGAGCTG+TGG | 0.597112 | 2_4:+55995848 | Msa0336570:CDS |
| GCTCCAAATGTTGATTGCGG+CGG | 0.597124 | 2_4:-55996223 | None:intergenic |
| TCAGAATCTCATATCCTGCA+AGG | 0.600555 | 2_4:-55998946 | None:intergenic |
| ATGCATACAGTTGCTGCAGG+TGG | 0.602236 | 2_4:-56000242 | None:intergenic |
| GGCATGCTTCTGTTGCAACT+AGG | 0.602723 | 2_4:-55997732 | None:intergenic |
| GGATCAACAAATTTGATGCA+GGG | 0.606350 | 2_4:+55997675 | Msa0336570:CDS |
| GGAGAAGGTAGTGTTTGTGA+AGG | 0.606568 | 2_4:-56000117 | None:intergenic |
| AAGGATCTAACAATTCATGA+GGG | 0.609923 | 2_4:+55997183 | Msa0336570:CDS |
| TAAGGATCTAACAATTCATG+AGG | 0.611539 | 2_4:+55997182 | Msa0336570:CDS |
| AAATACAACCACGGAGATGG+AGG | 0.615014 | 2_4:+55997300 | Msa0336570:CDS |
| ATACTCTTTCTAGCTTGCAG+AGG | 0.626699 | 2_4:+55999932 | Msa0336570:three_prime_UTR |
| TCAAGACTCAAACCAACCGA+AGG | 0.626760 | 2_4:+55996403 | Msa0336570:CDS |
| GGGTGCTTGTCCTCAAGCAA+GGG | 0.627728 | 2_4:+55997902 | Msa0336570:CDS |
| CCTGAATGAGTTTGACTCTG+AGG | 0.628593 | 2_4:-55997765 | None:intergenic |
| TTAGTTAGCATTGTCAACCG+TGG | 0.634910 | 2_4:+56000181 | Msa0336570:three_prime_UTR |
| TTGATGCAGGGCATCAACAA+TGG | 0.635140 | 2_4:+55997687 | Msa0336570:CDS |
| CAGTTGCTGCAGGTGGACAG+TGG | 0.635643 | 2_4:-56000235 | None:intergenic |
| ACAATATCTTGAGATGGAGA+AGG | 0.640418 | 2_4:-56000132 | None:intergenic |
| TTATCGCAGAGGAGCGAGCG+GGG | 0.642930 | 2_4:-55995954 | None:intergenic |
| GAATTTGCATCAACCAAATG+TGG | 0.648426 | 2_4:-55996140 | None:intergenic |
| AGAACATGTATCGCAATCCA+CGG | 0.651370 | 2_4:-56000198 | None:intergenic |
| GGATCTAACAATTCATGAGG+GGG | 0.652382 | 2_4:+55997185 | Msa0336570:CDS |
| CGAAATTACACTTATCGCAG+AGG | 0.654750 | 2_4:-55995965 | None:intergenic |
| ATATGCGTCTCGCAAAGCAA+GGG | 0.656822 | 2_4:+55998815 | Msa0336570:CDS |
| TAACCTGTTAAAGTTTAGGG+CGG | 0.663198 | 2_4:-55999970 | None:intergenic |
| ATTCTATTCCTCCATCTCCG+TGG | 0.663894 | 2_4:-55997308 | None:intergenic |
| ACTTATCGCAGAGGAGCGAG+CGG | 0.664690 | 2_4:-55995956 | None:intergenic |
| ACAATTTATGATCGACGCAG+CGG | 0.677265 | 2_4:-55996001 | None:intergenic |
| AGGATCTAACAATTCATGAG+GGG | 0.678362 | 2_4:+55997184 | Msa0336570:CDS |
| TGTGTGTCTCAAATAAACAC+AGG | 0.679758 | 2_4:+56000014 | Msa0336570:three_prime_UTR |
| TAGCAGTCACATTGAGACTG+CGG | 0.699859 | 2_4:+55997368 | Msa0336570:CDS |
| GATTCACCAGGATGAAACAC+TGG | 0.703479 | 2_4:-55997858 | None:intergenic |
| TGACTCTGAGGAAACCCTAG+AGG | 0.704907 | 2_4:-55997753 | None:intergenic |
| ACAATGCAAGCAAAGACGAG+CGG | 0.710081 | 2_4:-55995889 | None:intergenic |
| TCACCAGGATGAAACACTGG+AGG | 0.717611 | 2_4:-55997855 | None:intergenic |
| ACTGCCACAAAATACAACCA+CGG | 0.722467 | 2_4:+55997291 | Msa0336570:CDS |
| TCTATGTGAAGGTTTCAATG+TGG | 0.759135 | 2_4:+55997212 | Msa0336570:CDS |
| GAGACAGAGAATTTGCAGAG+TGG | 0.767566 | 2_4:-55995923 | None:intergenic |
| ACTCTTTCTAGCTTGCAGAG+GGG | 0.769066 | 2_4:+55999934 | Msa0336570:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTTTTTTAAGTTTTTTTT+AGG | + | chr2_4:55996475-55996494 | Msa0336570:intron | 10.0% |
| !!! | CTAAAAAAATATTTTATAAC+CGG | - | chr2_4:55997403-55997422 | None:intergenic | 10.0% |
| !!! | AATCTTTTTTTATCATTATT+AGG | + | chr2_4:55997599-55997618 | Msa0336570:intron | 10.0% |
| !!! | CTAATCTTTTTTATTTTAGT+TGG | + | chr2_4:55996439-55996458 | Msa0336570:intron | 15.0% |
| !!! | CTTAAATTTAAAACTTATGT+GGG | - | chr2_4:55996636-55996655 | None:intergenic | 15.0% |
| !!! | TCTTAAATTTAAAACTTATG+TGG | - | chr2_4:55996637-55996656 | None:intergenic | 15.0% |
| !!! | TGATATATATTTTGAAATGA+AGG | - | chr2_4:55996703-55996722 | None:intergenic | 15.0% |
| !! | AGTTAAAGAAGAAAAATATT+TGG | - | chr2_4:55997136-55997155 | None:intergenic | 15.0% |
| !!! | CGGTTATAAAATATTTTTTT+AGG | + | chr2_4:55997401-55997420 | Msa0336570:intron | 15.0% |
| !!! | TGATATTTTGATACAAAATT+TGG | + | chr2_4:55998002-55998021 | Msa0336570:intron | 15.0% |
| !!! | TTATTTCTTTCATTAAGAAA+TGG | - | chr2_4:55999017-55999036 | None:intergenic | 15.0% |
| !! | TTATGAATAATCAGAAAAAA+TGG | - | chr2_4:56000319-56000338 | None:intergenic | 15.0% |
| !! | TTTGAATTTGATGGAATAAT+AGG | - | chr2_4:55996344-55996363 | None:intergenic | 20.0% |
| !!! | TGATTAGTTTAGTAGTAATA+TGG | + | chr2_4:55997082-55997101 | Msa0336570:intron | 20.0% |
| !!! | AAAATATTTGGTGTCAATTT+TGG | - | chr2_4:55997124-55997143 | None:intergenic | 20.0% |
| !! | ATAAAAAAAGATTTAGAGAG+AGG | - | chr2_4:55997592-55997611 | None:intergenic | 20.0% |
| !! | ATTCAATTACCTAACATAAA+TGG | + | chr2_4:55997795-55997814 | Msa0336570:CDS | 20.0% |
| !! | AACACAATTTAAATGATTAG+TGG | - | chr2_4:55998213-55998232 | None:intergenic | 20.0% |
| !!! | TAAGCAAAAATCAACATTTT+AGG | + | chr2_4:55998260-55998279 | Msa0336570:intron | 20.0% |
| !! | AACTCTATACATATATACTA+TGG | + | chr2_4:55998423-55998442 | Msa0336570:intron | 20.0% |
| !! | ACATATATACTATGGTAAAA+TGG | + | chr2_4:55998431-55998450 | Msa0336570:intron | 20.0% |
| !!! | CTTAAATTTATAAGTTGACT+TGG | + | chr2_4:55998761-55998780 | Msa0336570:intron | 20.0% |
| !! | TCGTACAAAATTATGAAAAA+TGG | + | chr2_4:55999038-55999057 | Msa0336570:intron | 20.0% |
| !!! | CTTATTTTCTGCTAATATTT+GGG | - | chr2_4:55999262-55999281 | None:intergenic | 20.0% |
| !!! | TCTTATTTTCTGCTAATATT+TGG | - | chr2_4:55999263-55999282 | None:intergenic | 20.0% |
| !! | GTGTAACTAAAATAATTCAT+AGG | + | chr2_4:55999438-55999457 | Msa0336570:intron | 20.0% |
| !!! | TCTTTTCAGTTAATTTTGTA+TGG | - | chr2_4:55999467-55999486 | None:intergenic | 20.0% |
| !! | ACAAAATTAACTGAAAAGAA+AGG | + | chr2_4:55999468-55999487 | Msa0336570:intron | 20.0% |
| !! | CAAAATTAACTGAAAAGAAA+GGG | + | chr2_4:55999469-55999488 | Msa0336570:intron | 20.0% |
| !! | AAAATTAAACAAATCAAACG+CGG | + | chr2_4:55999533-55999552 | Msa0336570:intron | 20.0% |
| !! | AGATAATCTGATATATAAAG+TGG | - | chr2_4:55999677-55999696 | None:intergenic | 20.0% |
| !!! | TATCTTATTTGTTAGAAAAG+CGG | - | chr2_4:55999837-55999856 | None:intergenic | 20.0% |
| !!! | AAATAATTGAGGAAGTATAA+AGG | - | chr2_4:56000277-56000296 | None:intergenic | 20.0% |
| !! | AACAGTATATGAAATAATTG+AGG | - | chr2_4:56000288-56000307 | None:intergenic | 20.0% |
| !! | TACAAATGACTGTTTTGTAT+TGG | + | chr2_4:55996049-55996068 | Msa0336570:CDS | 25.0% |
| !! | ACAAATGACTGTTTTGTATT+GGG | + | chr2_4:55996050-55996069 | Msa0336570:CDS | 25.0% |
| ! | ACTAATTATATGCCAATCAT+TGG | - | chr2_4:55996667-55996686 | None:intergenic | 25.0% |
| !! | TCTTTAACTAATTAGCTTCA+AGG | + | chr2_4:55997147-55997166 | Msa0336570:intron | 25.0% |
| ! | AGGAATAGAATGTCTATTAA+TGG | + | chr2_4:55997320-55997339 | Msa0336570:CDS | 25.0% |
| ! | AACAAATTTCGACAACAATT+TGG | + | chr2_4:55998026-55998045 | Msa0336570:intron | 25.0% |
| ! | GATTAATTATGTTCAGTGTA+TGG | + | chr2_4:55998073-55998092 | Msa0336570:intron | 25.0% |
| ! | TGAAAATCTGAAAATCATCA+TGG | - | chr2_4:55998176-55998195 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr2_4:55998250-55998269 | None:intergenic | 25.0% |
| ! | TATACTATGGTAAAATGGAA+CGG | + | chr2_4:55998436-55998455 | Msa0336570:intron | 25.0% |
| ! | TACACAGTTATATATAATGC+AGG | - | chr2_4:55998602-55998621 | None:intergenic | 25.0% |
| ! | TTATTCAAAACTTGACTACT+TGG | + | chr2_4:55999086-55999105 | Msa0336570:intron | 25.0% |
| ! | TATTCAAAACTTGACTACTT+GGG | + | chr2_4:55999087-55999106 | Msa0336570:intron | 25.0% |
| ! | TGAAAACCAAGATATAGAAA+AGG | + | chr2_4:55999164-55999183 | Msa0336570:intron | 25.0% |
| !! | TATAGAAAAGGTTTTGCATT+TGG | + | chr2_4:55999176-55999195 | Msa0336570:intron | 25.0% |
| ! | AGAAAATAAGACATACTTGA+TGG | + | chr2_4:55999272-55999291 | Msa0336570:intron | 25.0% |
| !!! | ATGGAAACTTGTTTTATTGA+AGG | - | chr2_4:55999360-55999379 | None:intergenic | 25.0% |
| ! | TAACAAACTACGCATAAATT+AGG | - | chr2_4:55999571-55999590 | None:intergenic | 25.0% |
| ! | TATCATTTCAGAACAAACTA+TGG | + | chr2_4:55999636-55999655 | Msa0336570:intron | 25.0% |
| !! | ACTTGTTGACATTAATATCT+AGG | + | chr2_4:55999760-55999779 | Msa0336570:intron | 25.0% |
| !! | AATATAGTGGAAATTCAGAA+TGG | - | chr2_4:55999898-55999917 | None:intergenic | 25.0% |
| ! | TTCTAACCTGTTAAAGTTTA+GGG | - | chr2_4:55999976-55999995 | None:intergenic | 25.0% |
| ! | ATTCTAACCTGTTAAAGTTT+AGG | - | chr2_4:55999977-55999996 | None:intergenic | 25.0% |
| ! | AAATTCATCAAATGCTGCTT+GGG | + | chr2_4:55996157-55996176 | Msa0336570:CDS | 30.0% |
| ! | ATAGGAGAATTTTCAATCCA+AGG | - | chr2_4:55996326-55996345 | None:intergenic | 30.0% |
| TAGAACGAAATCAAAACCTT+CGG | - | chr2_4:55996422-55996441 | None:intergenic | 30.0% | |
| TGAATATGTTTGCAAGTACA+TGG | - | chr2_4:55996728-55996747 | None:intergenic | 30.0% | |
| GAATTGGAGATCAATTAAAG+GGG | - | chr2_4:55996895-55996914 | None:intergenic | 30.0% | |
| CGAATTGGAGATCAATTAAA+GGG | - | chr2_4:55996896-55996915 | None:intergenic | 30.0% | |
| TCGAATTGGAGATCAATTAA+AGG | - | chr2_4:55996897-55996916 | None:intergenic | 30.0% | |
| TAGAGACTAATTCTTCGAAT+TGG | - | chr2_4:55996911-55996930 | None:intergenic | 30.0% | |
| TTGTTAGATCCTTAACATCA+TGG | - | chr2_4:55997176-55997195 | None:intergenic | 30.0% | |
| TAAGGATCTAACAATTCATG+AGG | + | chr2_4:55997182-55997201 | Msa0336570:CDS | 30.0% | |
| AAGGATCTAACAATTCATGA+GGG | + | chr2_4:55997183-55997202 | Msa0336570:CDS | 30.0% | |
| GCAGTCAAATATTATTTCGT+CGG | - | chr2_4:55997265-55997284 | None:intergenic | 30.0% | |
| ! | TGTATGATTTTTCCATCATC+AGG | + | chr2_4:55997645-55997664 | Msa0336570:CDS | 30.0% |
| ! | GTATGATTTTTCCATCATCA+GGG | + | chr2_4:55997646-55997665 | Msa0336570:CDS | 30.0% |
| ! | TATGATTTTTCCATCATCAG+GGG | + | chr2_4:55997647-55997666 | Msa0336570:CDS | 30.0% |
| ! | TTTCTCTTGGTATCTCATTT+TGG | - | chr2_4:55997934-55997953 | None:intergenic | 30.0% |
| !! | TTCGAGTTTTCTTTTTCTCT+TGG | - | chr2_4:55997947-55997966 | None:intergenic | 30.0% |
| AATTTCGACAACAATTTGGA+TGG | + | chr2_4:55998030-55998049 | Msa0336570:intron | 30.0% | |
| GGCTAATTATGTTTAGTAGA+TGG | - | chr2_4:55998133-55998152 | None:intergenic | 30.0% | |
| ! | GTTTTGCTTATAATAGTGAC+CGG | + | chr2_4:55998359-55998378 | Msa0336570:intron | 30.0% |
| ! | TTAGAGTGCTAACACTTATT+TGG | + | chr2_4:55998674-55998693 | Msa0336570:intron | 30.0% |
| !! | AAAGGTAGATTTGTTAAAGC+AGG | + | chr2_4:55998858-55998877 | Msa0336570:CDS | 30.0% |
| ! | AATCACAAAATTTTCCTTGC+AGG | + | chr2_4:55998932-55998951 | Msa0336570:three_prime_UTR | 30.0% |
| CAGAACAATGTATTCACAAA+GGG | - | chr2_4:55998990-55999009 | None:intergenic | 30.0% | |
| ACAGAACAATGTATTCACAA+AGG | - | chr2_4:55998991-55999010 | None:intergenic | 30.0% | |
| ! | GACATGTTAAAGCATTCAAT+AGG | + | chr2_4:55999121-55999140 | Msa0336570:intron | 30.0% |
| ! | GCAAAACCTTTTCTATATCT+TGG | - | chr2_4:55999173-55999192 | None:intergenic | 30.0% |
| TTAGCTGTAGTGTATATAGA+TGG | - | chr2_4:55999379-55999398 | None:intergenic | 30.0% | |
| TTAACTGAAAAGAAAGGGTA+TGG | + | chr2_4:55999474-55999493 | Msa0336570:intron | 30.0% | |
| TACGCATAAATTAGGAATAG+TGG | - | chr2_4:55999563-55999582 | None:intergenic | 30.0% | |
| ATTTCAGAACAAACTATGGA+GGG | + | chr2_4:55999640-55999659 | Msa0336570:intron | 30.0% | |
| AATGTCAACAAGTATAGCTA+TGG | - | chr2_4:55999753-55999772 | None:intergenic | 30.0% | |
| ATGGCAAACAAATCAGAATT+TGG | - | chr2_4:55999808-55999827 | None:intergenic | 30.0% | |
| TAGGTCTGCAAATAATATAG+TGG | - | chr2_4:55999911-55999930 | None:intergenic | 30.0% | |
| CAAATAAACACAGGCTAATA+AGG | + | chr2_4:56000023-56000042 | Msa0336570:three_prime_UTR | 30.0% | |
| CAGGCTAATAAGGAAAAAAA+AGG | + | chr2_4:56000033-56000052 | Msa0336570:three_prime_UTR | 30.0% | |
| TTCTTAGGAATGACAAAATG+AGG | - | chr2_4:56000082-56000101 | None:intergenic | 30.0% | |
| ACTAAGGTTTATCACTTCTT+AGG | - | chr2_4:56000097-56000116 | None:intergenic | 30.0% | |
| AAGAATAGCAAACCTTATTC+CGG | + | chr2_4:56000157-56000176 | Msa0336570:three_prime_UTR | 30.0% | |
| !! | AAGCTCTATGTGAGTTTTGT+GGG | + | chr2_4:55995832-55995851 | Msa0336570:CDS | 35.0% |
| TTAGATAAGTCTGCCAAAGA+GGG | - | chr2_4:55996113-55996132 | None:intergenic | 35.0% | |
| ! | TGGCAGACTTATCTAAGATT+TGG | + | chr2_4:55996117-55996136 | Msa0336570:CDS | 35.0% |
| ! | ATCTAAGATTTGGCCACATT+TGG | + | chr2_4:55996127-55996146 | Msa0336570:CDS | 35.0% |
| GAATTTGCATCAACCAAATG+TGG | - | chr2_4:55996143-55996162 | None:intergenic | 35.0% | |
| CAAATTCATCAAATGCTGCT+TGG | + | chr2_4:55996156-55996175 | Msa0336570:CDS | 35.0% | |
| CAAGGTTCATATTTGACACA+TGG | - | chr2_4:55996308-55996327 | None:intergenic | 35.0% | |
| CATGTGTCAAATATGAACCT+TGG | + | chr2_4:55996306-55996325 | Msa0336570:CDS | 35.0% | |
| TGTGTGCAGTTTGAATTTGA+TGG | - | chr2_4:55996353-55996372 | None:intergenic | 35.0% | |
| GTCTTGTGAATGGAAATCAT+AGG | - | chr2_4:55996566-55996585 | None:intergenic | 35.0% | |
| TAAGATAGCACACCAATGAT+TGG | + | chr2_4:55996652-55996671 | Msa0336570:intron | 35.0% | |
| !! | AATGAGTGAGAGTATTAGTG+TGG | - | chr2_4:55996762-55996781 | None:intergenic | 35.0% |
| CTCTCACTCATTTACCAATA+TGG | + | chr2_4:55996770-55996789 | Msa0336570:intron | 35.0% | |
| AGGATCTAACAATTCATGAG+GGG | + | chr2_4:55997184-55997203 | Msa0336570:CDS | 35.0% | |
| ATTGAAACCTTCACATAGAC+CGG | - | chr2_4:55997211-55997230 | None:intergenic | 35.0% | |
| TCTATGTGAAGGTTTCAATG+TGG | + | chr2_4:55997212-55997231 | Msa0336570:CDS | 35.0% | |
| ! | TCTAAAGTCACGCATATGAT+TGG | - | chr2_4:55997483-55997502 | None:intergenic | 35.0% |
| TGGATCAACAAATTTGATGC+AGG | + | chr2_4:55997674-55997693 | Msa0336570:CDS | 35.0% | |
| GGATCAACAAATTTGATGCA+GGG | + | chr2_4:55997675-55997694 | Msa0336570:CDS | 35.0% | |
| CTGCTTTCACCATTTATGTT+AGG | - | chr2_4:55997807-55997826 | None:intergenic | 35.0% | |
| TAACGCACAATCTAGAAGTT+CGG | - | chr2_4:55997835-55997854 | None:intergenic | 35.0% | |
| ATCGCATTGGGAATCAAATT+TGG | + | chr2_4:55997878-55997897 | Msa0336570:CDS | 35.0% | |
| CATTGGGAATCAAATTTGGA+GGG | + | chr2_4:55997882-55997901 | Msa0336570:CDS | 35.0% | |
| GTTAATGACGTTCAAAGTTG+TGG | - | chr2_4:55998154-55998173 | None:intergenic | 35.0% | |
| GTGTTCAAATATACATCCTC+CGG | + | chr2_4:55998228-55998247 | Msa0336570:intron | 35.0% | |
| !! | TTGACTTGGTACAACAAATC+AGG | + | chr2_4:55998775-55998794 | Msa0336570:intron | 35.0% |
| TTGGTACAACAAATCAGGTT+TGG | + | chr2_4:55998780-55998799 | Msa0336570:intron | 35.0% | |
| TGATTGCAGATAACGTTTAG+TGG | - | chr2_4:55998917-55998936 | None:intergenic | 35.0% | |
| AGATTCTGATTGGTAAGCTT+AGG | + | chr2_4:55998960-55998979 | Msa0336570:intron | 35.0% | |
| ATCGCATAATAACAGATTGC+TGG | + | chr2_4:55999201-55999220 | Msa0336570:intron | 35.0% | |
| ! | TTTCTGCTAATATTTGGGAC+TGG | - | chr2_4:55999257-55999276 | None:intergenic | 35.0% |
| ! | GAGAATAATAGCACTGAGTA+AGG | - | chr2_4:55999331-55999350 | None:intergenic | 35.0% |
| !! | GAAAAGAAAGGGTATGGTTT+TGG | + | chr2_4:55999480-55999499 | Msa0336570:intron | 35.0% |
| CATTTCAGAACAAACTATGG+AGG | + | chr2_4:55999639-55999658 | Msa0336570:intron | 35.0% | |
| TAACCTGTTAAAGTTTAGGG+CGG | - | chr2_4:55999973-55999992 | None:intergenic | 35.0% | |
| TGTGTGTCTCAAATAAACAC+AGG | + | chr2_4:56000014-56000033 | Msa0336570:three_prime_UTR | 35.0% | |
| TAAGGAAAAAAAAGGAGAGC+TGG | + | chr2_4:56000041-56000060 | Msa0336570:three_prime_UTR | 35.0% | |
| ACAATATCTTGAGATGGAGA+AGG | - | chr2_4:56000135-56000154 | None:intergenic | 35.0% | |
| TCTTGGACAATATCTTGAGA+TGG | - | chr2_4:56000141-56000160 | None:intergenic | 35.0% | |
| !! | GGAATAAGGTTTGCTATTCT+TGG | - | chr2_4:56000158-56000177 | None:intergenic | 35.0% |
| ATGCTAACTAATCCGGAATA+AGG | - | chr2_4:56000172-56000191 | None:intergenic | 35.0% | |
| GTTGACAATGCTAACTAATC+CGG | - | chr2_4:56000179-56000198 | None:intergenic | 35.0% | |
| ! | GAAGCTCTATGTGAGTTTTG+TGG | + | chr2_4:55995831-55995850 | Msa0336570:CDS | 40.0% |
| !! | AGCTCTATGTGAGTTTTGTG+GGG | + | chr2_4:55995833-55995852 | Msa0336570:CDS | 40.0% |
| GTCTTTGCTTGCATTGTGAT+GGG | + | chr2_4:55995895-55995914 | Msa0336570:CDS | 40.0% | |
| CGAAATTACACTTATCGCAG+AGG | - | chr2_4:55995968-55995987 | None:intergenic | 40.0% | |
| ACAATTTATGATCGACGCAG+CGG | - | chr2_4:55996004-55996023 | None:intergenic | 40.0% | |
| CTCTCTGTCAAGTTTGTGAT+TGG | + | chr2_4:55996024-55996043 | Msa0336570:CDS | 40.0% | |
| CTTAGATAAGTCTGCCAAAG+AGG | - | chr2_4:55996114-55996133 | None:intergenic | 40.0% | |
| ! | TTAGGCAAAGCACTAGTACT+AGG | - | chr2_4:55996188-55996207 | None:intergenic | 40.0% |
| !!! | CGGTCACTGATTTCAGTTTT+AGG | - | chr2_4:55996206-55996225 | None:intergenic | 40.0% |
| ! | TCTGCTCCAAATGTTGATTG+CGG | - | chr2_4:55996229-55996248 | None:intergenic | 40.0% |
| ! | ACCAACGAAGCCATTCTTTT+CGG | - | chr2_4:55996255-55996274 | None:intergenic | 40.0% |
| ! | AAAGAATGGCTTCGTTGGTT+TGG | + | chr2_4:55996256-55996275 | Msa0336570:CDS | 40.0% |
| ACGAAATCAAAACCTTCGGT+TGG | - | chr2_4:55996418-55996437 | None:intergenic | 40.0% | |
| AATGGAAATCATAGGCACAC+TGG | - | chr2_4:55996558-55996577 | None:intergenic | 40.0% | |
| ! | TCATGTTCGAGTCTTGTGAA+TGG | - | chr2_4:55996576-55996595 | None:intergenic | 40.0% |
| AAAACTTATGTGGGTCGAAG+AGG | - | chr2_4:55996627-55996646 | None:intergenic | 40.0% | |
| CCAACTTTGTCACACCATAT+TGG | - | chr2_4:55996787-55996806 | None:intergenic | 40.0% | |
| CCAATATGGTGTGACAAAGT+TGG | + | chr2_4:55996784-55996803 | Msa0336570:intron | 40.0% | |
| AACTGAGTTCCTTAAGCATG+CGG | + | chr2_4:55996812-55996831 | Msa0336570:intron | 40.0% | |
| AATTCATGACCGCATGCTTA+AGG | - | chr2_4:55996824-55996843 | None:intergenic | 40.0% | |
| TCAAGGATGCCATGATGTTA+AGG | + | chr2_4:55997164-55997183 | Msa0336570:CDS | 40.0% | |
| GGATCTAACAATTCATGAGG+GGG | + | chr2_4:55997185-55997204 | Msa0336570:CDS | 40.0% | |
| ACTGCCACAAAATACAACCA+CGG | + | chr2_4:55997291-55997310 | Msa0336570:CDS | 40.0% | |
| ! | ATCTCCGTGGTTGTATTTTG+TGG | - | chr2_4:55997298-55997317 | None:intergenic | 40.0% |
| ACAAAATACAACCACGGAGA+TGG | + | chr2_4:55997297-55997316 | Msa0336570:CDS | 40.0% | |
| ! | TGACTGCTACATTTTGTGAC+TGG | - | chr2_4:55997357-55997376 | None:intergenic | 40.0% |
| GCATTGGGAATCAAATTTGG+AGG | + | chr2_4:55997881-55997900 | Msa0336570:CDS | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr2_4:55998362-55998381 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr2_4:55998362-55998381 | Msa0336570:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr2_4:55998363-55998382 | Msa0336570:intron | 40.0% | |
| TGAATATCATGTACACCCTC+CGG | - | chr2_4:55998381-55998400 | None:intergenic | 40.0% | |
| !! | CCATGAATGTCGACTTAAAC+AGG | - | chr2_4:55998509-55998528 | None:intergenic | 40.0% |
| CCTGTTTAAGTCGACATTCA+TGG | + | chr2_4:55998506-55998525 | Msa0336570:intron | 40.0% | |
| GATACAAGAAAACGCGTGAA+AGG | + | chr2_4:55998840-55998859 | Msa0336570:CDS | 40.0% | |
| TCAGAATCTCATATCCTGCA+AGG | - | chr2_4:55998949-55998968 | None:intergenic | 40.0% | |
| GCAGGATATGAGATTCTGAT+TGG | + | chr2_4:55998950-55998969 | Msa0336570:three_prime_UTR | 40.0% | |
| TCAAAACTTGACTACTTGGG+TGG | + | chr2_4:55999090-55999109 | Msa0336570:intron | 40.0% | |
| !!! | GAAAGGGTATGGTTTTGGAT+AGG | + | chr2_4:55999485-55999504 | Msa0336570:intron | 40.0% |
| GTCAACAAGTATAGCTATGG+TGG | - | chr2_4:55999750-55999769 | None:intergenic | 40.0% | |
| GTTAGAAAAGCGGAAGCAAA+TGG | - | chr2_4:55999827-55999846 | None:intergenic | 40.0% | |
| ! | GCAAGCTAGAAAGAGTATGT+AGG | - | chr2_4:55999930-55999949 | None:intergenic | 40.0% |
| !! | ATACTCTTTCTAGCTTGCAG+AGG | + | chr2_4:55999932-55999951 | Msa0336570:three_prime_UTR | 40.0% |
| !! | TACTCTTTCTAGCTTGCAGA+GGG | + | chr2_4:55999933-55999952 | Msa0336570:three_prime_UTR | 40.0% |
| GTAGTGTTTGTGAAGGACTA+AGG | - | chr2_4:56000113-56000132 | None:intergenic | 40.0% | |
| TTAGTTAGCATTGTCAACCG+TGG | + | chr2_4:56000181-56000200 | Msa0336570:three_prime_UTR | 40.0% | |
| AGAACATGTATCGCAATCCA+CGG | - | chr2_4:56000201-56000220 | None:intergenic | 40.0% | |
| !! | GATACATGTTCTTGACTTGC+TGG | + | chr2_4:56000209-56000228 | Msa0336570:three_prime_UTR | 40.0% |
| ACAATGCAAGCAAAGACGAG+CGG | - | chr2_4:55995892-55995911 | None:intergenic | 45.0% | |
| CGTCTTTGCTTGCATTGTGA+TGG | + | chr2_4:55995894-55995913 | Msa0336570:CDS | 45.0% | |
| GAGACAGAGAATTTGCAGAG+TGG | - | chr2_4:55995926-55995945 | None:intergenic | 45.0% | |
| ! | GTGCTACTCACTTTCTACAC+TGG | + | chr2_4:55996083-55996102 | Msa0336570:CDS | 45.0% |
| GAGCAGAAACCCGAAAAGAA+TGG | + | chr2_4:55996242-55996261 | Msa0336570:CDS | 45.0% | |
| ! | CCAACGAAGCCATTCTTTTC+GGG | - | chr2_4:55996254-55996273 | None:intergenic | 45.0% |
| ! | TGGTTTGGCGAATGACAAGT+TGG | + | chr2_4:55996271-55996290 | Msa0336570:CDS | 45.0% |
| GGTTTGGCGAATGACAAGTT+GGG | + | chr2_4:55996272-55996291 | Msa0336570:CDS | 45.0% | |
| TCAAGACTCAAACCAACCGA+AGG | + | chr2_4:55996403-55996422 | Msa0336570:CDS | 45.0% | |
| AGGTGCTCTTCCATACACAT+CGG | - | chr2_4:55996857-55996876 | None:intergenic | 45.0% | |
| AAATACAACCACGGAGATGG+AGG | + | chr2_4:55997300-55997319 | Msa0336570:CDS | 45.0% | |
| ATTCTATTCCTCCATCTCCG+TGG | - | chr2_4:55997311-55997330 | None:intergenic | 45.0% | |
| TAGCAGTCACATTGAGACTG+CGG | + | chr2_4:55997368-55997387 | Msa0336570:CDS | 45.0% | |
| ! | ATTTTTCCATCATCAGGGGC+TGG | + | chr2_4:55997651-55997670 | Msa0336570:CDS | 45.0% |
| ! | TTGATGCAGGGCATCAACAA+TGG | + | chr2_4:55997687-55997706 | Msa0336570:CDS | 45.0% |
| CCTGAATGAGTTTGACTCTG+AGG | - | chr2_4:55997768-55997787 | None:intergenic | 45.0% | |
| CCTCAGAGTCAAACTCATTC+AGG | + | chr2_4:55997765-55997784 | Msa0336570:CDS | 45.0% | |
| TTACCTCCAGTGTTTCATCC+TGG | + | chr2_4:55997852-55997871 | Msa0336570:CDS | 45.0% | |
| GATTCACCAGGATGAAACAC+TGG | - | chr2_4:55997861-55997880 | None:intergenic | 45.0% | |
| TTCATCCTGGTGAATCGCAT+TGG | + | chr2_4:55997865-55997884 | Msa0336570:CDS | 45.0% | |
| TCATCCTGGTGAATCGCATT+GGG | + | chr2_4:55997866-55997885 | Msa0336570:CDS | 45.0% | |
| !! | TTGGCTTTATCCCTTGCTTG+AGG | - | chr2_4:55997915-55997934 | None:intergenic | 45.0% |
| CGACATTCATGGACAATCAC+AGG | + | chr2_4:55998517-55998536 | Msa0336570:intron | 45.0% | |
| ATATGCGTCTCGCAAAGCAA+GGG | + | chr2_4:55998815-55998834 | Msa0336570:CDS | 45.0% | |
| GTTTAGTGGTCGCTCAAAAG+AGG | - | chr2_4:55998903-55998922 | None:intergenic | 45.0% | |
| AACTTGACTACTTGGGTGGT+TGG | + | chr2_4:55999094-55999113 | Msa0336570:intron | 45.0% | |
| !! | ACTCTTTCTAGCTTGCAGAG+GGG | + | chr2_4:55999934-55999953 | Msa0336570:three_prime_UTR | 45.0% |
| GATCCGCCCTAAACTTTAAC+AGG | + | chr2_4:55999967-55999986 | Msa0336570:three_prime_UTR | 45.0% | |
| GGAGAAGGTAGTGTTTGTGA+AGG | - | chr2_4:56000120-56000139 | None:intergenic | 45.0% | |
| AAGATGCATACAGTTGCTGC+AGG | - | chr2_4:56000248-56000267 | None:intergenic | 45.0% | |
| AAGCAAAGACGAGCGGAATC+AGG | - | chr2_4:55995885-55995904 | None:intergenic | 50.0% | |
| CTGCAAATTCTCTGTCTCGC+AGG | + | chr2_4:55995928-55995947 | Msa0336570:CDS | 50.0% | |
| ! | CTACACTGGTTGTCCCTCTT+TGG | + | chr2_4:55996097-55996116 | Msa0336570:CDS | 50.0% |
| TGACCGCCGCAATCAACATT+TGG | + | chr2_4:55996220-55996239 | Msa0336570:CDS | 50.0% | |
| ! | GCTCCAAATGTTGATTGCGG+CGG | - | chr2_4:55996226-55996245 | None:intergenic | 50.0% |
| CCCGAAAAGAATGGCTTCGT+TGG | + | chr2_4:55996251-55996270 | Msa0336570:CDS | 50.0% | |
| CGATTCCTGACCGATGTGTA+TGG | + | chr2_4:55996844-55996863 | Msa0336570:intron | 50.0% | |
| CTCTTCCATACACATCGGTC+AGG | - | chr2_4:55996852-55996871 | None:intergenic | 50.0% | |
| CTAACAATTCATGAGGGGGC+CGG | + | chr2_4:55997189-55997208 | Msa0336570:CDS | 50.0% | |
| TCACATTGAGACTGCGGTAG+AGG | + | chr2_4:55997374-55997393 | Msa0336570:CDS | 50.0% | |
| GGCATGCTTCTGTTGCAACT+AGG | - | chr2_4:55997735-55997754 | None:intergenic | 50.0% | |
| ! | TGCAACAGAAGCATGCCTCT+AGG | + | chr2_4:55997738-55997757 | Msa0336570:CDS | 50.0% |
| ! | GCAACAGAAGCATGCCTCTA+GGG | + | chr2_4:55997739-55997758 | Msa0336570:CDS | 50.0% |
| ! | TGACTCTGAGGAAACCCTAG+AGG | - | chr2_4:55997756-55997775 | None:intergenic | 50.0% |
| TCACCAGGATGAAACACTGG+AGG | - | chr2_4:55997858-55997877 | None:intergenic | 50.0% | |
| GATTCCCAATGCGATTCACC+AGG | - | chr2_4:55997873-55997892 | None:intergenic | 50.0% | |
| GATATGCGTCTCGCAAAGCA+AGG | + | chr2_4:55998814-55998833 | Msa0336570:CDS | 50.0% | |
| ATGCATACAGTTGCTGCAGG+TGG | - | chr2_4:56000245-56000264 | None:intergenic | 50.0% | |
| TTGTGGGGTTGCAAGAGCTG+TGG | + | chr2_4:55995848-55995867 | Msa0336570:CDS | 55.0% | |
| ACTTATCGCAGAGGAGCGAG+CGG | - | chr2_4:55995959-55995978 | None:intergenic | 55.0% | |
| ! | GCGAATGACAAGTTGGGCGA+AGG | + | chr2_4:55996278-55996297 | Msa0336570:CDS | 55.0% |
| ACCCTCGTTACTATCCGAGC+TGG | + | chr2_4:55996503-55996522 | Msa0336570:intron | 55.0% | |
| CCCAGCTCGGATAGTAACGA+GGG | - | chr2_4:55996507-55996526 | None:intergenic | 55.0% | |
| CCCTCGTTACTATCCGAGCT+GGG | + | chr2_4:55996504-55996523 | Msa0336570:intron | 55.0% | |
| ACCCAGCTCGGATAGTAACG+AGG | - | chr2_4:55996508-55996527 | None:intergenic | 55.0% | |
| TCGTTACTATCCGAGCTGGG+TGG | + | chr2_4:55996507-55996526 | Msa0336570:intron | 55.0% | |
| TTATGTGCGTCCACCCAGCT+CGG | - | chr2_4:55996520-55996539 | None:intergenic | 55.0% | |
| GGTCGAAGAGGCAATGAGCA+TGG | - | chr2_4:55996615-55996634 | None:intergenic | 55.0% | |
| !! | GGAAGAGCACCTGTTGTGAG+AGG | + | chr2_4:55996865-55996884 | Msa0336570:intron | 55.0% |
| GAGACTGCGGTAGAGGTTAC+CGG | + | chr2_4:55997381-55997400 | Msa0336570:intron | 55.0% | |
| TTTCCATCATCAGGGGCTGG+TGG | + | chr2_4:55997654-55997673 | Msa0336570:CDS | 55.0% | |
| ! | AGGGTGCTTGTCCTCAAGCA+AGG | + | chr2_4:55997901-55997920 | Msa0336570:CDS | 55.0% |
| GGGTGCTTGTCCTCAAGCAA+GGG | + | chr2_4:55997902-55997921 | Msa0336570:CDS | 55.0% | |
| TTATCGCAGAGGAGCGAGCG+GGG | - | chr2_4:55995957-55995976 | None:intergenic | 60.0% | |
| CTTATCGCAGAGGAGCGAGC+GGG | - | chr2_4:55995958-55995977 | None:intergenic | 60.0% | |
| GAGCTGGGTGGACGCACATA+AGG | + | chr2_4:55996519-55996538 | Msa0336570:intron | 60.0% | |
| CTGGGTGGACGCACATAAGG+CGG | + | chr2_4:55996522-55996541 | Msa0336570:intron | 60.0% | |
| AGGGGCTGACCTCTCACAAC+AGG | - | chr2_4:55996877-55996896 | None:intergenic | 60.0% | |
| GATCCACCAGCCCCTGATGA+TGG | - | chr2_4:55997660-55997679 | None:intergenic | 60.0% | |
| AGCTTGCAGAGGGGAGTCGA+TGG | + | chr2_4:55999943-55999962 | Msa0336570:three_prime_UTR | 60.0% | |
| CAGTTGCTGCAGGTGGACAG+TGG | - | chr2_4:56000238-56000257 | None:intergenic | 60.0% | |
| GAGGGGGCCGGTCTATGTGA+AGG | + | chr2_4:55997201-55997220 | Msa0336570:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 55995828 | 56000348 | 55995828 | ID=Msa0336570;Name=Msa0336570 |
| chr2_4 | mRNA | 55995828 | 56000348 | 55995828 | ID=Msa0336570-mRNA-1;Parent=Msa0336570;Name=Msa0336570-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.5|0.6|1|0.75|0.8|5|474|433 |
| chr2_4 | exon | 55995828 | 55996424 | 55995828 | ID=Msa0336570-mRNA-1:exon:17070;Parent=Msa0336570-mRNA-1 |
| chr2_4 | exon | 55997162 | 55997395 | 55997162 | ID=Msa0336570-mRNA-1:exon:17071;Parent=Msa0336570-mRNA-1 |
| chr2_4 | exon | 55997621 | 55997967 | 55997621 | ID=Msa0336570-mRNA-1:exon:17072;Parent=Msa0336570-mRNA-1 |
| chr2_4 | exon | 55998797 | 55998971 | 55998797 | ID=Msa0336570-mRNA-1:exon:17073;Parent=Msa0336570-mRNA-1 |
| chr2_4 | exon | 55999926 | 56000348 | 55999926 | ID=Msa0336570-mRNA-1:exon:17074;Parent=Msa0336570-mRNA-1 |
| chr2_4 | CDS | 55995828 | 55996424 | 55995828 | ID=Msa0336570-mRNA-1:cds;Parent=Msa0336570-mRNA-1 |
| chr2_4 | CDS | 55997162 | 55997395 | 55997162 | ID=Msa0336570-mRNA-1:cds;Parent=Msa0336570-mRNA-1 |
| chr2_4 | CDS | 55997621 | 55997967 | 55997621 | ID=Msa0336570-mRNA-1:cds;Parent=Msa0336570-mRNA-1 |
| chr2_4 | CDS | 55998797 | 55998920 | 55998797 | ID=Msa0336570-mRNA-1:cds;Parent=Msa0336570-mRNA-1 |
| chr2_4 | three_prime_UTR | 55998921 | 55998971 | 55998921 | ID=Msa0336570-mRNA-1:three_prime_utr;Parent=Msa0336570-mRNA-1 |
| chr2_4 | three_prime_UTR | 55999926 | 56000348 | 55999926 | ID=Msa0336570-mRNA-1:three_prime_utr;Parent=Msa0336570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
