Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622820 | XP_039686690.1 | 94.226 | 433 | 25 | 0 | 1 | 433 | 1 | 433 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622820 | sp|Q9LJ44|COL12_ARATH | 38.283 | 431 | 189 | 13 | 1 | 428 | 1 | 357 | 8.45e-81 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0622820 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0622820 | Msa1377280 | 0.926142 | 7.033753e-91 | -8.615850e-47 |
| Msa0336570 | Msa0622820 | 0.951112 | 4.053819e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622820 | MtrunA17_Chr2g0322941 | 93.500 | 200 | 13 | 0 | 1 | 200 | 40 | 239 | 4.27e-138 | 395 |
| Msa0622820 | MtrunA17_Chr2g0322951 | 95.238 | 147 | 7 | 0 | 287 | 433 | 1 | 147 | 1.29e-100 | 296 |
| Msa0622820 | MtrunA17_Chr5g0429341 | 34.240 | 441 | 241 | 13 | 1 | 429 | 1 | 404 | 2.11e-58 | 196 |
| Msa0622820 | MtrunA17_Chr3g0120711 | 33.333 | 447 | 238 | 14 | 1 | 429 | 1 | 405 | 5.86e-57 | 193 |
| Msa0622820 | MtrunA17_Chr1g0209071 | 44.231 | 104 | 57 | 1 | 1 | 104 | 1 | 103 | 3.74e-22 | 97.1 |
| Msa0622820 | MtrunA17_Chr7g0268691 | 44.000 | 100 | 55 | 1 | 5 | 103 | 20 | 119 | 3.39e-20 | 91.7 |
| Msa0622820 | MtrunA17_Chr7g0251781 | 40.741 | 108 | 56 | 1 | 1 | 100 | 1 | 108 | 3.40e-18 | 85.9 |
| Msa0622820 | MtrunA17_Chr7g0251781 | 26.716 | 408 | 245 | 16 | 45 | 422 | 2 | 385 | 6.12e-15 | 76.3 |
| Msa0622820 | MtrunA17_Chr3g0136701 | 45.122 | 82 | 45 | 0 | 4 | 85 | 5 | 86 | 5.60e-14 | 72.0 |
| Msa0622820 | MtrunA17_Chr4g0072871 | 39.024 | 82 | 50 | 0 | 4 | 85 | 21 | 102 | 1.62e-12 | 68.6 |
| Msa0622820 | MtrunA17_Chr1g0150471 | 39.024 | 82 | 50 | 0 | 4 | 85 | 5 | 86 | 4.16e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622820 | AT3G21880.3 | 38.283 | 431 | 189 | 13 | 1 | 428 | 5 | 361 | 6.93e-82 | 256 |
| Msa0622820 | AT3G21880.2 | 38.283 | 431 | 189 | 13 | 1 | 428 | 5 | 361 | 6.93e-82 | 256 |
| Msa0622820 | AT3G21880.1 | 38.283 | 431 | 189 | 13 | 1 | 428 | 1 | 357 | 8.59e-82 | 256 |
| Msa0622820 | AT4G15250.1 | 36.175 | 434 | 167 | 11 | 1 | 430 | 1 | 328 | 8.11e-68 | 219 |
| Msa0622820 | AT5G48250.1 | 32.438 | 447 | 204 | 13 | 1 | 429 | 1 | 367 | 6.65e-56 | 189 |
| Msa0622820 | AT3G07650.3 | 32.892 | 453 | 193 | 15 | 1 | 429 | 1 | 366 | 4.47e-55 | 187 |
| Msa0622820 | AT3G07650.2 | 32.892 | 453 | 193 | 15 | 1 | 429 | 1 | 366 | 4.47e-55 | 187 |
| Msa0622820 | AT3G07650.4 | 32.892 | 453 | 193 | 15 | 1 | 429 | 1 | 366 | 4.47e-55 | 187 |
| Msa0622820 | AT3G07650.1 | 32.892 | 453 | 193 | 15 | 1 | 429 | 1 | 366 | 4.47e-55 | 187 |
| Msa0622820 | AT1G68190.1 | 45.113 | 133 | 65 | 2 | 1 | 129 | 10 | 138 | 1.47e-26 | 110 |
| Msa0622820 | AT1G68190.3 | 45.113 | 133 | 65 | 2 | 1 | 129 | 10 | 138 | 1.47e-26 | 110 |
| Msa0622820 | AT1G68190.2 | 45.113 | 133 | 65 | 2 | 1 | 129 | 39 | 167 | 2.38e-26 | 110 |
| Msa0622820 | AT2G33500.1 | 45.098 | 102 | 54 | 1 | 5 | 104 | 12 | 113 | 2.75e-23 | 101 |
| Msa0622820 | AT2G33500.1 | 71.111 | 45 | 13 | 0 | 376 | 420 | 355 | 399 | 3.39e-12 | 68.2 |
| Msa0622820 | AT2G33500.2 | 45.098 | 102 | 54 | 1 | 5 | 104 | 12 | 113 | 3.08e-23 | 101 |
| Msa0622820 | AT2G33500.2 | 71.111 | 45 | 13 | 0 | 376 | 420 | 354 | 398 | 3.28e-12 | 68.2 |
| Msa0622820 | AT1G28050.1 | 44.118 | 102 | 55 | 1 | 5 | 104 | 9 | 110 | 2.48e-22 | 99.0 |
| Msa0622820 | AT1G28050.1 | 68.750 | 48 | 15 | 0 | 376 | 423 | 383 | 430 | 3.51e-12 | 68.2 |
| Msa0622820 | AT2G47890.2 | 39.552 | 134 | 81 | 0 | 4 | 137 | 12 | 145 | 6.74e-21 | 91.7 |
| Msa0622820 | AT2G47890.3 | 39.552 | 134 | 81 | 0 | 4 | 137 | 12 | 145 | 1.01e-20 | 92.4 |
| Msa0622820 | AT2G47890.1 | 41.803 | 122 | 71 | 0 | 4 | 125 | 12 | 133 | 1.28e-20 | 92.8 |
| Msa0622820 | AT1G05290.1 | 27.316 | 421 | 227 | 14 | 22 | 432 | 10 | 361 | 2.36e-16 | 80.5 |
| Msa0622820 | AT5G24930.1 | 41.463 | 82 | 48 | 0 | 4 | 85 | 5 | 86 | 2.27e-13 | 71.6 |
| Msa0622820 | AT3G02380.1 | 33.333 | 150 | 72 | 4 | 277 | 419 | 191 | 319 | 2.20e-12 | 68.6 |
| Msa0622820 | AT2G24790.1 | 37.805 | 82 | 51 | 0 | 4 | 85 | 7 | 88 | 3.23e-11 | 64.3 |
| Msa0622820 | AT2G24790.2 | 37.805 | 82 | 51 | 0 | 4 | 85 | 7 | 88 | 5.65e-11 | 62.8 |
Find 120 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTTGGTATCTCATTT+TGG | 0.141143 | 4_2:-75559239 | None:intergenic |
| TTCTAACCTGTTAAAGTTTA+GGG | 0.210642 | 4_2:-75561196 | None:intergenic |
| GGAATAAGGTTTGCTATTCT+TGG | 0.220277 | 4_2:-75561378 | None:intergenic |
| ATTCTAACCTGTTAAAGTTT+AGG | 0.222643 | 4_2:-75561197 | None:intergenic |
| ACTAAGGTTTATCACTTCTT+AGG | 0.226490 | 4_2:-75561317 | None:intergenic |
| TTTGAATTTGATGGAATAAT+AGG | 0.232482 | 4_2:-75557652 | None:intergenic |
| CTACACTGGTTGTCCCTCTT+TGG | 0.263095 | 4_2:+75557408 | Msa0622820:CDS |
| ATCGCATTGGGAATCAAATT+TGG | 0.271470 | 4_2:+75559186 | Msa0622820:CDS |
| CAAATAAACACAGGCTAATA+AGG | 0.293076 | 4_2:+75561246 | Msa0622820:three_prime_UTR |
| CTCTCTGTCAAGTTTGTGAT+TGG | 0.298207 | 4_2:+75557335 | Msa0622820:CDS |
| GATCCGCCCTAAACTTTAAC+AGG | 0.308713 | 4_2:+75561190 | Msa0622820:three_prime_UTR |
| TGGCAGACTTATCTAAGATT+TGG | 0.313493 | 4_2:+75557428 | Msa0622820:CDS |
| GGGAATAGAATGTCTATTAA+TGG | 0.315973 | 4_2:+75558631 | Msa0622820:CDS |
| AAAGAATGGCTTCGTTGGTT+TGG | 0.319776 | 4_2:+75557567 | Msa0622820:CDS |
| ATTCAATTACCTAACATAAA+TGG | 0.323167 | 4_2:+75559103 | Msa0622820:CDS |
| CCTCAGAGTCAAACTCATTC+AGG | 0.325054 | 4_2:+75559073 | Msa0622820:CDS |
| ATGCTAACTAATCCGGAATA+AGG | 0.328887 | 4_2:-75561392 | None:intergenic |
| CTGCTTTCACCATTTATGTT+AGG | 0.331564 | 4_2:-75559112 | None:intergenic |
| ATCTAAGATTTGGCCACATT+TGG | 0.339459 | 4_2:+75557438 | Msa0622820:CDS |
| CGTCTTTGCTTGCATTGTGA+TGG | 0.374410 | 4_2:+75557205 | Msa0622820:CDS |
| TGTGTGCAGTTTGAATTTGA+TGG | 0.391221 | 4_2:-75557661 | None:intergenic |
| GTCTTTGCTTGCATTGTGAT+GGG | 0.397890 | 4_2:+75557206 | Msa0622820:CDS |
| TCTTTAACTAATTAGCTTCA+AGG | 0.399809 | 4_2:+75558458 | Msa0622820:intron |
| AAGCAAAGACGAGCGGAATC+AGG | 0.415903 | 4_2:-75557193 | None:intergenic |
| TGATTGCAGATAACGTTTAG+TGG | 0.423984 | 4_2:-75560222 | None:intergenic |
| GATACATGTTCTTGACTTGC+TGG | 0.427788 | 4_2:+75561432 | Msa0622820:three_prime_UTR |
| TCAAGGATGCCATGATGTTA+AGG | 0.427984 | 4_2:+75558475 | Msa0622820:CDS |
| AAATTCATCAAATGCTGCTT+GGG | 0.439410 | 4_2:+75557468 | Msa0622820:CDS |
| CCCGAAAAGAATGGCTTCGT+TGG | 0.443487 | 4_2:+75557562 | Msa0622820:CDS |
| TGACCGCCGCAATCAACATT+TGG | 0.447113 | 4_2:+75557531 | Msa0622820:CDS |
| AAATAATTGAGGAAGTATAA+AGG | 0.451706 | 4_2:-75561497 | None:intergenic |
| TCATCCTGGTGAATCGCATT+GGG | 0.451754 | 4_2:+75559174 | Msa0622820:CDS |
| GTAGTGTTTGTGAAGGACTA+AGG | 0.456130 | 4_2:-75561333 | None:intergenic |
| CAAAATACAACCACGGAGAT+GGG | 0.459929 | 4_2:+75558609 | Msa0622820:CDS |
| AAGAATAGCAAACCTTATTC+CGG | 0.461316 | 4_2:+75561380 | Msa0622820:three_prime_UTR |
| GCAGGATATGAGATTCTGAT+TGG | 0.466120 | 4_2:+75560258 | Msa0622820:three_prime_UTR |
| ACAAAATACAACCACGGAGA+TGG | 0.471009 | 4_2:+75558608 | Msa0622820:CDS |
| CAAATTCATCAAATGCTGCT+TGG | 0.474377 | 4_2:+75557467 | Msa0622820:CDS |
| GTTGACAATGCTAACTAATC+CGG | 0.476297 | 4_2:-75561399 | None:intergenic |
| TTAGGCAAAGCACTAGTACT+AGG | 0.478053 | 4_2:-75557496 | None:intergenic |
| TTCTTAGGAATGACAAAATG+AGG | 0.480078 | 4_2:-75561302 | None:intergenic |
| AAAGGTAGATTTGTTAAAGC+AGG | 0.483112 | 4_2:+75560166 | Msa0622820:CDS |
| TTGTTAGATCCTTAACATCA+TGG | 0.486326 | 4_2:-75558484 | None:intergenic |
| GAGCAGAAACCCGAAAAGAA+TGG | 0.491985 | 4_2:+75557553 | Msa0622820:CDS |
| TCACATTGAGACTGCGGTAG+AGG | 0.492122 | 4_2:+75558685 | Msa0622820:CDS |
| TTTCCATCATCAGGGGCTGG+TGG | 0.497075 | 4_2:+75558962 | Msa0622820:CDS |
| TGGATCAACAAATTTGATGC+AGG | 0.507571 | 4_2:+75558982 | Msa0622820:CDS |
| TTCATCCTGGTGAATCGCAT+TGG | 0.508930 | 4_2:+75559173 | Msa0622820:CDS |
| TACTCTTTCTAGCTTGCAGA+GGG | 0.512252 | 4_2:+75561156 | Msa0622820:three_prime_UTR |
| TTGGCTTTATCCCTTGCTTG+AGG | 0.520712 | 4_2:-75559220 | None:intergenic |
| GATTCCCAATGCGATTCACC+AGG | 0.521167 | 4_2:-75559178 | None:intergenic |
| GCAACAGAAGCATGCCTCTA+GGG | 0.521759 | 4_2:+75559047 | Msa0622820:CDS |
| TAACGCACAATCTAGAAGTT+CGG | 0.523526 | 4_2:-75559140 | None:intergenic |
| GATCCACCAGCCCCTGATGA+TGG | 0.526248 | 4_2:-75558965 | None:intergenic |
| GCAGTCAAATATTATTTCGT+CGG | 0.529373 | 4_2:-75558573 | None:intergenic |
| ACGAAATCAAAACCTTCGGT+TGG | 0.530911 | 4_2:-75557726 | None:intergenic |
| CTGCAAATTCTCTGTCTCGC+AGG | 0.534382 | 4_2:+75557239 | Msa0622820:CDS |
| CTTAGATAAGTCTGCCAAAG+AGG | 0.535601 | 4_2:-75557422 | None:intergenic |
| CATGTGTCAAATATGAACCT+TGG | 0.539470 | 4_2:+75557617 | Msa0622820:CDS |
| AACAGTATATGAAATAATTG+AGG | 0.540401 | 4_2:-75561508 | None:intergenic |
| GCGAATGACAAGTTGGGCGA+AGG | 0.540796 | 4_2:+75557589 | Msa0622820:CDS |
| ATTGAAACCTTCACATAGAC+CGG | 0.543497 | 4_2:-75558519 | None:intergenic |
| TGGTTTGGCGAATGACAAGT+TGG | 0.547865 | 4_2:+75557582 | Msa0622820:CDS |
| TCTTGGACAATATCTTGAGA+TGG | 0.556683 | 4_2:-75561361 | None:intergenic |
| CAAGGTTCATATTTGACACA+TGG | 0.558681 | 4_2:-75557616 | None:intergenic |
| GTTTAGTGGTCGCTCAAAAG+AGG | 0.560107 | 4_2:-75560208 | None:intergenic |
| GGTTTGGCGAATGACAAGTT+GGG | 0.560416 | 4_2:+75557583 | Msa0622820:CDS |
| GCATTGGGAATCAAATTTGG+AGG | 0.563030 | 4_2:+75559189 | Msa0622820:CDS |
| TGCAACAGAAGCATGCCTCT+AGG | 0.563513 | 4_2:+75559046 | Msa0622820:CDS |
| TTACCTCCAGTGTTTCATCC+TGG | 0.565788 | 4_2:+75559160 | Msa0622820:CDS |
| GATACAAGAAAACGCGTGAA+AGG | 0.568988 | 4_2:+75560148 | Msa0622820:CDS |
| AGGGTGCTTGTCCTCAAGCA+AGG | 0.569387 | 4_2:+75559209 | Msa0622820:CDS |
| CTTATCGCAGAGGAGCGAGC+GGG | 0.569512 | 4_2:-75557266 | None:intergenic |
| AAGATGCATACAGTTGCTGC+AGG | 0.570271 | 4_2:-75561468 | None:intergenic |
| GCAAGCTAGAAAGAGTATGT+AGG | 0.571279 | 4_2:-75561150 | None:intergenic |
| GATATGCGTCTCGCAAAGCA+AGG | 0.574066 | 4_2:+75560122 | Msa0622820:CDS |
| CATTGGGAATCAAATTTGGA+GGG | 0.578438 | 4_2:+75559190 | Msa0622820:CDS |
| GTGCTACTCACTTTCTACAC+TGG | 0.583152 | 4_2:+75557394 | Msa0622820:CDS |
| TTAGATAAGTCTGCCAAAGA+GGG | 0.584761 | 4_2:-75557421 | None:intergenic |
| AGCTTGCAGAGGGGAGTCGA+TGG | 0.587290 | 4_2:+75561166 | Msa0622820:three_prime_UTR |
| TCTGCTCCAAATGTTGATTG+CGG | 0.591802 | 4_2:-75557537 | None:intergenic |
| AAAATACAACCACGGAGATG+GGG | 0.594238 | 4_2:+75558610 | Msa0622820:CDS |
| TTGTGGGGTTGCAAGAGCTG+TGG | 0.597112 | 4_2:+75557159 | Msa0622820:CDS |
| GCTCCAAATGTTGATTGCGG+CGG | 0.597124 | 4_2:-75557534 | None:intergenic |
| TCAGAATCTCATATCCTGCA+AGG | 0.600555 | 4_2:-75560254 | None:intergenic |
| ATGCATACAGTTGCTGCAGG+TGG | 0.602236 | 4_2:-75561465 | None:intergenic |
| GGCATGCTTCTGTTGCAACT+AGG | 0.602723 | 4_2:-75559040 | None:intergenic |
| GGATCAACAAATTTGATGCA+GGG | 0.606350 | 4_2:+75558983 | Msa0622820:CDS |
| GGAGAAGGTAGTGTTTGTGA+AGG | 0.606568 | 4_2:-75561340 | None:intergenic |
| AAGGATCTAACAATTCATGA+GGG | 0.609923 | 4_2:+75558494 | Msa0622820:CDS |
| TAAGGATCTAACAATTCATG+AGG | 0.611539 | 4_2:+75558493 | Msa0622820:CDS |
| ATACTCTTTCTAGCTTGCAG+AGG | 0.626699 | 4_2:+75561155 | Msa0622820:three_prime_UTR |
| TCAAGACTCAAACCAACCGA+AGG | 0.626760 | 4_2:+75557714 | Msa0622820:CDS |
| GGGTGCTTGTCCTCAAGCAA+GGG | 0.627728 | 4_2:+75559210 | Msa0622820:CDS |
| CCTGAATGAGTTTGACTCTG+AGG | 0.628593 | 4_2:-75559073 | None:intergenic |
| AAATACAACCACGGAGATGG+GGG | 0.631713 | 4_2:+75558611 | Msa0622820:CDS |
| TTAGTTAGCATTGTCAACCG+TGG | 0.634910 | 4_2:+75561404 | Msa0622820:three_prime_UTR |
| TTGATGCAGGGCATCAACAA+TGG | 0.635140 | 4_2:+75558995 | Msa0622820:CDS |
| CAGTTGCTGCAGGTGGACAG+TGG | 0.635643 | 4_2:-75561458 | None:intergenic |
| ACAATATCTTGAGATGGAGA+AGG | 0.640418 | 4_2:-75561355 | None:intergenic |
| TTATCGCAGAGGAGCGAGCG+GGG | 0.642930 | 4_2:-75557265 | None:intergenic |
| GAATTTGCATCAACCAAATG+TGG | 0.648426 | 4_2:-75557451 | None:intergenic |
| AGAACATGTATCGCAATCCA+CGG | 0.651370 | 4_2:-75561421 | None:intergenic |
| GGATCTAACAATTCATGAGG+GGG | 0.652382 | 4_2:+75558496 | Msa0622820:CDS |
| CGAAATTACACTTATCGCAG+AGG | 0.654750 | 4_2:-75557276 | None:intergenic |
| ATATGCGTCTCGCAAAGCAA+GGG | 0.656822 | 4_2:+75560123 | Msa0622820:CDS |
| TAACCTGTTAAAGTTTAGGG+CGG | 0.663198 | 4_2:-75561193 | None:intergenic |
| ACTTATCGCAGAGGAGCGAG+CGG | 0.664690 | 4_2:-75557267 | None:intergenic |
| ACAATTTATGATCGACGCAG+CGG | 0.677265 | 4_2:-75557312 | None:intergenic |
| AGGATCTAACAATTCATGAG+GGG | 0.678362 | 4_2:+75558495 | Msa0622820:CDS |
| TGTGTGTCTCAAATAAACAC+AGG | 0.679758 | 4_2:+75561237 | Msa0622820:three_prime_UTR |
| TAGCAGTCACATTGAGACTG+CGG | 0.699859 | 4_2:+75558679 | Msa0622820:CDS |
| GATTCACCAGGATGAAACAC+TGG | 0.703479 | 4_2:-75559166 | None:intergenic |
| TGACTCTGAGGAAACCCTAG+AGG | 0.704907 | 4_2:-75559061 | None:intergenic |
| ACAATGCAAGCAAAGACGAG+CGG | 0.710081 | 4_2:-75557200 | None:intergenic |
| TCACCAGGATGAAACACTGG+AGG | 0.717611 | 4_2:-75559163 | None:intergenic |
| ACTGCCACAAAATACAACCA+CGG | 0.722467 | 4_2:+75558602 | Msa0622820:CDS |
| TCTATGTGAAGGTTTCAATG+TGG | 0.759135 | 4_2:+75558523 | Msa0622820:CDS |
| GAGACAGAGAATTTGCAGAG+TGG | 0.767566 | 4_2:-75557234 | None:intergenic |
| ACTCTTTCTAGCTTGCAGAG+GGG | 0.769066 | 4_2:+75561157 | Msa0622820:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTTTTTTAAGTTTTTTTT+AGG | + | chr4_2:75557786-75557805 | Msa0622820:intron | 10.0% |
| !!! | CTAAAAAAATATTTTATAAC+CGG | - | chr4_2:75558714-75558733 | None:intergenic | 10.0% |
| !!! | AATCTTTTTTTATCATTATT+AGG | + | chr4_2:75558907-75558926 | Msa0622820:intron | 10.0% |
| !!! | CTAATCTTTTTTATTTTAGT+TGG | + | chr4_2:75557750-75557769 | Msa0622820:intron | 15.0% |
| !!! | CTTAAATTTAAAACTTATGT+GGG | - | chr4_2:75557947-75557966 | None:intergenic | 15.0% |
| !!! | TCTTAAATTTAAAACTTATG+TGG | - | chr4_2:75557948-75557967 | None:intergenic | 15.0% |
| !!! | TGATATATATTTTGAAATGA+AGG | - | chr4_2:75558014-75558033 | None:intergenic | 15.0% |
| !! | AGTTAAAGAAGAAAAATATT+TGG | - | chr4_2:75558447-75558466 | None:intergenic | 15.0% |
| !!! | CGGTTATAAAATATTTTTTT+AGG | + | chr4_2:75558712-75558731 | Msa0622820:intron | 15.0% |
| !!! | TGATATTTTGATACAAAATT+TGG | + | chr4_2:75559310-75559329 | Msa0622820:intron | 15.0% |
| !!! | TTATTTCTTTCATTAAGAAA+TGG | - | chr4_2:75560325-75560344 | None:intergenic | 15.0% |
| !! | TTATGAATAATCAGAAAAAA+TGG | - | chr4_2:75561542-75561561 | None:intergenic | 15.0% |
| !! | TTTGAATTTGATGGAATAAT+AGG | - | chr4_2:75557655-75557674 | None:intergenic | 20.0% |
| !!! | TGATTAGTTTAGTAGTAATA+TGG | + | chr4_2:75558393-75558412 | Msa0622820:intron | 20.0% |
| !!! | AAAATATTTGGTGTCAATTT+TGG | - | chr4_2:75558435-75558454 | None:intergenic | 20.0% |
| !! | ATAAAAAAAGATTTAGAGAG+AGG | - | chr4_2:75558900-75558919 | None:intergenic | 20.0% |
| !! | ATTCAATTACCTAACATAAA+TGG | + | chr4_2:75559103-75559122 | Msa0622820:CDS | 20.0% |
| !! | AACACAATTTAAATGATTAG+TGG | - | chr4_2:75559521-75559540 | None:intergenic | 20.0% |
| !!! | TAAGCAAAAATCAACATTTT+AGG | + | chr4_2:75559568-75559587 | Msa0622820:intron | 20.0% |
| !! | AACTCTATACATATATACTA+TGG | + | chr4_2:75559731-75559750 | Msa0622820:intron | 20.0% |
| !! | ACATATATACTATGGTAAAA+TGG | + | chr4_2:75559739-75559758 | Msa0622820:intron | 20.0% |
| !!! | CTTAAATTTATAAGTTGACT+TGG | + | chr4_2:75560069-75560088 | Msa0622820:intron | 20.0% |
| !! | TCGTACAAAATTATGAAAAA+TGG | + | chr4_2:75560346-75560365 | Msa0622820:intron | 20.0% |
| !!! | CTTATTTTCTGCTAATATTT+GGG | - | chr4_2:75560570-75560589 | None:intergenic | 20.0% |
| !!! | TCTTATTTTCTGCTAATATT+TGG | - | chr4_2:75560571-75560590 | None:intergenic | 20.0% |
| !!! | TCTTTTCAGTTAATTTTGTA+TGG | - | chr4_2:75560690-75560709 | None:intergenic | 20.0% |
| !! | ACAAAATTAACTGAAAAGAA+AGG | + | chr4_2:75560691-75560710 | Msa0622820:intron | 20.0% |
| !! | CAAAATTAACTGAAAAGAAA+GGG | + | chr4_2:75560692-75560711 | Msa0622820:intron | 20.0% |
| !! | AAAATTAAACAAATCAAACG+CGG | + | chr4_2:75560756-75560775 | Msa0622820:intron | 20.0% |
| !! | AGATAATCTGATATATAAAG+TGG | - | chr4_2:75560900-75560919 | None:intergenic | 20.0% |
| !!! | TATCTTATTTGTTAGAAAAG+CGG | - | chr4_2:75561060-75561079 | None:intergenic | 20.0% |
| !!! | AAATAATTGAGGAAGTATAA+AGG | - | chr4_2:75561500-75561519 | None:intergenic | 20.0% |
| !! | AACAGTATATGAAATAATTG+AGG | - | chr4_2:75561511-75561530 | None:intergenic | 20.0% |
| !! | TACAAATGACTGTTTTGTAT+TGG | + | chr4_2:75557360-75557379 | Msa0622820:CDS | 25.0% |
| !! | ACAAATGACTGTTTTGTATT+GGG | + | chr4_2:75557361-75557380 | Msa0622820:CDS | 25.0% |
| ! | ACTAATTATATGCCAATCAT+TGG | - | chr4_2:75557978-75557997 | None:intergenic | 25.0% |
| !! | TCTTTAACTAATTAGCTTCA+AGG | + | chr4_2:75558458-75558477 | Msa0622820:intron | 25.0% |
| ! | AACAAATTTCGACAACAATT+TGG | + | chr4_2:75559334-75559353 | Msa0622820:intron | 25.0% |
| ! | GATTAATTATGTTCAGTGTA+TGG | + | chr4_2:75559381-75559400 | Msa0622820:intron | 25.0% |
| ! | TGAAAATCTGAAAATCATCA+TGG | - | chr4_2:75559484-75559503 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr4_2:75559558-75559577 | None:intergenic | 25.0% |
| ! | TATACTATGGTAAAATGGAA+CGG | + | chr4_2:75559744-75559763 | Msa0622820:intron | 25.0% |
| ! | TACACAGTTATATATAATGC+AGG | - | chr4_2:75559910-75559929 | None:intergenic | 25.0% |
| ! | TTATTCAAAACTTGACTACT+TGG | + | chr4_2:75560394-75560413 | Msa0622820:intron | 25.0% |
| ! | TATTCAAAACTTGACTACTT+GGG | + | chr4_2:75560395-75560414 | Msa0622820:intron | 25.0% |
| ! | TGAAAACCAAGATATAGAAA+AGG | + | chr4_2:75560472-75560491 | Msa0622820:intron | 25.0% |
| !! | TATAGAAAAGGTTTTGCATT+TGG | + | chr4_2:75560484-75560503 | Msa0622820:intron | 25.0% |
| ! | AGAAAATAAGACATACTTGA+TGG | + | chr4_2:75560580-75560599 | Msa0622820:intron | 25.0% |
| !! | TTTCAGTTAATTTTGTATGG+TGG | - | chr4_2:75560687-75560706 | None:intergenic | 25.0% |
| ! | TAACAAACTACGCATAAATT+AGG | - | chr4_2:75560794-75560813 | None:intergenic | 25.0% |
| ! | TATCATTTCAGAACAAACTA+TGG | + | chr4_2:75560859-75560878 | Msa0622820:intron | 25.0% |
| !! | ACTTGTTGACATTAATATCT+AGG | + | chr4_2:75560983-75561002 | Msa0622820:intron | 25.0% |
| !! | AATATAGTGGAAATTCAGAA+TGG | - | chr4_2:75561121-75561140 | None:intergenic | 25.0% |
| ! | TTCTAACCTGTTAAAGTTTA+GGG | - | chr4_2:75561199-75561218 | None:intergenic | 25.0% |
| ! | ATTCTAACCTGTTAAAGTTT+AGG | - | chr4_2:75561200-75561219 | None:intergenic | 25.0% |
| ! | AAATTCATCAAATGCTGCTT+GGG | + | chr4_2:75557468-75557487 | Msa0622820:CDS | 30.0% |
| ! | ATAGGAGAATTTTCAATCCA+AGG | - | chr4_2:75557637-75557656 | None:intergenic | 30.0% |
| TAGAACGAAATCAAAACCTT+CGG | - | chr4_2:75557733-75557752 | None:intergenic | 30.0% | |
| TGAATATGTTTGCAAGTACA+TGG | - | chr4_2:75558039-75558058 | None:intergenic | 30.0% | |
| GAATTGGAGATCAATTAAAG+GGG | - | chr4_2:75558206-75558225 | None:intergenic | 30.0% | |
| CGAATTGGAGATCAATTAAA+GGG | - | chr4_2:75558207-75558226 | None:intergenic | 30.0% | |
| TCGAATTGGAGATCAATTAA+AGG | - | chr4_2:75558208-75558227 | None:intergenic | 30.0% | |
| TAGAGACTAATTCTTCGAAT+TGG | - | chr4_2:75558222-75558241 | None:intergenic | 30.0% | |
| TTGTTAGATCCTTAACATCA+TGG | - | chr4_2:75558487-75558506 | None:intergenic | 30.0% | |
| TAAGGATCTAACAATTCATG+AGG | + | chr4_2:75558493-75558512 | Msa0622820:CDS | 30.0% | |
| AAGGATCTAACAATTCATGA+GGG | + | chr4_2:75558494-75558513 | Msa0622820:CDS | 30.0% | |
| GCAGTCAAATATTATTTCGT+CGG | - | chr4_2:75558576-75558595 | None:intergenic | 30.0% | |
| GGGAATAGAATGTCTATTAA+TGG | + | chr4_2:75558631-75558650 | Msa0622820:CDS | 30.0% | |
| ! | TGTATGATTTTTCCATCATC+AGG | + | chr4_2:75558953-75558972 | Msa0622820:CDS | 30.0% |
| ! | GTATGATTTTTCCATCATCA+GGG | + | chr4_2:75558954-75558973 | Msa0622820:CDS | 30.0% |
| ! | TATGATTTTTCCATCATCAG+GGG | + | chr4_2:75558955-75558974 | Msa0622820:CDS | 30.0% |
| ! | TTTCTCTTGGTATCTCATTT+TGG | - | chr4_2:75559242-75559261 | None:intergenic | 30.0% |
| !! | TTCGAGTTTTCTTTTTCTCT+TGG | - | chr4_2:75559255-75559274 | None:intergenic | 30.0% |
| AATTTCGACAACAATTTGGA+TGG | + | chr4_2:75559338-75559357 | Msa0622820:intron | 30.0% | |
| GGCTAATTATGTTTAGTAGA+TGG | - | chr4_2:75559441-75559460 | None:intergenic | 30.0% | |
| ! | GTTTTGCTTATAATAGTGAC+CGG | + | chr4_2:75559667-75559686 | Msa0622820:intron | 30.0% |
| ! | TTAGAGTGCTAACACTTATT+TGG | + | chr4_2:75559982-75560001 | Msa0622820:intron | 30.0% |
| !! | AAAGGTAGATTTGTTAAAGC+AGG | + | chr4_2:75560166-75560185 | Msa0622820:CDS | 30.0% |
| ! | AATCACAAAATTTTCCTTGC+AGG | + | chr4_2:75560240-75560259 | Msa0622820:three_prime_UTR | 30.0% |
| CAGAACAATGTATTCACAAA+GGG | - | chr4_2:75560298-75560317 | None:intergenic | 30.0% | |
| ACAGAACAATGTATTCACAA+AGG | - | chr4_2:75560299-75560318 | None:intergenic | 30.0% | |
| ! | GACATGTTAAAGCATTCAAT+AGG | + | chr4_2:75560429-75560448 | Msa0622820:intron | 30.0% |
| ! | GCAAAACCTTTTCTATATCT+TGG | - | chr4_2:75560481-75560500 | None:intergenic | 30.0% |
| !!! | GTGGAAACTTGTTTTATTGA+AGG | - | chr4_2:75560668-75560687 | None:intergenic | 30.0% |
| TTAACTGAAAAGAAAGGGTA+TGG | + | chr4_2:75560697-75560716 | Msa0622820:intron | 30.0% | |
| TACGCATAAATTAGGAATAG+TGG | - | chr4_2:75560786-75560805 | None:intergenic | 30.0% | |
| ATTTCAGAACAAACTATGGA+GGG | + | chr4_2:75560863-75560882 | Msa0622820:intron | 30.0% | |
| AATGTCAACAAGTATAGCTA+TGG | - | chr4_2:75560976-75560995 | None:intergenic | 30.0% | |
| ATGGCAAACAAATCAGAATT+TGG | - | chr4_2:75561031-75561050 | None:intergenic | 30.0% | |
| TAGGTCTGCAAATAATATAG+TGG | - | chr4_2:75561134-75561153 | None:intergenic | 30.0% | |
| CAAATAAACACAGGCTAATA+AGG | + | chr4_2:75561246-75561265 | Msa0622820:three_prime_UTR | 30.0% | |
| CAGGCTAATAAGGAAAAAAA+AGG | + | chr4_2:75561256-75561275 | Msa0622820:three_prime_UTR | 30.0% | |
| TTCTTAGGAATGACAAAATG+AGG | - | chr4_2:75561305-75561324 | None:intergenic | 30.0% | |
| ACTAAGGTTTATCACTTCTT+AGG | - | chr4_2:75561320-75561339 | None:intergenic | 30.0% | |
| AAGAATAGCAAACCTTATTC+CGG | + | chr4_2:75561380-75561399 | Msa0622820:three_prime_UTR | 30.0% | |
| !! | AAGCTCTATGTGAGTTTTGT+GGG | + | chr4_2:75557143-75557162 | Msa0622820:CDS | 35.0% |
| TTAGATAAGTCTGCCAAAGA+GGG | - | chr4_2:75557424-75557443 | None:intergenic | 35.0% | |
| ! | TGGCAGACTTATCTAAGATT+TGG | + | chr4_2:75557428-75557447 | Msa0622820:CDS | 35.0% |
| ! | ATCTAAGATTTGGCCACATT+TGG | + | chr4_2:75557438-75557457 | Msa0622820:CDS | 35.0% |
| GAATTTGCATCAACCAAATG+TGG | - | chr4_2:75557454-75557473 | None:intergenic | 35.0% | |
| CAAATTCATCAAATGCTGCT+TGG | + | chr4_2:75557467-75557486 | Msa0622820:CDS | 35.0% | |
| CAAGGTTCATATTTGACACA+TGG | - | chr4_2:75557619-75557638 | None:intergenic | 35.0% | |
| CATGTGTCAAATATGAACCT+TGG | + | chr4_2:75557617-75557636 | Msa0622820:CDS | 35.0% | |
| TGTGTGCAGTTTGAATTTGA+TGG | - | chr4_2:75557664-75557683 | None:intergenic | 35.0% | |
| GTCTTGTGAATGGAAATCAT+AGG | - | chr4_2:75557877-75557896 | None:intergenic | 35.0% | |
| TAAGATAGCACACCAATGAT+TGG | + | chr4_2:75557963-75557982 | Msa0622820:intron | 35.0% | |
| !! | AATGAGTGAGAGTATTAGTG+TGG | - | chr4_2:75558073-75558092 | None:intergenic | 35.0% |
| CTCTCACTCATTTACCAATA+TGG | + | chr4_2:75558081-75558100 | Msa0622820:intron | 35.0% | |
| AGGATCTAACAATTCATGAG+GGG | + | chr4_2:75558495-75558514 | Msa0622820:CDS | 35.0% | |
| ATTGAAACCTTCACATAGAC+CGG | - | chr4_2:75558522-75558541 | None:intergenic | 35.0% | |
| TCTATGTGAAGGTTTCAATG+TGG | + | chr4_2:75558523-75558542 | Msa0622820:CDS | 35.0% | |
| ACTAAAGTCACGCATATGAT+TGG | - | chr4_2:75558794-75558813 | None:intergenic | 35.0% | |
| TGGATCAACAAATTTGATGC+AGG | + | chr4_2:75558982-75559001 | Msa0622820:CDS | 35.0% | |
| GGATCAACAAATTTGATGCA+GGG | + | chr4_2:75558983-75559002 | Msa0622820:CDS | 35.0% | |
| CTGCTTTCACCATTTATGTT+AGG | - | chr4_2:75559115-75559134 | None:intergenic | 35.0% | |
| TAACGCACAATCTAGAAGTT+CGG | - | chr4_2:75559143-75559162 | None:intergenic | 35.0% | |
| ATCGCATTGGGAATCAAATT+TGG | + | chr4_2:75559186-75559205 | Msa0622820:CDS | 35.0% | |
| CATTGGGAATCAAATTTGGA+GGG | + | chr4_2:75559190-75559209 | Msa0622820:CDS | 35.0% | |
| GTTAATGACGTTCAAAGTTG+TGG | - | chr4_2:75559462-75559481 | None:intergenic | 35.0% | |
| GTGTTCAAATATACATCCTC+CGG | + | chr4_2:75559536-75559555 | Msa0622820:intron | 35.0% | |
| !! | TTGACTTGGTACAACAAATC+AGG | + | chr4_2:75560083-75560102 | Msa0622820:intron | 35.0% |
| TTGGTACAACAAATCAGGTT+TGG | + | chr4_2:75560088-75560107 | Msa0622820:intron | 35.0% | |
| TGATTGCAGATAACGTTTAG+TGG | - | chr4_2:75560225-75560244 | None:intergenic | 35.0% | |
| AGATTCTGATTGGTAAGCTT+AGG | + | chr4_2:75560268-75560287 | Msa0622820:intron | 35.0% | |
| ATCGCATAATAACAGATTGC+TGG | + | chr4_2:75560509-75560528 | Msa0622820:intron | 35.0% | |
| ! | TTTCTGCTAATATTTGGGAC+TGG | - | chr4_2:75560565-75560584 | None:intergenic | 35.0% |
| ! | GAGAATAATAGCACTGAGTA+AGG | - | chr4_2:75560639-75560658 | None:intergenic | 35.0% |
| !! | GAAAAGAAAGGGTATGGTTT+TGG | + | chr4_2:75560703-75560722 | Msa0622820:intron | 35.0% |
| CATTTCAGAACAAACTATGG+AGG | + | chr4_2:75560862-75560881 | Msa0622820:intron | 35.0% | |
| TAACCTGTTAAAGTTTAGGG+CGG | - | chr4_2:75561196-75561215 | None:intergenic | 35.0% | |
| TGTGTGTCTCAAATAAACAC+AGG | + | chr4_2:75561237-75561256 | Msa0622820:three_prime_UTR | 35.0% | |
| TAAGGAAAAAAAAGGAGAGC+TGG | + | chr4_2:75561264-75561283 | Msa0622820:three_prime_UTR | 35.0% | |
| ACAATATCTTGAGATGGAGA+AGG | - | chr4_2:75561358-75561377 | None:intergenic | 35.0% | |
| TCTTGGACAATATCTTGAGA+TGG | - | chr4_2:75561364-75561383 | None:intergenic | 35.0% | |
| !! | GGAATAAGGTTTGCTATTCT+TGG | - | chr4_2:75561381-75561400 | None:intergenic | 35.0% |
| ATGCTAACTAATCCGGAATA+AGG | - | chr4_2:75561395-75561414 | None:intergenic | 35.0% | |
| GTTGACAATGCTAACTAATC+CGG | - | chr4_2:75561402-75561421 | None:intergenic | 35.0% | |
| ! | GAAGCTCTATGTGAGTTTTG+TGG | + | chr4_2:75557142-75557161 | Msa0622820:CDS | 40.0% |
| !! | AGCTCTATGTGAGTTTTGTG+GGG | + | chr4_2:75557144-75557163 | Msa0622820:CDS | 40.0% |
| GTCTTTGCTTGCATTGTGAT+GGG | + | chr4_2:75557206-75557225 | Msa0622820:CDS | 40.0% | |
| CGAAATTACACTTATCGCAG+AGG | - | chr4_2:75557279-75557298 | None:intergenic | 40.0% | |
| ACAATTTATGATCGACGCAG+CGG | - | chr4_2:75557315-75557334 | None:intergenic | 40.0% | |
| CTCTCTGTCAAGTTTGTGAT+TGG | + | chr4_2:75557335-75557354 | Msa0622820:CDS | 40.0% | |
| CTTAGATAAGTCTGCCAAAG+AGG | - | chr4_2:75557425-75557444 | None:intergenic | 40.0% | |
| ! | TTAGGCAAAGCACTAGTACT+AGG | - | chr4_2:75557499-75557518 | None:intergenic | 40.0% |
| !!! | CGGTCACTGATTTCAGTTTT+AGG | - | chr4_2:75557517-75557536 | None:intergenic | 40.0% |
| ! | TCTGCTCCAAATGTTGATTG+CGG | - | chr4_2:75557540-75557559 | None:intergenic | 40.0% |
| ! | ACCAACGAAGCCATTCTTTT+CGG | - | chr4_2:75557566-75557585 | None:intergenic | 40.0% |
| ! | AAAGAATGGCTTCGTTGGTT+TGG | + | chr4_2:75557567-75557586 | Msa0622820:CDS | 40.0% |
| ACGAAATCAAAACCTTCGGT+TGG | - | chr4_2:75557729-75557748 | None:intergenic | 40.0% | |
| AATGGAAATCATAGGCACAC+TGG | - | chr4_2:75557869-75557888 | None:intergenic | 40.0% | |
| ! | TCATGTTCGAGTCTTGTGAA+TGG | - | chr4_2:75557887-75557906 | None:intergenic | 40.0% |
| AAAACTTATGTGGGTCGAAG+AGG | - | chr4_2:75557938-75557957 | None:intergenic | 40.0% | |
| CCAACTTTGTCACACCATAT+TGG | - | chr4_2:75558098-75558117 | None:intergenic | 40.0% | |
| CCAATATGGTGTGACAAAGT+TGG | + | chr4_2:75558095-75558114 | Msa0622820:intron | 40.0% | |
| AACTGAGTTCCTTAAGCATG+CGG | + | chr4_2:75558123-75558142 | Msa0622820:intron | 40.0% | |
| AATTCATGACCGCATGCTTA+AGG | - | chr4_2:75558135-75558154 | None:intergenic | 40.0% | |
| TCAAGGATGCCATGATGTTA+AGG | + | chr4_2:75558475-75558494 | Msa0622820:CDS | 40.0% | |
| GGATCTAACAATTCATGAGG+GGG | + | chr4_2:75558496-75558515 | Msa0622820:CDS | 40.0% | |
| ACTGCCACAAAATACAACCA+CGG | + | chr4_2:75558602-75558621 | Msa0622820:CDS | 40.0% | |
| ! | ATCTCCGTGGTTGTATTTTG+TGG | - | chr4_2:75558609-75558628 | None:intergenic | 40.0% |
| ACAAAATACAACCACGGAGA+TGG | + | chr4_2:75558608-75558627 | Msa0622820:CDS | 40.0% | |
| CAAAATACAACCACGGAGAT+GGG | + | chr4_2:75558609-75558628 | Msa0622820:CDS | 40.0% | |
| AAAATACAACCACGGAGATG+GGG | + | chr4_2:75558610-75558629 | Msa0622820:CDS | 40.0% | |
| ! | TGACTGCTACATTTTGTGAC+TGG | - | chr4_2:75558668-75558687 | None:intergenic | 40.0% |
| GCATTGGGAATCAAATTTGG+AGG | + | chr4_2:75559189-75559208 | Msa0622820:CDS | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr4_2:75559670-75559689 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr4_2:75559670-75559689 | Msa0622820:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr4_2:75559671-75559690 | Msa0622820:intron | 40.0% | |
| TGAATATCATGTACACCCTC+CGG | - | chr4_2:75559689-75559708 | None:intergenic | 40.0% | |
| !! | CCATGAATGTCGACTTAAAC+AGG | - | chr4_2:75559817-75559836 | None:intergenic | 40.0% |
| CCTGTTTAAGTCGACATTCA+TGG | + | chr4_2:75559814-75559833 | Msa0622820:intron | 40.0% | |
| GATACAAGAAAACGCGTGAA+AGG | + | chr4_2:75560148-75560167 | Msa0622820:CDS | 40.0% | |
| TCAGAATCTCATATCCTGCA+AGG | - | chr4_2:75560257-75560276 | None:intergenic | 40.0% | |
| GCAGGATATGAGATTCTGAT+TGG | + | chr4_2:75560258-75560277 | Msa0622820:three_prime_UTR | 40.0% | |
| TCAAAACTTGACTACTTGGG+TGG | + | chr4_2:75560398-75560417 | Msa0622820:intron | 40.0% | |
| !!! | GAAAGGGTATGGTTTTGGAT+AGG | + | chr4_2:75560708-75560727 | Msa0622820:intron | 40.0% |
| GTCAACAAGTATAGCTATGG+TGG | - | chr4_2:75560973-75560992 | None:intergenic | 40.0% | |
| GTTAGAAAAGCGGAAGCAAA+TGG | - | chr4_2:75561050-75561069 | None:intergenic | 40.0% | |
| ! | GCAAGCTAGAAAGAGTATGT+AGG | - | chr4_2:75561153-75561172 | None:intergenic | 40.0% |
| !! | ATACTCTTTCTAGCTTGCAG+AGG | + | chr4_2:75561155-75561174 | Msa0622820:three_prime_UTR | 40.0% |
| !! | TACTCTTTCTAGCTTGCAGA+GGG | + | chr4_2:75561156-75561175 | Msa0622820:three_prime_UTR | 40.0% |
| GTAGTGTTTGTGAAGGACTA+AGG | - | chr4_2:75561336-75561355 | None:intergenic | 40.0% | |
| TTAGTTAGCATTGTCAACCG+TGG | + | chr4_2:75561404-75561423 | Msa0622820:three_prime_UTR | 40.0% | |
| AGAACATGTATCGCAATCCA+CGG | - | chr4_2:75561424-75561443 | None:intergenic | 40.0% | |
| !! | GATACATGTTCTTGACTTGC+TGG | + | chr4_2:75561432-75561451 | Msa0622820:three_prime_UTR | 40.0% |
| ACAATGCAAGCAAAGACGAG+CGG | - | chr4_2:75557203-75557222 | None:intergenic | 45.0% | |
| CGTCTTTGCTTGCATTGTGA+TGG | + | chr4_2:75557205-75557224 | Msa0622820:CDS | 45.0% | |
| GAGACAGAGAATTTGCAGAG+TGG | - | chr4_2:75557237-75557256 | None:intergenic | 45.0% | |
| ! | GTGCTACTCACTTTCTACAC+TGG | + | chr4_2:75557394-75557413 | Msa0622820:CDS | 45.0% |
| GAGCAGAAACCCGAAAAGAA+TGG | + | chr4_2:75557553-75557572 | Msa0622820:CDS | 45.0% | |
| ! | CCAACGAAGCCATTCTTTTC+GGG | - | chr4_2:75557565-75557584 | None:intergenic | 45.0% |
| ! | TGGTTTGGCGAATGACAAGT+TGG | + | chr4_2:75557582-75557601 | Msa0622820:CDS | 45.0% |
| GGTTTGGCGAATGACAAGTT+GGG | + | chr4_2:75557583-75557602 | Msa0622820:CDS | 45.0% | |
| TCAAGACTCAAACCAACCGA+AGG | + | chr4_2:75557714-75557733 | Msa0622820:CDS | 45.0% | |
| AGGTGCTCTTCCATACACAT+CGG | - | chr4_2:75558168-75558187 | None:intergenic | 45.0% | |
| AAATACAACCACGGAGATGG+GGG | + | chr4_2:75558611-75558630 | Msa0622820:CDS | 45.0% | |
| TAGCAGTCACATTGAGACTG+CGG | + | chr4_2:75558679-75558698 | Msa0622820:CDS | 45.0% | |
| ! | ATTTTTCCATCATCAGGGGC+TGG | + | chr4_2:75558959-75558978 | Msa0622820:CDS | 45.0% |
| ! | TTGATGCAGGGCATCAACAA+TGG | + | chr4_2:75558995-75559014 | Msa0622820:CDS | 45.0% |
| CCTGAATGAGTTTGACTCTG+AGG | - | chr4_2:75559076-75559095 | None:intergenic | 45.0% | |
| CCTCAGAGTCAAACTCATTC+AGG | + | chr4_2:75559073-75559092 | Msa0622820:CDS | 45.0% | |
| TTACCTCCAGTGTTTCATCC+TGG | + | chr4_2:75559160-75559179 | Msa0622820:CDS | 45.0% | |
| GATTCACCAGGATGAAACAC+TGG | - | chr4_2:75559169-75559188 | None:intergenic | 45.0% | |
| TTCATCCTGGTGAATCGCAT+TGG | + | chr4_2:75559173-75559192 | Msa0622820:CDS | 45.0% | |
| TCATCCTGGTGAATCGCATT+GGG | + | chr4_2:75559174-75559193 | Msa0622820:CDS | 45.0% | |
| !! | TTGGCTTTATCCCTTGCTTG+AGG | - | chr4_2:75559223-75559242 | None:intergenic | 45.0% |
| CGACATTCATGGACAATCAC+AGG | + | chr4_2:75559825-75559844 | Msa0622820:intron | 45.0% | |
| ATATGCGTCTCGCAAAGCAA+GGG | + | chr4_2:75560123-75560142 | Msa0622820:CDS | 45.0% | |
| GTTTAGTGGTCGCTCAAAAG+AGG | - | chr4_2:75560211-75560230 | None:intergenic | 45.0% | |
| AACTTGACTACTTGGGTGGT+TGG | + | chr4_2:75560402-75560421 | Msa0622820:intron | 45.0% | |
| !! | ACTCTTTCTAGCTTGCAGAG+GGG | + | chr4_2:75561157-75561176 | Msa0622820:three_prime_UTR | 45.0% |
| GATCCGCCCTAAACTTTAAC+AGG | + | chr4_2:75561190-75561209 | Msa0622820:three_prime_UTR | 45.0% | |
| GGAGAAGGTAGTGTTTGTGA+AGG | - | chr4_2:75561343-75561362 | None:intergenic | 45.0% | |
| AAGATGCATACAGTTGCTGC+AGG | - | chr4_2:75561471-75561490 | None:intergenic | 45.0% | |
| AAGCAAAGACGAGCGGAATC+AGG | - | chr4_2:75557196-75557215 | None:intergenic | 50.0% | |
| CTGCAAATTCTCTGTCTCGC+AGG | + | chr4_2:75557239-75557258 | Msa0622820:CDS | 50.0% | |
| ! | CTACACTGGTTGTCCCTCTT+TGG | + | chr4_2:75557408-75557427 | Msa0622820:CDS | 50.0% |
| TGACCGCCGCAATCAACATT+TGG | + | chr4_2:75557531-75557550 | Msa0622820:CDS | 50.0% | |
| ! | GCTCCAAATGTTGATTGCGG+CGG | - | chr4_2:75557537-75557556 | None:intergenic | 50.0% |
| CCCGAAAAGAATGGCTTCGT+TGG | + | chr4_2:75557562-75557581 | Msa0622820:CDS | 50.0% | |
| CGATTCCTGACCGATGTGTA+TGG | + | chr4_2:75558155-75558174 | Msa0622820:intron | 50.0% | |
| CTCTTCCATACACATCGGTC+AGG | - | chr4_2:75558163-75558182 | None:intergenic | 50.0% | |
| CTAACAATTCATGAGGGGGC+CGG | + | chr4_2:75558500-75558519 | Msa0622820:CDS | 50.0% | |
| ATTCTATTCCCCCATCTCCG+TGG | - | chr4_2:75558622-75558641 | None:intergenic | 50.0% | |
| TCACATTGAGACTGCGGTAG+AGG | + | chr4_2:75558685-75558704 | Msa0622820:CDS | 50.0% | |
| GGCATGCTTCTGTTGCAACT+AGG | - | chr4_2:75559043-75559062 | None:intergenic | 50.0% | |
| ! | TGCAACAGAAGCATGCCTCT+AGG | + | chr4_2:75559046-75559065 | Msa0622820:CDS | 50.0% |
| ! | GCAACAGAAGCATGCCTCTA+GGG | + | chr4_2:75559047-75559066 | Msa0622820:CDS | 50.0% |
| ! | TGACTCTGAGGAAACCCTAG+AGG | - | chr4_2:75559064-75559083 | None:intergenic | 50.0% |
| TCACCAGGATGAAACACTGG+AGG | - | chr4_2:75559166-75559185 | None:intergenic | 50.0% | |
| GATTCCCAATGCGATTCACC+AGG | - | chr4_2:75559181-75559200 | None:intergenic | 50.0% | |
| GATATGCGTCTCGCAAAGCA+AGG | + | chr4_2:75560122-75560141 | Msa0622820:CDS | 50.0% | |
| ATGCATACAGTTGCTGCAGG+TGG | - | chr4_2:75561468-75561487 | None:intergenic | 50.0% | |
| TTGTGGGGTTGCAAGAGCTG+TGG | + | chr4_2:75557159-75557178 | Msa0622820:CDS | 55.0% | |
| ACTTATCGCAGAGGAGCGAG+CGG | - | chr4_2:75557270-75557289 | None:intergenic | 55.0% | |
| ! | GCGAATGACAAGTTGGGCGA+AGG | + | chr4_2:75557589-75557608 | Msa0622820:CDS | 55.0% |
| ACCCTCGTTACTATCCGAGC+TGG | + | chr4_2:75557814-75557833 | Msa0622820:intron | 55.0% | |
| CCCAGCTCGGATAGTAACGA+GGG | - | chr4_2:75557818-75557837 | None:intergenic | 55.0% | |
| CCCTCGTTACTATCCGAGCT+GGG | + | chr4_2:75557815-75557834 | Msa0622820:intron | 55.0% | |
| ACCCAGCTCGGATAGTAACG+AGG | - | chr4_2:75557819-75557838 | None:intergenic | 55.0% | |
| TCGTTACTATCCGAGCTGGG+TGG | + | chr4_2:75557818-75557837 | Msa0622820:intron | 55.0% | |
| TTATGTGCGTCCACCCAGCT+CGG | - | chr4_2:75557831-75557850 | None:intergenic | 55.0% | |
| GGTCGAAGAGGCAATGAGCA+TGG | - | chr4_2:75557926-75557945 | None:intergenic | 55.0% | |
| !! | GGAAGAGCACCTGTTGTGAG+AGG | + | chr4_2:75558176-75558195 | Msa0622820:intron | 55.0% |
| GAGACTGCGGTAGAGGTTAC+CGG | + | chr4_2:75558692-75558711 | Msa0622820:intron | 55.0% | |
| TTTCCATCATCAGGGGCTGG+TGG | + | chr4_2:75558962-75558981 | Msa0622820:CDS | 55.0% | |
| ! | AGGGTGCTTGTCCTCAAGCA+AGG | + | chr4_2:75559209-75559228 | Msa0622820:CDS | 55.0% |
| GGGTGCTTGTCCTCAAGCAA+GGG | + | chr4_2:75559210-75559229 | Msa0622820:CDS | 55.0% | |
| TTATCGCAGAGGAGCGAGCG+GGG | - | chr4_2:75557268-75557287 | None:intergenic | 60.0% | |
| CTTATCGCAGAGGAGCGAGC+GGG | - | chr4_2:75557269-75557288 | None:intergenic | 60.0% | |
| GAGCTGGGTGGACGCACATA+AGG | + | chr4_2:75557830-75557849 | Msa0622820:intron | 60.0% | |
| CTGGGTGGACGCACATAAGG+CGG | + | chr4_2:75557833-75557852 | Msa0622820:intron | 60.0% | |
| AGGGGCTGACCTCTCACAAC+AGG | - | chr4_2:75558188-75558207 | None:intergenic | 60.0% | |
| GATCCACCAGCCCCTGATGA+TGG | - | chr4_2:75558968-75558987 | None:intergenic | 60.0% | |
| AGCTTGCAGAGGGGAGTCGA+TGG | + | chr4_2:75561166-75561185 | Msa0622820:three_prime_UTR | 60.0% | |
| CAGTTGCTGCAGGTGGACAG+TGG | - | chr4_2:75561461-75561480 | None:intergenic | 60.0% | |
| GAGGGGGCCGGTCTATGTGA+AGG | + | chr4_2:75558512-75558531 | Msa0622820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 75557139 | 75561571 | 75557139 | ID=Msa0622820;Name=Msa0622820 |
| chr4_2 | mRNA | 75557139 | 75561571 | 75557139 | ID=Msa0622820-mRNA-1;Parent=Msa0622820;Name=Msa0622820-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.5|0.6|1|0.75|0.8|5|474|433 |
| chr4_2 | exon | 75557139 | 75557735 | 75557139 | ID=Msa0622820-mRNA-1:exon:22911;Parent=Msa0622820-mRNA-1 |
| chr4_2 | exon | 75558473 | 75558706 | 75558473 | ID=Msa0622820-mRNA-1:exon:22912;Parent=Msa0622820-mRNA-1 |
| chr4_2 | exon | 75558929 | 75559275 | 75558929 | ID=Msa0622820-mRNA-1:exon:22913;Parent=Msa0622820-mRNA-1 |
| chr4_2 | exon | 75560105 | 75560279 | 75560105 | ID=Msa0622820-mRNA-1:exon:22914;Parent=Msa0622820-mRNA-1 |
| chr4_2 | exon | 75561149 | 75561571 | 75561149 | ID=Msa0622820-mRNA-1:exon:22915;Parent=Msa0622820-mRNA-1 |
| chr4_2 | CDS | 75557139 | 75557735 | 75557139 | ID=Msa0622820-mRNA-1:cds;Parent=Msa0622820-mRNA-1 |
| chr4_2 | CDS | 75558473 | 75558706 | 75558473 | ID=Msa0622820-mRNA-1:cds;Parent=Msa0622820-mRNA-1 |
| chr4_2 | CDS | 75558929 | 75559275 | 75558929 | ID=Msa0622820-mRNA-1:cds;Parent=Msa0622820-mRNA-1 |
| chr4_2 | CDS | 75560105 | 75560228 | 75560105 | ID=Msa0622820-mRNA-1:cds;Parent=Msa0622820-mRNA-1 |
| chr4_2 | three_prime_UTR | 75560229 | 75560279 | 75560229 | ID=Msa0622820-mRNA-1:three_prime_utr;Parent=Msa0622820-mRNA-1 |
| chr4_2 | three_prime_UTR | 75561149 | 75561571 | 75561149 | ID=Msa0622820-mRNA-1:three_prime_utr;Parent=Msa0622820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
