Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337830 | KEH39291.1 | 88.007 | 542 | 33 | 3 | 1 | 540 | 1 | 512 | 0.0 | 922 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0221430 | Msa0337830 | 0.831172 | 1.940704e-55 | -8.615850e-47 |
| Msa0263030 | Msa0337830 | 0.896667 | 2.961619e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337830 | MtrunA17_Chr2g0325781 | 92.105 | 304 | 22 | 1 | 1 | 302 | 1 | 304 | 0.0 | 557 |
| Msa0337830 | MtrunA17_Chr2g0325701 | 52.557 | 567 | 170 | 6 | 3 | 540 | 4 | 500 | 7.84e-163 | 476 |
| Msa0337830 | MtrunA17_Chr2g0325691 | 59.794 | 485 | 169 | 6 | 1 | 460 | 1 | 484 | 2.18e-161 | 477 |
| Msa0337830 | MtrunA17_Chr2g0325691 | 44.131 | 426 | 140 | 11 | 131 | 477 | 323 | 729 | 1.09e-67 | 232 |
| Msa0337830 | MtrunA17_Chr2g0325691 | 38.988 | 336 | 142 | 6 | 195 | 471 | 293 | 624 | 7.04e-36 | 142 |
| Msa0337830 | MtrunA17_Chr2g0325691 | 34.711 | 363 | 200 | 7 | 58 | 396 | 368 | 717 | 5.03e-32 | 131 |
| Msa0337830 | MtrunA17_Chr2g0325231 | 52.372 | 506 | 194 | 8 | 1 | 467 | 2 | 499 | 4.65e-134 | 412 |
| Msa0337830 | MtrunA17_Chr2g0325231 | 52.130 | 493 | 202 | 9 | 66 | 540 | 304 | 780 | 1.70e-124 | 387 |
| Msa0337830 | MtrunA17_Chr2g0325661 | 41.898 | 685 | 251 | 15 | 1 | 540 | 1 | 683 | 5.08e-127 | 393 |
| Msa0337830 | MtrunA17_Chr6g0471251 | 44.444 | 612 | 229 | 14 | 1 | 540 | 2 | 574 | 6.39e-119 | 369 |
| Msa0337830 | MtrunA17_Chr2g0325711 | 42.167 | 600 | 225 | 9 | 57 | 541 | 53 | 645 | 4.45e-111 | 350 |
| Msa0337830 | MtrunA17_Chr2g0325351 | 43.945 | 578 | 192 | 14 | 1 | 535 | 2 | 490 | 6.17e-110 | 343 |
| Msa0337830 | MtrunA17_Chr7g0235901 | 61.613 | 310 | 118 | 1 | 80 | 389 | 1 | 309 | 1.96e-108 | 327 |
| Msa0337830 | MtrunA17_Chr2g0325811 | 43.049 | 669 | 229 | 20 | 1 | 540 | 1 | 646 | 7.71e-106 | 337 |
| Msa0337830 | MtrunA17_Chr2g0325621 | 46.289 | 512 | 202 | 11 | 46 | 540 | 13 | 468 | 5.62e-103 | 324 |
| Msa0337830 | MtrunA17_Chr2g0325221 | 41.860 | 602 | 210 | 15 | 1 | 469 | 1 | 595 | 2.02e-97 | 311 |
| Msa0337830 | MtrunA17_Chr2g0325221 | 33.209 | 268 | 157 | 6 | 98 | 359 | 346 | 597 | 1.97e-17 | 85.9 |
| Msa0337830 | MtrunA17_Chr2g0325741 | 55.340 | 309 | 87 | 6 | 1 | 258 | 2 | 310 | 5.33e-96 | 295 |
| Msa0337830 | MtrunA17_Chr2g0325321 | 38.218 | 662 | 241 | 15 | 41 | 535 | 3 | 663 | 6.46e-95 | 306 |
| Msa0337830 | MtrunA17_Chr5g0416271 | 42.975 | 484 | 164 | 9 | 57 | 540 | 21 | 392 | 3.98e-88 | 280 |
| Msa0337830 | MtrunA17_Chr2g0325861 | 54.030 | 335 | 129 | 4 | 206 | 540 | 420 | 729 | 2.38e-85 | 283 |
| Msa0337830 | MtrunA17_Chr2g0325861 | 39.483 | 542 | 233 | 12 | 1 | 467 | 2 | 523 | 5.33e-78 | 263 |
| Msa0337830 | MtrunA17_Chr2g0325761 | 39.677 | 620 | 223 | 15 | 1 | 476 | 1 | 613 | 2.46e-85 | 279 |
| Msa0337830 | MtrunA17_Chr2g0333341 | 36.627 | 587 | 248 | 12 | 1 | 536 | 1 | 514 | 2.46e-81 | 266 |
| Msa0337830 | MtrunA17_Chr2g0325361 | 44.273 | 454 | 183 | 8 | 98 | 536 | 483 | 881 | 3.73e-75 | 258 |
| Msa0337830 | MtrunA17_Chr2g0325361 | 37.132 | 509 | 239 | 12 | 40 | 467 | 2 | 510 | 2.55e-60 | 216 |
| Msa0337830 | MtrunA17_Chr2g0325361 | 41.341 | 358 | 159 | 7 | 129 | 444 | 363 | 711 | 6.40e-50 | 185 |
| Msa0337830 | MtrunA17_Chr2g0325281 | 37.333 | 600 | 212 | 16 | 41 | 477 | 3 | 601 | 2.96e-73 | 244 |
| Msa0337830 | MtrunA17_Chr2g0280141 | 35.727 | 571 | 239 | 10 | 90 | 541 | 65 | 626 | 7.67e-71 | 243 |
| Msa0337830 | MtrunA17_Chr2g0325721 | 37.288 | 531 | 239 | 11 | 1 | 467 | 1 | 501 | 8.18e-71 | 235 |
| Msa0337830 | MtrunA17_Chr2g0325611 | 47.661 | 342 | 143 | 8 | 203 | 535 | 78 | 392 | 1.39e-65 | 224 |
| Msa0337830 | MtrunA17_Chr2g0325611 | 39.189 | 222 | 103 | 3 | 157 | 349 | 92 | 310 | 7.14e-24 | 105 |
| Msa0337830 | MtrunA17_Chr2g0325611 | 31.928 | 332 | 158 | 12 | 38 | 333 | 9 | 308 | 2.33e-16 | 82.4 |
| Msa0337830 | MtrunA17_Chr2g0325651 | 39.467 | 413 | 194 | 12 | 1 | 385 | 2 | 386 | 3.53e-62 | 209 |
| Msa0337830 | MtrunA17_Chr2g0325651 | 31.907 | 257 | 158 | 4 | 224 | 463 | 113 | 369 | 8.99e-16 | 79.3 |
| Msa0337830 | MtrunA17_Chr2g0325641 | 47.401 | 327 | 114 | 8 | 191 | 476 | 7 | 316 | 4.79e-57 | 194 |
| Msa0337830 | MtrunA17_Chr2g0325641 | 40.113 | 177 | 99 | 1 | 284 | 460 | 4 | 173 | 9.76e-17 | 81.6 |
| Msa0337830 | MtrunA17_Chr2g0325241 | 41.543 | 337 | 140 | 6 | 224 | 540 | 110 | 409 | 4.27e-49 | 175 |
| Msa0337830 | MtrunA17_Chr2g0325241 | 32.012 | 328 | 147 | 10 | 48 | 363 | 61 | 324 | 7.82e-19 | 89.0 |
| Msa0337830 | MtrunA17_Chr2g0325261 | 39.155 | 355 | 148 | 11 | 1 | 337 | 2 | 306 | 4.10e-47 | 167 |
| Msa0337830 | MtrunA17_Chr2g0325341 | 39.155 | 355 | 148 | 11 | 1 | 337 | 2 | 306 | 4.10e-47 | 167 |
| Msa0337830 | MtrunA17_Chr5g0434751 | 48.736 | 277 | 116 | 4 | 196 | 457 | 3 | 268 | 5.38e-47 | 166 |
| Msa0337830 | MtrunA17_Chr5g0434751 | 34.701 | 268 | 141 | 7 | 143 | 389 | 2 | 256 | 3.56e-18 | 85.5 |
| Msa0337830 | MtrunA17_Chr5g0434751 | 34.524 | 252 | 142 | 7 | 114 | 353 | 22 | 262 | 1.61e-12 | 68.6 |
| Msa0337830 | MtrunA17_Chr5g0434741 | 37.798 | 336 | 162 | 8 | 1 | 321 | 1 | 304 | 1.01e-45 | 163 |
| Msa0337830 | MtrunA17_Chr2g0325751 | 60.131 | 153 | 54 | 1 | 332 | 484 | 2 | 147 | 3.04e-45 | 156 |
| Msa0337830 | MtrunA17_Chr2g0325751 | 38.168 | 131 | 60 | 1 | 237 | 367 | 5 | 114 | 9.13e-13 | 66.2 |
| Msa0337830 | MtrunA17_Chr2g0325751 | 40.496 | 121 | 65 | 1 | 221 | 341 | 3 | 116 | 2.24e-12 | 65.1 |
| Msa0337830 | MtrunA17_Chr2g0332961 | 47.191 | 267 | 91 | 6 | 270 | 536 | 69 | 285 | 7.80e-41 | 151 |
| Msa0337830 | MtrunA17_Chr2g0332961 | 35.433 | 254 | 125 | 8 | 63 | 306 | 4 | 228 | 1.41e-22 | 99.4 |
| Msa0337830 | MtrunA17_Chr2g0325801 | 54.938 | 162 | 36 | 2 | 1 | 162 | 2 | 126 | 1.40e-40 | 143 |
| Msa0337830 | MtrunA17_Chr2g0325771 | 92.754 | 69 | 5 | 0 | 472 | 540 | 12 | 80 | 3.86e-38 | 138 |
| Msa0337830 | MtrunA17_Chr2g0325201 | 39.669 | 242 | 128 | 4 | 149 | 389 | 2 | 226 | 8.78e-31 | 119 |
| Msa0337830 | MtrunA17_Chr2g0325791 | 52.027 | 148 | 57 | 2 | 194 | 341 | 23 | 156 | 8.45e-30 | 119 |
| Msa0337830 | MtrunA17_Chr3g0140581 | 42.342 | 111 | 64 | 0 | 103 | 213 | 1 | 111 | 1.82e-19 | 85.5 |
| Msa0337830 | MtrunA17_Chr2g0325211 | 38.967 | 213 | 104 | 4 | 290 | 500 | 2 | 190 | 7.07e-19 | 84.7 |
| Msa0337830 | MtrunA17_Chr2g0325211 | 36.646 | 161 | 98 | 1 | 234 | 394 | 2 | 158 | 2.00e-13 | 68.9 |
| Msa0337830 | MtrunA17_Chr2g0325211 | 36.181 | 199 | 93 | 4 | 248 | 444 | 2 | 168 | 1.03e-11 | 64.3 |
| Msa0337830 | MtrunA17_Chr2g0332951 | 50.450 | 111 | 48 | 2 | 427 | 536 | 5 | 109 | 5.51e-17 | 80.1 |
| Msa0337830 | MtrunA17_Chr2g0325631 | 55.224 | 67 | 22 | 1 | 477 | 535 | 1 | 67 | 5.41e-14 | 72.4 |
| Msa0337830 | MtrunA17_Chr4g0044221 | 34.848 | 198 | 105 | 6 | 127 | 319 | 15 | 193 | 1.49e-13 | 72.0 |
| Msa0337830 | MtrunA17_Chr4g0044221 | 48.454 | 97 | 36 | 4 | 450 | 536 | 170 | 262 | 2.81e-13 | 71.2 |
| Msa0337830 | MtrunA17_Chr2g0325331 | 53.731 | 67 | 23 | 1 | 477 | 535 | 1 | 67 | 3.16e-13 | 68.2 |
| Msa0337830 | MtrunA17_Chr5g0434761 | 53.731 | 67 | 23 | 1 | 477 | 535 | 1 | 67 | 1.76e-12 | 67.8 |
| Msa0337830 | MtrunA17_Chr2g0325731 | 60.345 | 58 | 23 | 0 | 239 | 296 | 1 | 58 | 1.89e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 110 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTACACCGTGGAATAAT+TGG | 0.126685 | 2_4:-57962083 | None:intergenic |
| CTCCTCAATATCTCTCTTTA+TGG | 0.161451 | 2_4:-57960795 | None:intergenic |
| CCTTCAAATTCACCCTCTTT+TGG | 0.208741 | 2_4:-57961337 | None:intergenic |
| GAAAATTCTTTGGTAGTTCT+TGG | 0.268066 | 2_4:+57962262 | Msa0337830:three_prime_UTR |
| AGAAAATACTGAAAATTCTT+TGG | 0.285376 | 2_4:+57962252 | Msa0337830:three_prime_UTR |
| GTGATAGTATCCCTCTTCTT+TGG | 0.305836 | 2_4:-57960563 | None:intergenic |
| TTATCAGATACCCTCTTAAC+AGG | 0.329148 | 2_4:-57960590 | None:intergenic |
| AAAGGATGGACAGCTCTATT+TGG | 0.335172 | 2_4:+57960931 | Msa0337830:CDS |
| TTTCTATTTGCGCCGTCCTT+TGG | 0.346892 | 2_4:-57960757 | None:intergenic |
| TGTGGAACTGTTTCGGACCT+TGG | 0.386640 | 2_4:+57962381 | Msa0337830:three_prime_UTR |
| GTGGAACTGTTTCGGACCTT+GGG | 0.387084 | 2_4:+57962382 | Msa0337830:three_prime_UTR |
| TCAAAAGAAAAGAAATTTGA+TGG | 0.390578 | 2_4:+57961421 | Msa0337830:CDS |
| CATCATCATCATATGATGTT+GGG | 0.391874 | 2_4:-57960655 | None:intergenic |
| TCTGTCAACTCAGGCTCCTT+CGG | 0.393500 | 2_4:-57961742 | None:intergenic |
| CTATCACACTGCCTGTTAAG+AGG | 0.418465 | 2_4:+57960579 | Msa0337830:CDS |
| AGATAGCTGTGGAACTGTTT+CGG | 0.421798 | 2_4:+57962374 | Msa0337830:three_prime_UTR |
| TCAAAAGAGAAGCAGCTTGA+TGG | 0.422948 | 2_4:+57961127 | Msa0337830:CDS |
| AATTTGTTGTGCTTGTTACT+TGG | 0.424201 | 2_4:+57963552 | Msa0337830:three_prime_UTR |
| GAAAGACTCTGGTCAAGTTA+AGG | 0.433787 | 2_4:-57963682 | None:intergenic |
| TCTTACACCGTGGAATAATT+GGG | 0.440368 | 2_4:-57962082 | None:intergenic |
| GATTCAAAGTCTTGACGAAA+AGG | 0.441450 | 2_4:-57960503 | None:intergenic |
| TTTCTTCATCAAATCGTTCA+AGG | 0.454280 | 2_4:-57960621 | None:intergenic |
| GAAGGAGCTAGTGAATGATT+TGG | 0.455266 | 2_4:+57961060 | Msa0337830:CDS |
| TTACACAAAGGGTTAATCTT+CGG | 0.458961 | 2_4:-57962183 | None:intergenic |
| TTGATTCGAGCTCCTTCAGT+TGG | 0.476903 | 2_4:-57961402 | None:intergenic |
| TTTGATGAGGAAATAGGATC+TGG | 0.477977 | 2_4:+57961793 | Msa0337830:CDS |
| ACATCATCATCATATGATGT+TGG | 0.479570 | 2_4:-57960656 | None:intergenic |
| ACTCAAGTTAAAAGAGAAGC+AGG | 0.485078 | 2_4:+57961666 | Msa0337830:CDS |
| GCAATTGAAAGGACAAGTTA+AGG | 0.485918 | 2_4:+57961264 | Msa0337830:CDS |
| AGAATGTCAGTTTCATCACT+TGG | 0.487761 | 2_4:-57962002 | None:intergenic |
| AATTATTCCACGGTGTAAGA+AGG | 0.490364 | 2_4:+57962085 | Msa0337830:CDS |
| TATTGTTTCTCTGTCAACTC+AGG | 0.490786 | 2_4:-57961751 | None:intergenic |
| TTGATTCATGTTCCTCCACT+CGG | 0.496273 | 2_4:-57961150 | None:intergenic |
| TTAAAAGAGAAGCAGGTTGA+AGG | 0.496390 | 2_4:+57961673 | Msa0337830:CDS |
| GAAGGAGTTTAAAACGAAGA+AGG | 0.497526 | 2_4:+57961492 | Msa0337830:CDS |
| TGTTTATTTAGCTTTGACTC+GGG | 0.498384 | 2_4:-57961709 | None:intergenic |
| TAGTTCAATAATGGATATTG+AGG | 0.501636 | 2_4:+57960388 | None:intergenic |
| TGCAAGTTCTTTCTTGAGTG+AGG | 0.502269 | 2_4:-57960708 | None:intergenic |
| TTGGTTCTAACCCCTTCACT+TGG | 0.503033 | 2_4:-57961318 | None:intergenic |
| CCAAAAGAGGGTGAATTTGA+AGG | 0.507121 | 2_4:+57961337 | Msa0337830:CDS |
| GAAGGAGGAATTCAAAGGTC+GGG | 0.508275 | 2_4:+57961510 | Msa0337830:CDS |
| GGATGGACAGCTCTATTTGG+TGG | 0.511268 | 2_4:+57960934 | Msa0337830:CDS |
| TTCCATAAAGAGAGATATTG+AGG | 0.514073 | 2_4:+57960793 | Msa0337830:CDS |
| TAGATTCTAGCCCCTTCAGT+TGG | 0.517790 | 2_4:-57961192 | None:intergenic |
| AAGGACGGCGCAAATAGAAA+AGG | 0.522739 | 2_4:+57960760 | Msa0337830:CDS |
| CGAAGCTCACAAGAAAATGC+AGG | 0.525690 | 2_4:+57960874 | Msa0337830:CDS |
| CAACTTGATGTCCAAGTGAA+GGG | 0.525880 | 2_4:+57961307 | Msa0337830:CDS |
| ACAATCTCAAATCACAAGAA+AGG | 0.527094 | 2_4:+57961242 | Msa0337830:CDS |
| GAAATTTGATGGACAAGTGA+AGG | 0.529834 | 2_4:+57961432 | Msa0337830:CDS |
| ATGTTTATTTAGCTTTGACT+CGG | 0.530810 | 2_4:-57961710 | None:intergenic |
| TGATTTGAAGTACTCAACCT+TGG | 0.535077 | 2_4:-57961569 | None:intergenic |
| ATACTTGTTTCATCAGTGGT+TGG | 0.537065 | 2_4:-57961969 | None:intergenic |
| TAATGCAGCTACATCTTACA+TGG | 0.538418 | 2_4:+57961932 | Msa0337830:intron |
| GGAATTTGAAAGCGAAGTGA+AGG | 0.538980 | 2_4:+57961042 | Msa0337830:CDS |
| AGAACTCAAGACAAAAGAGT+TGG | 0.545966 | 2_4:+57960982 | Msa0337830:CDS |
| TGAAGGCAAGGTGAAGAAGC+TGG | 0.546278 | 2_4:+57961354 | Msa0337830:CDS |
| AGCGACATCAATAATCATGC+TGG | 0.546871 | 2_4:+57962134 | Msa0337830:CDS |
| TCAAAGCTAAATAAACATGA+TGG | 0.552723 | 2_4:+57961715 | Msa0337830:CDS |
| TTTGGAAACCACGCTATCAA+AGG | 0.554761 | 2_4:-57960545 | None:intergenic |
| CTGCATACTTGTTTCATCAG+TGG | 0.556772 | 2_4:-57961973 | None:intergenic |
| AGAAGGAGGAATTCAAAGGT+CGG | 0.559804 | 2_4:+57961509 | Msa0337830:CDS |
| ATATGATGTTGGGGACACCT+TGG | 0.560967 | 2_4:-57960645 | None:intergenic |
| AGAATTTGAAAGCCAACTGA+AGG | 0.562148 | 2_4:+57961180 | Msa0337830:CDS |
| GGAATTTAACAGTCAAGTGA+AGG | 0.564555 | 2_4:+57961474 | Msa0337830:CDS |
| GGAGTTTAAAACGAAGAAGG+AGG | 0.567527 | 2_4:+57961495 | Msa0337830:CDS |
| GCAGGTTGAAGGAGAAGTCG+AGG | 0.567704 | 2_4:+57961684 | Msa0337830:CDS |
| GATTTATCAGTTGACATGGC+AGG | 0.570315 | 2_4:-57960680 | None:intergenic |
| ATTATTCCACGGTGTAAGAA+GGG | 0.572016 | 2_4:+57962086 | Msa0337830:CDS |
| GAATGTCAGTTTCATCACTT+GGG | 0.573057 | 2_4:-57962001 | None:intergenic |
| CGAAGCAATTTGAAGAACGA+TGG | 0.576197 | 2_4:+57961596 | Msa0337830:CDS |
| ATCATCATCATATGATGTTG+GGG | 0.577102 | 2_4:-57960654 | None:intergenic |
| GCAACTTGATGTCCAAGTGA+AGG | 0.577454 | 2_4:+57961306 | Msa0337830:CDS |
| GAAGGGGTTAGAACCAAAAG+AGG | 0.578189 | 2_4:+57961324 | Msa0337830:CDS |
| GAAGGAGTTCCAGTCAAAAG+AGG | 0.579907 | 2_4:+57961450 | Msa0337830:CDS |
| AAAGAAGCAATTTAAAACCA+AGG | 0.581001 | 2_4:+57961552 | Msa0337830:CDS |
| GAAGAATTTAGAAATGCAAG+TGG | 0.588456 | 2_4:+57961219 | Msa0337830:CDS |
| ATTTGAGGATTGCCAAAGGA+CGG | 0.589376 | 2_4:+57960745 | Msa0337830:CDS |
| AGAGGGTGAATTTGAAGGCA+AGG | 0.589411 | 2_4:+57961342 | Msa0337830:CDS |
| ACTTAATGTAAAGGGACGGA+GGG | 0.592476 | 2_4:+57963610 | Msa0337830:three_prime_UTR |
| TAGCGTGGTTTCCAAAGAAG+AGG | 0.592488 | 2_4:+57960552 | Msa0337830:CDS |
| GAATTTGAAAGCCAACTGAA+GGG | 0.592533 | 2_4:+57961181 | Msa0337830:CDS |
| TATCACACTGCCTGTTAAGA+GGG | 0.592867 | 2_4:+57960580 | Msa0337830:CDS |
| GCATTTCAAGAGCCAACTGA+AGG | 0.597255 | 2_4:+57961390 | Msa0337830:CDS |
| TCACAAGAAAGGCAATTGAA+AGG | 0.597578 | 2_4:+57961253 | Msa0337830:CDS |
| GGATAACATTTCAAAACAGA+AGG | 0.598026 | 2_4:+57961021 | Msa0337830:CDS |
| AAGGTATAAAGGAAAGACTC+TGG | 0.599520 | 2_4:-57963693 | None:intergenic |
| TACTGAACCCAATTATTCCA+CGG | 0.601091 | 2_4:+57962075 | Msa0337830:CDS |
| AAGTTTATTTGCAAAACCCA+AGG | 0.601876 | 2_4:-57962398 | None:intergenic |
| GCAGCTTGATGGCCGAGTGG+AGG | 0.604745 | 2_4:+57961138 | Msa0337830:CDS |
| TGGACAGCTCTATTTGGTGG+AGG | 0.605355 | 2_4:+57960937 | Msa0337830:CDS |
| ATAATGTTCCTTTGATAGCG+TGG | 0.608827 | 2_4:+57960537 | Msa0337830:CDS |
| AAATGATTTATCAGTTGACA+TGG | 0.611942 | 2_4:-57960684 | None:intergenic |
| ACGAAGAAGGAGGAATTCAA+AGG | 0.614145 | 2_4:+57961505 | Msa0337830:CDS |
| GGAGTTCCAGTCAAAAGAGG+AGG | 0.625446 | 2_4:+57961453 | Msa0337830:CDS |
| AACTTAATGTAAAGGGACGG+AGG | 0.627354 | 2_4:+57963609 | Msa0337830:three_prime_UTR |
| CGATTTGATGAAGAAATCCA+AGG | 0.628989 | 2_4:+57960628 | Msa0337830:CDS |
| AACTTGATGTCCAAGTGAAG+GGG | 0.630056 | 2_4:+57961308 | Msa0337830:CDS |
| AGCGTGGTTTCCAAAGAAGA+GGG | 0.630586 | 2_4:+57960553 | Msa0337830:CDS |
| GTTGGAACTTCGTCAAGTCA+CGG | 0.634580 | 2_4:+57961000 | Msa0337830:CDS |
| AATCATTTGAGGATTGCCAA+AGG | 0.639694 | 2_4:+57960741 | Msa0337830:CDS |
| AATTTGAAAGCCAACTGAAG+GGG | 0.641010 | 2_4:+57961182 | Msa0337830:CDS |
| TAAACATGATGGAACACCGA+AGG | 0.645152 | 2_4:+57961726 | Msa0337830:CDS |
| GAAGCTCACAAGAAAATGCA+GGG | 0.647450 | 2_4:+57960875 | Msa0337830:CDS |
| TGCTCAGCACAAGATAGCTG+TGG | 0.658441 | 2_4:+57962363 | Msa0337830:three_prime_UTR |
| GAAGCAGCTTGATGGCCGAG+TGG | 0.673580 | 2_4:+57961135 | Msa0337830:CDS |
| TAGCATCAATAATCACAGCA+TGG | 0.675578 | 2_4:-57962112 | None:intergenic |
| AAAGGGTTAATCTTCGGTGA+CGG | 0.683323 | 2_4:-57962177 | None:intergenic |
| TTGACTTAAGCTCCTCCACG+CGG | 0.692205 | 2_4:-57961108 | None:intergenic |
| AAGGGGTTAGAACCAAAAGA+GGG | 0.694199 | 2_4:+57961325 | Msa0337830:CDS |
| TGGTCTCCCTTCTTACACCG+TGG | 0.716671 | 2_4:-57962092 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAACATTTAAATTTTAAA+TGG | + | chr2_4:57960447-57960466 | Msa0337830:CDS | 10.0% |
| !!! | TCATCAAAATATTTTATTAA+TGG | - | chr2_4:57961781-57961800 | None:intergenic | 10.0% |
| !!! | ATTAATAAAATATTTTGATG+AGG | + | chr2_4:57961780-57961799 | Msa0337830:CDS | 10.0% |
| !!! | ATTTTAATTTAGATATGGTT+TGG | + | chr2_4:57962427-57962446 | Msa0337830:intron | 15.0% |
| !!! | ATTAGTTATATTTTCCAATT+TGG | - | chr2_4:57962902-57962921 | None:intergenic | 15.0% |
| !! | ACAAACATTAAATAAATTCT+AGG | - | chr2_4:57963459-57963478 | None:intergenic | 15.0% |
| !! | AATTTATTTAATGTTTGTTC+TGG | + | chr2_4:57963461-57963480 | Msa0337830:intron | 15.0% |
| !! | TAGAAAAAACTTAATGTAAA+GGG | + | chr2_4:57963602-57963621 | Msa0337830:three_prime_UTR | 15.0% |
| !! | ATTTGTAGAAAAATCATTTG+AGG | + | chr2_4:57960730-57960749 | Msa0337830:CDS | 20.0% |
| !! | AAAAAGAAAATTAGTCATGT+TGG | + | chr2_4:57960842-57960861 | Msa0337830:CDS | 20.0% |
| !! | TCAAAAGAAAAGAAATTTGA+TGG | + | chr2_4:57961421-57961440 | Msa0337830:CDS | 20.0% |
| !!! | AAATATTTTGATGAGGAAAT+AGG | + | chr2_4:57961787-57961806 | Msa0337830:CDS | 20.0% |
| !! | ATCAACATTACTAAAAGAAA+TGG | - | chr2_4:57961861-57961880 | None:intergenic | 20.0% |
| !! | AGAAAATACTGAAAATTCTT+TGG | + | chr2_4:57962252-57962271 | Msa0337830:three_prime_UTR | 20.0% |
| !!! | CAGGTATTTTAATTTAGATA+TGG | + | chr2_4:57962422-57962441 | Msa0337830:intron | 20.0% |
| !! | TTGTGTATAATAGTGTTATA+AGG | + | chr2_4:57962963-57962982 | Msa0337830:intron | 20.0% |
| !! | TATAGTAGATATTTGTAACT+TGG | + | chr2_4:57963228-57963247 | Msa0337830:intron | 20.0% |
| !!! | TATTTCTTGCATTTTCTAAA+TGG | + | chr2_4:57963384-57963403 | Msa0337830:intron | 20.0% |
| !!! | ATTTTGTTGAGAATCTTATT+AGG | + | chr2_4:57963522-57963541 | Msa0337830:three_prime_UTR | 20.0% |
| !! | CTAGAAAAAACTTAATGTAA+AGG | + | chr2_4:57963601-57963620 | Msa0337830:three_prime_UTR | 20.0% |
| ! | AAATGATTTATCAGTTGACA+TGG | - | chr2_4:57960687-57960706 | None:intergenic | 25.0% |
| !!! | TTTCTTATTTTCTAGCTCTT+TGG | - | chr2_4:57960825-57960844 | None:intergenic | 25.0% |
| ! | AAAAATTGAAGAATGTGTCA+AGG | + | chr2_4:57960898-57960917 | Msa0337830:CDS | 25.0% |
| !! | AAAGAAGCAATTTAAAACCA+AGG | + | chr2_4:57961552-57961571 | Msa0337830:CDS | 25.0% |
| !!! | ATGTTTATTTAGCTTTGACT+CGG | - | chr2_4:57961713-57961732 | None:intergenic | 25.0% |
| ! | TCAAAGCTAAATAAACATGA+TGG | + | chr2_4:57961715-57961734 | Msa0337830:CDS | 25.0% |
| ! | TAACCTGATCTATATATATG+AGG | + | chr2_4:57961889-57961908 | Msa0337830:intron | 25.0% |
| ! | AACCTGATCTATATATATGA+GGG | + | chr2_4:57961890-57961909 | Msa0337830:intron | 25.0% |
| !!! | TATATCCTATTTTGAGAATG+TGG | + | chr2_4:57962691-57962710 | Msa0337830:intron | 25.0% |
| ! | ATAATAGTGTTATAAGGTTC+TGG | + | chr2_4:57962969-57962988 | Msa0337830:intron | 25.0% |
| ! | TAGATAGAAACATGAAGAAA+TGG | - | chr2_4:57963007-57963026 | None:intergenic | 25.0% |
| ! | TAATAGCAGATAGATAACAA+TGG | - | chr2_4:57963050-57963069 | None:intergenic | 25.0% |
| ! | ATTGTTATCTATCTGCTATT+AGG | + | chr2_4:57963049-57963068 | Msa0337830:intron | 25.0% |
| !!! | AATGAACCCTTTTAAGAAAT+AGG | + | chr2_4:57963117-57963136 | Msa0337830:intron | 25.0% |
| !! | AGTTGTCCTATTTCTTAAAA+GGG | - | chr2_4:57963126-57963145 | None:intergenic | 25.0% |
| ! | TTAAGAGAAAATTGACATCT+TGG | + | chr2_4:57963311-57963330 | Msa0337830:intron | 25.0% |
| ! | AAAAACTTAATGTAAAGGGA+CGG | + | chr2_4:57963606-57963625 | Msa0337830:three_prime_UTR | 25.0% |
| ! | TGAAAAATGTTCAAGAAGTT+GGG | - | chr2_4:57963660-57963679 | None:intergenic | 25.0% |
| ! | GATAAGCCAAATTTTTGTGT+TGG | + | chr2_4:57960416-57960435 | Msa0337830:CDS | 30.0% |
| TCATCTCCAACACAAAAATT+TGG | - | chr2_4:57960425-57960444 | None:intergenic | 30.0% | |
| TTTCTTCATCAAATCGTTCA+AGG | - | chr2_4:57960624-57960643 | None:intergenic | 30.0% | |
| ATCATCATCATATGATGTTG+GGG | - | chr2_4:57960657-57960676 | None:intergenic | 30.0% | |
| CATCATCATCATATGATGTT+GGG | - | chr2_4:57960658-57960677 | None:intergenic | 30.0% | |
| ACATCATCATCATATGATGT+TGG | - | chr2_4:57960659-57960678 | None:intergenic | 30.0% | |
| TTCCATAAAGAGAGATATTG+AGG | + | chr2_4:57960793-57960812 | Msa0337830:CDS | 30.0% | |
| GGATAACATTTCAAAACAGA+AGG | + | chr2_4:57961021-57961040 | Msa0337830:CDS | 30.0% | |
| GAAGAATTTAGAAATGCAAG+TGG | + | chr2_4:57961219-57961238 | Msa0337830:CDS | 30.0% | |
| ACAATCTCAAATCACAAGAA+AGG | + | chr2_4:57961242-57961261 | Msa0337830:CDS | 30.0% | |
| !! | TGTTTATTTAGCTTTGACTC+GGG | - | chr2_4:57961712-57961731 | None:intergenic | 30.0% |
| ! | ATATCCAGAACAATTTTTGC+TGG | - | chr2_4:57962053-57962072 | None:intergenic | 30.0% |
| TTACACAAAGGGTTAATCTT+CGG | - | chr2_4:57962186-57962205 | None:intergenic | 30.0% | |
| !!! | TGCGTCTTTTTTTACACAAA+GGG | - | chr2_4:57962197-57962216 | None:intergenic | 30.0% |
| !!! | ATGCGTCTTTTTTTACACAA+AGG | - | chr2_4:57962198-57962217 | None:intergenic | 30.0% |
| ! | GAAAATTCTTTGGTAGTTCT+TGG | + | chr2_4:57962262-57962281 | Msa0337830:three_prime_UTR | 30.0% |
| ! | TTTTGATGAAGATGAAGTCT+TGG | + | chr2_4:57962324-57962343 | Msa0337830:three_prime_UTR | 30.0% |
| AAGTTTATTTGCAAAACCCA+AGG | - | chr2_4:57962401-57962420 | None:intergenic | 30.0% | |
| ! | GGTTTTGCAAATAAACTTTC+AGG | + | chr2_4:57962403-57962422 | Msa0337830:three_prime_UTR | 30.0% |
| TTACATGTGTAACTCTTATG+AGG | + | chr2_4:57962550-57962569 | Msa0337830:intron | 30.0% | |
| !! | AACTCTTATGAGGTTTGTTA+TGG | + | chr2_4:57962560-57962579 | Msa0337830:intron | 30.0% |
| AGATTCCACATTCTCAAAAT+AGG | - | chr2_4:57962699-57962718 | None:intergenic | 30.0% | |
| ! | TTAGAACCGTGTTTGAAATA+TGG | + | chr2_4:57962718-57962737 | Msa0337830:intron | 30.0% |
| TGCAAACCATATTTCAAACA+CGG | - | chr2_4:57962727-57962746 | None:intergenic | 30.0% | |
| GAGAACTGAGTCATATTTAA+CGG | - | chr2_4:57962805-57962824 | None:intergenic | 30.0% | |
| ATCCATAATACAACACTACA+AGG | - | chr2_4:57962837-57962856 | None:intergenic | 30.0% | |
| ATGGATGATGAATTCTTAAG+TGG | + | chr2_4:57962851-57962870 | Msa0337830:intron | 30.0% | |
| !! | TACATTGAGTTGAACATAAG+TGG | + | chr2_4:57962874-57962893 | Msa0337830:intron | 30.0% |
| TGTGTAAAATGAGACAGTAA+AGG | + | chr2_4:57963084-57963103 | Msa0337830:intron | 30.0% | |
| ! | GAGTTGTCCTATTTCTTAAA+AGG | - | chr2_4:57963127-57963146 | None:intergenic | 30.0% |
| ATGATAAGTACAAACTATGC+AGG | + | chr2_4:57963180-57963199 | Msa0337830:intron | 30.0% | |
| ACAAATGATAGAACTGTTAG+CGG | - | chr2_4:57963292-57963311 | None:intergenic | 30.0% | |
| GCAAGAAATACATAAAAGAC+AGG | - | chr2_4:57963374-57963393 | None:intergenic | 30.0% | |
| ! | GCATTTTCTAAATGGTTTGA+AGG | + | chr2_4:57963392-57963411 | Msa0337830:intron | 30.0% |
| AACAAAAAACCAAAGCAGAT+TGG | - | chr2_4:57963435-57963454 | None:intergenic | 30.0% | |
| !! | AATTTGTTGTGCTTGTTACT+TGG | + | chr2_4:57963552-57963571 | Msa0337830:three_prime_UTR | 30.0% |
| GAAAAATGTTCAAGAAGTTG+GGG | - | chr2_4:57963659-57963678 | None:intergenic | 30.0% | |
| GTGAAAAATGTTCAAGAAGT+TGG | - | chr2_4:57963661-57963680 | None:intergenic | 30.0% | |
| GATTCAAAGTCTTGACGAAA+AGG | - | chr2_4:57960506-57960525 | None:intergenic | 35.0% | |
| !! | ATAATGTTCCTTTGATAGCG+TGG | + | chr2_4:57960537-57960556 | Msa0337830:CDS | 35.0% |
| TTATCAGATACCCTCTTAAC+AGG | - | chr2_4:57960593-57960612 | None:intergenic | 35.0% | |
| CGATTTGATGAAGAAATCCA+AGG | + | chr2_4:57960628-57960647 | Msa0337830:CDS | 35.0% | |
| AATCATTTGAGGATTGCCAA+AGG | + | chr2_4:57960741-57960760 | Msa0337830:CDS | 35.0% | |
| CTCCTCAATATCTCTCTTTA+TGG | - | chr2_4:57960798-57960817 | None:intergenic | 35.0% | |
| ! | TGTCAAGGATTTTGTAGCAA+AGG | + | chr2_4:57960913-57960932 | Msa0337830:CDS | 35.0% |
| ! | AAGGATTTTGTAGCAAAGGA+TGG | + | chr2_4:57960917-57960936 | Msa0337830:CDS | 35.0% |
| AGAACTCAAGACAAAAGAGT+TGG | + | chr2_4:57960982-57961001 | Msa0337830:CDS | 35.0% | |
| AGAATTTGAAAGCCAACTGA+AGG | + | chr2_4:57961180-57961199 | Msa0337830:CDS | 35.0% | |
| GAATTTGAAAGCCAACTGAA+GGG | + | chr2_4:57961181-57961200 | Msa0337830:CDS | 35.0% | |
| AATTTGAAAGCCAACTGAAG+GGG | + | chr2_4:57961182-57961201 | Msa0337830:CDS | 35.0% | |
| TCACAAGAAAGGCAATTGAA+AGG | + | chr2_4:57961253-57961272 | Msa0337830:CDS | 35.0% | |
| GCAATTGAAAGGACAAGTTA+AGG | + | chr2_4:57961264-57961283 | Msa0337830:CDS | 35.0% | |
| ! | GAAATTTGATGGACAAGTGA+AGG | + | chr2_4:57961432-57961451 | Msa0337830:CDS | 35.0% |
| ! | TAAATTCCTCCTCTTTTGAC+TGG | - | chr2_4:57961462-57961481 | None:intergenic | 35.0% |
| GGAATTTAACAGTCAAGTGA+AGG | + | chr2_4:57961474-57961493 | Msa0337830:CDS | 35.0% | |
| ! | GAAGGAGTTTAAAACGAAGA+AGG | + | chr2_4:57961492-57961511 | Msa0337830:CDS | 35.0% |
| ! | TGATTTGAAGTACTCAACCT+TGG | - | chr2_4:57961572-57961591 | None:intergenic | 35.0% |
| ACTCAAGTTAAAAGAGAAGC+AGG | + | chr2_4:57961666-57961685 | Msa0337830:CDS | 35.0% | |
| ! | TTAAAAGAGAAGCAGGTTGA+AGG | + | chr2_4:57961673-57961692 | Msa0337830:CDS | 35.0% |
| ! | TATTGTTTCTCTGTCAACTC+AGG | - | chr2_4:57961754-57961773 | None:intergenic | 35.0% |
| TTTGATGAGGAAATAGGATC+TGG | + | chr2_4:57961793-57961812 | Msa0337830:CDS | 35.0% | |
| CTCCCTCATATATATAGATC+AGG | - | chr2_4:57961895-57961914 | None:intergenic | 35.0% | |
| TAATGCAGCTACATCTTACA+TGG | + | chr2_4:57961932-57961951 | Msa0337830:intron | 35.0% | |
| ATACTTGTTTCATCAGTGGT+TGG | - | chr2_4:57961972-57961991 | None:intergenic | 35.0% | |
| GAATGTCAGTTTCATCACTT+GGG | - | chr2_4:57962004-57962023 | None:intergenic | 35.0% | |
| AGAATGTCAGTTTCATCACT+TGG | - | chr2_4:57962005-57962024 | None:intergenic | 35.0% | |
| AGATCCAGCAAAAATTGTTC+TGG | + | chr2_4:57962046-57962065 | Msa0337830:CDS | 35.0% | |
| TACTGAACCCAATTATTCCA+CGG | + | chr2_4:57962075-57962094 | Msa0337830:CDS | 35.0% | |
| TCTTACACCGTGGAATAATT+GGG | - | chr2_4:57962085-57962104 | None:intergenic | 35.0% | |
| TTCTTACACCGTGGAATAAT+TGG | - | chr2_4:57962086-57962105 | None:intergenic | 35.0% | |
| AATTATTCCACGGTGTAAGA+AGG | + | chr2_4:57962085-57962104 | Msa0337830:CDS | 35.0% | |
| ATTATTCCACGGTGTAAGAA+GGG | + | chr2_4:57962086-57962105 | Msa0337830:CDS | 35.0% | |
| TAGCATCAATAATCACAGCA+TGG | - | chr2_4:57962115-57962134 | None:intergenic | 35.0% | |
| CATGTGTAACTCTTCTTTGA+AGG | + | chr2_4:57962521-57962540 | Msa0337830:intron | 35.0% | |
| ! | TGTAACTCTTCTTTGAAGGA+AGG | + | chr2_4:57962525-57962544 | Msa0337830:intron | 35.0% |
| ! | CTGTTTTCGTAATTGATGTC+TGG | + | chr2_4:57962759-57962778 | Msa0337830:intron | 35.0% |
| !! | GTAATTGATGTCTGGTTCTT+TGG | + | chr2_4:57962767-57962786 | Msa0337830:intron | 35.0% |
| !! | TCTGGTTCTTTGGATGAAAA+TGG | + | chr2_4:57962777-57962796 | Msa0337830:intron | 35.0% |
| TAAATATGACTCAGTTCTCC+TGG | + | chr2_4:57962806-57962825 | Msa0337830:intron | 35.0% | |
| GTCCTTGTAGTGTTGTATTA+TGG | + | chr2_4:57962832-57962851 | Msa0337830:intron | 35.0% | |
| GAACATAAGTGGAACCAAAT+TGG | + | chr2_4:57962885-57962904 | Msa0337830:intron | 35.0% | |
| ATCTATCTGCTATTAGGATG+AGG | + | chr2_4:57963055-57963074 | Msa0337830:intron | 35.0% | |
| TGAAATTGAACTCGCGTAAT+TGG | + | chr2_4:57963253-57963272 | Msa0337830:intron | 35.0% | |
| TTATTCAGTCCAATCTGCTT+TGG | + | chr2_4:57963423-57963442 | Msa0337830:intron | 35.0% | |
| GATTCTCAACAAAATCTGCA+AGG | - | chr2_4:57963517-57963536 | None:intergenic | 35.0% | |
| TTTGGAAACCACGCTATCAA+AGG | - | chr2_4:57960548-57960567 | None:intergenic | 40.0% | |
| GTGATAGTATCCCTCTTCTT+TGG | - | chr2_4:57960566-57960585 | None:intergenic | 40.0% | |
| TATCACACTGCCTGTTAAGA+GGG | + | chr2_4:57960580-57960599 | Msa0337830:CDS | 40.0% | |
| GATTTATCAGTTGACATGGC+AGG | - | chr2_4:57960683-57960702 | None:intergenic | 40.0% | |
| TGCAAGTTCTTTCTTGAGTG+AGG | - | chr2_4:57960711-57960730 | None:intergenic | 40.0% | |
| ATTTGAGGATTGCCAAAGGA+CGG | + | chr2_4:57960745-57960764 | Msa0337830:CDS | 40.0% | |
| GAAGCTCACAAGAAAATGCA+GGG | + | chr2_4:57960875-57960894 | Msa0337830:CDS | 40.0% | |
| AAAGGATGGACAGCTCTATT+TGG | + | chr2_4:57960931-57960950 | Msa0337830:CDS | 40.0% | |
| GGAATTTGAAAGCGAAGTGA+AGG | + | chr2_4:57961042-57961061 | Msa0337830:CDS | 40.0% | |
| GAAGGAGCTAGTGAATGATT+TGG | + | chr2_4:57961060-57961079 | Msa0337830:CDS | 40.0% | |
| TCAAAAGAGAAGCAGCTTGA+TGG | + | chr2_4:57961127-57961146 | Msa0337830:CDS | 40.0% | |
| TTGATTCATGTTCCTCCACT+CGG | - | chr2_4:57961153-57961172 | None:intergenic | 40.0% | |
| CAACTTGATGTCCAAGTGAA+GGG | + | chr2_4:57961307-57961326 | Msa0337830:CDS | 40.0% | |
| AACTTGATGTCCAAGTGAAG+GGG | + | chr2_4:57961308-57961327 | Msa0337830:CDS | 40.0% | |
| AAGGGGTTAGAACCAAAAGA+GGG | + | chr2_4:57961325-57961344 | Msa0337830:CDS | 40.0% | |
| ! | CCTTCAAATTCACCCTCTTT+TGG | - | chr2_4:57961340-57961359 | None:intergenic | 40.0% |
| CCAAAAGAGGGTGAATTTGA+AGG | + | chr2_4:57961337-57961356 | Msa0337830:CDS | 40.0% | |
| ! | GGAGTTTAAAACGAAGAAGG+AGG | + | chr2_4:57961495-57961514 | Msa0337830:CDS | 40.0% |
| ACGAAGAAGGAGGAATTCAA+AGG | + | chr2_4:57961505-57961524 | Msa0337830:CDS | 40.0% | |
| AGAAGGAGGAATTCAAAGGT+CGG | + | chr2_4:57961509-57961528 | Msa0337830:CDS | 40.0% | |
| CGAAGCAATTTGAAGAACGA+TGG | + | chr2_4:57961596-57961615 | Msa0337830:CDS | 40.0% | |
| ! | TAAACATGATGGAACACCGA+AGG | + | chr2_4:57961726-57961745 | Msa0337830:CDS | 40.0% |
| CTGCATACTTGTTTCATCAG+TGG | - | chr2_4:57961976-57961995 | None:intergenic | 40.0% | |
| AGCGACATCAATAATCATGC+TGG | + | chr2_4:57962134-57962153 | Msa0337830:CDS | 40.0% | |
| AAAGGGTTAATCTTCGGTGA+CGG | - | chr2_4:57962180-57962199 | None:intergenic | 40.0% | |
| AGATAGCTGTGGAACTGTTT+CGG | + | chr2_4:57962374-57962393 | Msa0337830:three_prime_UTR | 40.0% | |
| AGCATCTAACACTTGCAATC+TGG | - | chr2_4:57962600-57962619 | None:intergenic | 40.0% | |
| AGCAGATAGATAACAATGGC+AGG | - | chr2_4:57963046-57963065 | None:intergenic | 40.0% | |
| TATCTGCTATTAGGATGAGG+TGG | + | chr2_4:57963058-57963077 | Msa0337830:intron | 40.0% | |
| !! | GACATCTTGGTGCTAATGAT+TGG | + | chr2_4:57963324-57963343 | Msa0337830:intron | 40.0% |
| AACTTAATGTAAAGGGACGG+AGG | + | chr2_4:57963609-57963628 | Msa0337830:three_prime_UTR | 40.0% | |
| ACTTAATGTAAAGGGACGGA+GGG | + | chr2_4:57963610-57963629 | Msa0337830:three_prime_UTR | 40.0% | |
| TAGCGTGGTTTCCAAAGAAG+AGG | + | chr2_4:57960552-57960571 | Msa0337830:CDS | 45.0% | |
| AGCGTGGTTTCCAAAGAAGA+GGG | + | chr2_4:57960553-57960572 | Msa0337830:CDS | 45.0% | |
| CTATCACACTGCCTGTTAAG+AGG | + | chr2_4:57960579-57960598 | Msa0337830:CDS | 45.0% | |
| ATATGATGTTGGGGACACCT+TGG | - | chr2_4:57960648-57960667 | None:intergenic | 45.0% | |
| TTTCTATTTGCGCCGTCCTT+TGG | - | chr2_4:57960760-57960779 | None:intergenic | 45.0% | |
| AAGGACGGCGCAAATAGAAA+AGG | + | chr2_4:57960760-57960779 | Msa0337830:CDS | 45.0% | |
| CGAAGCTCACAAGAAAATGC+AGG | + | chr2_4:57960874-57960893 | Msa0337830:CDS | 45.0% | |
| GTTGGAACTTCGTCAAGTCA+CGG | + | chr2_4:57961000-57961019 | Msa0337830:CDS | 45.0% | |
| TAGATTCTAGCCCCTTCAGT+TGG | - | chr2_4:57961195-57961214 | None:intergenic | 45.0% | |
| GCAACTTGATGTCCAAGTGA+AGG | + | chr2_4:57961306-57961325 | Msa0337830:CDS | 45.0% | |
| !! | TTGGTTCTAACCCCTTCACT+TGG | - | chr2_4:57961321-57961340 | None:intergenic | 45.0% |
| GAAGGGGTTAGAACCAAAAG+AGG | + | chr2_4:57961324-57961343 | Msa0337830:CDS | 45.0% | |
| AGAGGGTGAATTTGAAGGCA+AGG | + | chr2_4:57961342-57961361 | Msa0337830:CDS | 45.0% | |
| GCATTTCAAGAGCCAACTGA+AGG | + | chr2_4:57961390-57961409 | Msa0337830:CDS | 45.0% | |
| ! | TTGATTCGAGCTCCTTCAGT+TGG | - | chr2_4:57961405-57961424 | None:intergenic | 45.0% |
| GAAGGAGTTCCAGTCAAAAG+AGG | + | chr2_4:57961450-57961469 | Msa0337830:CDS | 45.0% | |
| GAAGGAGGAATTCAAAGGTC+GGG | + | chr2_4:57961510-57961529 | Msa0337830:CDS | 45.0% | |
| GGATGGACAGCTCTATTTGG+TGG | + | chr2_4:57960934-57960953 | Msa0337830:CDS | 50.0% | |
| ! | TGGACAGCTCTATTTGGTGG+AGG | + | chr2_4:57960937-57960956 | Msa0337830:CDS | 50.0% |
| !! | GAAGCATTTTGAAAGCCGCG+TGG | + | chr2_4:57961093-57961112 | Msa0337830:CDS | 50.0% |
| TTGACTTAAGCTCCTCCACG+CGG | - | chr2_4:57961111-57961130 | None:intergenic | 50.0% | |
| TGAAGGCAAGGTGAAGAAGC+TGG | + | chr2_4:57961354-57961373 | Msa0337830:CDS | 50.0% | |
| GGAGTTCCAGTCAAAAGAGG+AGG | + | chr2_4:57961453-57961472 | Msa0337830:CDS | 50.0% | |
| TCTGTCAACTCAGGCTCCTT+CGG | - | chr2_4:57961745-57961764 | None:intergenic | 50.0% | |
| TGCTCAGCACAAGATAGCTG+TGG | + | chr2_4:57962363-57962382 | Msa0337830:three_prime_UTR | 50.0% | |
| TGTGGAACTGTTTCGGACCT+TGG | + | chr2_4:57962381-57962400 | Msa0337830:three_prime_UTR | 50.0% | |
| GTGGAACTGTTTCGGACCTT+GGG | + | chr2_4:57962382-57962401 | Msa0337830:three_prime_UTR | 50.0% | |
| CAACACTACAAGGACACTCC+AGG | - | chr2_4:57962827-57962846 | None:intergenic | 50.0% | |
| !! | GCATTTTGAAAGCCGCGTGG+AGG | + | chr2_4:57961096-57961115 | Msa0337830:CDS | 55.0% |
| ! | GCAGGTTGAAGGAGAAGTCG+AGG | + | chr2_4:57961684-57961703 | Msa0337830:CDS | 55.0% |
| TGGTCTCCCTTCTTACACCG+TGG | - | chr2_4:57962095-57962114 | None:intergenic | 55.0% | |
| ! | GAAGCAGCTTGATGGCCGAG+TGG | + | chr2_4:57961135-57961154 | Msa0337830:CDS | 60.0% |
| ! | GCAGCTTGATGGCCGAGTGG+AGG | + | chr2_4:57961138-57961157 | Msa0337830:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 57960398 | 57963700 | 57960398 | ID=Msa0337830;Name=Msa0337830 |
| chr2_4 | mRNA | 57960398 | 57963700 | 57960398 | ID=Msa0337830-mRNA-1;Parent=Msa0337830;Name=Msa0337830-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|1|0.66|1|1|0.66|3|410|556 |
| chr2_4 | exon | 57960398 | 57961814 | 57960398 | ID=Msa0337830-mRNA-1:exon:17681;Parent=Msa0337830-mRNA-1 |
| chr2_4 | exon | 57961940 | 57962424 | 57961940 | ID=Msa0337830-mRNA-1:exon:17682;Parent=Msa0337830-mRNA-1 |
| chr2_4 | exon | 57963522 | 57963700 | 57963522 | ID=Msa0337830-mRNA-1:exon:17683;Parent=Msa0337830-mRNA-1 |
| chr2_4 | CDS | 57960398 | 57961814 | 57960398 | ID=Msa0337830-mRNA-1:cds;Parent=Msa0337830-mRNA-1 |
| chr2_4 | CDS | 57961940 | 57962193 | 57961940 | ID=Msa0337830-mRNA-1:cds;Parent=Msa0337830-mRNA-1 |
| chr2_4 | three_prime_UTR | 57962194 | 57962424 | 57962194 | ID=Msa0337830-mRNA-1:three_prime_utr;Parent=Msa0337830-mRNA-1 |
| chr2_4 | three_prime_UTR | 57963522 | 57963700 | 57963522 | ID=Msa0337830-mRNA-1:three_prime_utr;Parent=Msa0337830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
