Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263030 | KEH39291.1 | 87.211 | 563 | 40 | 3 | 1 | 561 | 1 | 533 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263030 | A0A072VCH1 | 87.211 | 563 | 40 | 3 | 1 | 561 | 1 | 533 | 0.0 | 942 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0221430 | Msa0263030 | 0.860230 | 2.387391e-63 | -8.615850e-47 |
| Msa0263030 | Msa0337830 | 0.896667 | 2.961619e-76 | -8.615850e-47 |
| Msa0263030 | Msa0913110 | 0.800496 | 1.402438e-48 | -8.615850e-47 |
| Msa0263030 | Msa0989280 | 0.822110 | 2.822241e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263030 | MtrunA17_Chr2g0325781 | 91.447 | 304 | 24 | 1 | 1 | 302 | 1 | 304 | 0.0 | 551 |
| Msa0263030 | MtrunA17_Chr2g0325701 | 53.356 | 581 | 172 | 6 | 3 | 554 | 4 | 514 | 1.69e-171 | 499 |
| Msa0263030 | MtrunA17_Chr2g0325691 | 59.381 | 485 | 171 | 6 | 1 | 460 | 1 | 484 | 8.59e-159 | 471 |
| Msa0263030 | MtrunA17_Chr2g0325691 | 40.519 | 501 | 188 | 14 | 66 | 477 | 250 | 729 | 3.60e-67 | 231 |
| Msa0263030 | MtrunA17_Chr2g0325691 | 33.143 | 350 | 209 | 6 | 58 | 382 | 368 | 717 | 2.75e-23 | 104 |
| Msa0263030 | MtrunA17_Chr2g0325231 | 51.731 | 520 | 202 | 9 | 1 | 481 | 2 | 511 | 1.44e-134 | 413 |
| Msa0263030 | MtrunA17_Chr2g0325231 | 53.137 | 510 | 203 | 10 | 66 | 557 | 304 | 795 | 7.83e-133 | 409 |
| Msa0263030 | MtrunA17_Chr2g0325661 | 41.560 | 705 | 263 | 16 | 1 | 560 | 1 | 701 | 9.61e-131 | 403 |
| Msa0263030 | MtrunA17_Chr6g0471251 | 44.888 | 626 | 234 | 14 | 1 | 554 | 2 | 588 | 1.67e-125 | 386 |
| Msa0263030 | MtrunA17_Chr2g0325711 | 42.270 | 608 | 233 | 11 | 57 | 551 | 53 | 655 | 1.23e-113 | 357 |
| Msa0263030 | MtrunA17_Chr2g0325351 | 44.054 | 597 | 202 | 14 | 1 | 554 | 2 | 509 | 8.08e-113 | 351 |
| Msa0263030 | MtrunA17_Chr2g0325811 | 43.235 | 680 | 234 | 19 | 1 | 551 | 1 | 657 | 3.63e-110 | 348 |
| Msa0263030 | MtrunA17_Chr2g0325621 | 46.374 | 524 | 208 | 9 | 46 | 552 | 13 | 480 | 1.17e-108 | 339 |
| Msa0263030 | MtrunA17_Chr7g0235901 | 61.613 | 310 | 118 | 1 | 80 | 389 | 1 | 309 | 3.99e-107 | 323 |
| Msa0263030 | MtrunA17_Chr2g0325321 | 38.808 | 688 | 251 | 16 | 41 | 561 | 3 | 687 | 1.60e-105 | 334 |
| Msa0263030 | MtrunA17_Chr2g0325221 | 42.053 | 604 | 210 | 15 | 1 | 471 | 1 | 597 | 7.76e-99 | 315 |
| Msa0263030 | MtrunA17_Chr2g0325741 | 55.016 | 309 | 88 | 6 | 1 | 258 | 2 | 310 | 6.35e-95 | 292 |
| Msa0263030 | MtrunA17_Chr5g0416271 | 42.996 | 514 | 174 | 10 | 41 | 554 | 12 | 406 | 3.48e-93 | 294 |
| Msa0263030 | MtrunA17_Chr2g0325861 | 54.155 | 349 | 135 | 4 | 206 | 554 | 420 | 743 | 2.57e-91 | 299 |
| Msa0263030 | MtrunA17_Chr2g0325861 | 41.006 | 517 | 245 | 12 | 1 | 477 | 2 | 498 | 2.32e-77 | 261 |
| Msa0263030 | MtrunA17_Chr2g0325761 | 39.130 | 621 | 225 | 14 | 1 | 476 | 1 | 613 | 3.07e-87 | 284 |
| Msa0263030 | MtrunA17_Chr2g0333341 | 35.880 | 602 | 262 | 11 | 1 | 551 | 1 | 529 | 5.77e-84 | 274 |
| Msa0263030 | MtrunA17_Chr2g0280141 | 37.329 | 584 | 238 | 10 | 90 | 554 | 65 | 639 | 3.97e-80 | 268 |
| Msa0263030 | MtrunA17_Chr2g0325361 | 44.989 | 469 | 187 | 9 | 98 | 551 | 483 | 895 | 1.04e-79 | 271 |
| Msa0263030 | MtrunA17_Chr2g0325361 | 36.711 | 523 | 246 | 13 | 40 | 481 | 2 | 520 | 8.24e-61 | 218 |
| Msa0263030 | MtrunA17_Chr2g0325361 | 41.899 | 358 | 157 | 8 | 129 | 444 | 363 | 711 | 2.75e-50 | 187 |
| Msa0263030 | MtrunA17_Chr2g0325361 | 44.776 | 268 | 114 | 5 | 215 | 464 | 424 | 675 | 8.03e-42 | 161 |
| Msa0263030 | MtrunA17_Chr2g0325611 | 47.956 | 367 | 153 | 9 | 203 | 560 | 78 | 415 | 7.96e-72 | 241 |
| Msa0263030 | MtrunA17_Chr2g0325611 | 39.189 | 222 | 103 | 3 | 157 | 349 | 92 | 310 | 3.86e-24 | 106 |
| Msa0263030 | MtrunA17_Chr2g0325611 | 30.721 | 319 | 167 | 10 | 44 | 335 | 19 | 310 | 5.57e-15 | 78.2 |
| Msa0263030 | MtrunA17_Chr2g0325281 | 36.167 | 600 | 219 | 15 | 41 | 477 | 3 | 601 | 4.71e-71 | 239 |
| Msa0263030 | MtrunA17_Chr2g0325721 | 37.476 | 531 | 238 | 11 | 1 | 467 | 1 | 501 | 3.49e-69 | 231 |
| Msa0263030 | MtrunA17_Chr2g0325241 | 43.251 | 363 | 133 | 6 | 214 | 558 | 120 | 427 | 9.90e-62 | 209 |
| Msa0263030 | MtrunA17_Chr2g0325651 | 39.558 | 407 | 202 | 12 | 1 | 385 | 2 | 386 | 9.00e-61 | 206 |
| Msa0263030 | MtrunA17_Chr2g0325651 | 32.000 | 275 | 166 | 5 | 224 | 477 | 113 | 387 | 3.09e-17 | 84.0 |
| Msa0263030 | MtrunA17_Chr2g0325641 | 47.095 | 327 | 115 | 8 | 191 | 476 | 7 | 316 | 2.80e-54 | 187 |
| Msa0263030 | MtrunA17_Chr2g0325641 | 38.846 | 260 | 135 | 5 | 225 | 481 | 1 | 239 | 7.37e-27 | 111 |
| Msa0263030 | MtrunA17_Chr2g0325641 | 32.198 | 323 | 124 | 8 | 131 | 377 | 4 | 307 | 1.03e-14 | 75.5 |
| Msa0263030 | MtrunA17_Chr2g0325261 | 39.437 | 355 | 147 | 10 | 1 | 337 | 2 | 306 | 3.35e-50 | 175 |
| Msa0263030 | MtrunA17_Chr2g0325341 | 39.437 | 355 | 147 | 10 | 1 | 337 | 2 | 306 | 3.35e-50 | 175 |
| Msa0263030 | MtrunA17_Chr2g0325771 | 88.889 | 90 | 10 | 0 | 472 | 561 | 12 | 101 | 2.84e-48 | 166 |
| Msa0263030 | MtrunA17_Chr5g0434741 | 37.798 | 336 | 162 | 8 | 1 | 321 | 1 | 304 | 5.78e-47 | 166 |
| Msa0263030 | MtrunA17_Chr2g0325751 | 60.784 | 153 | 53 | 1 | 332 | 484 | 2 | 147 | 2.28e-46 | 160 |
| Msa0263030 | MtrunA17_Chr2g0325751 | 38.168 | 131 | 60 | 1 | 237 | 367 | 5 | 114 | 8.11e-13 | 66.6 |
| Msa0263030 | MtrunA17_Chr2g0325751 | 40.496 | 121 | 65 | 1 | 221 | 341 | 3 | 116 | 2.06e-12 | 65.5 |
| Msa0263030 | MtrunA17_Chr5g0434751 | 49.819 | 277 | 113 | 4 | 196 | 457 | 3 | 268 | 1.99e-44 | 159 |
| Msa0263030 | MtrunA17_Chr5g0434751 | 34.701 | 268 | 141 | 7 | 143 | 389 | 2 | 256 | 1.84e-18 | 86.3 |
| Msa0263030 | MtrunA17_Chr5g0434751 | 40.000 | 185 | 69 | 3 | 295 | 437 | 1 | 185 | 1.77e-17 | 83.2 |
| Msa0263030 | MtrunA17_Chr5g0434751 | 34.524 | 252 | 142 | 7 | 114 | 353 | 22 | 262 | 3.31e-12 | 67.4 |
| Msa0263030 | MtrunA17_Chr2g0325801 | 53.704 | 162 | 38 | 2 | 1 | 162 | 2 | 126 | 2.87e-39 | 139 |
| Msa0263030 | MtrunA17_Chr2g0332961 | 43.678 | 261 | 94 | 5 | 324 | 554 | 67 | 304 | 1.59e-38 | 145 |
| Msa0263030 | MtrunA17_Chr2g0332961 | 34.921 | 252 | 129 | 7 | 63 | 306 | 4 | 228 | 3.48e-22 | 98.2 |
| Msa0263030 | MtrunA17_Chr2g0325791 | 52.027 | 148 | 57 | 2 | 194 | 341 | 23 | 156 | 5.35e-30 | 120 |
| Msa0263030 | MtrunA17_Chr2g0325201 | 39.669 | 242 | 128 | 4 | 149 | 389 | 2 | 226 | 8.38e-30 | 117 |
| Msa0263030 | MtrunA17_Chr2g0332951 | 52.756 | 127 | 53 | 2 | 427 | 552 | 5 | 125 | 1.00e-23 | 99.4 |
| Msa0263030 | MtrunA17_Chr3g0140581 | 42.342 | 111 | 64 | 0 | 103 | 213 | 1 | 111 | 2.75e-19 | 85.1 |
| Msa0263030 | MtrunA17_Chr4g0044221 | 51.304 | 115 | 42 | 4 | 450 | 554 | 170 | 280 | 3.63e-19 | 88.6 |
| Msa0263030 | MtrunA17_Chr4g0044221 | 34.848 | 198 | 105 | 6 | 127 | 319 | 15 | 193 | 3.52e-13 | 70.9 |
| Msa0263030 | MtrunA17_Chr2g0325331 | 48.485 | 99 | 41 | 2 | 477 | 567 | 1 | 97 | 4.16e-19 | 85.1 |
| Msa0263030 | MtrunA17_Chr2g0325631 | 52.688 | 93 | 34 | 2 | 477 | 561 | 1 | 91 | 2.17e-18 | 85.5 |
| Msa0263030 | MtrunA17_Chr5g0434761 | 52.688 | 93 | 34 | 2 | 477 | 561 | 1 | 91 | 4.28e-18 | 84.7 |
| Msa0263030 | MtrunA17_Chr3g0140591 | 50.000 | 90 | 36 | 2 | 473 | 554 | 5 | 93 | 3.88e-17 | 79.3 |
| Msa0263030 | MtrunA17_Chr2g0325211 | 39.151 | 212 | 105 | 4 | 290 | 500 | 2 | 190 | 7.43e-16 | 76.3 |
| Msa0263030 | MtrunA17_Chr2g0325211 | 36.646 | 161 | 98 | 1 | 234 | 394 | 2 | 158 | 1.20e-13 | 69.7 |
| Msa0263030 | MtrunA17_Chr2g0325211 | 36.683 | 199 | 92 | 4 | 248 | 444 | 2 | 168 | 1.83e-12 | 66.2 |
| Msa0263030 | MtrunA17_Chr2g0325291 | 55.556 | 72 | 24 | 1 | 491 | 554 | 1 | 72 | 1.38e-14 | 73.6 |
| Msa0263030 | MtrunA17_Chr2g0325731 | 60.345 | 58 | 23 | 0 | 239 | 296 | 1 | 58 | 1.75e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 113 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTACACCGTGGAATAAT+TGG | 0.126685 | 2_2:-62088731 | None:intergenic |
| CTCCTCAATATCTCTCTTTA+TGG | 0.161451 | 2_2:-62087443 | None:intergenic |
| CCTTCAAATTCACCCTCTTT+TGG | 0.208741 | 2_2:-62087985 | None:intergenic |
| AGAAAATACTGAAAATTCTT+TGG | 0.285376 | 2_2:+62088896 | Msa0263030:three_prime_UTR |
| GTGATAGTATCCCTCTTCTT+TGG | 0.305836 | 2_2:-62087211 | None:intergenic |
| TTATCAGATACCCTCTTAAC+AGG | 0.329148 | 2_2:-62087238 | None:intergenic |
| AAAGGATGGACAGCTCTATT+TGG | 0.335172 | 2_2:+62087579 | Msa0263030:CDS |
| TTTCTATTTGCGCCGTCCTT+TGG | 0.346892 | 2_2:-62087405 | None:intergenic |
| GAAAATTCTTTGGTAGTTGT+TGG | 0.385636 | 2_2:+62088906 | Msa0263030:three_prime_UTR |
| TGTGGAACTGTTTCGGACCT+TGG | 0.386640 | 2_2:+62089025 | Msa0263030:three_prime_UTR |
| GTGGAACTGTTTCGGACCTT+GGG | 0.387084 | 2_2:+62089026 | Msa0263030:three_prime_UTR |
| TCAAAAGAAAAGAAATTTGA+TGG | 0.390578 | 2_2:+62088069 | Msa0263030:CDS |
| CATCATCATCATATGATGTT+GGG | 0.391874 | 2_2:-62087303 | None:intergenic |
| TTTGATGAGGAAATAGAATC+TGG | 0.392675 | 2_2:+62088441 | Msa0263030:CDS |
| TCTGTCAACTCAGGCTCCTT+CGG | 0.393500 | 2_2:-62088390 | None:intergenic |
| CTATCACACTGCCTGTTAAG+AGG | 0.418465 | 2_2:+62087227 | Msa0263030:CDS |
| AGATAGCTGTGGAACTGTTT+CGG | 0.421798 | 2_2:+62089018 | Msa0263030:three_prime_UTR |
| TCAAAAGAGAAGCAGCTTGA+TGG | 0.422948 | 2_2:+62087775 | Msa0263030:CDS |
| AATTTGTTGTGCTTGTTACT+TGG | 0.424201 | 2_2:+62090170 | Msa0263030:three_prime_UTR |
| GAAAGACTCTGGTCAAGTTA+AGG | 0.433787 | 2_2:-62090300 | None:intergenic |
| TCTTACACCGTGGAATAATT+GGG | 0.440368 | 2_2:-62088730 | None:intergenic |
| GAATCAAAGTCTTGAAGAAA+AGG | 0.443610 | 2_2:-62087151 | None:intergenic |
| TTTCTTCATCAAACCGTTCA+AGG | 0.449573 | 2_2:-62087269 | None:intergenic |
| GAAGGAGCTAGTGAATGATT+TGG | 0.455266 | 2_2:+62087708 | Msa0263030:CDS |
| TTACACAAAGGGTTAATCTT+CGG | 0.458961 | 2_2:-62088827 | None:intergenic |
| TTGATTCGAGCTCCTTCAGT+TGG | 0.476903 | 2_2:-62088050 | None:intergenic |
| ACATCATCATCATATGATGT+TGG | 0.479570 | 2_2:-62087304 | None:intergenic |
| ACTCAAGTTAAAAGAGAAGC+AGG | 0.485078 | 2_2:+62088314 | Msa0263030:CDS |
| GCAATTGAAAGGACAAGTTA+AGG | 0.485918 | 2_2:+62087912 | Msa0263030:CDS |
| TGCTAGCGACATCATTCTGT+TGG | 0.485919 | 2_2:+62088778 | Msa0263030:CDS |
| AGAATGTCAGTTTCATCACT+TGG | 0.487761 | 2_2:-62088650 | None:intergenic |
| AATTATTCCACGGTGTAAGA+AGG | 0.490364 | 2_2:+62088733 | Msa0263030:CDS |
| TATTGTTTCTCTGTCAACTC+AGG | 0.490786 | 2_2:-62088399 | None:intergenic |
| GGAATTCAAAGGTCGGGTTA+AGG | 0.495649 | 2_2:+62088164 | Msa0263030:CDS |
| TTGATTCATGTTCCTCCACT+CGG | 0.496273 | 2_2:-62087798 | None:intergenic |
| TTAAAAGAGAAGCAGGTTGA+AGG | 0.496390 | 2_2:+62088321 | Msa0263030:CDS |
| GAAGGAGTTTAAAACGAAGA+AGG | 0.497526 | 2_2:+62088140 | Msa0263030:CDS |
| TGTTTATTTAGCTTTGACTC+GGG | 0.498384 | 2_2:-62088357 | None:intergenic |
| TAGTTCAATAATGGATATTG+AGG | 0.501636 | 2_2:+62087036 | None:intergenic |
| TGCAAGTTCTTTCTTGAGTG+AGG | 0.502269 | 2_2:-62087356 | None:intergenic |
| TTGGTTCTAACCCCTTCACT+TGG | 0.503033 | 2_2:-62087966 | None:intergenic |
| CCAAAAGAGGGTGAATTTGA+AGG | 0.507121 | 2_2:+62087985 | Msa0263030:CDS |
| GAAGGAGGAATTCAAAGGTC+GGG | 0.508275 | 2_2:+62088158 | Msa0263030:CDS |
| GGATGGACAGCTCTATTTGG+TGG | 0.511268 | 2_2:+62087582 | Msa0263030:CDS |
| TTCCATAAAGAGAGATATTG+AGG | 0.514073 | 2_2:+62087441 | Msa0263030:CDS |
| TAGATTCTAGCCCCTTCAGT+TGG | 0.517790 | 2_2:-62087840 | None:intergenic |
| AAGGACGGCGCAAATAGAAA+AGG | 0.522739 | 2_2:+62087408 | Msa0263030:CDS |
| CGAAGCTCACAAGAAAATGC+AGG | 0.525690 | 2_2:+62087522 | Msa0263030:CDS |
| CAACTTGATGTCCAAGTGAA+GGG | 0.525880 | 2_2:+62087955 | Msa0263030:CDS |
| ACAATCTCAAATCACAAGAA+AGG | 0.527094 | 2_2:+62087890 | Msa0263030:CDS |
| GAAATTTGATGGACAAGTGA+AGG | 0.529834 | 2_2:+62088080 | Msa0263030:CDS |
| ATGTTTATTTAGCTTTGACT+CGG | 0.530810 | 2_2:-62088358 | None:intergenic |
| TGATTTGAAGTACTCAACCT+TGG | 0.535077 | 2_2:-62088217 | None:intergenic |
| ATACTTGTTTCATCAGTGGT+TGG | 0.537065 | 2_2:-62088617 | None:intergenic |
| TAATGCAGCTACATCTTACA+TGG | 0.538418 | 2_2:+62088580 | Msa0263030:intron |
| GGAATTTGAAAGCGAAGTGA+AGG | 0.538980 | 2_2:+62087690 | Msa0263030:CDS |
| GATAACAACAGTTCCTTGAA+CGG | 0.545327 | 2_2:+62087256 | Msa0263030:CDS |
| AGAACTCAAGACAAAAGAGT+TGG | 0.545966 | 2_2:+62087630 | Msa0263030:CDS |
| TGAAGGCAAGGTGAAGAAGC+TGG | 0.546278 | 2_2:+62088002 | Msa0263030:CDS |
| TCAAAGCTAAATAAACATGA+TGG | 0.552723 | 2_2:+62088363 | Msa0263030:CDS |
| TTTGGAAACCACGCTATCAA+AGG | 0.554761 | 2_2:-62087193 | None:intergenic |
| CTGCATACTTGTTTCATCAG+TGG | 0.556772 | 2_2:-62088621 | None:intergenic |
| AGAAGGAGGAATTCAAAGGT+CGG | 0.559804 | 2_2:+62088157 | Msa0263030:CDS |
| ATATGATGTTGGGGACACCT+TGG | 0.560967 | 2_2:-62087293 | None:intergenic |
| AGAATTTGAAAGCCAACTGA+AGG | 0.562148 | 2_2:+62087828 | Msa0263030:CDS |
| GGAATTTAACAGTCAAGTGA+AGG | 0.564555 | 2_2:+62088122 | Msa0263030:CDS |
| GGAGTTTAAAACGAAGAAGG+AGG | 0.567527 | 2_2:+62088143 | Msa0263030:CDS |
| GCAGGTTGAAGGAGAAGTCG+AGG | 0.567704 | 2_2:+62088332 | Msa0263030:CDS |
| GATTTATCAGTTGACATGGC+AGG | 0.570315 | 2_2:-62087328 | None:intergenic |
| ATTATTCCACGGTGTAAGAA+GGG | 0.572016 | 2_2:+62088734 | Msa0263030:CDS |
| GAATGTCAGTTTCATCACTT+GGG | 0.573057 | 2_2:-62088649 | None:intergenic |
| ATCATCATCATATGATGTTG+GGG | 0.577102 | 2_2:-62087302 | None:intergenic |
| GCAACTTGATGTCCAAGTGA+AGG | 0.577454 | 2_2:+62087954 | Msa0263030:CDS |
| GAAGGGGTTAGAACCAAAAG+AGG | 0.578189 | 2_2:+62087972 | Msa0263030:CDS |
| GAAGGAGTTCCAGTCAAAAG+AGG | 0.579907 | 2_2:+62088098 | Msa0263030:CDS |
| AAAGAAGCAATTTAAAACCA+AGG | 0.581001 | 2_2:+62088200 | Msa0263030:CDS |
| GAAGAATTTAGAAATGCAAG+TGG | 0.588456 | 2_2:+62087867 | Msa0263030:CDS |
| ATTTGAGGATTGCCAAAGGA+CGG | 0.589376 | 2_2:+62087393 | Msa0263030:CDS |
| AGAGGGTGAATTTGAAGGCA+AGG | 0.589411 | 2_2:+62087990 | Msa0263030:CDS |
| ACTTAATGTAAAGGGACGGA+GGG | 0.592476 | 2_2:+62090228 | Msa0263030:three_prime_UTR |
| TAGCGTGGTTTCCAAAGAAG+AGG | 0.592488 | 2_2:+62087200 | Msa0263030:CDS |
| GAATTTGAAAGCCAACTGAA+GGG | 0.592533 | 2_2:+62087829 | Msa0263030:CDS |
| TATCACACTGCCTGTTAAGA+GGG | 0.592867 | 2_2:+62087228 | Msa0263030:CDS |
| GCATTTCAAGAGCCAACTGA+AGG | 0.597255 | 2_2:+62088038 | Msa0263030:CDS |
| TCACAAGAAAGGCAATTGAA+AGG | 0.597578 | 2_2:+62087901 | Msa0263030:CDS |
| GGATAACATTTCAAAACAGA+AGG | 0.598026 | 2_2:+62087669 | Msa0263030:CDS |
| AAGGTATAAAGGAAAGACTC+TGG | 0.599520 | 2_2:-62090311 | None:intergenic |
| TACTGAACCCAATTATTCCA+CGG | 0.601091 | 2_2:+62088723 | Msa0263030:CDS |
| AAGTTTATTTGCAAAACCCA+AGG | 0.601876 | 2_2:-62089042 | None:intergenic |
| GCAGCTTGATGGCCGAGTGG+AGG | 0.604745 | 2_2:+62087786 | Msa0263030:CDS |
| TGGACAGCTCTATTTGGTGG+AGG | 0.605355 | 2_2:+62087585 | Msa0263030:CDS |
| ATAATGTTCCTTTGATAGCG+TGG | 0.608827 | 2_2:+62087185 | Msa0263030:CDS |
| AAATGATTTATCAGTTGACA+TGG | 0.611942 | 2_2:-62087332 | None:intergenic |
| ACGAAGAAGGAGGAATTCAA+AGG | 0.614145 | 2_2:+62088153 | Msa0263030:CDS |
| CGGTTTGATGAAGAAATCCA+AGG | 0.619527 | 2_2:+62087276 | Msa0263030:CDS |
| GGAGTTCCAGTCAAAAGAGG+AGG | 0.625446 | 2_2:+62088101 | Msa0263030:CDS |
| AACTTAATGTAAAGGGACGG+AGG | 0.627354 | 2_2:+62090227 | Msa0263030:three_prime_UTR |
| CGAAGCAATTTGAAGAACGA+GGG | 0.629722 | 2_2:+62088244 | Msa0263030:CDS |
| AACTTGATGTCCAAGTGAAG+GGG | 0.630056 | 2_2:+62087956 | Msa0263030:CDS |
| AGCGTGGTTTCCAAAGAAGA+GGG | 0.630586 | 2_2:+62087201 | Msa0263030:CDS |
| GTTGGAACTTCGTCAAGTCA+CGG | 0.634580 | 2_2:+62087648 | Msa0263030:CDS |
| AATCATTTGAGGATTGCCAA+AGG | 0.639694 | 2_2:+62087389 | Msa0263030:CDS |
| AATTTGAAAGCCAACTGAAG+GGG | 0.641010 | 2_2:+62087830 | Msa0263030:CDS |
| GCGAAGCAATTTGAAGAACG+AGG | 0.641039 | 2_2:+62088243 | Msa0263030:CDS |
| TAAACATGATGGAACACCGA+AGG | 0.645152 | 2_2:+62088374 | Msa0263030:CDS |
| GAAGCTCACAAGAAAATGCA+GGG | 0.647450 | 2_2:+62087523 | Msa0263030:CDS |
| TGCTCAGCACAAGATAGCTG+TGG | 0.658441 | 2_2:+62089007 | Msa0263030:three_prime_UTR |
| GAAGCAGCTTGATGGCCGAG+TGG | 0.673580 | 2_2:+62087783 | Msa0263030:CDS |
| TAGCATCAATAATCACAGCA+TGG | 0.675578 | 2_2:-62088760 | None:intergenic |
| AAAGGGTTAATCTTCGGTGA+CGG | 0.683323 | 2_2:-62088821 | None:intergenic |
| TTGACTTAAGCTCCTCCACG+CGG | 0.692205 | 2_2:-62087756 | None:intergenic |
| AAGGGGTTAGAACCAAAAGA+GGG | 0.694199 | 2_2:+62087973 | Msa0263030:CDS |
| TGGTCTCCCTTCTTACACCG+TGG | 0.716671 | 2_2:-62088740 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAACATTTAAATTTTAAA+TGG | + | chr2_2:62087095-62087114 | Msa0263030:CDS | 10.0% |
| !!! | TCATCAAAATATTTTATTAA+TGG | - | chr2_2:62088429-62088448 | None:intergenic | 10.0% |
| !!! | ATTAATAAAATATTTTGATG+AGG | + | chr2_2:62088428-62088447 | Msa0263030:CDS | 10.0% |
| !! | ATCAAAATTACTAAAAGAAA+TGG | - | chr2_2:62088509-62088528 | None:intergenic | 15.0% |
| !!! | ATTTTAATTTAGATATGGTT+TGG | + | chr2_2:62089071-62089090 | Msa0263030:intron | 15.0% |
| !!! | ATTAGTTATATTTTCCAATT+TGG | - | chr2_2:62089546-62089565 | None:intergenic | 15.0% |
| !! | ACAAACATTAAATAAATTCT+AGG | - | chr2_2:62090077-62090096 | None:intergenic | 15.0% |
| !! | AATTTATTTAATGTTTGTTC+TGG | + | chr2_2:62090079-62090098 | Msa0263030:intron | 15.0% |
| !! | TAGAAAAAACTTAATGTAAA+GGG | + | chr2_2:62090220-62090239 | Msa0263030:three_prime_UTR | 15.0% |
| !! | ATTTGTAGAAAAATCATTTG+AGG | + | chr2_2:62087378-62087397 | Msa0263030:CDS | 20.0% |
| !! | AAAAAGAAAATTAGTCATGT+TGG | + | chr2_2:62087490-62087509 | Msa0263030:CDS | 20.0% |
| !! | TCAAAAGAAAAGAAATTTGA+TGG | + | chr2_2:62088069-62088088 | Msa0263030:CDS | 20.0% |
| !! | AGAAAATACTGAAAATTCTT+TGG | + | chr2_2:62088896-62088915 | Msa0263030:three_prime_UTR | 20.0% |
| !!! | CAGGTATTTTAATTTAGATA+TGG | + | chr2_2:62089066-62089085 | Msa0263030:intron | 20.0% |
| !! | TTGTGTATAATAGTGTTATA+AGG | + | chr2_2:62089607-62089626 | Msa0263030:intron | 20.0% |
| !! | TATAGTAGATATTTGTAACT+TGG | + | chr2_2:62089846-62089865 | Msa0263030:intron | 20.0% |
| !!! | TATTTCTTGCATTTTCTAAA+TGG | + | chr2_2:62090002-62090021 | Msa0263030:intron | 20.0% |
| !!! | ATTTTGTTGAGAATCTTATT+AGG | + | chr2_2:62090140-62090159 | Msa0263030:three_prime_UTR | 20.0% |
| !! | CTAGAAAAAACTTAATGTAA+AGG | + | chr2_2:62090219-62090238 | Msa0263030:three_prime_UTR | 20.0% |
| ! | AAATGATTTATCAGTTGACA+TGG | - | chr2_2:62087335-62087354 | None:intergenic | 25.0% |
| !!! | TTTCTTATTTTCTAGCTCTT+TGG | - | chr2_2:62087473-62087492 | None:intergenic | 25.0% |
| ! | AAAAATTGAAGAATGTGTCA+AGG | + | chr2_2:62087546-62087565 | Msa0263030:CDS | 25.0% |
| !! | AAAGAAGCAATTTAAAACCA+AGG | + | chr2_2:62088200-62088219 | Msa0263030:CDS | 25.0% |
| !!! | ATGTTTATTTAGCTTTGACT+CGG | - | chr2_2:62088361-62088380 | None:intergenic | 25.0% |
| ! | TCAAAGCTAAATAAACATGA+TGG | + | chr2_2:62088363-62088382 | Msa0263030:CDS | 25.0% |
| ! | TAACCTGATCTATATATATG+AGG | + | chr2_2:62088537-62088556 | Msa0263030:intron | 25.0% |
| ! | AACCTGATCTATATATATGA+GGG | + | chr2_2:62088538-62088557 | Msa0263030:intron | 25.0% |
| !!! | TATATCCTATTTTGAGAATG+TGG | + | chr2_2:62089335-62089354 | Msa0263030:intron | 25.0% |
| ! | ATAATAGTGTTATAAGGTTC+TGG | + | chr2_2:62089613-62089632 | Msa0263030:intron | 25.0% |
| ! | TAATAGCAGATAGATAACAA+TGG | - | chr2_2:62089694-62089713 | None:intergenic | 25.0% |
| ! | ATTGTTATCTATCTGCTATT+AGG | + | chr2_2:62089693-62089712 | Msa0263030:intron | 25.0% |
| !!! | AATGAACCCTTTTAAGAAAT+AGG | + | chr2_2:62089735-62089754 | Msa0263030:intron | 25.0% |
| !! | AGTTGTCCTATTTCTTAAAA+GGG | - | chr2_2:62089744-62089763 | None:intergenic | 25.0% |
| ! | TTAAGAGAAAATTGACATCT+TGG | + | chr2_2:62089929-62089948 | Msa0263030:intron | 25.0% |
| ! | AAAAACTTAATGTAAAGGGA+CGG | + | chr2_2:62090224-62090243 | Msa0263030:three_prime_UTR | 25.0% |
| ! | TGAAAAATGTTCAAGAAGTT+GGG | - | chr2_2:62090278-62090297 | None:intergenic | 25.0% |
| ! | GATAAGCCAAATTTTTGTGT+TGG | + | chr2_2:62087064-62087083 | Msa0263030:CDS | 30.0% |
| TCATCTCCAACACAAAAATT+TGG | - | chr2_2:62087073-62087092 | None:intergenic | 30.0% | |
| GAATCAAAGTCTTGAAGAAA+AGG | - | chr2_2:62087154-62087173 | None:intergenic | 30.0% | |
| ATCATCATCATATGATGTTG+GGG | - | chr2_2:62087305-62087324 | None:intergenic | 30.0% | |
| CATCATCATCATATGATGTT+GGG | - | chr2_2:62087306-62087325 | None:intergenic | 30.0% | |
| ACATCATCATCATATGATGT+TGG | - | chr2_2:62087307-62087326 | None:intergenic | 30.0% | |
| TTCCATAAAGAGAGATATTG+AGG | + | chr2_2:62087441-62087460 | Msa0263030:CDS | 30.0% | |
| GGATAACATTTCAAAACAGA+AGG | + | chr2_2:62087669-62087688 | Msa0263030:CDS | 30.0% | |
| GAAGAATTTAGAAATGCAAG+TGG | + | chr2_2:62087867-62087886 | Msa0263030:CDS | 30.0% | |
| ACAATCTCAAATCACAAGAA+AGG | + | chr2_2:62087890-62087909 | Msa0263030:CDS | 30.0% | |
| !! | TGTTTATTTAGCTTTGACTC+GGG | - | chr2_2:62088360-62088379 | None:intergenic | 30.0% |
| TTTGATGAGGAAATAGAATC+TGG | + | chr2_2:62088441-62088460 | Msa0263030:CDS | 30.0% | |
| ! | ATATCCAGAACAATTTTTGC+TGG | - | chr2_2:62088701-62088720 | None:intergenic | 30.0% |
| TTACACAAAGGGTTAATCTT+CGG | - | chr2_2:62088830-62088849 | None:intergenic | 30.0% | |
| !!! | TGCGTCTTTTTTTACACAAA+GGG | - | chr2_2:62088841-62088860 | None:intergenic | 30.0% |
| !!! | ATGCGTCTTTTTTTACACAA+AGG | - | chr2_2:62088842-62088861 | None:intergenic | 30.0% |
| ! | GAAAATTCTTTGGTAGTTGT+TGG | + | chr2_2:62088906-62088925 | Msa0263030:three_prime_UTR | 30.0% |
| ! | TTTTGATGAAGATGAAGTCT+TGG | + | chr2_2:62088968-62088987 | Msa0263030:three_prime_UTR | 30.0% |
| AAGTTTATTTGCAAAACCCA+AGG | - | chr2_2:62089045-62089064 | None:intergenic | 30.0% | |
| ! | GGTTTTGCAAATAAACTTTC+AGG | + | chr2_2:62089047-62089066 | Msa0263030:three_prime_UTR | 30.0% |
| TTACATGTGTAACTCTTATG+AGG | + | chr2_2:62089194-62089213 | Msa0263030:intron | 30.0% | |
| !! | AACTCTTATGAGGTTTGTTA+TGG | + | chr2_2:62089204-62089223 | Msa0263030:intron | 30.0% |
| AGATTCCACATTCTCAAAAT+AGG | - | chr2_2:62089343-62089362 | None:intergenic | 30.0% | |
| ! | TTAGAACCGTGTTTGAAATA+TGG | + | chr2_2:62089362-62089381 | Msa0263030:intron | 30.0% |
| TGCAAACCATATTTCAAACA+CGG | - | chr2_2:62089371-62089390 | None:intergenic | 30.0% | |
| GAGAACTGAGTCATATTTAA+CGG | - | chr2_2:62089449-62089468 | None:intergenic | 30.0% | |
| ATCCATAATACAACACTACA+AGG | - | chr2_2:62089481-62089500 | None:intergenic | 30.0% | |
| ATGGATGATGAATTCTTAAG+TGG | + | chr2_2:62089495-62089514 | Msa0263030:intron | 30.0% | |
| !! | TACATTGAGTTGAACATAAG+TGG | + | chr2_2:62089518-62089537 | Msa0263030:intron | 30.0% |
| TCGATAGAAACATGAAGAAA+TGG | - | chr2_2:62089651-62089670 | None:intergenic | 30.0% | |
| ! | GAGTTGTCCTATTTCTTAAA+AGG | - | chr2_2:62089745-62089764 | None:intergenic | 30.0% |
| ATGATAAGTACAAACTATGC+AGG | + | chr2_2:62089798-62089817 | Msa0263030:intron | 30.0% | |
| ACAAATGATAGAACTGTTAG+CGG | - | chr2_2:62089910-62089929 | None:intergenic | 30.0% | |
| GCAAGAAATACATAAAAGAC+AGG | - | chr2_2:62089992-62090011 | None:intergenic | 30.0% | |
| ! | GCATTTTCTAAATGGTTTGA+AGG | + | chr2_2:62090010-62090029 | Msa0263030:intron | 30.0% |
| AACAAAAAACCAAAGCAGAT+TGG | - | chr2_2:62090053-62090072 | None:intergenic | 30.0% | |
| !! | AATTTGTTGTGCTTGTTACT+TGG | + | chr2_2:62090170-62090189 | Msa0263030:three_prime_UTR | 30.0% |
| GAAAAATGTTCAAGAAGTTG+GGG | - | chr2_2:62090277-62090296 | None:intergenic | 30.0% | |
| GTGAAAAATGTTCAAGAAGT+TGG | - | chr2_2:62090279-62090298 | None:intergenic | 30.0% | |
| !! | ATAATGTTCCTTTGATAGCG+TGG | + | chr2_2:62087185-62087204 | Msa0263030:CDS | 35.0% |
| TTATCAGATACCCTCTTAAC+AGG | - | chr2_2:62087241-62087260 | None:intergenic | 35.0% | |
| GATAACAACAGTTCCTTGAA+CGG | + | chr2_2:62087256-62087275 | Msa0263030:CDS | 35.0% | |
| TTTCTTCATCAAACCGTTCA+AGG | - | chr2_2:62087272-62087291 | None:intergenic | 35.0% | |
| AATCATTTGAGGATTGCCAA+AGG | + | chr2_2:62087389-62087408 | Msa0263030:CDS | 35.0% | |
| CTCCTCAATATCTCTCTTTA+TGG | - | chr2_2:62087446-62087465 | None:intergenic | 35.0% | |
| ! | TGTCAAGGATTTTGTAGCAA+AGG | + | chr2_2:62087561-62087580 | Msa0263030:CDS | 35.0% |
| ! | AAGGATTTTGTAGCAAAGGA+TGG | + | chr2_2:62087565-62087584 | Msa0263030:CDS | 35.0% |
| AGAACTCAAGACAAAAGAGT+TGG | + | chr2_2:62087630-62087649 | Msa0263030:CDS | 35.0% | |
| AGAATTTGAAAGCCAACTGA+AGG | + | chr2_2:62087828-62087847 | Msa0263030:CDS | 35.0% | |
| GAATTTGAAAGCCAACTGAA+GGG | + | chr2_2:62087829-62087848 | Msa0263030:CDS | 35.0% | |
| AATTTGAAAGCCAACTGAAG+GGG | + | chr2_2:62087830-62087849 | Msa0263030:CDS | 35.0% | |
| TCACAAGAAAGGCAATTGAA+AGG | + | chr2_2:62087901-62087920 | Msa0263030:CDS | 35.0% | |
| GCAATTGAAAGGACAAGTTA+AGG | + | chr2_2:62087912-62087931 | Msa0263030:CDS | 35.0% | |
| ! | GAAATTTGATGGACAAGTGA+AGG | + | chr2_2:62088080-62088099 | Msa0263030:CDS | 35.0% |
| ! | TAAATTCCTCCTCTTTTGAC+TGG | - | chr2_2:62088110-62088129 | None:intergenic | 35.0% |
| GGAATTTAACAGTCAAGTGA+AGG | + | chr2_2:62088122-62088141 | Msa0263030:CDS | 35.0% | |
| ! | GAAGGAGTTTAAAACGAAGA+AGG | + | chr2_2:62088140-62088159 | Msa0263030:CDS | 35.0% |
| ! | TGATTTGAAGTACTCAACCT+TGG | - | chr2_2:62088220-62088239 | None:intergenic | 35.0% |
| ACTCAAGTTAAAAGAGAAGC+AGG | + | chr2_2:62088314-62088333 | Msa0263030:CDS | 35.0% | |
| ! | TTAAAAGAGAAGCAGGTTGA+AGG | + | chr2_2:62088321-62088340 | Msa0263030:CDS | 35.0% |
| ! | TATTGTTTCTCTGTCAACTC+AGG | - | chr2_2:62088402-62088421 | None:intergenic | 35.0% |
| CTCCCTCATATATATAGATC+AGG | - | chr2_2:62088543-62088562 | None:intergenic | 35.0% | |
| TAATGCAGCTACATCTTACA+TGG | + | chr2_2:62088580-62088599 | Msa0263030:intron | 35.0% | |
| ATACTTGTTTCATCAGTGGT+TGG | - | chr2_2:62088620-62088639 | None:intergenic | 35.0% | |
| GAATGTCAGTTTCATCACTT+GGG | - | chr2_2:62088652-62088671 | None:intergenic | 35.0% | |
| AGAATGTCAGTTTCATCACT+TGG | - | chr2_2:62088653-62088672 | None:intergenic | 35.0% | |
| AGATCCAGCAAAAATTGTTC+TGG | + | chr2_2:62088694-62088713 | Msa0263030:CDS | 35.0% | |
| TACTGAACCCAATTATTCCA+CGG | + | chr2_2:62088723-62088742 | Msa0263030:CDS | 35.0% | |
| TCTTACACCGTGGAATAATT+GGG | - | chr2_2:62088733-62088752 | None:intergenic | 35.0% | |
| TTCTTACACCGTGGAATAAT+TGG | - | chr2_2:62088734-62088753 | None:intergenic | 35.0% | |
| AATTATTCCACGGTGTAAGA+AGG | + | chr2_2:62088733-62088752 | Msa0263030:CDS | 35.0% | |
| ATTATTCCACGGTGTAAGAA+GGG | + | chr2_2:62088734-62088753 | Msa0263030:CDS | 35.0% | |
| TAGCATCAATAATCACAGCA+TGG | - | chr2_2:62088763-62088782 | None:intergenic | 35.0% | |
| CATGTGTAACTCTTCTTTGA+AGG | + | chr2_2:62089165-62089184 | Msa0263030:intron | 35.0% | |
| ! | TGTAACTCTTCTTTGAAGGA+AGG | + | chr2_2:62089169-62089188 | Msa0263030:intron | 35.0% |
| ! | CTGTTTTCGTAATTGATGTC+TGG | + | chr2_2:62089403-62089422 | Msa0263030:intron | 35.0% |
| !! | GTAATTGATGTCTGGTTCTT+TGG | + | chr2_2:62089411-62089430 | Msa0263030:intron | 35.0% |
| !! | TCTGGTTCTTTGGATGAAAA+TGG | + | chr2_2:62089421-62089440 | Msa0263030:intron | 35.0% |
| TAAATATGACTCAGTTCTCC+TGG | + | chr2_2:62089450-62089469 | Msa0263030:intron | 35.0% | |
| GTCCTTGTAGTGTTGTATTA+TGG | + | chr2_2:62089476-62089495 | Msa0263030:intron | 35.0% | |
| ATCTATCTGCTATTAGGATG+AGG | + | chr2_2:62089699-62089718 | Msa0263030:intron | 35.0% | |
| TGAAATTGAACTCGCGTAAT+TGG | + | chr2_2:62089871-62089890 | Msa0263030:intron | 35.0% | |
| TTATTCAGTCCAATCTGCTT+TGG | + | chr2_2:62090041-62090060 | Msa0263030:intron | 35.0% | |
| GATTCTCAACAAAATCTGCA+AGG | - | chr2_2:62090135-62090154 | None:intergenic | 35.0% | |
| TTTGGAAACCACGCTATCAA+AGG | - | chr2_2:62087196-62087215 | None:intergenic | 40.0% | |
| GTGATAGTATCCCTCTTCTT+TGG | - | chr2_2:62087214-62087233 | None:intergenic | 40.0% | |
| TATCACACTGCCTGTTAAGA+GGG | + | chr2_2:62087228-62087247 | Msa0263030:CDS | 40.0% | |
| CGGTTTGATGAAGAAATCCA+AGG | + | chr2_2:62087276-62087295 | Msa0263030:CDS | 40.0% | |
| GATTTATCAGTTGACATGGC+AGG | - | chr2_2:62087331-62087350 | None:intergenic | 40.0% | |
| TGCAAGTTCTTTCTTGAGTG+AGG | - | chr2_2:62087359-62087378 | None:intergenic | 40.0% | |
| ATTTGAGGATTGCCAAAGGA+CGG | + | chr2_2:62087393-62087412 | Msa0263030:CDS | 40.0% | |
| GAAGCTCACAAGAAAATGCA+GGG | + | chr2_2:62087523-62087542 | Msa0263030:CDS | 40.0% | |
| AAAGGATGGACAGCTCTATT+TGG | + | chr2_2:62087579-62087598 | Msa0263030:CDS | 40.0% | |
| GGAATTTGAAAGCGAAGTGA+AGG | + | chr2_2:62087690-62087709 | Msa0263030:CDS | 40.0% | |
| GAAGGAGCTAGTGAATGATT+TGG | + | chr2_2:62087708-62087727 | Msa0263030:CDS | 40.0% | |
| TCAAAAGAGAAGCAGCTTGA+TGG | + | chr2_2:62087775-62087794 | Msa0263030:CDS | 40.0% | |
| TTGATTCATGTTCCTCCACT+CGG | - | chr2_2:62087801-62087820 | None:intergenic | 40.0% | |
| CAACTTGATGTCCAAGTGAA+GGG | + | chr2_2:62087955-62087974 | Msa0263030:CDS | 40.0% | |
| AACTTGATGTCCAAGTGAAG+GGG | + | chr2_2:62087956-62087975 | Msa0263030:CDS | 40.0% | |
| AAGGGGTTAGAACCAAAAGA+GGG | + | chr2_2:62087973-62087992 | Msa0263030:CDS | 40.0% | |
| ! | CCTTCAAATTCACCCTCTTT+TGG | - | chr2_2:62087988-62088007 | None:intergenic | 40.0% |
| CCAAAAGAGGGTGAATTTGA+AGG | + | chr2_2:62087985-62088004 | Msa0263030:CDS | 40.0% | |
| ! | GGAGTTTAAAACGAAGAAGG+AGG | + | chr2_2:62088143-62088162 | Msa0263030:CDS | 40.0% |
| ACGAAGAAGGAGGAATTCAA+AGG | + | chr2_2:62088153-62088172 | Msa0263030:CDS | 40.0% | |
| AGAAGGAGGAATTCAAAGGT+CGG | + | chr2_2:62088157-62088176 | Msa0263030:CDS | 40.0% | |
| CGAAGCAATTTGAAGAACGA+GGG | + | chr2_2:62088244-62088263 | Msa0263030:CDS | 40.0% | |
| ! | TAAACATGATGGAACACCGA+AGG | + | chr2_2:62088374-62088393 | Msa0263030:CDS | 40.0% |
| CTGCATACTTGTTTCATCAG+TGG | - | chr2_2:62088624-62088643 | None:intergenic | 40.0% | |
| AAAGGGTTAATCTTCGGTGA+CGG | - | chr2_2:62088824-62088843 | None:intergenic | 40.0% | |
| AGATAGCTGTGGAACTGTTT+CGG | + | chr2_2:62089018-62089037 | Msa0263030:three_prime_UTR | 40.0% | |
| AGCATCTAACACTTGCAATC+TGG | - | chr2_2:62089244-62089263 | None:intergenic | 40.0% | |
| GAACATAAGTGGAGCCAAAT+TGG | + | chr2_2:62089529-62089548 | Msa0263030:intron | 40.0% | |
| AGCAGATAGATAACAATGGC+AGG | - | chr2_2:62089690-62089709 | None:intergenic | 40.0% | |
| TATCTGCTATTAGGATGAGG+TGG | + | chr2_2:62089702-62089721 | Msa0263030:intron | 40.0% | |
| !! | GACATCTTGGTGCTAATGAT+TGG | + | chr2_2:62089942-62089961 | Msa0263030:intron | 40.0% |
| AACTTAATGTAAAGGGACGG+AGG | + | chr2_2:62090227-62090246 | Msa0263030:three_prime_UTR | 40.0% | |
| ACTTAATGTAAAGGGACGGA+GGG | + | chr2_2:62090228-62090247 | Msa0263030:three_prime_UTR | 40.0% | |
| TAGCGTGGTTTCCAAAGAAG+AGG | + | chr2_2:62087200-62087219 | Msa0263030:CDS | 45.0% | |
| AGCGTGGTTTCCAAAGAAGA+GGG | + | chr2_2:62087201-62087220 | Msa0263030:CDS | 45.0% | |
| CTATCACACTGCCTGTTAAG+AGG | + | chr2_2:62087227-62087246 | Msa0263030:CDS | 45.0% | |
| ATATGATGTTGGGGACACCT+TGG | - | chr2_2:62087296-62087315 | None:intergenic | 45.0% | |
| TTTCTATTTGCGCCGTCCTT+TGG | - | chr2_2:62087408-62087427 | None:intergenic | 45.0% | |
| AAGGACGGCGCAAATAGAAA+AGG | + | chr2_2:62087408-62087427 | Msa0263030:CDS | 45.0% | |
| CGAAGCTCACAAGAAAATGC+AGG | + | chr2_2:62087522-62087541 | Msa0263030:CDS | 45.0% | |
| GTTGGAACTTCGTCAAGTCA+CGG | + | chr2_2:62087648-62087667 | Msa0263030:CDS | 45.0% | |
| TAGATTCTAGCCCCTTCAGT+TGG | - | chr2_2:62087843-62087862 | None:intergenic | 45.0% | |
| GCAACTTGATGTCCAAGTGA+AGG | + | chr2_2:62087954-62087973 | Msa0263030:CDS | 45.0% | |
| !! | TTGGTTCTAACCCCTTCACT+TGG | - | chr2_2:62087969-62087988 | None:intergenic | 45.0% |
| GAAGGGGTTAGAACCAAAAG+AGG | + | chr2_2:62087972-62087991 | Msa0263030:CDS | 45.0% | |
| AGAGGGTGAATTTGAAGGCA+AGG | + | chr2_2:62087990-62088009 | Msa0263030:CDS | 45.0% | |
| GCATTTCAAGAGCCAACTGA+AGG | + | chr2_2:62088038-62088057 | Msa0263030:CDS | 45.0% | |
| ! | TTGATTCGAGCTCCTTCAGT+TGG | - | chr2_2:62088053-62088072 | None:intergenic | 45.0% |
| GAAGGAGTTCCAGTCAAAAG+AGG | + | chr2_2:62088098-62088117 | Msa0263030:CDS | 45.0% | |
| GAAGGAGGAATTCAAAGGTC+GGG | + | chr2_2:62088158-62088177 | Msa0263030:CDS | 45.0% | |
| GGAATTCAAAGGTCGGGTTA+AGG | + | chr2_2:62088164-62088183 | Msa0263030:CDS | 45.0% | |
| GCGAAGCAATTTGAAGAACG+AGG | + | chr2_2:62088243-62088262 | Msa0263030:CDS | 45.0% | |
| TGCTAGCGACATCATTCTGT+TGG | + | chr2_2:62088778-62088797 | Msa0263030:CDS | 45.0% | |
| GGATGGACAGCTCTATTTGG+TGG | + | chr2_2:62087582-62087601 | Msa0263030:CDS | 50.0% | |
| ! | TGGACAGCTCTATTTGGTGG+AGG | + | chr2_2:62087585-62087604 | Msa0263030:CDS | 50.0% |
| !! | GAAGCATTTTGAAAGCCGCG+TGG | + | chr2_2:62087741-62087760 | Msa0263030:CDS | 50.0% |
| TTGACTTAAGCTCCTCCACG+CGG | - | chr2_2:62087759-62087778 | None:intergenic | 50.0% | |
| TGAAGGCAAGGTGAAGAAGC+TGG | + | chr2_2:62088002-62088021 | Msa0263030:CDS | 50.0% | |
| GGAGTTCCAGTCAAAAGAGG+AGG | + | chr2_2:62088101-62088120 | Msa0263030:CDS | 50.0% | |
| TCTGTCAACTCAGGCTCCTT+CGG | - | chr2_2:62088393-62088412 | None:intergenic | 50.0% | |
| TGCTCAGCACAAGATAGCTG+TGG | + | chr2_2:62089007-62089026 | Msa0263030:three_prime_UTR | 50.0% | |
| TGTGGAACTGTTTCGGACCT+TGG | + | chr2_2:62089025-62089044 | Msa0263030:three_prime_UTR | 50.0% | |
| GTGGAACTGTTTCGGACCTT+GGG | + | chr2_2:62089026-62089045 | Msa0263030:three_prime_UTR | 50.0% | |
| CAACACTACAAGGACACTCC+AGG | - | chr2_2:62089471-62089490 | None:intergenic | 50.0% | |
| !! | GCATTTTGAAAGCCGCGTGG+AGG | + | chr2_2:62087744-62087763 | Msa0263030:CDS | 55.0% |
| ! | GCAGGTTGAAGGAGAAGTCG+AGG | + | chr2_2:62088332-62088351 | Msa0263030:CDS | 55.0% |
| TGGTCTCCCTTCTTACACCG+TGG | - | chr2_2:62088743-62088762 | None:intergenic | 55.0% | |
| ! | GAAGCAGCTTGATGGCCGAG+TGG | + | chr2_2:62087783-62087802 | Msa0263030:CDS | 60.0% |
| ! | GCAGCTTGATGGCCGAGTGG+AGG | + | chr2_2:62087786-62087805 | Msa0263030:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 62087046 | 62090318 | 62087046 | ID=Msa0263030;Name=Msa0263030 |
| chr2_2 | mRNA | 62087046 | 62090318 | 62087046 | ID=Msa0263030-mRNA-1;Parent=Msa0263030;Name=Msa0263030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.66|1|1|0.66|3|370|568 |
| chr2_2 | exon | 62087046 | 62088462 | 62087046 | ID=Msa0263030-mRNA-1:exon:19158;Parent=Msa0263030-mRNA-1 |
| chr2_2 | exon | 62088588 | 62089068 | 62088588 | ID=Msa0263030-mRNA-1:exon:19159;Parent=Msa0263030-mRNA-1 |
| chr2_2 | exon | 62090140 | 62090318 | 62090140 | ID=Msa0263030-mRNA-1:exon:19160;Parent=Msa0263030-mRNA-1 |
| chr2_2 | CDS | 62087046 | 62088462 | 62087046 | ID=Msa0263030-mRNA-1:cds;Parent=Msa0263030-mRNA-1 |
| chr2_2 | CDS | 62088588 | 62088877 | 62088588 | ID=Msa0263030-mRNA-1:cds;Parent=Msa0263030-mRNA-1 |
| chr2_2 | three_prime_UTR | 62088878 | 62089068 | 62088878 | ID=Msa0263030-mRNA-1:three_prime_utr;Parent=Msa0263030-mRNA-1 |
| chr2_2 | three_prime_UTR | 62090140 | 62090318 | 62090140 | ID=Msa0263030-mRNA-1:three_prime_utr;Parent=Msa0263030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
