AlfalfaGEDB | Msa0337980

M. sativa cultivar zhongmu-4 / Msa0337980

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337980	XP_013465233.1	97.976	247	5	0	1	247	1	247	4.21e-175	491

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337980	sp\|Q9S7Y1\|BH030_ARATH	41.327	196	107	5	45	236	160	351	2.04e-32	124

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0337980	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0300460	Msa0337980	0.884421	1.944987e-71	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337980	MtrunA17_Chr2g0325521	97.976	247	5	0	1	247	1	247	3.87e-179	491
Msa0337980	MtrunA17_Chr4g0041051	72.266	256	62	3	1	247	1	256	1.23e-121	346
Msa0337980	MtrunA17_Chr4g0045901	44.672	244	124	6	2	235	13	255	6.12e-51	167
Msa0337980	MtrunA17_Chr7g0255961	47.253	182	86	4	54	234	70	242	4.07e-42	144
Msa0337980	MtrunA17_Chr1g0198801	40.594	202	109	3	45	242	144	338	1.99e-34	126
Msa0337980	MtrunA17_Chr3g0113721	33.333	201	115	5	46	234	26	219	7.62e-31	114
Msa0337980	MtrunA17_Chr5g0412371	38.462	143	74	3	54	188	40	176	4.16e-26	101
Msa0337980	MtrunA17_Chr5g0427361	40.606	165	72	2	49	188	27	190	4.99e-25	99.4
Msa0337980	MtrunA17_Chr2g0283714	51.250	80	36	1	91	170	16	92	3.09e-20	83.6
Msa0337980	MtrunA17_Chr5g0411341	40.244	82	49	0	28	109	459	540	3.39e-12	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337980	AT1G68810.1	41.327	196	107	5	45	236	160	351	2.07e-33	124
Msa0337980	AT3G25710.1	46.622	148	70	2	45	188	118	260	9.35e-32	119
Msa0337980	AT3G56770.1	38.857	175	98	4	51	223	37	204	1.53e-30	113
Msa0337980	AT2G40200.1	39.634	164	89	3	61	219	65	223	1.65e-29	111
Msa0337980	AT2G41130.1	40.571	175	96	3	51	223	59	227	4.08e-27	105
Msa0337980	AT4G38070.1	36.154	130	76	2	59	188	92	214	1.17e-17	80.1
Msa0337980	AT5G46760.1	44.156	77	42	1	39	114	391	467	2.20e-11	63.9
Msa0337980	AT4G17880.1	40.789	76	45	0	39	114	393	468	2.30e-11	63.5
Msa0337980	AT1G32640.1	36.634	101	61	2	33	130	421	521	3.54e-11	63.2

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Find 68 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACACAGTTCCCAAG+AGG	0.688172	2_4:-58121336	None:intergenic
AAACAACACAGTTCCCAAGA+GGG	0.661371	2_4:-58121335	None:intergenic
AAAGATTACTTCTTATAGTG+GGG	0.583347	2_4:-58121023	None:intergenic
AAAGCTTCAATACTTCTCTC+GGG	0.540932	2_4:-58121518	None:intergenic
AACTAACCTTATTAGCACCT+GGG	0.573545	2_4:-58121616	None:intergenic
AAGATTACTTCTTATAGTGG+GGG	0.618050	2_4:-58121022	None:intergenic
AAGGGCAGAGATTGCAACTT+TGG	0.372459	2_4:+58122718	Msa0337980:CDS
AATGATGCTCTAATTGAATA+AGG	0.233216	2_4:-58122623	None:intergenic
AATGCAGCACAAGCAAGTGA+AGG	0.583141	2_4:+58122533	Msa0337980:CDS
ACAACGTTGGAAGAAGAAGA+AGG	0.578318	2_4:-58121273	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACTGTTATATTTGTGTGTT+TGG	-	chr2_4:58121240-58121259	None:intergenic	30.0%
TGAAGACTCACACTTTAATA+GGG	+	chr2_4:58121943-58121962	Msa0337980:intron	30.0%
CATTCAAATGACCATAAAAG+AGG	-	chr2_4:58121983-58122002	None:intergenic	30.0%
AGTTAAATTGAGACAGTGAA+TGG	+	chr2_4:58122127-58122146	Msa0337980:intron	30.0%
GACTTCAAAAGTAAGCAAAA+TGG	-	chr2_4:58122185-58122204	None:intergenic	30.0%
TGTAATAACTTCAGCTAGTA+AGG	-	chr2_4:58122492-58122511	None:intergenic	30.0%
ATAAGAGTTGAATCACAAGA+AGG	+	chr2_4:58122584-58122603	Msa0337980:CDS	30.0%
TTATGTTGTGAATACAAACC+CGG	+	chr2_4:58122644-58122663	Msa0337980:CDS	30.0%
CTTATATCAGACAATAAACC+GGG	-	chr2_4:58122665-58122684	None:intergenic	30.0%
TCTTAGAAACTAGAAAGAGA+AGG	+	chr2_4:58122882-58122901	Msa0337980:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	58121024	58123146	58121024	ID=Msa0337980;Name=Msa0337980
chr2_4	mRNA	58121024	58123146	58121024	ID=Msa0337980-mRNA-1;Parent=Msa0337980;Name=Msa0337980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=338\|1\|1\|1\|1\|1\|2\|197\|247
chr2_4	exon	58121024	58121631	58121024	ID=Msa0337980-mRNA-1:exon:17779;Parent=Msa0337980-mRNA-1
chr2_4	exon	58122476	58123146	58122476	ID=Msa0337980-mRNA-1:exon:17780;Parent=Msa0337980-mRNA-1
chr2_4	five_prime_UTR	58121024	58121361	58121024	ID=Msa0337980-mRNA-1:five_prime_utr;Parent=Msa0337980-mRNA-1
chr2_4	CDS	58121362	58121631	58121362	ID=Msa0337980-mRNA-1:cds;Parent=Msa0337980-mRNA-1
chr2_4	CDS	58122476	58122949	58122476	ID=Msa0337980-mRNA-1:cds;Parent=Msa0337980-mRNA-1
chr2_4	three_prime_UTR	58122950	58123146	58122950	ID=Msa0337980-mRNA-1:three_prime_utr;Parent=Msa0337980-mRNA-1

Gene Sequence

>Msa0337980

ATGGAAATGGATGATTTTGCTTCAAGTAGAATGAATGATGGTTGTTTTCAAGGTGTAAATGGAAGTGGATATGGTTCATCTTCTTCACTGGTTTTGGATAGAGAAAAAGGAGAGCTTGTGGAGGCAGCTGTGAAATTGGAACGCAAAGGTGTGTCGCCCGAGAGAAGTATTGAAGCTTTGAAGAATCATAGTGAAGCAGAGAGGAGGAGAAGAGCAAGAATTAATTCACATCTTGATACACTTCGTAGTGTTATCCCAGGTGCTAATAAGTTGGACAAAGCATCCTTACTAGCTGAAGTTATTACACATTTGAAAGAGCTGAAAACAAATGCAGCACAAGCAAGTGAAGGGTTCATTATTCCAAAAGACAGTGATGAGATAAGAGTTGAATCACAAGAAGGTGGATTAAATGGTTACCCTTATTCAATTAGAGCATCATTATGTTGTGAATACAAACCCGGTTTATTGTCTGATATAAGAAAAGCACTTGATGCACTTCATCTTATGATAATAAGGGCAGAGATTGCAACTTTGGGAGGTAGAATGAAGAATGTCTTTGTCATAATTAGCTGCAAAGAACAGAATTTTGAAGATGCCGAGTATCGACAGTTTCTTGCTGGATCGGTTCATCAAGCTCTTAGATCTGTACTTGATAGATTTTCTGTTTCACAAGATATCTTAGAAACTAGAAAGAGAAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGGTGATTTCTTATAA

Protein sequence

>Msa0337980

MEMDDFASSRMNDGCFQGVNGSGYGSSSSLVLDREKGELVEAAVKLERKGVSPERSIEALKNHSEAERRRRARINSHLDTLRSVIPGANKLDKASLLAEVITHLKELKTNAAQASEGFIIPKDSDEIRVESQEGGLNGYPYSIRASLCCEYKPGLLSDIRKALDALHLMIIRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRSVLDRFSVSQDILETRKRRRISIFSSSSLGDFL*