AlfalfaGEDB | Msa0338090

M. sativa cultivar zhongmu-4 / Msa0338090

KEGG: -
GO: -
PFAM: PF19220.3

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338090	XP_039686723.1	62.963	1080	276	11	1	982	1	1054	0.0	1061
Msa0338090	XP_039686723.1	69.770	1085	239	10	419	1421	242	1319	0.0	1238

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0068680	Msa0338090	0.813551	2.417441e-51	-8.615850e-47
Msa0159930	Msa0338090	0.806866	6.680799e-50	-8.615850e-47
Msa0227250	Msa0338090	0.869829	2.309648e-66	-8.615850e-47
Msa0262600	Msa0338090	0.953720	1.470836e-111	-8.615850e-47
Msa0306080	Msa0338090	0.934071	7.120367e-96	-8.615850e-47
Msa0338090	Msa0338170	0.952304	3.234160e-110	-8.615850e-47
Msa0338090	Msa1204530	0.801172	1.020783e-48	-8.615850e-47
Msa0338090	Msa1421300	0.953014	6.949224e-111	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338090	MtrunA17_Chr2g0325361	76.506	830	176	3	597	1421	262	1077	0.0	1083
Msa0338090	MtrunA17_Chr2g0325361	64.259	817	214	8	1	751	1	805	0.0	825
Msa0338090	MtrunA17_Chr2g0325361	33.962	318	113	7	220	450	505	812	4.62e-21	100
Msa0338090	MtrunA17_Chr2g0325281	61.913	596	166	6	1	549	1	582	0.0	611
Msa0338090	MtrunA17_Chr2g0325281	52.381	357	158	3	807	1158	252	601	1.87e-76	266
Msa0338090	MtrunA17_Chr2g0325281	48.883	358	179	1	630	987	233	586	4.68e-76	265
Msa0338090	MtrunA17_Chr2g0325281	49.550	333	168	0	695	1027	252	584	1.44e-69	246
Msa0338090	MtrunA17_Chr2g0325281	44.086	372	190	2	486	857	229	582	1.27e-62	226
Msa0338090	MtrunA17_Chr2g0325281	42.005	369	189	1	391	759	239	582	2.34e-62	225
Msa0338090	MtrunA17_Chr2g0325281	44.767	344	176	1	556	899	253	582	1.23e-59	217

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338090	AT5G27220.4	27.787	601	346	20	751	1315	252	800	3.50e-14	78.6
Msa0338090	AT5G27220.2	27.787	601	346	20	751	1315	252	800	3.50e-14	78.6
Msa0338090	AT5G27220.1	27.787	601	346	20	751	1315	252	800	6.41e-14	77.8
Msa0338090	AT5G27220.3	27.787	601	346	20	751	1315	252	800	6.41e-14	77.8

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Find 287 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGCATTTCAAAACT+TGG	0.405649	2_4:-58246568	Msa0338090:CDS
AAAATTGCCGTGGAGCTGTT+TGG	0.424002	2_4:-58243114	Msa0338090:CDS
AAACTCTGTTTGCAAAACCC+AGG	0.651184	2_4:+58243088	None:intergenic
AAAGCAGCAGTAAATTCCAT+AGG	0.527911	2_4:+58241752	None:intergenic
AAAGGAGCATTTCAAAACTT+GGG	0.539886	2_4:-58246567	Msa0338090:CDS
AAATAAGCTAATGTAAGAAA+TGG	0.371185	2_4:-58241899	Msa0338090:three_prime_UTR
AACAATTGCTGAACTTGCTT+TGG	0.297042	2_4:-58246905	Msa0338090:CDS
AACCAACTCCGTTGAAATCA+AGG	0.446102	2_4:-58242185	Msa0338090:intron
AACCTTGATTTCAACGGAGT+TGG	0.457408	2_4:+58242183	None:intergenic
AAGAGAAGCAGTGTGAAGAA+CGG	0.600821	2_4:-58246694	Msa0338090:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAGAACTTAATCAAGTCA+AGG	-	chr2_4:58242160-58242179	Msa0338090:intron	30.0%
CAGAAAAGTTAGAATCTGAA+AGG	-	chr2_4:58242357-58242376	Msa0338090:intron	30.0%
GAATAGTATTGCTCAAATGA+AGG	-	chr2_4:58242412-58242431	Msa0338090:intron	30.0%
TTGATTCAAATTCTTTCGCA+CGG	+	chr2_4:58242552-58242571	None:intergenic	30.0%
TGCGAAAGAATTTGAATCAA+AGG	-	chr2_4:58242552-58242571	Msa0338090:intron	30.0%
AGAATTTGAATCAAAGGAGA+AGG	-	chr2_4:58242558-58242577	Msa0338090:intron	30.0%
TCAAAAGAGAGAGAATTTGA+AGG	-	chr2_4:58243147-58243166	Msa0338090:CDS	30.0%
TCAAAAGAGAGTCAATTTGA+AGG	-	chr2_4:58243231-58243250	Msa0338090:CDS	30.0%
AGAGTTTCAATCAAAAGAAG+AGG	-	chr2_4:58243263-58243282	Msa0338090:CDS	30.0%
TCAAAAGAGAGTCAATTTGA+AGG	-	chr2_4:58243231-58243250	Msa0338090:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	58241628	58247576	58241628	ID=Msa0338090;Name=Msa0338090
chr2_4	mRNA	58241628	58247576	58241628	ID=Msa0338090-mRNA-1;Parent=Msa0338090;Name=Msa0338090-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0\|0.6\|0.5\|1\|1\|1\|6\|305\|1422
chr2_4	exon	58241628	58242073	58241628	ID=Msa0338090-mRNA-1:exon:17856;Parent=Msa0338090-mRNA-1
chr2_4	exon	58242186	58242358	58242186	ID=Msa0338090-mRNA-1:exon:17855;Parent=Msa0338090-mRNA-1
chr2_4	exon	58243085	58243579	58243085	ID=Msa0338090-mRNA-1:exon:17854;Parent=Msa0338090-mRNA-1
chr2_4	exon	58244029	58246673	58244029	ID=Msa0338090-mRNA-1:exon:17853;Parent=Msa0338090-mRNA-1
chr2_4	exon	58246694	58247124	58246694	ID=Msa0338090-mRNA-1:exon:17852;Parent=Msa0338090-mRNA-1
chr2_4	exon	58247193	58247576	58247193	ID=Msa0338090-mRNA-1:exon:17851;Parent=Msa0338090-mRNA-1
chr2_4	CDS	58247193	58247576	58247193	ID=Msa0338090-mRNA-1:cds;Parent=Msa0338090-mRNA-1
chr2_4	CDS	58246694	58247124	58246694	ID=Msa0338090-mRNA-1:cds;Parent=Msa0338090-mRNA-1
chr2_4	CDS	58244029	58246673	58244029	ID=Msa0338090-mRNA-1:cds;Parent=Msa0338090-mRNA-1
chr2_4	CDS	58243085	58243579	58243085	ID=Msa0338090-mRNA-1:cds;Parent=Msa0338090-mRNA-1
chr2_4	CDS	58242186	58242358	58242186	ID=Msa0338090-mRNA-1:cds;Parent=Msa0338090-mRNA-1
chr2_4	CDS	58241933	58242073	58241933	ID=Msa0338090-mRNA-1:cds;Parent=Msa0338090-mRNA-1
chr2_4	three_prime_UTR	58241628	58241932	58241628	ID=Msa0338090-mRNA-1:three_prime_utr;Parent=Msa0338090-mRNA-1

Gene Sequence

>Msa0338090

ATGGATTTTGAGCCTTCTGATGATGGGAGGGAAACTGTTCCTTTGTTACCAACGTTTTCCCGGGTTTCGAGTTTCGAAAAATGTAGTAGTAGTAGTGCTGTTAGAAAGAGGGGTTCTGAGTTTGATGACAACAATTCATTGCATATTTCTGTTAAGAAATCAAAGTTGTTGCCCTACGACGATCACGACAAAGATGGACATGATATTTCATTGTCGAAGAAATTGACTGATAAATCATTTTCCTCGCTGAAGAAAGACCTTACGTTGTTAGAACAATTATTTGCGGAATGTAAAAGGAAGCAGAAAGTTGAAGTGAAGAGATTACAGTCCATAAAGAGAGATACTGAAGAGTGCTTCAAAGAGCTTCAAATTAAGAAGAAGCAAGAGTTTGTAGTGAAAGAAGAGGAGCTCTATTTGATGGAAAACTTGATTAAAGAGAGCAAGCTTGAGCTCAAGGCAAAAGAGATAGAACTTAATCAAGTCAAGGGTAACATTTCAAAAGAAATAGAACTTCGTCAAGTCATTGATAACATTGATAAGGACCGTGAAAGGAAGGAACAGGAACTCAAGGCTCTTTCCCAAACAATTGCTGAACTTGCTTTGGACTGTAAGGCCAAAGAGAACGAGCTTGATGCAGTTAACAAATTAATTGGTGAACAAGCAGAAAAGTTAGAATCTGAAAGGAAGAAGGCAATAAATATAATATCAGACATGAAGAATAGTATTGCTCAAATGAAGGAATTTGAGTCAAAGCAGAAGCGATTTGATGATCGGTTTAAGGAACTTGAGTCAAAGAGAAGCAGTGTGAAGAACGGAGAGAAGCAGCTTGAAGGCCGTGCGAAAGAATTTGAATCAAAGGAGAAGGAACTTGAAGGTCGTATGAATGAGCTTGAATCAGAAAAGGAGCATTTCAAAACTTGGGTGAAGGAGCTTGATACAAAAGAGAAGCAAGTTGAAGGACGAGCAATGAAGCTAGTGTTAAAAGAGAAGCAGAGTGAAGGACGAGCGCAGGAGCTTCAGTCGAAGGAGAAGCACTTTGAAGAATGGGCAAAGAAGCTGGAGTCAAGAGAGAAGCAGCTTGATGTCCGTTTGATTGAATTTGAATTAAACGAGAAGGAACTTGAAGGTCGTATGAATGAGCGTGATAAAAAAGAGAAGCAAGTTGAAGGACGAGCAATAGAGCTAGAGTCAAAAGTGGTGCAACATGAAGGCCGGGTGAAGGAGTTTGAATCAAAGGAGAAGGAATTTGATGGCCGGGTGGAATCTAAAAAGAAGCATTTCGAAAGCATGATGGAGGAGCTCAAATCAAGAATGAGTTCGTTGAAAGGACAAGTTGAGGAACTTGACTCTAAAGAGAAGCAACTTGATGTCCATGTGAAGGAGCTGGAATCTAAAAGGAACCACTTCGAAAGACAGGTGAAGGAGTTTGAATCAAAAGAGAGAGAATTTGAAGGCCAAATGAAGGATTTGGAATCAGGAAGGAAGCATTTTGAAAGCCAAGTGGACGAGCTCAATTCAAAAGAGAGTCAATTTGAAGGACGGGTGAAAGAGTTTCAATCAAAAGAAGAGGAATTTAAAGGTCAAGTGAAGGAGTTTGAATCAAAGAAGGAGGAATTTGAAGGTCGATTGAAGGAGCATGGATCAAAGGAGGAGGAACTTGAACGCCGAGTGAAGGATTTTGAATCAGGAAGGAAGCATTTTGATAACCAAGTGGACGAGCTCAAGTCAAAAGAGAGTCAATTTGAAGGACAGGTGAAGGAGTTTCAATCAAAAGAGGAGGAATTTAAAGGTCAAGTGAAGGAGTTTGAATCAAAGAAGGAGGAATTTGAAGGTCGATTGAAGGAGCATGAATCAAAGGAGGAGGAACTTGAAGGCCGAGTGAAGGATTTTGAATCAGGAAGGAAGCATTTTGAGAGCCAAGTGGACCAGCTCAAGTCAAAAGAGAGGCAATTTGAAGGACTGGTGAAGGAGTTTCAATCACAAGAGGAGGAATTTAAAGGTCAAGTGAAGGAGTTTGAATCAAAGAAGGAGGAATTTGAAGGTCGATTGAAGGAGCATGAATCAAAGGAGGAGGAACTTGAAGGCCGAGTGAAGGATTTTGAATCAGGAAGGAAGCATTTTGAAAGCCAAGTGGACCAGCTCAAGTCAAAAGAGAGGCAATTTGAAGGACTGGTGAAGGAGTTTCAATCACAAGAGGAGGAATTTAAAGATCAAGTGAAGGAGTTTGAATCAAAGAAGGAGGAATTTGAAGGTCGATTGAAGGAGCATGAATCAAAGGAGGAGGAACTTGAAGGCCGAGTGAAGGATTTTGAATCAGGAAGGAAGCATTTTGAAAGCCAAGTGGACCAGCTCAAGTCAAAAGAGAGGCAATTTGAAGGACTCGTGAAGGAGTTTCAATCAAAAGAGGAGGAATTTAAAGGTCAAGTGAAGGAGTTTGAATCAAAGAAGGAGGAATTTGAAGGTCGATTGAAGGAGCGTGAATCAAAGGAGAAGGAATTTGAAGGCCGAGTGAAGGAGCTGGAATCTAAAAGGGAGCATTTCGAAAGCATGAGGAAGGAGCTCAAATCAAAATTGAGGCCATTGATAGAACAAGCTAAGGAACTTGACTCTAAAGAGAAGCAACTTGATAGCCAAGTGAAGGAGCTGGAATCTAAAAAGAAGCTGTTTGAAAGCCAAGTGAAGGAGTTACAGTCTAAAGATAACCAACTTGTAGGCCAATTGAAGAAGTTTAAATCAAACCAGAGGGAATTTGAAGGCCAAGCGAAGCAGCTGGAATCTAAAAGGAAGCATTTCGAAAGCCAAATGAAGAAATTTGAGTCTAAAGAGAAGCAACTTGAAGGCCGAGTGAAGGAGCATAAATCAAAAGAGAGAGGATTCGAAGGCCAACTGAAGGAACTGGAATCTAAAAAGAAGCATTTTGAAAATCAAGTGGAGGAGTTCAAATCAAAACAGAAGCAATTGAAAGGACAGGTTAAGGAACTTGAGTCTAAAGAGAAGCATTTTGATGGCCGAGTGAAGGAGCTTGAATCTAAAGAGGATGACTTTGAAGGCCGAGTGAAGAAGCATGAATCAAAAGAGAGAGAATTTGAAATTCTAGTGAAGGAGCTGCAATCTAAAAAGAAGCAAGTTGAAAACCAAGTTGAGTTAGAGTCAAAAGATAACCAACTTATATGCAAAATAAAGGAGTTTGAATCAAAAGAGAAGGAATTTGAAGAACAAGTGAAGGGCATAAAATCAATGGAGGAGGAACTCGAATCAAAAAAGAAGCATTTCGAAAGCCAAGTTGAGGACTTTAAATCAAAAGAGAAGCAATTTGAAGAACGATGGAATAAACTTGAGTCAGAAGAGAATAAGTTCAAAGCAAAGGTGAAGGAGCTCAACTTACAAGAAAAGTGGTTTGAAGGACAAGTCAAGGATCCTGTGTCAAGGAAAAAATATATTGATGGGGAAAAAGAATCAGTTGCATCTTACATGGATGATCATTCAAGTCGTGCCTTTGGTGGAATAAGTTTGCAATTGGGCGCAAGCAAGAAAACTGATGGAGTTGAGTCACTTTTCAACGGTGTTTTAGTTAATCTGCAAGAATCATCCGATCCATCAAAACTTGTTTTGGAAATGATACTGAACCCCATAATTCCAGAGGGTCAAAAGGGAGATAATGTGATTATTACTGATTACCAAATCTATCTGCTGGAACAACTGCTGAGAATCTCACCAGATATTGAACCTTGTGAGAGAGAAAAAGCATTGAAGCTAGCATATGATTTAAAAGAAAACATGAAAGACAATACTGAAAATTCTTTGGCGGTTCTTGCTTTTCTGCTGCTTTTGTCAATTTATAAATTGCTTGATTCTTTCGATGAAGATGAAGTTCTGGATCTTTTTGCACCTGTTGCTCTGCACAAAATTGCCGTGGAGCTGTTTGGATGCCTGGGTTTTGCAAACAGAGTTTCTGATTTTGTTAAGCGTCTTATCATGAGGAAGCAAATTGTTGAAGCTGTTCAATTCAGTTGTGCATATAACTTGACTGACAAGGATCAATTAGTTGATATGTTGCGAGAACACGTCCAGAATGCCAAACTGATTTGTGAGAGCAGTTGCAAGAAAACCAACTCCGTTGAAATCAAGGATCAGGCCAGAGATCAAGAAATTGCTAGTCTGGGGACTGTTCTACAATGCATTTCGGACAACAGCCTAGAATCTGCGGGTCTGCTTCATAAGGAGATCGACTATCGCATTCTTGAGCTAAAAGCACATAAAGGTTTTTAG

Protein sequence

>Msa0338090

MDFEPSDDGRETVPLLPTFSRVSSFEKCSSSSAVRKRGSEFDDNNSLHISVKKSKLLPYDDHDKDGHDISLSKKLTDKSFSSLKKDLTLLEQLFAECKRKQKVEVKRLQSIKRDTEECFKELQIKKKQEFVVKEEELYLMENLIKESKLELKAKEIELNQVKGNISKEIELRQVIDNIDKDRERKEQELKALSQTIAELALDCKAKENELDAVNKLIGEQAEKLESERKKAINIISDMKNSIAQMKEFESKQKRFDDRFKELESKRSSVKNGEKQLEGRAKEFESKEKELEGRMNELESEKEHFKTWVKELDTKEKQVEGRAMKLVLKEKQSEGRAQELQSKEKHFEEWAKKLESREKQLDVRLIEFELNEKELEGRMNERDKKEKQVEGRAIELESKVVQHEGRVKEFESKEKEFDGRVESKKKHFESMMEELKSRMSSLKGQVEELDSKEKQLDVHVKELESKRNHFERQVKEFESKEREFEGQMKDLESGRKHFESQVDELNSKESQFEGRVKEFQSKEEEFKGQVKEFESKKEEFEGRLKEHGSKEEELERRVKDFESGRKHFDNQVDELKSKESQFEGQVKEFQSKEEEFKGQVKEFESKKEEFEGRLKEHESKEEELEGRVKDFESGRKHFESQVDQLKSKERQFEGLVKEFQSQEEEFKGQVKEFESKKEEFEGRLKEHESKEEELEGRVKDFESGRKHFESQVDQLKSKERQFEGLVKEFQSQEEEFKDQVKEFESKKEEFEGRLKEHESKEEELEGRVKDFESGRKHFESQVDQLKSKERQFEGLVKEFQSKEEEFKGQVKEFESKKEEFEGRLKERESKEKEFEGRVKELESKREHFESMRKELKSKLRPLIEQAKELDSKEKQLDSQVKELESKKKLFESQVKELQSKDNQLVGQLKKFKSNQREFEGQAKQLESKRKHFESQMKKFESKEKQLEGRVKEHKSKERGFEGQLKELESKKKHFENQVEEFKSKQKQLKGQVKELESKEKHFDGRVKELESKEDDFEGRVKKHESKEREFEILVKELQSKKKQVENQVELESKDNQLICKIKEFESKEKEFEEQVKGIKSMEEELESKKKHFESQVEDFKSKEKQFEERWNKLESEENKFKAKVKELNLQEKWFEGQVKDPVSRKKYIDGEKESVASYMDDHSSRAFGGISLQLGASKKTDGVESLFNGVLVNLQESSDPSKLVLEMILNPIIPEGQKGDNVIITDYQIYLLEQLLRISPDIEPCEREKALKLAYDLKENMKDNTENSLAVLAFLLLLSIYKLLDSFDEDEVLDLFAPVALHKIAVELFGCLGFANRVSDFVKRLIMRKQIVEAVQFSCAYNLTDKDQLVDMLREHVQNAKLICESSCKKTNSVEIKDQARDQEIASLGTVLQCISDNSLESAGLLHKEIDYRILELKAHKGF*