Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338880 | XP_013452663.1 | 100.000 | 168 | 0 | 0 | 1 | 168 | 1 | 168 | 4.76e-118 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338880 | sp|Q9LZD7|MED7B_ARATH | 77.976 | 168 | 37 | 0 | 1 | 168 | 1 | 168 | 1.64e-88 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0338880 | TR | MED7 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0301430 | Msa0338880 | 0.989958 | 2.058527e-180 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338880 | MtrunA17_Chr6g0478701 | 100.000 | 168 | 0 | 0 | 1 | 168 | 1 | 168 | 4.37e-122 | 340 |
| Msa0338880 | MtrunA17_Chr2g0326811 | 99.405 | 168 | 1 | 0 | 1 | 168 | 1 | 168 | 1.46e-121 | 339 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338880 | AT5G03500.6 | 77.976 | 168 | 37 | 0 | 1 | 168 | 11 | 178 | 1.67e-89 | 259 |
| Msa0338880 | AT5G03500.3 | 77.976 | 168 | 37 | 0 | 1 | 168 | 1 | 168 | 1.67e-89 | 259 |
| Msa0338880 | AT5G03500.4 | 77.976 | 168 | 37 | 0 | 1 | 168 | 1 | 168 | 1.67e-89 | 259 |
| Msa0338880 | AT5G03500.2 | 77.976 | 168 | 37 | 0 | 1 | 168 | 1 | 168 | 1.67e-89 | 259 |
| Msa0338880 | AT5G03500.5 | 77.976 | 168 | 37 | 0 | 1 | 168 | 1 | 168 | 1.67e-89 | 259 |
| Msa0338880 | AT5G03500.7 | 77.976 | 168 | 37 | 0 | 1 | 168 | 1 | 168 | 1.67e-89 | 259 |
| Msa0338880 | AT5G03500.1 | 77.976 | 168 | 37 | 0 | 1 | 168 | 1 | 168 | 1.67e-89 | 259 |
| Msa0338880 | AT5G03220.1 | 79.167 | 168 | 35 | 0 | 1 | 168 | 1 | 168 | 1.75e-84 | 246 |
Find 73 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAACTAACTATGCTTTAA+TGG | 0.159768 | 2_4:-59565108 | None:intergenic |
| AGCAACTCTGATTCACATTT+TGG | 0.181104 | 2_4:+59563886 | Msa0338880:CDS |
| AGAATTGCAACTACACATTT+TGG | 0.197843 | 2_4:+59563634 | Msa0338880:CDS |
| GTTATTTAGTGAAACCTTAA+AGG | 0.212541 | 2_4:-59565183 | None:intergenic |
| AGTTGCACTAACCTCCTTTA+AGG | 0.228687 | 2_4:+59565169 | Msa0338880:three_prime_UTR |
| TTCTCTTCGTCTCTCTTTCT+CGG | 0.270949 | 2_4:-59560098 | None:intergenic |
| CACCACCACCACCTTATTAC+AGG | 0.297273 | 2_4:+59561039 | Msa0338880:CDS |
| AAGGAGCTGAGGTCACTTAA+TGG | 0.305351 | 2_4:+59563611 | Msa0338880:CDS |
| TAAGATAGCCTACCAATATT+AGG | 0.320366 | 2_4:-59562811 | None:intergenic |
| GGTGCTTAATTTAAAATTAG+AGG | 0.323185 | 2_4:-59565216 | None:intergenic |
| GAAGGAACTTATATTTGTTT+CGG | 0.355999 | 2_4:+59561119 | Msa0338880:CDS |
| GACAATCATGGCAACCTTAA+GGG | 0.370574 | 2_4:+59565144 | Msa0338880:three_prime_UTR |
| GATGCATCTATGATCTTTGA+AGG | 0.371929 | 2_4:+59560974 | Msa0338880:five_prime_UTR |
| GAATTCTCTGCGTCCTCATC+AGG | 0.376395 | 2_4:+59563748 | Msa0338880:CDS |
| GTGATGCGCCGGCAAGGTTC+CGG | 0.379470 | 2_4:-59560171 | None:intergenic |
| GGAGGCTCTGGAGCAGACTC+AGG | 0.379890 | 2_4:-59561086 | None:intergenic |
| AGACAATCATGGCAACCTTA+AGG | 0.382744 | 2_4:+59565143 | Msa0338880:three_prime_UTR |
| CACACTAGCCGGAACCTTGC+CGG | 0.391574 | 2_4:+59560163 | Msa0338880:five_prime_UTR |
| AAGCTGTGGAGGACATAAAT+AGG | 0.396665 | 2_4:+59563933 | Msa0338880:CDS |
| TCAATCGGTGGTGGAGGCTC+TGG | 0.403322 | 2_4:-59561098 | None:intergenic |
| GAGTCATTGGCAACACTTGA+TGG | 0.406036 | 2_4:+59565085 | Msa0338880:CDS |
| CTGGAGCAGACTCAGGGTCC+TGG | 0.414763 | 2_4:-59561079 | None:intergenic |
| TATTCTAAAGGACCTAATAT+TGG | 0.416061 | 2_4:+59562799 | Msa0338880:CDS |
| ACTTATACAAATTTGAATCA+TGG | 0.424889 | 2_4:+59565298 | Msa0338880:three_prime_UTR |
| GTGCTTAATTTAAAATTAGA+GGG | 0.429823 | 2_4:-59565215 | None:intergenic |
| GTTAGTGCAACTTTCCCTTA+AGG | 0.430898 | 2_4:-59565158 | None:intergenic |
| CATTAAAGCATAGTTAGTTA+TGG | 0.435204 | 2_4:+59565109 | Msa0338880:exon |
| CTGTAATAAGGTGGTGGTGG+TGG | 0.437759 | 2_4:-59561038 | None:intergenic |
| TCTTTGTAAAGCCTGTAATA+AGG | 0.439294 | 2_4:-59561050 | None:intergenic |
| ATTAACAACAACTAACCATA+AGG | 0.461646 | 2_4:-59565237 | None:intergenic |
| GTGTTGCCAATGACTCGTTA+AGG | 0.463201 | 2_4:-59565078 | None:intergenic |
| AGAAAGAGAGACGAAGAGAA+AGG | 0.469004 | 2_4:+59560101 | Msa0338880:five_prime_UTR |
| TGTTAATAAACAAACACAAA+TGG | 0.469665 | 2_4:+59565253 | Msa0338880:three_prime_UTR |
| ACTCCTTGTTCTTCCAAGCT+TGG | 0.471721 | 2_4:-59562766 | None:intergenic |
| AAGAATCCTTAACGAGTCAT+TGG | 0.477983 | 2_4:+59565072 | Msa0338880:CDS |
| CAAATATAAGTTCCTTCAAT+CGG | 0.478209 | 2_4:-59561113 | None:intergenic |
| GAGCCTCCACCACCGATTGA+AGG | 0.480913 | 2_4:+59561101 | Msa0338880:CDS |
| TCTTTGTTGATTTGATGAAA+AGG | 0.492329 | 2_4:-59565332 | None:intergenic |
| GGTGGTGAGATCGAGAGAGC+TGG | 0.506044 | 2_4:-59560135 | None:intergenic |
| GAAAGAGAGACGAAGAGAAA+GGG | 0.506564 | 2_4:+59560102 | Msa0338880:five_prime_UTR |
| TAGGTCCTTTAGAATAGAGT+TGG | 0.518443 | 2_4:-59562792 | None:intergenic |
| ACTCTCCTTGCATATTGTGA+TGG | 0.520397 | 2_4:-59563683 | None:intergenic |
| TCCGGCTAGTGTGAAGGCGG+TGG | 0.521072 | 2_4:-59560153 | None:intergenic |
| GTTCCTTCAATCGGTGGTGG+AGG | 0.523884 | 2_4:-59561104 | None:intergenic |
| GAGGCTCTGGAGCAGACTCA+GGG | 0.526066 | 2_4:-59561085 | None:intergenic |
| TAGTGATGTTCTACCAAGCT+TGG | 0.528638 | 2_4:+59562753 | Msa0338880:CDS |
| GTACGCCAACTCTATTCTAA+AGG | 0.536469 | 2_4:+59562787 | Msa0338880:CDS |
| TCAATAAACAAAGACAATCA+TGG | 0.545525 | 2_4:+59565132 | Msa0338880:three_prime_UTR |
| TGTAATAAGGTGGTGGTGGT+GGG | 0.546044 | 2_4:-59561037 | None:intergenic |
| GAGGACGCAGAGAATTCAAA+AGG | 0.547381 | 2_4:-59563742 | None:intergenic |
| GTCGGAGTGATGCGCCGGCA+AGG | 0.551219 | 2_4:-59560177 | None:intergenic |
| CACTTGTCGGAGTGATGCGC+CGG | 0.552056 | 2_4:-59560182 | None:intergenic |
| TGTTGATTTGATGAAAAGGA+CGG | 0.552315 | 2_4:-59565328 | None:intergenic |
| CAAGGTTCCGGCTAGTGTGA+AGG | 0.557381 | 2_4:-59560159 | None:intergenic |
| TAAGTTCCTTCAATCGGTGG+TGG | 0.561411 | 2_4:-59561107 | None:intergenic |
| GGAACTTATATTTGTTTCGG+AGG | 0.567063 | 2_4:+59561122 | Msa0338880:CDS |
| ACCACCGCCTTCACACTAGC+CGG | 0.569220 | 2_4:+59560152 | Msa0338880:five_prime_UTR |
| GTGGTGAGATCGAGAGAGCT+GGG | 0.574777 | 2_4:-59560134 | None:intergenic |
| TGCTTAATTTAAAATTAGAG+GGG | 0.576810 | 2_4:-59565214 | None:intergenic |
| CTACCAAGCTTGGAAGAACA+AGG | 0.582575 | 2_4:+59562763 | Msa0338880:CDS |
| AGCCTGTAATAAGGTGGTGG+TGG | 0.598331 | 2_4:-59561041 | None:intergenic |
| ATTTAGTGAAACCTTAAAGG+AGG | 0.601516 | 2_4:-59565180 | None:intergenic |
| GCTTAATTTAAAATTAGAGG+GGG | 0.608508 | 2_4:-59565213 | None:intergenic |
| TAGATTTCAAGAAGGAGCTG+AGG | 0.608725 | 2_4:+59563600 | Msa0338880:intron |
| AGAACGTCGTAAACAAGCTG+TGG | 0.618675 | 2_4:+59563919 | Msa0338880:CDS |
| AGAGACCATCACAATATGCA+AGG | 0.622612 | 2_4:+59563678 | Msa0338880:CDS |
| AGATCATTGTATACCTGATG+AGG | 0.623348 | 2_4:-59563761 | None:intergenic |
| ATATAAGTTCCTTCAATCGG+TGG | 0.635000 | 2_4:-59561110 | None:intergenic |
| GCTTTACAAAGATTACGTCC+AGG | 0.635871 | 2_4:+59561061 | Msa0338880:CDS |
| TTGTAAAGCCTGTAATAAGG+TGG | 0.646875 | 2_4:-59561047 | None:intergenic |
| TAAAGCCTGTAATAAGGTGG+TGG | 0.655388 | 2_4:-59561044 | None:intergenic |
| GGTTCCGGCTAGTGTGAAGG+CGG | 0.659319 | 2_4:-59560156 | None:intergenic |
| ACGTCGTAAACAAGCTGTGG+AGG | 0.660694 | 2_4:+59563922 | Msa0338880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTATGTGTAATTTAA+TGG | + | chr2_4:59561328-59561347 | Msa0338880:intron | 10.0% |
| !! | TGAAATTAAAAAAAAAAATC+AGG | - | chr2_4:59563973-59563992 | None:intergenic | 10.0% |
| !!! | TGTTATTCATATTTTAATTA+TGG | + | chr2_4:59564403-59564422 | Msa0338880:intron | 10.0% |
| !!! | TATCATTATTACTTTGATTT+TGG | + | chr2_4:59560325-59560344 | Msa0338880:intron | 15.0% |
| !!! | AATTAGTATTTATTTTTACC+TGG | + | chr2_4:59561353-59561372 | Msa0338880:intron | 15.0% |
| !!! | ATAACAGCTTTTTTTTTAAA+GGG | - | chr2_4:59561888-59561907 | None:intergenic | 15.0% |
| !!! | TATAACAGCTTTTTTTTTAA+AGG | - | chr2_4:59561889-59561908 | None:intergenic | 15.0% |
| !! | AAAGGAAAAAAATAATGTTA+TGG | - | chr2_4:59562096-59562115 | None:intergenic | 15.0% |
| !!! | TTTTATAAACTACTTAAATG+TGG | - | chr2_4:59562223-59562242 | None:intergenic | 15.0% |
| !! | ATGAAACAAATTTCAATAAA+GGG | - | chr2_4:59562383-59562402 | None:intergenic | 15.0% |
| !! | TATAATGAAAATTTCAGAAA+CGG | - | chr2_4:59563842-59563861 | None:intergenic | 15.0% |
| !! | ATATCATGTATTTACTTTAT+AGG | + | chr2_4:59563859-59563878 | Msa0338880:intron | 15.0% |
| !!! | ATTCATATTTTAATTATGGA+AGG | + | chr2_4:59564407-59564426 | Msa0338880:intron | 15.0% |
| !!! | AAAAAGTACAATCTATATAA+AGG | - | chr2_4:59564436-59564455 | None:intergenic | 15.0% |
| !! | AATGTAGTTAAAATTGATAA+TGG | + | chr2_4:59564673-59564692 | Msa0338880:intron | 15.0% |
| !!! | TAATTTTTTTATGATACGTA+TGG | + | chr2_4:59564973-59564992 | Msa0338880:intron | 15.0% |
| !!! | TTTGAATAATTCTAAAACAG+CGG | - | chr2_4:59560226-59560245 | None:intergenic | 20.0% |
| !! | AGTAATAATGATAGTTTACA+AGG | - | chr2_4:59560318-59560337 | None:intergenic | 20.0% |
| !!! | AAAAAATCACGTTTTAGATT+GGG | - | chr2_4:59560479-59560498 | None:intergenic | 20.0% |
| !!! | AAAAAAATCACGTTTTAGAT+TGG | - | chr2_4:59560480-59560499 | None:intergenic | 20.0% |
| !!! | CAATTAGAAGATTTTTGTTA+TGG | + | chr2_4:59561001-59561020 | Msa0338880:exon | 20.0% |
| !! | TAATGATATCAAAATTGCAA+GGG | - | chr2_4:59561171-59561190 | None:intergenic | 20.0% |
| !! | ATAATGATATCAAAATTGCA+AGG | - | chr2_4:59561172-59561191 | None:intergenic | 20.0% |
| !!! | TTGCAATTTTGATATCATTA+TGG | + | chr2_4:59561171-59561190 | Msa0338880:intron | 20.0% |
| !!! | AATTAGTTTAACATAGCTTA+TGG | - | chr2_4:59561583-59561602 | None:intergenic | 20.0% |
| !!! | AAAAAAGTTTCACTATGTTT+TGG | + | chr2_4:59561645-59561664 | Msa0338880:intron | 20.0% |
| !!! | ATTGTAATTAAGTGTTTCTA+GGG | - | chr2_4:59561720-59561739 | None:intergenic | 20.0% |
| !! | TATTGTAATTAAGTGTTTCT+AGG | - | chr2_4:59561721-59561740 | None:intergenic | 20.0% |
| !! | TAATTACAATATTTATCCGA+AGG | + | chr2_4:59561730-59561749 | Msa0338880:intron | 20.0% |
| !! | AATTACAATATTTATCCGAA+GGG | + | chr2_4:59561731-59561750 | Msa0338880:intron | 20.0% |
| !!! | TAATGTTATGGAATACTTTT+GGG | - | chr2_4:59562084-59562103 | None:intergenic | 20.0% |
| !!! | ATAATGTTATGGAATACTTT+TGG | - | chr2_4:59562085-59562104 | None:intergenic | 20.0% |
| !! | AAGTAGTTTATAAAAAGTAG+TGG | + | chr2_4:59562228-59562247 | Msa0338880:intron | 20.0% |
| !! | AGTAGTTTATAAAAAGTAGT+GGG | + | chr2_4:59562229-59562248 | Msa0338880:intron | 20.0% |
| !! | CATGAAACAAATTTCAATAA+AGG | - | chr2_4:59562384-59562403 | None:intergenic | 20.0% |
| !! | ATTTGTTTCATGAGAATTAA+AGG | + | chr2_4:59562392-59562411 | Msa0338880:intron | 20.0% |
| !! | TTAAACTCTAAATTGATTGT+AGG | + | chr2_4:59562426-59562445 | Msa0338880:intron | 20.0% |
| !! | TAAACTCTAAATTGATTGTA+GGG | + | chr2_4:59562427-59562446 | Msa0338880:intron | 20.0% |
| !! | TAGGAATGATATCATTAAAT+AGG | + | chr2_4:59562455-59562474 | Msa0338880:intron | 20.0% |
| !!! | TTGTTTCACATTTTTCATTT+AGG | + | chr2_4:59563328-59563347 | Msa0338880:intron | 20.0% |
| !! | AAAAAGATTACAAAAAGAGA+AGG | - | chr2_4:59563355-59563374 | None:intergenic | 20.0% |
| !!! | TTTTTCCGTTTATATATACA+TGG | + | chr2_4:59563371-59563390 | Msa0338880:intron | 20.0% |
| !!! | TTTTCCGTTTATATATACAT+GGG | + | chr2_4:59563372-59563391 | Msa0338880:intron | 20.0% |
| !!! | ATTTTTTTCTTCAGACAAAA+AGG | - | chr2_4:59563419-59563438 | None:intergenic | 20.0% |
| !! | ATAATGAAAATTTCAGAAAC+GGG | - | chr2_4:59563841-59563860 | None:intergenic | 20.0% |
| !!! | TTAGTTCATTCTTTTGAAAA+TGG | + | chr2_4:59564074-59564093 | Msa0338880:intron | 20.0% |
| !! | AACATGTAGAAATAAGAATT+AGG | - | chr2_4:59564281-59564300 | None:intergenic | 20.0% |
| !!! | TTATTGAAAGAATTGATTTC+TGG | + | chr2_4:59564557-59564576 | Msa0338880:intron | 20.0% |
| !!! | TGCTTAATTTAAAATTAGAG+GGG | - | chr2_4:59565217-59565236 | None:intergenic | 20.0% |
| !!! | GTGCTTAATTTAAAATTAGA+GGG | - | chr2_4:59565218-59565237 | None:intergenic | 20.0% |
| !!! | ATTTTAAATTAAGCACCTTA+TGG | + | chr2_4:59565222-59565241 | Msa0338880:three_prime_UTR | 20.0% |
| !! | TGTTAATAAACAAACACAAA+TGG | + | chr2_4:59565253-59565272 | Msa0338880:three_prime_UTR | 20.0% |
| !!! | AAATGGTGTTTTTATGTTTT+GGG | + | chr2_4:59565270-59565289 | Msa0338880:three_prime_UTR | 20.0% |
| !! | ACTTATACAAATTTGAATCA+TGG | + | chr2_4:59565298-59565317 | Msa0338880:three_prime_UTR | 20.0% |
| ! | CTAAAACTAAAAACTAGTTC+AGG | + | chr2_4:59560072-59560091 | Msa0338880:five_prime_UTR | 25.0% |
| ! | CTCACAATTCAATTATATTC+TGG | + | chr2_4:59560399-59560418 | Msa0338880:intron | 25.0% |
| ! | AACCCTAAATCTTAAAGATA+CGG | - | chr2_4:59560538-59560557 | None:intergenic | 25.0% |
| ! | GAGAATGTGTTAAAAAAATC+TGG | + | chr2_4:59560587-59560606 | Msa0338880:intron | 25.0% |
| !! | ATCTGGTTTGAAAAGAAAAT+CGG | + | chr2_4:59560604-59560623 | Msa0338880:intron | 25.0% |
| !!! | AAAGAAAATCGGTTTGAATT+TGG | + | chr2_4:59560615-59560634 | Msa0338880:intron | 25.0% |
| !! | TTAACCAGTTTTTGTTAAAG+TGG | + | chr2_4:59560706-59560725 | Msa0338880:intron | 25.0% |
| ! | AAAACCACTTTAACAAAAAC+TGG | - | chr2_4:59560713-59560732 | None:intergenic | 25.0% |
| ! | ACTGAACTGAATTGTATTAA+CGG | - | chr2_4:59560752-59560771 | None:intergenic | 25.0% |
| ! | CAAATATAAGTTCCTTCAAT+CGG | - | chr2_4:59561116-59561135 | None:intergenic | 25.0% |
| ! | GAAGGAACTTATATTTGTTT+CGG | + | chr2_4:59561119-59561138 | Msa0338880:CDS | 25.0% |
| !! | AAGCAAATAAAAGCTCTTTT+GGG | - | chr2_4:59561440-59561459 | None:intergenic | 25.0% |
| ! | TAGAAAGATAAGGTCAAAAT+AGG | - | chr2_4:59561521-59561540 | None:intergenic | 25.0% |
| ! | ATTACAATATTTATCCGAAG+GGG | + | chr2_4:59561732-59561751 | Msa0338880:intron | 25.0% |
| ! | GGAAATCTTAACCAAATAAT+TGG | - | chr2_4:59561867-59561886 | None:intergenic | 25.0% |
| ! | ATAATATTGTCGTCTAAACA+TGG | + | chr2_4:59561906-59561925 | Msa0338880:intron | 25.0% |
| ! | TAATATTGTCGTCTAAACAT+GGG | + | chr2_4:59561907-59561926 | Msa0338880:intron | 25.0% |
| ! | CTATTTACTATCTAGTTGTT+TGG | + | chr2_4:59561932-59561951 | Msa0338880:intron | 25.0% |
| !!! | TTTGGCATGTAATTTTTTTG+TGG | + | chr2_4:59561950-59561969 | Msa0338880:intron | 25.0% |
| !!! | AATTTTTTTGTGGTTGTGAT+CGG | + | chr2_4:59561960-59561979 | Msa0338880:intron | 25.0% |
| !!! | TTTCCATTTTTGAAGTCTTT+GGG | - | chr2_4:59562001-59562020 | None:intergenic | 25.0% |
| !!! | TTTTCCATTTTTGAAGTCTT+TGG | - | chr2_4:59562002-59562021 | None:intergenic | 25.0% |
| ! | CAATACTCATTTGATATTAC+CGG | + | chr2_4:59562043-59562062 | Msa0338880:intron | 25.0% |
| ! | ATGAACTAGAGAAATTTCAA+AGG | - | chr2_4:59562114-59562133 | None:intergenic | 25.0% |
| ! | AATTTCAATAAAGGGTAGTT+TGG | - | chr2_4:59562375-59562394 | None:intergenic | 25.0% |
| ! | TCATGAGAATTAAAGGTTAT+TGG | + | chr2_4:59562399-59562418 | Msa0338880:intron | 25.0% |
| !! | GTTAAGATTTGCGTATATTT+TGG | + | chr2_4:59562486-59562505 | Msa0338880:intron | 25.0% |
| !! | TGCTGTTTATAATCTTTATC+AGG | + | chr2_4:59562530-59562549 | Msa0338880:intron | 25.0% |
| !! | TATTCTAAAGGACCTAATAT+TGG | + | chr2_4:59562799-59562818 | Msa0338880:CDS | 25.0% |
| ! | AACCATCATAAAAGATTTAG+AGG | + | chr2_4:59562897-59562916 | Msa0338880:intron | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | chr2_4:59562937-59562956 | None:intergenic | 25.0% |
| !!! | TTCTTTTGATTAACCTCTTT+TGG | + | chr2_4:59563302-59563321 | Msa0338880:intron | 25.0% |
| ! | TTAATAATGCCTAAAAGATC+AGG | - | chr2_4:59563485-59563504 | None:intergenic | 25.0% |
| ! | TTAGGCATTATTAACTTCAT+AGG | + | chr2_4:59563491-59563510 | Msa0338880:intron | 25.0% |
| ! | TAGGCATTATTAACTTCATA+GGG | + | chr2_4:59563492-59563511 | Msa0338880:intron | 25.0% |
| ! | AAGGTAAGATGTTAACTATA+AGG | - | chr2_4:59563577-59563596 | None:intergenic | 25.0% |
| !! | ACCTTTTATAGATTTCAAGA+AGG | + | chr2_4:59563592-59563611 | Msa0338880:intron | 25.0% |
| ! | TCCTTCTTGAAATCTATAAA+AGG | - | chr2_4:59563596-59563615 | None:intergenic | 25.0% |
| ! | ATATAAACTTGCCTTTGATT+TGG | + | chr2_4:59563798-59563817 | Msa0338880:intron | 25.0% |
| ! | AATAAGTTAAGGTTGTTTAC+TGG | - | chr2_4:59564144-59564163 | None:intergenic | 25.0% |
| ! | TAAACAACCTTAACTTATTC+AGG | + | chr2_4:59564145-59564164 | Msa0338880:intron | 25.0% |
| ! | AAACAACCTTAACTTATTCA+GGG | + | chr2_4:59564146-59564165 | Msa0338880:intron | 25.0% |
| !!! | TCTCCTTGTATTTCTATTTT+GGG | - | chr2_4:59564191-59564210 | None:intergenic | 25.0% |
| !!! | ATCTCCTTGTATTTCTATTT+TGG | - | chr2_4:59564192-59564211 | None:intergenic | 25.0% |
| ! | GTAGAAATAAGAATTAGGAT+AGG | - | chr2_4:59564276-59564295 | None:intergenic | 25.0% |
| !! | TAACTTATGTTCTAGCTATT+AGG | - | chr2_4:59564347-59564366 | None:intergenic | 25.0% |
| ! | GTATTCCATTAGAAAAAGTT+TGG | - | chr2_4:59564724-59564743 | None:intergenic | 25.0% |
| ! | CATAACTAACTATGCTTTAA+TGG | - | chr2_4:59565111-59565130 | None:intergenic | 25.0% |
| ! | CATTAAAGCATAGTTAGTTA+TGG | + | chr2_4:59565109-59565128 | Msa0338880:exon | 25.0% |
| ! | TCAATAAACAAAGACAATCA+TGG | + | chr2_4:59565132-59565151 | Msa0338880:three_prime_UTR | 25.0% |
| ! | GTTATTTAGTGAAACCTTAA+AGG | - | chr2_4:59565186-59565205 | None:intergenic | 25.0% |
| !! | GCTTAATTTAAAATTAGAGG+GGG | - | chr2_4:59565216-59565235 | None:intergenic | 25.0% |
| !! | GGTGCTTAATTTAAAATTAG+AGG | - | chr2_4:59565219-59565238 | None:intergenic | 25.0% |
| ! | ATTAACAACAACTAACCATA+AGG | - | chr2_4:59565240-59565259 | None:intergenic | 25.0% |
| !!! | CAAATGGTGTTTTTATGTTT+TGG | + | chr2_4:59565269-59565288 | Msa0338880:three_prime_UTR | 25.0% |
| !!! | TCTTTGTTGATTTGATGAAA+AGG | - | chr2_4:59565335-59565354 | None:intergenic | 25.0% |
| !! | AATAATTCTAAAACAGCGGA+GGG | - | chr2_4:59560222-59560241 | None:intergenic | 30.0% |
| ACCCTAAATCTTAAAGATAC+GGG | - | chr2_4:59560537-59560556 | None:intergenic | 30.0% | |
| ! | ACCGGTTTAAAATTACAAAC+CGG | - | chr2_4:59560656-59560675 | None:intergenic | 30.0% |
| ACTGAATTGTATTAACGGTT+CGG | - | chr2_4:59560747-59560766 | None:intergenic | 30.0% | |
| ATCAACGCAAACAATGAAAT+GGG | + | chr2_4:59560806-59560825 | Msa0338880:intron | 30.0% | |
| !! | GAAGATTTTTGTTATGGCAA+CGG | + | chr2_4:59561007-59561026 | Msa0338880:exon | 30.0% |
| TCTTTGTAAAGCCTGTAATA+AGG | - | chr2_4:59561053-59561072 | None:intergenic | 30.0% | |
| ! | TGACACTTGAATAGACATTT+TGG | + | chr2_4:59561274-59561293 | Msa0338880:intron | 30.0% |
| !! | TTGAATAGACATTTTGGAAG+AGG | + | chr2_4:59561280-59561299 | Msa0338880:intron | 30.0% |
| ! | GAAGCAAATAAAAGCTCTTT+TGG | - | chr2_4:59561441-59561460 | None:intergenic | 30.0% |
| CACAAACACTTAGAAAGATA+AGG | - | chr2_4:59561531-59561550 | None:intergenic | 30.0% | |
| TATCTTTCTAAGTGTTTGTG+TGG | + | chr2_4:59561531-59561550 | Msa0338880:intron | 30.0% | |
| AGCTTATGAAAACAGCTTAT+AGG | + | chr2_4:59561622-59561641 | Msa0338880:intron | 30.0% | |
| !! | TTAAGTGTTTCTAGGGTAAA+GGG | - | chr2_4:59561713-59561732 | None:intergenic | 30.0% |
| !! | ATTAAGTGTTTCTAGGGTAA+AGG | - | chr2_4:59561714-59561733 | None:intergenic | 30.0% |
| !! | AAAAATGGAAAAGTACCAAC+AGG | + | chr2_4:59562010-59562029 | Msa0338880:intron | 30.0% |
| CGGTAATATCAAATGAGTAT+TGG | - | chr2_4:59562045-59562064 | None:intergenic | 30.0% | |
| !! | AATTGATTGTAGGGCATTTT+AGG | + | chr2_4:59562436-59562455 | Msa0338880:intron | 30.0% |
| ! | ACAGCAAAATAATCCAGTTT+TGG | - | chr2_4:59562516-59562535 | None:intergenic | 30.0% |
| TAAGATAGCCTACCAATATT+AGG | - | chr2_4:59562814-59562833 | None:intergenic | 30.0% | |
| ATGCTCTGTTAAATTTGAAG+AGG | + | chr2_4:59562844-59562863 | Msa0338880:intron | 30.0% | |
| TGTTAAATTTGAAGAGGTAG+AGG | + | chr2_4:59562850-59562869 | Msa0338880:intron | 30.0% | |
| ! | TTTTATGATGGTTTCTCGAA+TGG | - | chr2_4:59562890-59562909 | None:intergenic | 30.0% |
| ! | GACCTCTAAATCTTTTATGA+TGG | - | chr2_4:59562902-59562921 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr2_4:59562941-59562960 | Msa0338880:intron | 30.0% |
| TGTTGTTGCATAGTGAAATT+TGG | + | chr2_4:59563217-59563236 | Msa0338880:intron | 30.0% | |
| TGTGAAACAAAAACCAAAAG+AGG | - | chr2_4:59563318-59563337 | None:intergenic | 30.0% | |
| ! | AGAATTGCAACTACACATTT+TGG | + | chr2_4:59563634-59563653 | Msa0338880:CDS | 30.0% |
| ! | GTGATGCAAATTTTTGAACA+CGG | - | chr2_4:59563723-59563742 | None:intergenic | 30.0% |
| AGAACCTTCTACAAATTTGT+TGG | + | chr2_4:59564007-59564026 | Msa0338880:intron | 30.0% | |
| CATACCAACAAATTTGTAGA+AGG | - | chr2_4:59564014-59564033 | None:intergenic | 30.0% | |
| CAAAAGAATGAACTAACTTG+TGG | - | chr2_4:59564070-59564089 | None:intergenic | 30.0% | |
| TCTCCCAAAATAGAAATACA+AGG | + | chr2_4:59564185-59564204 | Msa0338880:intron | 30.0% | |
| TGCAAAACCTGAAGAATTTA+AGG | + | chr2_4:59564466-59564485 | Msa0338880:intron | 30.0% | |
| ! | CACTTTTCCATTTTAAACTG+TGG | + | chr2_4:59564621-59564640 | Msa0338880:intron | 30.0% |
| ! | TTTCCATTTTAAACTGTGGA+TGG | + | chr2_4:59564625-59564644 | Msa0338880:intron | 30.0% |
| TTAGAAAAAGTTTGGCAACA+GGG | - | chr2_4:59564716-59564735 | None:intergenic | 30.0% | |
| ATTAGAAAAAGTTTGGCAAC+AGG | - | chr2_4:59564717-59564736 | None:intergenic | 30.0% | |
| !! | TGTTGCCAAACTTTTTCTAA+TGG | + | chr2_4:59564716-59564735 | Msa0338880:intron | 30.0% |
| AAAATGTACAAAGATACACC+AGG | - | chr2_4:59564786-59564805 | None:intergenic | 30.0% | |
| AAATGACTGTAATAGTGCTT+TGG | + | chr2_4:59564824-59564843 | Msa0338880:intron | 30.0% | |
| ! | ATGGTTGCTCATATCAATTT+TGG | - | chr2_4:59564892-59564911 | None:intergenic | 30.0% |
| CTGAAAAGAAAAGAGAAAGT+AGG | - | chr2_4:59565034-59565053 | None:intergenic | 30.0% | |
| ! | CTACTTTCTCTTTTCTTTTC+AGG | + | chr2_4:59565032-59565051 | Msa0338880:intron | 30.0% |
| ATTTAGTGAAACCTTAAAGG+AGG | - | chr2_4:59565183-59565202 | None:intergenic | 30.0% | |
| !! | TGTTGATTTGATGAAAAGGA+CGG | - | chr2_4:59565331-59565350 | None:intergenic | 30.0% |
| GAATAAGATGACTCACTTGT+CGG | - | chr2_4:59560198-59560217 | None:intergenic | 35.0% | |
| !! | GAATAATTCTAAAACAGCGG+AGG | - | chr2_4:59560223-59560242 | None:intergenic | 35.0% |
| ATGATAGTTTACAAGGTGCA+AGG | - | chr2_4:59560311-59560330 | None:intergenic | 35.0% | |
| !!! | GATTTTGGTTCACGTTCTTA+TGG | + | chr2_4:59560340-59560359 | Msa0338880:intron | 35.0% |
| !! | ACCCCGTATCTTTAAGATTT+AGG | + | chr2_4:59560532-59560551 | Msa0338880:intron | 35.0% |
| CCCTAAATCTTAAAGATACG+GGG | - | chr2_4:59560536-59560555 | None:intergenic | 35.0% | |
| !! | CCCCGTATCTTTAAGATTTA+GGG | + | chr2_4:59560533-59560552 | Msa0338880:intron | 35.0% |
| TTGGTTTAAATGAACTGAGC+CGG | + | chr2_4:59560634-59560653 | Msa0338880:intron | 35.0% | |
| !!! | GCCGGTTTGTAATTTTAAAC+CGG | + | chr2_4:59560652-59560671 | Msa0338880:intron | 35.0% |
| !!! | AAACCGGTTTTGAACTGAAT+TGG | + | chr2_4:59560668-59560687 | Msa0338880:intron | 35.0% |
| GTTCCAATTCAGTTCAAAAC+CGG | - | chr2_4:59560674-59560693 | None:intergenic | 35.0% | |
| CATCAACGCAAACAATGAAA+TGG | + | chr2_4:59560805-59560824 | Msa0338880:intron | 35.0% | |
| CAACTTAACCATAACAGGAA+CGG | - | chr2_4:59560860-59560879 | None:intergenic | 35.0% | |
| AGACACAACTTAACCATAAC+AGG | - | chr2_4:59560865-59560884 | None:intergenic | 35.0% | |
| GATGCATCTATGATCTTTGA+AGG | + | chr2_4:59560974-59560993 | Msa0338880:five_prime_UTR | 35.0% | |
| TTGTAAAGCCTGTAATAAGG+TGG | - | chr2_4:59561050-59561069 | None:intergenic | 35.0% | |
| ATATAAGTTCCTTCAATCGG+TGG | - | chr2_4:59561113-59561132 | None:intergenic | 35.0% | |
| GGAACTTATATTTGTTTCGG+AGG | + | chr2_4:59561122-59561141 | Msa0338880:CDS | 35.0% | |
| !!! | TTTTTACCTGGTTTTAGCTC+TGG | + | chr2_4:59561365-59561384 | Msa0338880:intron | 35.0% |
| AAGCCCAAAGACTTCAAAAA+TGG | + | chr2_4:59561995-59562014 | Msa0338880:intron | 35.0% | |
| TATTGGTATCAGATACCTGT+TGG | - | chr2_4:59562028-59562047 | None:intergenic | 35.0% | |
| CTCATTTGATATTACCGGAT+AGG | + | chr2_4:59562048-59562067 | Msa0338880:intron | 35.0% | |
| !!! | TGGAATACTTTTGGGACTTT+GGG | - | chr2_4:59562076-59562095 | None:intergenic | 35.0% |
| !!! | ATGGAATACTTTTGGGACTT+TGG | - | chr2_4:59562077-59562096 | None:intergenic | 35.0% |
| ! | TAGTTCATCTTCGACAGTTT+TGG | + | chr2_4:59562126-59562145 | Msa0338880:intron | 35.0% |
| CACTATATATACACACACTC+TGG | + | chr2_4:59562265-59562284 | Msa0338880:intron | 35.0% | |
| !! | ATATTTTGGACCACCAAAAC+TGG | + | chr2_4:59562500-59562519 | Msa0338880:intron | 35.0% |
| !! | GCAAAATAATCCAGTTTTGG+TGG | - | chr2_4:59562513-59562532 | None:intergenic | 35.0% |
| ! | ATTTTATGCAGAAGCCTCTT+TGG | + | chr2_4:59562675-59562694 | Msa0338880:intron | 35.0% |
| !! | TAGGTCCTTTAGAATAGAGT+TGG | - | chr2_4:59562795-59562814 | None:intergenic | 35.0% |
| CTAAAGGACCTAATATTGGT+AGG | + | chr2_4:59562803-59562822 | Msa0338880:intron | 35.0% | |
| ! | GTTTCTCGAATGGTTTTCTT+AGG | - | chr2_4:59562880-59562899 | None:intergenic | 35.0% |
| AGATTTAGAGGTCAATGAGT+TGG | + | chr2_4:59562909-59562928 | Msa0338880:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr2_4:59562921-59562940 | Msa0338880:intron | 35.0% |
| AGTGTTTGACAACACTACAA+AGG | - | chr2_4:59563108-59563127 | None:intergenic | 35.0% | |
| TTTGTAGTGTTGTCAAACAC+TGG | + | chr2_4:59563107-59563126 | Msa0338880:intron | 35.0% | |
| ! | ATTTGGACAAACCGCTATTT+TGG | + | chr2_4:59563234-59563253 | Msa0338880:intron | 35.0% |
| !! | TTTGGACAAACCGCTATTTT+GGG | + | chr2_4:59563235-59563254 | Msa0338880:intron | 35.0% |
| CCAGCCCATGTATATATAAA+CGG | - | chr2_4:59563379-59563398 | None:intergenic | 35.0% | |
| ! | TTTTCTTCAGACAAAAAGGC+TGG | - | chr2_4:59563415-59563434 | None:intergenic | 35.0% |
| ACTACACACAGTCACATATT+AGG | - | chr2_4:59563449-59563468 | None:intergenic | 35.0% | |
| TTCATAGGGAAATGCTGAAT+TGG | + | chr2_4:59563506-59563525 | Msa0338880:intron | 35.0% | |
| AGATCATTGTATACCTGATG+AGG | - | chr2_4:59563764-59563783 | None:intergenic | 35.0% | |
| ! | AGCAACTCTGATTCACATTT+TGG | + | chr2_4:59563886-59563905 | Msa0338880:CDS | 35.0% |
| TTGTAAGTTGTGACCTTCAT+GGG | + | chr2_4:59564035-59564054 | Msa0338880:intron | 35.0% | |
| !!! | AGACTCTAACTTTTTCACAC+TGG | + | chr2_4:59564113-59564132 | Msa0338880:intron | 35.0% |
| !!! | GACTCTAACTTTTTCACACT+GGG | + | chr2_4:59564114-59564133 | Msa0338880:intron | 35.0% |
| TGACTTCCCTGAATAAGTTA+AGG | - | chr2_4:59564155-59564174 | None:intergenic | 35.0% | |
| TCAGTTAAGGTTGTTAGTGT+TGG | - | chr2_4:59564222-59564241 | None:intergenic | 35.0% | |
| TGTATCTGGTGAATCAGTTA+AGG | - | chr2_4:59564235-59564254 | None:intergenic | 35.0% | |
| TGCTAGTTAGTTGTTGTATC+TGG | - | chr2_4:59564249-59564268 | None:intergenic | 35.0% | |
| ! | TCTACATGTTTTCCTACTCT+TGG | + | chr2_4:59564291-59564310 | Msa0338880:intron | 35.0% |
| CATGAAAATGTTCCAAGAGT+AGG | - | chr2_4:59564306-59564325 | None:intergenic | 35.0% | |
| ! | ACTCTTGGAACATTTTCATG+AGG | + | chr2_4:59564306-59564325 | Msa0338880:intron | 35.0% |
| ! | TTATGTTCTAGCTATTAGGC+AGG | - | chr2_4:59564343-59564362 | None:intergenic | 35.0% |
| ! | AACCTGAAGAATTTAAGGCT+TGG | + | chr2_4:59564471-59564490 | Msa0338880:intron | 35.0% |
| AAAAACTAGTAAGCAGCCAT+GGG | - | chr2_4:59564519-59564538 | None:intergenic | 35.0% | |
| AAAAAACTAGTAAGCAGCCA+TGG | - | chr2_4:59564520-59564539 | None:intergenic | 35.0% | |
| CTTCCATCCACAGTTTAAAA+TGG | - | chr2_4:59564631-59564650 | None:intergenic | 35.0% | |
| AGGTATGATGCTATGATTTC+TGG | - | chr2_4:59564766-59564785 | None:intergenic | 35.0% | |
| AGAAATCATAGCATCATACC+TGG | + | chr2_4:59564765-59564784 | Msa0338880:intron | 35.0% | |
| !! | TAGTGCTTTGGAAACTTGAT+TGG | + | chr2_4:59564836-59564855 | Msa0338880:intron | 35.0% |
| !! | TACAAGAGAAGCATTGTCTT+TGG | - | chr2_4:59564945-59564964 | None:intergenic | 35.0% |
| !! | CTTTCTCTTTTCTTTTCAGG+AGG | + | chr2_4:59565035-59565054 | Msa0338880:intron | 35.0% |
| AAGAATCCTTAACGAGTCAT+TGG | + | chr2_4:59565072-59565091 | Msa0338880:CDS | 35.0% | |
| TTCTCTTCGTCTCTCTTTCT+CGG | - | chr2_4:59560101-59560120 | None:intergenic | 40.0% | |
| AGAAAGAGAGACGAAGAGAA+AGG | + | chr2_4:59560101-59560120 | Msa0338880:five_prime_UTR | 40.0% | |
| GAAAGAGAGACGAAGAGAAA+GGG | + | chr2_4:59560102-59560121 | Msa0338880:five_prime_UTR | 40.0% | |
| !! | CACGTTTTAGATTGGGTTGT+AGG | - | chr2_4:59560472-59560491 | None:intergenic | 40.0% |
| !! | TTTGCGTTGATGATGAGCTA+GGG | - | chr2_4:59560797-59560816 | None:intergenic | 40.0% |
| TGCAATTTCCGTTCCTGTTA+TGG | + | chr2_4:59560849-59560868 | Msa0338880:intron | 40.0% | |
| ATCTCCATGCATTCTTCATG+CGG | + | chr2_4:59560913-59560932 | Msa0338880:intron | 40.0% | |
| TAAAGCCTGTAATAAGGTGG+TGG | - | chr2_4:59561047-59561066 | None:intergenic | 40.0% | |
| GCTTTACAAAGATTACGTCC+AGG | + | chr2_4:59561061-59561080 | Msa0338880:CDS | 40.0% | |
| ! | CAAGTGTCACTGTAATAGCA+GGG | - | chr2_4:59561263-59561282 | None:intergenic | 40.0% |
| ! | TCAAGTGTCACTGTAATAGC+AGG | - | chr2_4:59561264-59561283 | None:intergenic | 40.0% |
| ! | TGTGCGTAATTCTGAAAGCT+TGG | + | chr2_4:59561390-59561409 | Msa0338880:intron | 40.0% |
| CATGACAACTTTGCTGCATT+TGG | + | chr2_4:59561479-59561498 | Msa0338880:intron | 40.0% | |
| TGGCAGCAACTCCAATTATT+TGG | + | chr2_4:59561853-59561872 | Msa0338880:intron | 40.0% | |
| !! | TTCATCTTCGACAGTTTTGG+TGG | + | chr2_4:59562129-59562148 | Msa0338880:intron | 40.0% |
| ! | TTTGGTGGAGACAAGGATTT+TGG | + | chr2_4:59562144-59562163 | Msa0338880:intron | 40.0% |
| TATCAGGCTGTGTTCAGTTT+AGG | + | chr2_4:59562546-59562565 | Msa0338880:intron | 40.0% | |
| ATCAGGCTGTGTTCAGTTTA+GGG | + | chr2_4:59562547-59562566 | Msa0338880:intron | 40.0% | |
| TGAGTTCAGTCTTGCAAAAC+AGG | + | chr2_4:59562598-59562617 | Msa0338880:intron | 40.0% | |
| GAGTTCAGTCTTGCAAAACA+GGG | + | chr2_4:59562599-59562618 | Msa0338880:intron | 40.0% | |
| ACGATATGATCACACCAAAG+AGG | - | chr2_4:59562692-59562711 | None:intergenic | 40.0% | |
| TAGTGATGTTCTACCAAGCT+TGG | + | chr2_4:59562753-59562772 | Msa0338880:CDS | 40.0% | |
| GTACGCCAACTCTATTCTAA+AGG | + | chr2_4:59562787-59562806 | Msa0338880:CDS | 40.0% | |
| ! | AAGCCTTATCCCATTAAGTG+GGG | - | chr2_4:59562990-59563009 | None:intergenic | 40.0% |
| ! | CAAGCCTTATCCCATTAAGT+GGG | - | chr2_4:59562991-59563010 | None:intergenic | 40.0% |
| ! | TCAAGCCTTATCCCATTAAG+TGG | - | chr2_4:59562992-59563011 | None:intergenic | 40.0% |
| AGTGACTGTTACAGATAGTG+TGG | + | chr2_4:59563051-59563070 | Msa0338880:intron | 40.0% | |
| GTGACTGTTACAGATAGTGT+GGG | + | chr2_4:59563052-59563071 | Msa0338880:intron | 40.0% | |
| CTGTCAAATAGCTGCTATAG+CGG | + | chr2_4:59563186-59563205 | Msa0338880:intron | 40.0% | |
| TCCAGAACATCCCAAAATAG+CGG | - | chr2_4:59563248-59563267 | None:intergenic | 40.0% | |
| CCGTTTATATATACATGGGC+TGG | + | chr2_4:59563376-59563395 | Msa0338880:intron | 40.0% | |
| TGTGTGTAGTCTAGACTTGT+GGG | + | chr2_4:59563459-59563478 | Msa0338880:intron | 40.0% | |
| TGGTCACAAAAGCCAATGTT+TGG | + | chr2_4:59563526-59563545 | Msa0338880:intron | 40.0% | |
| CTAGTAGAGACACCAAACAT+TGG | - | chr2_4:59563541-59563560 | None:intergenic | 40.0% | |
| TAGATTTCAAGAAGGAGCTG+AGG | + | chr2_4:59563600-59563619 | Msa0338880:intron | 40.0% | |
| AGAGACCATCACAATATGCA+AGG | + | chr2_4:59563678-59563697 | Msa0338880:CDS | 40.0% | |
| ACTCTCCTTGCATATTGTGA+TGG | - | chr2_4:59563686-59563705 | None:intergenic | 40.0% | |
| !! | ACCAGAAGCATCCAAATCAA+AGG | - | chr2_4:59563812-59563831 | None:intergenic | 40.0% |
| AAGCTGTGGAGGACATAAAT+AGG | + | chr2_4:59563933-59563952 | Msa0338880:CDS | 40.0% | |
| CTTGTAAGTTGTGACCTTCA+TGG | + | chr2_4:59564034-59564053 | Msa0338880:intron | 40.0% | |
| GTGGATTTAGTAACCCATGA+AGG | - | chr2_4:59564051-59564070 | None:intergenic | 40.0% | |
| GACCAAGCCTTAAATTCTTC+AGG | - | chr2_4:59564476-59564495 | None:intergenic | 40.0% | |
| ATGGGTGTATGAACCTATGA+GGG | - | chr2_4:59564501-59564520 | None:intergenic | 40.0% | |
| AAAAGTTTGGCAACAGGGTA+TGG | - | chr2_4:59564711-59564730 | None:intergenic | 40.0% | |
| AGACAATCATGGCAACCTTA+AGG | + | chr2_4:59565143-59565162 | Msa0338880:three_prime_UTR | 40.0% | |
| GACAATCATGGCAACCTTAA+GGG | + | chr2_4:59565144-59565163 | Msa0338880:three_prime_UTR | 40.0% | |
| GTTAGTGCAACTTTCCCTTA+AGG | - | chr2_4:59565161-59565180 | None:intergenic | 40.0% | |
| AGTTGCACTAACCTCCTTTA+AGG | + | chr2_4:59565169-59565188 | Msa0338880:three_prime_UTR | 40.0% | |
| !! | TTGCGTTGATGATGAGCTAG+GGG | - | chr2_4:59560796-59560815 | None:intergenic | 45.0% |
| !! | GTTTGCGTTGATGATGAGCT+AGG | - | chr2_4:59560798-59560817 | None:intergenic | 45.0% |
| AATGCCGCATGAAGAATGCA+TGG | - | chr2_4:59560920-59560939 | None:intergenic | 45.0% | |
| !! | TGTAATAAGGTGGTGGTGGT+GGG | - | chr2_4:59561040-59561059 | None:intergenic | 45.0% |
| TAAGTTCCTTCAATCGGTGG+TGG | - | chr2_4:59561110-59561129 | None:intergenic | 45.0% | |
| ! | TCCCATCATGGCAGGATTTT+GGG | + | chr2_4:59561773-59561792 | Msa0338880:intron | 45.0% |
| TCCCAAAATCCTGCCATGAT+GGG | - | chr2_4:59561777-59561796 | None:intergenic | 45.0% | |
| TTCCCAAAATCCTGCCATGA+TGG | - | chr2_4:59561778-59561797 | None:intergenic | 45.0% | |
| !! | TCATGGCAGGATTTTGGGAA+TGG | + | chr2_4:59561778-59561797 | Msa0338880:intron | 45.0% |
| TGGGAATGGTTTGACTCATG+AGG | + | chr2_4:59561792-59561811 | Msa0338880:intron | 45.0% | |
| ACTCAAATGAGTGACCTCCT+AGG | + | chr2_4:59561826-59561845 | Msa0338880:intron | 45.0% | |
| TCAACCTAGCTCAAGGTATG+TGG | - | chr2_4:59562581-59562600 | None:intergenic | 45.0% | |
| ACTGAACTCAACCTAGCTCA+AGG | - | chr2_4:59562588-59562607 | None:intergenic | 45.0% | |
| CTACCAAGCTTGGAAGAACA+AGG | + | chr2_4:59562763-59562782 | Msa0338880:CDS | 45.0% | |
| ACTCCTTGTTCTTCCAAGCT+TGG | - | chr2_4:59562769-59562788 | None:intergenic | 45.0% | |
| CTTATCCCATTAAGTGGGGT+CGG | - | chr2_4:59562986-59563005 | None:intergenic | 45.0% | |
| !! | ACACTGGTGCTATAGCATTG+CGG | + | chr2_4:59563123-59563142 | Msa0338880:intron | 45.0% |
| !!! | ACCGCTATTTTGGGATGTTC+TGG | + | chr2_4:59563244-59563263 | Msa0338880:intron | 45.0% |
| GACAAAAAGGCTGGAGCTAA+AGG | - | chr2_4:59563406-59563425 | None:intergenic | 45.0% | |
| CTGTGTGTAGTCTAGACTTG+TGG | + | chr2_4:59563458-59563477 | Msa0338880:intron | 45.0% | |
| ! | ACTTGTGGGCCTGATCTTTT+AGG | + | chr2_4:59563473-59563492 | Msa0338880:intron | 45.0% |
| AAGGAGCTGAGGTCACTTAA+TGG | + | chr2_4:59563611-59563630 | Msa0338880:CDS | 45.0% | |
| GAGGACGCAGAGAATTCAAA+AGG | - | chr2_4:59563745-59563764 | None:intergenic | 45.0% | |
| !! | GCCTTTGATTTGGATGCTTC+TGG | + | chr2_4:59563808-59563827 | Msa0338880:intron | 45.0% |
| AGAACGTCGTAAACAAGCTG+TGG | + | chr2_4:59563919-59563938 | Msa0338880:CDS | 45.0% | |
| CATGGGTGTATGAACCTATG+AGG | - | chr2_4:59564502-59564521 | None:intergenic | 45.0% | |
| CTCATAGGTTCATACACCCA+TGG | + | chr2_4:59564500-59564519 | Msa0338880:intron | 45.0% | |
| TGGCAAAACTGGGCAAAGAA+GGG | - | chr2_4:59564919-59564938 | None:intergenic | 45.0% | |
| ATGGCAAAACTGGGCAAAGA+AGG | - | chr2_4:59564920-59564939 | None:intergenic | 45.0% | |
| ! | TTCTTTGCCCAGTTTTGCCA+TGG | + | chr2_4:59564919-59564938 | Msa0338880:intron | 45.0% |
| TCTTTGGCCATGGCAAAACT+GGG | - | chr2_4:59564929-59564948 | None:intergenic | 45.0% | |
| !! | AGAAGCATTGTCTTTGGCCA+TGG | - | chr2_4:59564939-59564958 | None:intergenic | 45.0% |
| GTGTTGCCAATGACTCGTTA+AGG | - | chr2_4:59565081-59565100 | None:intergenic | 45.0% | |
| GAGTCATTGGCAACACTTGA+TGG | + | chr2_4:59565085-59565104 | Msa0338880:CDS | 45.0% | |
| !!! | ATTTTTTTTTTTAATTTCAT+TGG | + | chr2_4:59563974-59563993 | Msa0338880:intron | 5.0% |
| !! | TGATGAGCTAGGGGTGTTCA+TGG | - | chr2_4:59560787-59560806 | None:intergenic | 50.0% |
| !! | CTGTAATAAGGTGGTGGTGG+TGG | - | chr2_4:59561041-59561060 | None:intergenic | 50.0% |
| CACCACCACCACCTTATTAC+AGG | + | chr2_4:59561039-59561058 | Msa0338880:CDS | 50.0% | |
| ! | AGCCTGTAATAAGGTGGTGG+TGG | - | chr2_4:59561044-59561063 | None:intergenic | 50.0% |
| CACATGCCAGAGCTAAAACC+AGG | - | chr2_4:59561374-59561393 | None:intergenic | 50.0% | |
| TCTCTAGCACTAAGCCCCTT+CGG | - | chr2_4:59561749-59561768 | None:intergenic | 50.0% | |
| GCTAGAGAAAGCTCCCATCA+TGG | + | chr2_4:59561761-59561780 | Msa0338880:intron | 50.0% | |
| ! | CTCCCATCATGGCAGGATTT+TGG | + | chr2_4:59561772-59561791 | Msa0338880:intron | 50.0% |
| TGAGTGACCTCCTAGGCATA+TGG | + | chr2_4:59561833-59561852 | Msa0338880:intron | 50.0% | |
| TGGGACTTTGGGTACCTATC+CGG | - | chr2_4:59562065-59562084 | None:intergenic | 50.0% | |
| !! | CGACAGTTTTGGTGGAGACA+AGG | + | chr2_4:59562137-59562156 | Msa0338880:intron | 50.0% |
| CCTAGCTCAAGGTATGTGGT+TGG | - | chr2_4:59562577-59562596 | None:intergenic | 50.0% | |
| CCAACCACATACCTTGAGCT+AGG | + | chr2_4:59562574-59562593 | Msa0338880:intron | 50.0% | |
| ATTAAGTGGGGTCGGCTACA+TGG | - | chr2_4:59562978-59562997 | None:intergenic | 50.0% | |
| ATGTAGCCGACCCCACTTAA+TGG | + | chr2_4:59562977-59562996 | Msa0338880:intron | 50.0% | |
| TGTAGCCGACCCCACTTAAT+GGG | + | chr2_4:59562978-59562997 | Msa0338880:intron | 50.0% | |
| CGACCCCACTTAATGGGATA+AGG | + | chr2_4:59562984-59563003 | Msa0338880:intron | 50.0% | |
| GAATTCTCTGCGTCCTCATC+AGG | + | chr2_4:59563748-59563767 | Msa0338880:CDS | 50.0% | |
| ACGTCGTAAACAAGCTGTGG+AGG | + | chr2_4:59563922-59563941 | Msa0338880:CDS | 50.0% | |
| GGTGTATGAACCTATGAGGG+AGG | - | chr2_4:59564498-59564517 | None:intergenic | 50.0% | |
| CTGGGCAAAGAAGGGAGAAA+TGG | - | chr2_4:59564911-59564930 | None:intergenic | 50.0% | |
| GTCTTTGGCCATGGCAAAAC+TGG | - | chr2_4:59564930-59564949 | None:intergenic | 50.0% | |
| GTGGTGAGATCGAGAGAGCT+GGG | - | chr2_4:59560137-59560156 | None:intergenic | 55.0% | |
| CAAGGTTCCGGCTAGTGTGA+AGG | - | chr2_4:59560162-59560181 | None:intergenic | 55.0% | |
| ! | GTTCCTTCAATCGGTGGTGG+AGG | - | chr2_4:59561107-59561126 | None:intergenic | 55.0% |
| TCGGAGGCAGTTACACTGTG+AGG | + | chr2_4:59561138-59561157 | Msa0338880:intron | 55.0% | |
| GAGAAAGCTCCCATCATGGC+AGG | + | chr2_4:59561765-59561784 | Msa0338880:intron | 55.0% | |
| GTTGCTGCCATATGCCTAGG+AGG | - | chr2_4:59561843-59561862 | None:intergenic | 55.0% | |
| GGAGTTGCTGCCATATGCCT+AGG | - | chr2_4:59561846-59561865 | None:intergenic | 55.0% | |
| ! | AAGGCTTGGTCCTCCCTCAT+AGG | + | chr2_4:59564485-59564504 | Msa0338880:intron | 55.0% |
| GGTGGTGAGATCGAGAGAGC+TGG | - | chr2_4:59560138-59560157 | None:intergenic | 60.0% | |
| ACCACCGCCTTCACACTAGC+CGG | + | chr2_4:59560152-59560171 | Msa0338880:five_prime_UTR | 60.0% | |
| GGTTCCGGCTAGTGTGAAGG+CGG | - | chr2_4:59560159-59560178 | None:intergenic | 60.0% | |
| CACACTAGCCGGAACCTTGC+CGG | + | chr2_4:59560163-59560182 | Msa0338880:five_prime_UTR | 60.0% | |
| CACTTGTCGGAGTGATGCGC+CGG | - | chr2_4:59560185-59560204 | None:intergenic | 60.0% | |
| !! | GAGGCTCTGGAGCAGACTCA+GGG | - | chr2_4:59561088-59561107 | None:intergenic | 60.0% |
| !! | TCAATCGGTGGTGGAGGCTC+TGG | - | chr2_4:59561101-59561120 | None:intergenic | 60.0% |
| ! | GAGCCTCCACCACCGATTGA+AGG | + | chr2_4:59561101-59561120 | Msa0338880:CDS | 60.0% |
| TCCGGCTAGTGTGAAGGCGG+TGG | - | chr2_4:59560156-59560175 | None:intergenic | 65.0% | |
| ! | GTGATGCGCCGGCAAGGTTC+CGG | - | chr2_4:59560174-59560193 | None:intergenic | 65.0% |
| CTGGAGCAGACTCAGGGTCC+TGG | - | chr2_4:59561082-59561101 | None:intergenic | 65.0% | |
| !! | GGAGGCTCTGGAGCAGACTC+AGG | - | chr2_4:59561089-59561108 | None:intergenic | 65.0% |
| ! | GTCGGAGTGATGCGCCGGCA+AGG | - | chr2_4:59560180-59560199 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 59560064 | 59565373 | 59560064 | ID=Msa0338880;Name=Msa0338880 |
| chr2_4 | mRNA | 59560064 | 59565373 | 59560064 | ID=Msa0338880-mRNA-1;Parent=Msa0338880;Name=Msa0338880-mRNA-1;_AED=0.10;_eAED=0.10;_QI=197|1|1|1|0.8|0.66|6|259|168 |
| chr2_4 | exon | 59560064 | 59560201 | 59560064 | ID=Msa0338880-mRNA-1:exon:18454;Parent=Msa0338880-mRNA-1 |
| chr2_4 | exon | 59560961 | 59561154 | 59560961 | ID=Msa0338880-mRNA-1:exon:18455;Parent=Msa0338880-mRNA-1 |
| chr2_4 | exon | 59562751 | 59562820 | 59562751 | ID=Msa0338880-mRNA-1:exon:18456;Parent=Msa0338880-mRNA-1 |
| chr2_4 | exon | 59563603 | 59563769 | 59563603 | ID=Msa0338880-mRNA-1:exon:18457;Parent=Msa0338880-mRNA-1 |
| chr2_4 | exon | 59563881 | 59563954 | 59563881 | ID=Msa0338880-mRNA-1:exon:18458;Parent=Msa0338880-mRNA-1 |
| chr2_4 | exon | 59565054 | 59565373 | 59565054 | ID=Msa0338880-mRNA-1:exon:18459;Parent=Msa0338880-mRNA-1 |
| chr2_4 | five_prime_UTR | 59560064 | 59560201 | 59560064 | ID=Msa0338880-mRNA-1:five_prime_utr;Parent=Msa0338880-mRNA-1 |
| chr2_4 | five_prime_UTR | 59560961 | 59561019 | 59560961 | ID=Msa0338880-mRNA-1:five_prime_utr;Parent=Msa0338880-mRNA-1 |
| chr2_4 | CDS | 59561020 | 59561154 | 59561020 | ID=Msa0338880-mRNA-1:cds;Parent=Msa0338880-mRNA-1 |
| chr2_4 | CDS | 59562751 | 59562820 | 59562751 | ID=Msa0338880-mRNA-1:cds;Parent=Msa0338880-mRNA-1 |
| chr2_4 | CDS | 59563603 | 59563769 | 59563603 | ID=Msa0338880-mRNA-1:cds;Parent=Msa0338880-mRNA-1 |
| chr2_4 | CDS | 59563881 | 59563954 | 59563881 | ID=Msa0338880-mRNA-1:cds;Parent=Msa0338880-mRNA-1 |
| chr2_4 | CDS | 59565054 | 59565114 | 59565054 | ID=Msa0338880-mRNA-1:cds;Parent=Msa0338880-mRNA-1 |
| chr2_4 | three_prime_UTR | 59565115 | 59565373 | 59565115 | ID=Msa0338880-mRNA-1:three_prime_utr;Parent=Msa0338880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
