AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0339610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339610 MtrunA17_Chr2g0328231 76.147 109 10 2 1 93 1 109 2.29e-47 157
Msa0339610 MtrunA17_Chr2g0328241 64.286 168 37 1 2 169 305 449 8.45e-46 159
Msa0339610 MtrunA17_Chr2g0328251 58.152 184 38 2 2 169 305 465 1.38e-45 158
Msa0339610 MtrunA17_Chr4g0071141 58.571 140 35 1 1 140 1 117 1.96e-43 140
Msa0339610 MtrunA17_Chr2g0327251 67.416 89 29 0 2 90 238 326 3.42e-29 112
Msa0339610 MtrunA17_Chr4g0024031 49.138 116 31 1 2 89 295 410 1.20e-21 90.9
Msa0339610 MtrunA17_Chr3g0111661 34.568 162 88 2 8 168 282 426 2.01e-14 70.1
Msa0339610 MtrunA17_Chr5g0435301 32.911 158 90 2 11 168 765 906 3.03e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339610 AT1G13790.2 38.889 162 76 1 8 169 381 519 1.73e-20 88.2
Msa0339610 AT1G13790.1 38.889 162 76 1 8 169 381 519 1.73e-20 88.2
Msa0339610 AT3G12550.3 31.288 163 90 2 9 168 281 424 1.67e-11 62.0
Msa0339610 AT3G12550.5 31.288 163 90 2 9 168 281 424 1.91e-11 62.0
Msa0339610 AT3G12550.4 31.288 163 90 2 9 168 281 424 2.01e-11 62.0
Msa0339610 AT3G12550.2 31.288 163 90 2 9 168 281 424 2.01e-11 62.0
Msa0339610 AT3G12550.1 31.288 163 90 2 9 168 281 424 2.01e-11 62.0
Msa0339610 AT1G80790.1 33.125 160 87 3 11 168 278 419 5.78e-11 60.5
Msa0339610 AT1G80790.2 33.125 160 87 3 11 168 278 419 5.78e-11 60.5
Msa0339610 AT1G80790.3 33.125 160 87 3 11 168 278 419 8.02e-11 60.1

Find 82 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGCTTGAACAGTTTATTA+AGG 0.233568 2_4:+60857147 Msa0339610:CDS
ACGAGGCTAATTTGTTTCTA+AGG 0.244784 2_4:+60857101 Msa0339610:CDS
ATGGCTCGAGGAGCCTTCTT+TGG 0.276297 2_4:-60858544 None:intergenic
GCAGGTTGAACGCGATTATC+TGG 0.288294 2_4:+60857406 Msa0339610:CDS
AAGTTTATTGAGGCTTCATT+TGG 0.356103 2_4:+60859244 Msa0339610:three_prime_UTR
TCCTGAAAATTCCAGAGTTC+CGG 0.361999 2_4:-60859150 None:intergenic
AACGGCAAGAGGAGCTTTCC+AGG 0.367759 2_4:+60858238 Msa0339610:CDS
AAAGCTGAAGACCATGGAAT+TGG 0.378143 2_4:+60857057 None:intergenic
TGGCTCGAGGAGCCTTCTTT+GGG 0.396617 2_4:-60858543 None:intergenic
TTTCCTTGTTCGCAGTGGAT+TGG 0.397924 2_4:+60858517 Msa0339610:intron
CTCCAATGTGATTCATTACC+TGG 0.402190 2_4:-60858256 None:intergenic
TTCATCAGAAAACTTTCTCT+TGG 0.404556 2_4:-60858620 None:intergenic
ATGCTTGAACAGTTTATTAA+GGG 0.412863 2_4:+60857148 Msa0339610:CDS
AAATTCCAGAGTTCCGGTAT+TGG 0.414932 2_4:-60859144 None:intergenic
AGGAAGGAAGGCTTTGTTGA+AGG 0.423776 2_4:+60859173 Msa0339610:three_prime_UTR
AACTTTGAACGGATGCCAGC+TGG 0.431621 2_4:-60858740 None:intergenic
GGCGGTAAGAACATAGAATC+AGG 0.436061 2_4:+60859266 Msa0339610:three_prime_UTR
ATTCTAGCTCCAACAGACTT+TGG 0.439227 2_4:+60859324 Msa0339610:three_prime_UTR
TCAACTTATGTCACGTGAAA+AGG 0.439309 2_4:+60857484 Msa0339610:CDS
TAATAAATGGAAAGCAAGAA+AGG 0.448416 2_4:+60859215 Msa0339610:three_prime_UTR
TCCTGTTGTTTACAGAATGA+TGG 0.450507 2_4:+60857980 Msa0339610:CDS
AGAAGAGGAATTGGAGGTCG+TGG 0.450522 2_4:+60858337 Msa0339610:three_prime_UTR
GCCATCATTCTGTAAACAAC+AGG 0.450699 2_4:-60857981 None:intergenic
TGAAAAGCTGAAAAGTTTGA+AGG 0.453713 2_4:+60859041 Msa0339610:three_prime_UTR
TTGCATCAAGTCCTCTCTCC+AGG 0.454987 2_4:-60858191 None:intergenic
AGGAAGGCTTTGTTGAAGGA+AGG 0.462438 2_4:+60859177 Msa0339610:three_prime_UTR
GAAGGATGAGGTCGGGGAAG+AGG 0.469590 2_4:+60859059 Msa0339610:three_prime_UTR
AGTTTATTGAGGCTTCATTT+GGG 0.471329 2_4:+60859245 Msa0339610:three_prime_UTR
AGCAATCAGAATGGAGCTGC+AGG 0.472823 2_4:+60858310 Msa0339610:three_prime_UTR
GAGCCATAATTTCTGTGAAA+AGG 0.480154 2_4:+60858560 Msa0339610:three_prime_UTR
TTTGTTTCTAAGGAAAGTGA+TGG 0.482581 2_4:+60857111 Msa0339610:CDS
AAAGTTTGAAGGATGAGGTC+GGG 0.485678 2_4:+60859052 Msa0339610:three_prime_UTR
GCATTTGGCTGAAGAGCATA+AGG 0.489190 2_4:+60858040 Msa0339610:CDS
AAGGGATAGAAAGTTTATTG+AGG 0.490453 2_4:+60859234 Msa0339610:three_prime_UTR
TGCAGTAGCTACGGCTCTGA+TGG 0.505411 2_4:+60859089 Msa0339610:three_prime_UTR
GGTATCCAATACCGGAACTC+TGG 0.505524 2_4:+60859139 Msa0339610:three_prime_UTR
CATAATTTCTGTGAAAAGGA+TGG 0.509342 2_4:+60858564 Msa0339610:three_prime_UTR
TGCAAAACAAGCATTGGAGT+TGG 0.517554 2_4:+60858209 Msa0339610:CDS
TTATCAGTCACAACTTTGAA+CGG 0.523508 2_4:-60858751 None:intergenic
AATAAATGGAAAGCAAGAAA+GGG 0.523906 2_4:+60859216 Msa0339610:three_prime_UTR
ACTTGATGCAAAACAAGCAT+TGG 0.532788 2_4:+60858203 Msa0339610:CDS
GCTGAAAAGTTTGAAGGATG+AGG 0.539604 2_4:+60859047 Msa0339610:three_prime_UTR
GGCGCATGATGCAGTAGCTA+CGG 0.542608 2_4:+60859080 Msa0339610:three_prime_UTR
AAGTTTGAAGGATGAGGTCG+GGG 0.545446 2_4:+60859053 Msa0339610:three_prime_UTR
TATTGTATGATCCAATTCCA+TGG 0.546849 2_4:-60857068 None:intergenic
TCAATCATATTGCCAATGGC+TGG 0.551744 2_4:+60859353 Msa0339610:three_prime_UTR
AGAAATCAGCAAGATGCAGC+AGG 0.552419 2_4:+60857388 Msa0339610:intron
CAATCGAGCGGCGCTCAAAG+TGG 0.555424 2_4:+60858698 Msa0339610:three_prime_UTR
TTCACAGAAATTATGGCTCG+AGG 0.555555 2_4:-60858556 None:intergenic
GTGGATTGGATGCCCAAAGA+AGG 0.556146 2_4:+60858531 Msa0339610:intron
CATTGGAGTTGGAAATTGAA+CGG 0.558255 2_4:+60858220 Msa0339610:CDS
AAAATTGGAAGCAATCAGAA+TGG 0.559788 2_4:+60858301 Msa0339610:three_prime_UTR
GCTTATCTATATATATATGA+AGG 0.559890 2_4:+60859288 Msa0339610:three_prime_UTR
CCGAGCTTCTAGTTGAAGCA+TGG 0.561581 2_4:-60857456 None:intergenic
AATCGAGCGGCGCTCAAAGT+GGG 0.563677 2_4:+60858699 Msa0339610:three_prime_UTR
TAGTGGTAGGTATCCAATAC+CGG 0.565890 2_4:+60859131 Msa0339610:three_prime_UTR
ATAATTTCTGTGAAAAGGAT+GGG 0.567235 2_4:+60858565 Msa0339610:three_prime_UTR
CCATGCTTCAACTAGAAGCT+CGG 0.577303 2_4:+60857456 Msa0339610:CDS
ACTTTGAACGGATGCCAGCT+GGG 0.580923 2_4:-60858739 None:intergenic
AAGTTGTGACTGATAAAGAC+GGG 0.585830 2_4:+60858758 Msa0339610:three_prime_UTR
ACGTGAAAAGGATCTGCAGA+AGG 0.585962 2_4:+60857496 Msa0339610:CDS
AAAAGTTTGAAGGATGAGGT+CGG 0.585975 2_4:+60859051 Msa0339610:three_prime_UTR
TGAGTTGTACCAAAGTCTGT+TGG 0.586602 2_4:-60859333 None:intergenic
AAGAGCTAAAAGAAATTACA+TGG 0.589792 2_4:-60857568 None:intergenic
ATAGTATCACCACCAGCCAT+TGG 0.590312 2_4:-60859365 None:intergenic
AAAATTCATGACCTGGAGAG+AGG 0.594735 2_4:+60858180 Msa0339610:CDS
CAACTCAATCATATTGCCAA+TGG 0.601421 2_4:+60859349 Msa0339610:three_prime_UTR
TGATAAAGACGGGAAATCCA+TGG 0.602731 2_4:+60858768 Msa0339610:three_prime_UTR
TTCCAGGTAATGAATCACAT+TGG 0.602846 2_4:+60858254 Msa0339610:exon
ACTGTCTTAAAGATCCCAGC+TGG 0.606195 2_4:+60858725 Msa0339610:three_prime_UTR
ATGAGTACAATCCTAGTGGT+AGG 0.608028 2_4:+60859118 Msa0339610:three_prime_UTR
AAAGTTGTGACTGATAAAGA+CGG 0.614387 2_4:+60858757 Msa0339610:three_prime_UTR
GGAAGATCTTCAACAAACAC+TGG 0.622373 2_4:+60858358 Msa0339610:three_prime_UTR
GGTATTGGATACCTACCACT+AGG 0.628470 2_4:-60859129 None:intergenic
GTTGGAAATTGAACGGCAAG+AGG 0.628840 2_4:+60858227 Msa0339610:CDS
GGCAATTGAAAGCAATCGAG+CGG 0.632176 2_4:+60858686 Msa0339610:three_prime_UTR
CGTGAAAAGGATCTGCAGAA+GGG 0.641471 2_4:+60857497 Msa0339610:CDS
ATCATATTGCCAATGGCTGG+TGG 0.666389 2_4:+60859356 Msa0339610:three_prime_UTR
TTAAATGAGTACAATCCTAG+TGG 0.688336 2_4:+60859114 Msa0339610:three_prime_UTR
TACAATAAGCAAATATAACG+AGG 0.690296 2_4:+60857084 Msa0339610:CDS
TTATTGAGGCTTCATTTGGG+CGG 0.690646 2_4:+60859248 Msa0339610:three_prime_UTR
TGCTTCAACTAGAAGCTCGG+AGG 0.697392 2_4:+60857459 Msa0339610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTATATATATAATTGATAT+TGG + chr2_4:60857194-60857213 Msa0339610:intron 10.0%
!! TATTATTACATATATTCTTT+CGG + chr2_4:60857258-60857277 Msa0339610:intron 10.0%
!!! TTTTGCATTTAATTAATAAA+TGG + chr2_4:60859202-60859221 Msa0339610:three_prime_UTR 10.0%
!! GTTATATATATAATTGATAT+TGG + chr2_4:60857194-60857213 Msa0339610:intron 10.0%
!! TATTATTACATATATTCTTT+CGG + chr2_4:60857258-60857277 Msa0339610:intron 10.0%
!!! TTTTGCATTTAATTAATAAA+TGG + chr2_4:60859202-60859221 Msa0339610:three_prime_UTR 10.0%
!!! TCTTACTTTTTTATATTTCA+TGG + chr2_4:60857336-60857355 Msa0339610:intron 15.0%
!! TTAAAAAAACTCTAGATAAA+AGG - chr2_4:60858081-60858100 None:intergenic 15.0%
!! AACTTTAACAATATTAATTC+TGG - chr2_4:60858804-60858823 None:intergenic 15.0%
!!! TCTTACTTTTTTATATTTCA+TGG + chr2_4:60857336-60857355 Msa0339610:intron 15.0%
!! TTAAAAAAACTCTAGATAAA+AGG - chr2_4:60858081-60858100 None:intergenic 15.0%
!! AACTTTAACAATATTAATTC+TGG - chr2_4:60858804-60858823 None:intergenic 15.0%
!!! TTTTTAACACTTTTTCTGAT+AGG + chr2_4:60857629-60857648 Msa0339610:intron 20.0%
!! ATCAATTAACAGAACTAAAT+CGG + chr2_4:60857688-60857707 Msa0339610:intron 20.0%
!! CCAAAGTTATTAAAATAAGA+GGG - chr2_4:60857930-60857949 None:intergenic 20.0%
!! TCCAAAGTTATTAAAATAAG+AGG - chr2_4:60857931-60857950 None:intergenic 20.0%
!!! CTTATTTTAATAACTTTGGA+AGG + chr2_4:60857931-60857950 Msa0339610:intron 20.0%
!! TCTAGATGATAAGAAAAAAT+TGG + chr2_4:60858286-60858305 Msa0339610:three_prime_UTR 20.0%
!!! ATACACTGATTAATTTTTTG+CGG - chr2_4:60858424-60858443 None:intergenic 20.0%
!! TTCATAATAATTACAAAGCA+TGG + chr2_4:60858868-60858887 Msa0339610:intron 20.0%
!! TCATAATAATTACAAAGCAT+GGG + chr2_4:60858869-60858888 Msa0339610:intron 20.0%
!! ATGTAACATATATTAGATCA+CGG - chr2_4:60858990-60859009 None:intergenic 20.0%
!! GCTTATCTATATATATATGA+AGG + chr2_4:60859288-60859307 Msa0339610:three_prime_UTR 20.0%
!!! TTTTTAACACTTTTTCTGAT+AGG + chr2_4:60857629-60857648 Msa0339610:intron 20.0%
!! ATCAATTAACAGAACTAAAT+CGG + chr2_4:60857688-60857707 Msa0339610:intron 20.0%
!! CCAAAGTTATTAAAATAAGA+GGG - chr2_4:60857930-60857949 None:intergenic 20.0%
!! TCCAAAGTTATTAAAATAAG+AGG - chr2_4:60857931-60857950 None:intergenic 20.0%
!!! CTTATTTTAATAACTTTGGA+AGG + chr2_4:60857931-60857950 Msa0339610:intron 20.0%
!! TCTAGATGATAAGAAAAAAT+TGG + chr2_4:60858286-60858305 Msa0339610:three_prime_UTR 20.0%
!!! ATACACTGATTAATTTTTTG+CGG - chr2_4:60858424-60858443 None:intergenic 20.0%
!! TTCATAATAATTACAAAGCA+TGG + chr2_4:60858868-60858887 Msa0339610:intron 20.0%
!! TCATAATAATTACAAAGCAT+GGG + chr2_4:60858869-60858888 Msa0339610:intron 20.0%
!! ATGTAACATATATTAGATCA+CGG - chr2_4:60858990-60859009 None:intergenic 20.0%
!! GCTTATCTATATATATATGA+AGG + chr2_4:60859288-60859307 Msa0339610:three_prime_UTR 20.0%
! TACAATAAGCAAATATAACG+AGG + chr2_4:60857084-60857103 Msa0339610:CDS 25.0%
! ATGCTTGAACAGTTTATTAA+GGG + chr2_4:60857148-60857167 Msa0339610:CDS 25.0%
!!! ATTCCTTTTCATTGATTTAG+AGG + chr2_4:60857218-60857237 Msa0339610:intron 25.0%
! AAGAGCTAAAAGAAATTACA+TGG - chr2_4:60857571-60857590 None:intergenic 25.0%
!!! TGTAATTTCTTTTAGCTCTT+TGG + chr2_4:60857571-60857590 Msa0339610:CDS 25.0%
! AAAGTTAGCTAAAAGAATGA+GGG - chr2_4:60857819-60857838 None:intergenic 25.0%
! AAAAGTTAGCTAAAAGAATG+AGG - chr2_4:60857820-60857839 None:intergenic 25.0%
! GTTATTAAAATAAGAGGGAT+TGG - chr2_4:60857925-60857944 None:intergenic 25.0%
!!! CCCTCTTATTTTAATAACTT+TGG + chr2_4:60857927-60857946 Msa0339610:intron 25.0%
!!! CAAATGCATCATTTTTTCAT+CGG - chr2_4:60858027-60858046 None:intergenic 25.0%
!!! TACACTGATTAATTTTTTGC+GGG - chr2_4:60858423-60858442 None:intergenic 25.0%
! ATAATTTCTGTGAAAAGGAT+GGG + chr2_4:60858565-60858584 Msa0339610:three_prime_UTR 25.0%
! TAATAAATGGAAAGCAAGAA+AGG + chr2_4:60859215-60859234 Msa0339610:three_prime_UTR 25.0%
! AATAAATGGAAAGCAAGAAA+GGG + chr2_4:60859216-60859235 Msa0339610:three_prime_UTR 25.0%
! TACAATAAGCAAATATAACG+AGG + chr2_4:60857084-60857103 Msa0339610:CDS 25.0%
! ATGCTTGAACAGTTTATTAA+GGG + chr2_4:60857148-60857167 Msa0339610:CDS 25.0%
!!! ATTCCTTTTCATTGATTTAG+AGG + chr2_4:60857218-60857237 Msa0339610:intron 25.0%
! AAGAGCTAAAAGAAATTACA+TGG - chr2_4:60857571-60857590 None:intergenic 25.0%
!!! TGTAATTTCTTTTAGCTCTT+TGG + chr2_4:60857571-60857590 Msa0339610:CDS 25.0%
! AAAGTTAGCTAAAAGAATGA+GGG - chr2_4:60857819-60857838 None:intergenic 25.0%
! AAAAGTTAGCTAAAAGAATG+AGG - chr2_4:60857820-60857839 None:intergenic 25.0%
! GTTATTAAAATAAGAGGGAT+TGG - chr2_4:60857925-60857944 None:intergenic 25.0%
!!! CCCTCTTATTTTAATAACTT+TGG + chr2_4:60857927-60857946 Msa0339610:intron 25.0%
!!! CAAATGCATCATTTTTTCAT+CGG - chr2_4:60858027-60858046 None:intergenic 25.0%
!!! TACACTGATTAATTTTTTGC+GGG - chr2_4:60858423-60858442 None:intergenic 25.0%
! ATAATTTCTGTGAAAAGGAT+GGG + chr2_4:60858565-60858584 Msa0339610:three_prime_UTR 25.0%
! TAATAAATGGAAAGCAAGAA+AGG + chr2_4:60859215-60859234 Msa0339610:three_prime_UTR 25.0%
! AATAAATGGAAAGCAAGAAA+GGG + chr2_4:60859216-60859235 Msa0339610:three_prime_UTR 25.0%
!! TTTGTTTCTAAGGAAAGTGA+TGG + chr2_4:60857111-60857130 Msa0339610:CDS 30.0%
GATGCTTGAACAGTTTATTA+AGG + chr2_4:60857147-60857166 Msa0339610:CDS 30.0%
!!! CTTTTAGCTCTTTGGATTTA+TGG + chr2_4:60857579-60857598 Msa0339610:CDS 30.0%
! TAAATCGGCTTCTTTAAAAG+TGG + chr2_4:60857703-60857722 Msa0339610:intron 30.0%
!! CAAACAACACTTTTTGTGAT+TGG - chr2_4:60857730-60857749 None:intergenic 30.0%
!! CAATCACAAAAAGTGTTGTT+TGG + chr2_4:60857728-60857747 Msa0339610:intron 30.0%
! CTAACAATGTTAAATGGACT+TGG - chr2_4:60857853-60857872 None:intergenic 30.0%
GGAATGCTAACAATGTTAAA+TGG - chr2_4:60857859-60857878 None:intergenic 30.0%
ACTGAATGGTCTATAGATTA+GGG - chr2_4:60857880-60857899 None:intergenic 30.0%
ATTTGACACAAAAGACTGAA+TGG - chr2_4:60857894-60857913 None:intergenic 30.0%
CGATGAAAAAATGATGCATT+TGG + chr2_4:60858025-60858044 Msa0339610:CDS 30.0%
!!! TCAAGTTTTGAGGACTATTT+TGG + chr2_4:60858120-60858139 Msa0339610:intron 30.0%
TCACAAAAAAATTCATGACC+TGG + chr2_4:60858173-60858192 Msa0339610:CDS 30.0%
AAAATTGGAAGCAATCAGAA+TGG + chr2_4:60858301-60858320 Msa0339610:three_prime_UTR 30.0%
! CATCCTTTTCACAGAAATTA+TGG - chr2_4:60858566-60858585 None:intergenic 30.0%
CATAATTTCTGTGAAAAGGA+TGG + chr2_4:60858564-60858583 Msa0339610:three_prime_UTR 30.0%
!! ACTTGAGATTAAGCCATTTT+TGG + chr2_4:60858591-60858610 Msa0339610:three_prime_UTR 30.0%
TTCATCAGAAAACTTTCTCT+TGG - chr2_4:60858623-60858642 None:intergenic 30.0%
GAATGAGAAAAAAGCAACTA+AGG + chr2_4:60858645-60858664 Msa0339610:three_prime_UTR 30.0%
TTATCAGTCACAACTTTGAA+CGG - chr2_4:60858754-60858773 None:intergenic 30.0%
AAAGTTGTGACTGATAAAGA+CGG + chr2_4:60858757-60858776 Msa0339610:three_prime_UTR 30.0%
ATATGTTACATATATCACGC+AGG + chr2_4:60858999-60859018 Msa0339610:intron 30.0%
TGAAAAGCTGAAAAGTTTGA+AGG + chr2_4:60859041-60859060 Msa0339610:three_prime_UTR 30.0%
TTAAATGAGTACAATCCTAG+TGG + chr2_4:60859114-60859133 Msa0339610:three_prime_UTR 30.0%
AAGGGATAGAAAGTTTATTG+AGG + chr2_4:60859234-60859253 Msa0339610:three_prime_UTR 30.0%
AAGTTTATTGAGGCTTCATT+TGG + chr2_4:60859244-60859263 Msa0339610:three_prime_UTR 30.0%
AGTTTATTGAGGCTTCATTT+GGG + chr2_4:60859245-60859264 Msa0339610:three_prime_UTR 30.0%
!! TTTGTTTCTAAGGAAAGTGA+TGG + chr2_4:60857111-60857130 Msa0339610:CDS 30.0%
GATGCTTGAACAGTTTATTA+AGG + chr2_4:60857147-60857166 Msa0339610:CDS 30.0%
!!! CTTTTAGCTCTTTGGATTTA+TGG + chr2_4:60857579-60857598 Msa0339610:CDS 30.0%
! TAAATCGGCTTCTTTAAAAG+TGG + chr2_4:60857703-60857722 Msa0339610:intron 30.0%
!! CAAACAACACTTTTTGTGAT+TGG - chr2_4:60857730-60857749 None:intergenic 30.0%
!! CAATCACAAAAAGTGTTGTT+TGG + chr2_4:60857728-60857747 Msa0339610:intron 30.0%
! CTAACAATGTTAAATGGACT+TGG - chr2_4:60857853-60857872 None:intergenic 30.0%
GGAATGCTAACAATGTTAAA+TGG - chr2_4:60857859-60857878 None:intergenic 30.0%
ACTGAATGGTCTATAGATTA+GGG - chr2_4:60857880-60857899 None:intergenic 30.0%
ATTTGACACAAAAGACTGAA+TGG - chr2_4:60857894-60857913 None:intergenic 30.0%
CGATGAAAAAATGATGCATT+TGG + chr2_4:60858025-60858044 Msa0339610:CDS 30.0%
!!! TCAAGTTTTGAGGACTATTT+TGG + chr2_4:60858120-60858139 Msa0339610:intron 30.0%
TCACAAAAAAATTCATGACC+TGG + chr2_4:60858173-60858192 Msa0339610:CDS 30.0%
AAAATTGGAAGCAATCAGAA+TGG + chr2_4:60858301-60858320 Msa0339610:three_prime_UTR 30.0%
! CATCCTTTTCACAGAAATTA+TGG - chr2_4:60858566-60858585 None:intergenic 30.0%
CATAATTTCTGTGAAAAGGA+TGG + chr2_4:60858564-60858583 Msa0339610:three_prime_UTR 30.0%
!! ACTTGAGATTAAGCCATTTT+TGG + chr2_4:60858591-60858610 Msa0339610:three_prime_UTR 30.0%
TTCATCAGAAAACTTTCTCT+TGG - chr2_4:60858623-60858642 None:intergenic 30.0%
GAATGAGAAAAAAGCAACTA+AGG + chr2_4:60858645-60858664 Msa0339610:three_prime_UTR 30.0%
TTATCAGTCACAACTTTGAA+CGG - chr2_4:60858754-60858773 None:intergenic 30.0%
AAAGTTGTGACTGATAAAGA+CGG + chr2_4:60858757-60858776 Msa0339610:three_prime_UTR 30.0%
ATATGTTACATATATCACGC+AGG + chr2_4:60858999-60859018 Msa0339610:intron 30.0%
TGAAAAGCTGAAAAGTTTGA+AGG + chr2_4:60859041-60859060 Msa0339610:three_prime_UTR 30.0%
TTAAATGAGTACAATCCTAG+TGG + chr2_4:60859114-60859133 Msa0339610:three_prime_UTR 30.0%
AAGGGATAGAAAGTTTATTG+AGG + chr2_4:60859234-60859253 Msa0339610:three_prime_UTR 30.0%
AAGTTTATTGAGGCTTCATT+TGG + chr2_4:60859244-60859263 Msa0339610:three_prime_UTR 30.0%
AGTTTATTGAGGCTTCATTT+GGG + chr2_4:60859245-60859264 Msa0339610:three_prime_UTR 30.0%
!! ACGAGGCTAATTTGTTTCTA+AGG + chr2_4:60857101-60857120 Msa0339610:CDS 35.0%
!! GAAAGTGATGGATCAAAAAG+AGG + chr2_4:60857123-60857142 Msa0339610:CDS 35.0%
TCGCCTCTAAATCAATGAAA+AGG - chr2_4:60857224-60857243 None:intergenic 35.0%
!! TGCATCTTGCTGATTTCTAA+GGG - chr2_4:60857386-60857405 None:intergenic 35.0%
TCAACTTATGTCACGTGAAA+AGG + chr2_4:60857484-60857503 Msa0339610:CDS 35.0%
!! AGTGTTGTTTGGAGTTTCTT+AGG + chr2_4:60857739-60857758 Msa0339610:intron 35.0%
GTTGTGTGTATAAATCTGCT+TGG + chr2_4:60857790-60857809 Msa0339610:intron 35.0%
GACTGAATGGTCTATAGATT+AGG - chr2_4:60857881-60857900 None:intergenic 35.0%
! TCCTGTTGTTTACAGAATGA+TGG + chr2_4:60857980-60857999 Msa0339610:CDS 35.0%
AATAGTCCTCAAAACTTGAG+TGG - chr2_4:60858119-60858138 None:intergenic 35.0%
ACTTGATGCAAAACAAGCAT+TGG + chr2_4:60858203-60858222 Msa0339610:CDS 35.0%
CATTGGAGTTGGAAATTGAA+CGG + chr2_4:60858220-60858239 Msa0339610:CDS 35.0%
TTCCAGGTAATGAATCACAT+TGG + chr2_4:60858254-60858273 Msa0339610:exon 35.0%
GTGTATGTATCTATCTCATG+TGG + chr2_4:60858438-60858457 Msa0339610:intron 35.0%
CAACCCAAACAATGAAATCA+AGG - chr2_4:60858485-60858504 None:intergenic 35.0%
GAGCCATAATTTCTGTGAAA+AGG + chr2_4:60858560-60858579 Msa0339610:three_prime_UTR 35.0%
AAGTTGTGACTGATAAAGAC+GGG + chr2_4:60858758-60858777 Msa0339610:three_prime_UTR 35.0%
! ATCACGCAGGAAATTTTAGA+CGG + chr2_4:60859012-60859031 Msa0339610:intron 35.0%
AAAAGTTTGAAGGATGAGGT+CGG + chr2_4:60859051-60859070 Msa0339610:three_prime_UTR 35.0%
CAACTCAATCATATTGCCAA+TGG + chr2_4:60859349-60859368 Msa0339610:three_prime_UTR 35.0%
!! ACGAGGCTAATTTGTTTCTA+AGG + chr2_4:60857101-60857120 Msa0339610:CDS 35.0%
!! GAAAGTGATGGATCAAAAAG+AGG + chr2_4:60857123-60857142 Msa0339610:CDS 35.0%
TCGCCTCTAAATCAATGAAA+AGG - chr2_4:60857224-60857243 None:intergenic 35.0%
!! TGCATCTTGCTGATTTCTAA+GGG - chr2_4:60857386-60857405 None:intergenic 35.0%
TCAACTTATGTCACGTGAAA+AGG + chr2_4:60857484-60857503 Msa0339610:CDS 35.0%
!! AGTGTTGTTTGGAGTTTCTT+AGG + chr2_4:60857739-60857758 Msa0339610:intron 35.0%
GTTGTGTGTATAAATCTGCT+TGG + chr2_4:60857790-60857809 Msa0339610:intron 35.0%
GACTGAATGGTCTATAGATT+AGG - chr2_4:60857881-60857900 None:intergenic 35.0%
! TCCTGTTGTTTACAGAATGA+TGG + chr2_4:60857980-60857999 Msa0339610:CDS 35.0%
AATAGTCCTCAAAACTTGAG+TGG - chr2_4:60858119-60858138 None:intergenic 35.0%
ACTTGATGCAAAACAAGCAT+TGG + chr2_4:60858203-60858222 Msa0339610:CDS 35.0%
CATTGGAGTTGGAAATTGAA+CGG + chr2_4:60858220-60858239 Msa0339610:CDS 35.0%
TTCCAGGTAATGAATCACAT+TGG + chr2_4:60858254-60858273 Msa0339610:exon 35.0%
GTGTATGTATCTATCTCATG+TGG + chr2_4:60858438-60858457 Msa0339610:intron 35.0%
CAACCCAAACAATGAAATCA+AGG - chr2_4:60858485-60858504 None:intergenic 35.0%
GAGCCATAATTTCTGTGAAA+AGG + chr2_4:60858560-60858579 Msa0339610:three_prime_UTR 35.0%
AAGTTGTGACTGATAAAGAC+GGG + chr2_4:60858758-60858777 Msa0339610:three_prime_UTR 35.0%
! ATCACGCAGGAAATTTTAGA+CGG + chr2_4:60859012-60859031 Msa0339610:intron 35.0%
AAAAGTTTGAAGGATGAGGT+CGG + chr2_4:60859051-60859070 Msa0339610:three_prime_UTR 35.0%
CAACTCAATCATATTGCCAA+TGG + chr2_4:60859349-60859368 Msa0339610:three_prime_UTR 35.0%
GATTTAGAGGCGAAACATTC+TGG + chr2_4:60857231-60857250 Msa0339610:intron 40.0%
!! CTGCATCTTGCTGATTTCTA+AGG - chr2_4:60857387-60857406 None:intergenic 40.0%
GCCATCATTCTGTAAACAAC+AGG - chr2_4:60857984-60858003 None:intergenic 40.0%
! ATGTGTCCACTCAAGTTTTG+AGG + chr2_4:60858110-60858129 Msa0339610:intron 40.0%
AAAATTCATGACCTGGAGAG+AGG + chr2_4:60858180-60858199 Msa0339610:CDS 40.0%
!! TGCAAAACAAGCATTGGAGT+TGG + chr2_4:60858209-60858228 Msa0339610:CDS 40.0%
CTCCAATGTGATTCATTACC+TGG - chr2_4:60858259-60858278 None:intergenic 40.0%
GCAGGAAAAAGAAGAGGAAT+TGG + chr2_4:60858328-60858347 Msa0339610:three_prime_UTR 40.0%
GGAAAAAGAAGAGGAATTGG+AGG + chr2_4:60858331-60858350 Msa0339610:three_prime_UTR 40.0%
GGAAGATCTTCAACAAACAC+TGG + chr2_4:60858358-60858377 Msa0339610:three_prime_UTR 40.0%
CGGCCTTGATTTCATTGTTT+GGG + chr2_4:60858479-60858498 Msa0339610:intron 40.0%
! ATTCTTTTCCTTGTTCGCAG+TGG + chr2_4:60858512-60858531 Msa0339610:intron 40.0%
TTCACAGAAATTATGGCTCG+AGG - chr2_4:60858559-60858578 None:intergenic 40.0%
TGATAAAGACGGGAAATCCA+TGG + chr2_4:60858768-60858787 Msa0339610:three_prime_UTR 40.0%
!! ATTCTGGAGTCATTGTACCA+TGG - chr2_4:60858788-60858807 None:intergenic 40.0%
TACAAAGCATGGGATGCTAT+TGG + chr2_4:60858879-60858898 Msa0339610:intron 40.0%
TTTCCCTGATATGAACTGCA+TGG + chr2_4:60858963-60858982 Msa0339610:intron 40.0%
GCTGAAAAGTTTGAAGGATG+AGG + chr2_4:60859047-60859066 Msa0339610:three_prime_UTR 40.0%
AAAGTTTGAAGGATGAGGTC+GGG + chr2_4:60859052-60859071 Msa0339610:three_prime_UTR 40.0%
ATGAGTACAATCCTAGTGGT+AGG + chr2_4:60859118-60859137 Msa0339610:three_prime_UTR 40.0%
TAGTGGTAGGTATCCAATAC+CGG + chr2_4:60859131-60859150 Msa0339610:three_prime_UTR 40.0%
AAATTCCAGAGTTCCGGTAT+TGG - chr2_4:60859147-60859166 None:intergenic 40.0%
TCCTGAAAATTCCAGAGTTC+CGG - chr2_4:60859153-60859172 None:intergenic 40.0%
!!! GAACTCTGGAATTTTCAGGA+AGG + chr2_4:60859153-60859172 Msa0339610:three_prime_UTR 40.0%
!! TCTGGAATTTTCAGGAAGGA+AGG + chr2_4:60859157-60859176 Msa0339610:three_prime_UTR 40.0%
!! GAATTTTCAGGAAGGAAGGA+AGG + chr2_4:60859161-60859180 Msa0339610:three_prime_UTR 40.0%
TTATTGAGGCTTCATTTGGG+CGG + chr2_4:60859248-60859267 Msa0339610:three_prime_UTR 40.0%
!! ATTCTAGCTCCAACAGACTT+TGG + chr2_4:60859324-60859343 Msa0339610:three_prime_UTR 40.0%
TGAGTTGTACCAAAGTCTGT+TGG - chr2_4:60859336-60859355 None:intergenic 40.0%
TCAATCATATTGCCAATGGC+TGG + chr2_4:60859353-60859372 Msa0339610:three_prime_UTR 40.0%
GATTTAGAGGCGAAACATTC+TGG + chr2_4:60857231-60857250 Msa0339610:intron 40.0%
!! CTGCATCTTGCTGATTTCTA+AGG - chr2_4:60857387-60857406 None:intergenic 40.0%
GCCATCATTCTGTAAACAAC+AGG - chr2_4:60857984-60858003 None:intergenic 40.0%
! ATGTGTCCACTCAAGTTTTG+AGG + chr2_4:60858110-60858129 Msa0339610:intron 40.0%
AAAATTCATGACCTGGAGAG+AGG + chr2_4:60858180-60858199 Msa0339610:CDS 40.0%
!! TGCAAAACAAGCATTGGAGT+TGG + chr2_4:60858209-60858228 Msa0339610:CDS 40.0%
CTCCAATGTGATTCATTACC+TGG - chr2_4:60858259-60858278 None:intergenic 40.0%
GCAGGAAAAAGAAGAGGAAT+TGG + chr2_4:60858328-60858347 Msa0339610:three_prime_UTR 40.0%
GGAAAAAGAAGAGGAATTGG+AGG + chr2_4:60858331-60858350 Msa0339610:three_prime_UTR 40.0%
GGAAGATCTTCAACAAACAC+TGG + chr2_4:60858358-60858377 Msa0339610:three_prime_UTR 40.0%
CGGCCTTGATTTCATTGTTT+GGG + chr2_4:60858479-60858498 Msa0339610:intron 40.0%
! ATTCTTTTCCTTGTTCGCAG+TGG + chr2_4:60858512-60858531 Msa0339610:intron 40.0%
TTCACAGAAATTATGGCTCG+AGG - chr2_4:60858559-60858578 None:intergenic 40.0%
TGATAAAGACGGGAAATCCA+TGG + chr2_4:60858768-60858787 Msa0339610:three_prime_UTR 40.0%
!! ATTCTGGAGTCATTGTACCA+TGG - chr2_4:60858788-60858807 None:intergenic 40.0%
TACAAAGCATGGGATGCTAT+TGG + chr2_4:60858879-60858898 Msa0339610:intron 40.0%
TTTCCCTGATATGAACTGCA+TGG + chr2_4:60858963-60858982 Msa0339610:intron 40.0%
GCTGAAAAGTTTGAAGGATG+AGG + chr2_4:60859047-60859066 Msa0339610:three_prime_UTR 40.0%
AAAGTTTGAAGGATGAGGTC+GGG + chr2_4:60859052-60859071 Msa0339610:three_prime_UTR 40.0%
ATGAGTACAATCCTAGTGGT+AGG + chr2_4:60859118-60859137 Msa0339610:three_prime_UTR 40.0%
TAGTGGTAGGTATCCAATAC+CGG + chr2_4:60859131-60859150 Msa0339610:three_prime_UTR 40.0%
AAATTCCAGAGTTCCGGTAT+TGG - chr2_4:60859147-60859166 None:intergenic 40.0%
TCCTGAAAATTCCAGAGTTC+CGG - chr2_4:60859153-60859172 None:intergenic 40.0%
!!! GAACTCTGGAATTTTCAGGA+AGG + chr2_4:60859153-60859172 Msa0339610:three_prime_UTR 40.0%
!! TCTGGAATTTTCAGGAAGGA+AGG + chr2_4:60859157-60859176 Msa0339610:three_prime_UTR 40.0%
!! GAATTTTCAGGAAGGAAGGA+AGG + chr2_4:60859161-60859180 Msa0339610:three_prime_UTR 40.0%
TTATTGAGGCTTCATTTGGG+CGG + chr2_4:60859248-60859267 Msa0339610:three_prime_UTR 40.0%
!! ATTCTAGCTCCAACAGACTT+TGG + chr2_4:60859324-60859343 Msa0339610:three_prime_UTR 40.0%
TGAGTTGTACCAAAGTCTGT+TGG - chr2_4:60859336-60859355 None:intergenic 40.0%
TCAATCATATTGCCAATGGC+TGG + chr2_4:60859353-60859372 Msa0339610:three_prime_UTR 40.0%
AGAAATCAGCAAGATGCAGC+AGG + chr2_4:60857388-60857407 Msa0339610:intron 45.0%
CCATGCTTCAACTAGAAGCT+CGG + chr2_4:60857456-60857475 Msa0339610:CDS 45.0%
ACGTGAAAAGGATCTGCAGA+AGG + chr2_4:60857496-60857515 Msa0339610:CDS 45.0%
CGTGAAAAGGATCTGCAGAA+GGG + chr2_4:60857497-60857516 Msa0339610:CDS 45.0%
! GCATTTGGCTGAAGAGCATA+AGG + chr2_4:60858040-60858059 Msa0339610:CDS 45.0%
GTTGGAAATTGAACGGCAAG+AGG + chr2_4:60858227-60858246 Msa0339610:CDS 45.0%
ACAATGAAATCAAGGCCGCA+AGG - chr2_4:60858477-60858496 None:intergenic 45.0%
GCGGCCTTGATTTCATTGTT+TGG + chr2_4:60858478-60858497 Msa0339610:intron 45.0%
TTTCCTTGTTCGCAGTGGAT+TGG + chr2_4:60858517-60858536 Msa0339610:intron 45.0%
CTCTTGGCTGCTTCCAAAAA+TGG - chr2_4:60858607-60858626 None:intergenic 45.0%
AGGCACAACTTCGCGAAAAA+TGG + chr2_4:60858665-60858684 Msa0339610:three_prime_UTR 45.0%
GGCAATTGAAAGCAATCGAG+CGG + chr2_4:60858686-60858705 Msa0339610:three_prime_UTR 45.0%
ACTGTCTTAAAGATCCCAGC+TGG + chr2_4:60858725-60858744 Msa0339610:three_prime_UTR 45.0%
GGTCCATGCAGTTCATATCA+GGG - chr2_4:60858969-60858988 None:intergenic 45.0%
AAGTTTGAAGGATGAGGTCG+GGG + chr2_4:60859053-60859072 Msa0339610:three_prime_UTR 45.0%
! GGTATTGGATACCTACCACT+AGG - chr2_4:60859132-60859151 None:intergenic 45.0%
!!! ACCGGAACTCTGGAATTTTC+AGG + chr2_4:60859149-60859168 Msa0339610:three_prime_UTR 45.0%
!! AGGAAGGAAGGCTTTGTTGA+AGG + chr2_4:60859173-60859192 Msa0339610:three_prime_UTR 45.0%
!! AGGAAGGCTTTGTTGAAGGA+AGG + chr2_4:60859177-60859196 Msa0339610:three_prime_UTR 45.0%
GGCGGTAAGAACATAGAATC+AGG + chr2_4:60859266-60859285 Msa0339610:three_prime_UTR 45.0%
ATCATATTGCCAATGGCTGG+TGG + chr2_4:60859356-60859375 Msa0339610:three_prime_UTR 45.0%
ATAGTATCACCACCAGCCAT+TGG - chr2_4:60859368-60859387 None:intergenic 45.0%
AGAAATCAGCAAGATGCAGC+AGG + chr2_4:60857388-60857407 Msa0339610:intron 45.0%
CCATGCTTCAACTAGAAGCT+CGG + chr2_4:60857456-60857475 Msa0339610:CDS 45.0%
ACGTGAAAAGGATCTGCAGA+AGG + chr2_4:60857496-60857515 Msa0339610:CDS 45.0%
CGTGAAAAGGATCTGCAGAA+GGG + chr2_4:60857497-60857516 Msa0339610:CDS 45.0%
! GCATTTGGCTGAAGAGCATA+AGG + chr2_4:60858040-60858059 Msa0339610:CDS 45.0%
GTTGGAAATTGAACGGCAAG+AGG + chr2_4:60858227-60858246 Msa0339610:CDS 45.0%
ACAATGAAATCAAGGCCGCA+AGG - chr2_4:60858477-60858496 None:intergenic 45.0%
GCGGCCTTGATTTCATTGTT+TGG + chr2_4:60858478-60858497 Msa0339610:intron 45.0%
TTTCCTTGTTCGCAGTGGAT+TGG + chr2_4:60858517-60858536 Msa0339610:intron 45.0%
CTCTTGGCTGCTTCCAAAAA+TGG - chr2_4:60858607-60858626 None:intergenic 45.0%
AGGCACAACTTCGCGAAAAA+TGG + chr2_4:60858665-60858684 Msa0339610:three_prime_UTR 45.0%
GGCAATTGAAAGCAATCGAG+CGG + chr2_4:60858686-60858705 Msa0339610:three_prime_UTR 45.0%
ACTGTCTTAAAGATCCCAGC+TGG + chr2_4:60858725-60858744 Msa0339610:three_prime_UTR 45.0%
GGTCCATGCAGTTCATATCA+GGG - chr2_4:60858969-60858988 None:intergenic 45.0%
AAGTTTGAAGGATGAGGTCG+GGG + chr2_4:60859053-60859072 Msa0339610:three_prime_UTR 45.0%
! GGTATTGGATACCTACCACT+AGG - chr2_4:60859132-60859151 None:intergenic 45.0%
!!! ACCGGAACTCTGGAATTTTC+AGG + chr2_4:60859149-60859168 Msa0339610:three_prime_UTR 45.0%
!! AGGAAGGAAGGCTTTGTTGA+AGG + chr2_4:60859173-60859192 Msa0339610:three_prime_UTR 45.0%
!! AGGAAGGCTTTGTTGAAGGA+AGG + chr2_4:60859177-60859196 Msa0339610:three_prime_UTR 45.0%
GGCGGTAAGAACATAGAATC+AGG + chr2_4:60859266-60859285 Msa0339610:three_prime_UTR 45.0%
ATCATATTGCCAATGGCTGG+TGG + chr2_4:60859356-60859375 Msa0339610:three_prime_UTR 45.0%
ATAGTATCACCACCAGCCAT+TGG - chr2_4:60859368-60859387 None:intergenic 45.0%
! GCAGGTTGAACGCGATTATC+TGG + chr2_4:60857406-60857425 Msa0339610:CDS 50.0%
! CCGAGCTTCTAGTTGAAGCA+TGG - chr2_4:60857459-60857478 None:intergenic 50.0%
TGCTTCAACTAGAAGCTCGG+AGG + chr2_4:60857459-60857478 Msa0339610:CDS 50.0%
TTAGGAGTCCCACATTGCTC+AGG + chr2_4:60857757-60857776 Msa0339610:intron 50.0%
TCCCACATTGCTCAGGTTCT+CGG + chr2_4:60857764-60857783 Msa0339610:intron 50.0%
TTGCATCAAGTCCTCTCTCC+AGG - chr2_4:60858194-60858213 None:intergenic 50.0%
AGCAATCAGAATGGAGCTGC+AGG + chr2_4:60858310-60858329 Msa0339610:three_prime_UTR 50.0%
GGAGCTGCAGGAAAAAGAAG+AGG + chr2_4:60858322-60858341 Msa0339610:three_prime_UTR 50.0%
AGAAGAGGAATTGGAGGTCG+TGG + chr2_4:60858337-60858356 Msa0339610:three_prime_UTR 50.0%
!! GGTTTGTTGCTGTTGCCTTG+CGG + chr2_4:60858459-60858478 Msa0339610:intron 50.0%
CATCCAATCCACTGCGAACA+AGG - chr2_4:60858523-60858542 None:intergenic 50.0%
!! GTGGATTGGATGCCCAAAGA+AGG + chr2_4:60858531-60858550 Msa0339610:intron 50.0%
ACTTTGAACGGATGCCAGCT+GGG - chr2_4:60858742-60858761 None:intergenic 50.0%
AACTTTGAACGGATGCCAGC+TGG - chr2_4:60858743-60858762 None:intergenic 50.0%
TGCTAGCAGTGGCAAGTTTC+AGG - chr2_4:60858926-60858945 None:intergenic 50.0%
TGCCACTGCTAGCACTTACT+TGG + chr2_4:60858932-60858951 Msa0339610:intron 50.0%
TGCCAAGTAAGTGCTAGCAG+TGG - chr2_4:60858937-60858956 None:intergenic 50.0%
CGGTCCATGCAGTTCATATC+AGG - chr2_4:60858970-60858989 None:intergenic 50.0%
GGTATCCAATACCGGAACTC+TGG + chr2_4:60859139-60859158 Msa0339610:three_prime_UTR 50.0%
! GCAGGTTGAACGCGATTATC+TGG + chr2_4:60857406-60857425 Msa0339610:CDS 50.0%
! CCGAGCTTCTAGTTGAAGCA+TGG - chr2_4:60857459-60857478 None:intergenic 50.0%
TGCTTCAACTAGAAGCTCGG+AGG + chr2_4:60857459-60857478 Msa0339610:CDS 50.0%
TTAGGAGTCCCACATTGCTC+AGG + chr2_4:60857757-60857776 Msa0339610:intron 50.0%
TCCCACATTGCTCAGGTTCT+CGG + chr2_4:60857764-60857783 Msa0339610:intron 50.0%
TTGCATCAAGTCCTCTCTCC+AGG - chr2_4:60858194-60858213 None:intergenic 50.0%
AGCAATCAGAATGGAGCTGC+AGG + chr2_4:60858310-60858329 Msa0339610:three_prime_UTR 50.0%
GGAGCTGCAGGAAAAAGAAG+AGG + chr2_4:60858322-60858341 Msa0339610:three_prime_UTR 50.0%
AGAAGAGGAATTGGAGGTCG+TGG + chr2_4:60858337-60858356 Msa0339610:three_prime_UTR 50.0%
!! GGTTTGTTGCTGTTGCCTTG+CGG + chr2_4:60858459-60858478 Msa0339610:intron 50.0%
CATCCAATCCACTGCGAACA+AGG - chr2_4:60858523-60858542 None:intergenic 50.0%
!! GTGGATTGGATGCCCAAAGA+AGG + chr2_4:60858531-60858550 Msa0339610:intron 50.0%
ACTTTGAACGGATGCCAGCT+GGG - chr2_4:60858742-60858761 None:intergenic 50.0%
AACTTTGAACGGATGCCAGC+TGG - chr2_4:60858743-60858762 None:intergenic 50.0%
TGCTAGCAGTGGCAAGTTTC+AGG - chr2_4:60858926-60858945 None:intergenic 50.0%
TGCCACTGCTAGCACTTACT+TGG + chr2_4:60858932-60858951 Msa0339610:intron 50.0%
TGCCAAGTAAGTGCTAGCAG+TGG - chr2_4:60858937-60858956 None:intergenic 50.0%
CGGTCCATGCAGTTCATATC+AGG - chr2_4:60858970-60858989 None:intergenic 50.0%
GGTATCCAATACCGGAACTC+TGG + chr2_4:60859139-60859158 Msa0339610:three_prime_UTR 50.0%
CCCGAGAACCTGAGCAATGT+GGG - chr2_4:60857768-60857787 None:intergenic 55.0%
CCCACATTGCTCAGGTTCTC+GGG + chr2_4:60857765-60857784 Msa0339610:intron 55.0%
TCCCGAGAACCTGAGCAATG+TGG - chr2_4:60857769-60857788 None:intergenic 55.0%
AACGGCAAGAGGAGCTTTCC+AGG + chr2_4:60858238-60858257 Msa0339610:CDS 55.0%
TGGCTCGAGGAGCCTTCTTT+GGG - chr2_4:60858546-60858565 None:intergenic 55.0%
ATGGCTCGAGGAGCCTTCTT+TGG - chr2_4:60858547-60858566 None:intergenic 55.0%
AATCGAGCGGCGCTCAAAGT+GGG + chr2_4:60858699-60858718 Msa0339610:three_prime_UTR 55.0%
GGCGCATGATGCAGTAGCTA+CGG + chr2_4:60859080-60859099 Msa0339610:three_prime_UTR 55.0%
! TGCAGTAGCTACGGCTCTGA+TGG + chr2_4:60859089-60859108 Msa0339610:three_prime_UTR 55.0%
CCCGAGAACCTGAGCAATGT+GGG - chr2_4:60857768-60857787 None:intergenic 55.0%
CCCACATTGCTCAGGTTCTC+GGG + chr2_4:60857765-60857784 Msa0339610:intron 55.0%
TCCCGAGAACCTGAGCAATG+TGG - chr2_4:60857769-60857788 None:intergenic 55.0%
AACGGCAAGAGGAGCTTTCC+AGG + chr2_4:60858238-60858257 Msa0339610:CDS 55.0%
TGGCTCGAGGAGCCTTCTTT+GGG - chr2_4:60858546-60858565 None:intergenic 55.0%
ATGGCTCGAGGAGCCTTCTT+TGG - chr2_4:60858547-60858566 None:intergenic 55.0%
AATCGAGCGGCGCTCAAAGT+GGG + chr2_4:60858699-60858718 Msa0339610:three_prime_UTR 55.0%
GGCGCATGATGCAGTAGCTA+CGG + chr2_4:60859080-60859099 Msa0339610:three_prime_UTR 55.0%
! TGCAGTAGCTACGGCTCTGA+TGG + chr2_4:60859089-60859108 Msa0339610:three_prime_UTR 55.0%
CAATCGAGCGGCGCTCAAAG+TGG + chr2_4:60858698-60858717 Msa0339610:three_prime_UTR 60.0%
GAAGGATGAGGTCGGGGAAG+AGG + chr2_4:60859059-60859078 Msa0339610:three_prime_UTR 60.0%
CAATCGAGCGGCGCTCAAAG+TGG + chr2_4:60858698-60858717 Msa0339610:three_prime_UTR 60.0%
GAAGGATGAGGTCGGGGAAG+AGG + chr2_4:60859059-60859078 Msa0339610:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 60857070 60859447 60857070 ID=Msa0339610;Name=Msa0339610
chr2_4 mRNA 60857070 60859447 60857070 ID=Msa0339610-mRNA-1;Parent=Msa0339610;Name=Msa0339610-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.4|0.33|1|1|0.83|6|861|175
chr2_4 exon 60857070 60857169 60857070 ID=Msa0339610-mRNA-1:exon:18950;Parent=Msa0339610-mRNA-1
chr2_4 exon 60857390 60857600 60857390 ID=Msa0339610-mRNA-1:exon:18951;Parent=Msa0339610-mRNA-1
chr2_4 exon 60857953 60858061 60857953 ID=Msa0339610-mRNA-1:exon:18952;Parent=Msa0339610-mRNA-1
chr2_4 exon 60858156 60858439 60858156 ID=Msa0339610-mRNA-1:exon:18953;Parent=Msa0339610-mRNA-1
chr2_4 exon 60858532 60858789 60858532 ID=Msa0339610-mRNA-1:exon:18954;Parent=Msa0339610-mRNA-1
chr2_4 exon 60859021 60859447 60859021 ID=Msa0339610-mRNA-1:exon:18955;Parent=Msa0339610-mRNA-1
chr2_4 CDS 60857070 60857169 60857070 ID=Msa0339610-mRNA-1:cds;Parent=Msa0339610-mRNA-1
chr2_4 CDS 60857390 60857600 60857390 ID=Msa0339610-mRNA-1:cds;Parent=Msa0339610-mRNA-1
chr2_4 CDS 60857953 60858061 60857953 ID=Msa0339610-mRNA-1:cds;Parent=Msa0339610-mRNA-1
chr2_4 CDS 60858156 60858263 60858156 ID=Msa0339610-mRNA-1:cds;Parent=Msa0339610-mRNA-1
chr2_4 three_prime_UTR 60858264 60858439 60858264 ID=Msa0339610-mRNA-1:three_prime_utr;Parent=Msa0339610-mRNA-1
chr2_4 three_prime_UTR 60858532 60858789 60858532 ID=Msa0339610-mRNA-1:three_prime_utr;Parent=Msa0339610-mRNA-1
chr2_4 three_prime_UTR 60859021 60859447 60859021 ID=Msa0339610-mRNA-1:three_prime_utr;Parent=Msa0339610-mRNA-1
Gene Sequence

>Msa0339610

ATGGAATTGGATCATACAATAAGCAAATATAACGAGGCTAATTTGTTTCTAAGGAAAGTGATGGATCAAAAAGAGGAGATGCTTGAACAGTTTATTAAGGAAATCAGCAAGATGCAGCAGGTTGAACGCGATTATCTGGAGAGCATGTCGAAGAATTATGAAAAAGCCATGCTTCAACTAGAAGCTCGGAGGAATCAACTTATGTCACGTGAAAAGGATCTGCAGAAGGGTCAAGAAGATAATTACATCGAGAGAAATAAGCAATATTTTCAGACGAGCCATGTAATTTCTTTTAGCTCTTTGGATTTATGGATTAAATCTGTTCTTTGTGTTCTTCATCCTGTTGTTTACAGAATGATGGCAATAGCAGAGCAACAACGAGCCGATGAAAAAATGATGCATTTGGCTGAAGAGCATAAGAAAGAAAAAGAGAAACTTCACAAAAAAATTCATGACCTGGAGAGAGGACTTGATGCAAAACAAGCATTGGAGTTGGAAATTGAACGGCAAGAGGAGCTTTCCAGGTAA
Protein sequence

>Msa0339610

MELDHTISKYNEANLFLRKVMDQKEEMLEQFIKEISKMQQVERDYLESMSKNYEKAMLQLEARRNQLMSREKDLQKGQEDNYIERNKQYFQTSHVISFSSLDLWIKSVLCVLHPVVYRMMAIAEQQRADEKMMHLAEEHKKEKEKLHKKIHDLERGLDAKQALELEIERQEELSR*