Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340280 | XP_003597485.1 | 97.674 | 129 | 3 | 0 | 29 | 157 | 6 | 134 | 5.67e-83 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0340280 | Msa0758230 | 0.808066 | 3.718150e-50 | -8.615850e-47 |
| Msa0340280 | Msa1210660 | -0.805647 | 1.206607e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340280 | MtrunA17_Chr2g0329211 | 97.674 | 129 | 3 | 0 | 29 | 157 | 6 | 134 | 5.21e-87 | 250 |
| Msa0340280 | MtrunA17_Chr7g0258501 | 55.639 | 133 | 53 | 4 | 29 | 157 | 6 | 136 | 5.28e-35 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340280 | AT3G57930.1 | 52.899 | 138 | 50 | 5 | 29 | 156 | 6 | 138 | 3.50e-27 | 99.4 |
| Msa0340280 | AT3G57930.2 | 52.899 | 138 | 50 | 5 | 29 | 156 | 6 | 138 | 3.50e-27 | 99.4 |
| Msa0340280 | AT2G42190.3 | 47.761 | 134 | 63 | 3 | 29 | 156 | 6 | 138 | 8.39e-21 | 83.2 |
| Msa0340280 | AT2G42190.1 | 47.761 | 134 | 63 | 3 | 29 | 156 | 6 | 138 | 8.39e-21 | 83.2 |
| Msa0340280 | AT2G42190.2 | 47.761 | 134 | 63 | 3 | 29 | 156 | 6 | 138 | 8.39e-21 | 83.2 |
Find 30 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAACTTGTCTTCATTTC+TGG | 0.111569 | 2_4:-61657525 | Msa0340280:intron |
| TCGTCAAAGTCGTCCTTTAC+CGG | 0.288385 | 2_4:+61656147 | None:intergenic |
| CAGCGAAATCCAATGGATTT+AGG | 0.362932 | 2_4:-61655945 | Msa0340280:CDS |
| TGTTGTGATATATGAGATAA+TGG | 0.418864 | 2_4:+61657549 | None:intergenic |
| ATGGGTAGAGGTAGAGGAAA+GGG | 0.421104 | 2_4:-61656261 | Msa0340280:intron |
| GATTCAGCTGAGGAAGAAAA+TGG | 0.422625 | 2_4:-61655997 | Msa0340280:CDS |
| TCCGTTATGCCTAAATCCAT+TGG | 0.436331 | 2_4:+61655936 | None:intergenic |
| CAGCAGAACTTGCAAGGAAA+AGG | 0.444441 | 2_4:-61656050 | Msa0340280:CDS |
| AAGAGGGAGACCACAGAAAC+CGG | 0.451752 | 2_4:-61656166 | Msa0340280:CDS |
| GACAGTGAGAATGTTAAGAA+TGG | 0.453819 | 2_4:-61656105 | Msa0340280:CDS |
| CTTGCAAGTTCTGCTGCTGT+AGG | 0.470856 | 2_4:+61656057 | None:intergenic |
| CTCCACTTACAGTGTCGTCT+TGG | 0.474047 | 2_4:+61656217 | None:intergenic |
| CCTCGTAGAGCTGCTGAAGC+TGG | 0.484805 | 2_4:-61655895 | Msa0340280:CDS |
| GTTCCAATACAGAAGAAAAG+AGG | 0.492864 | 2_4:-61656183 | Msa0340280:CDS |
| CTGACTCCTCTGTGCTTGAT+CGG | 0.502660 | 2_4:+61655965 | None:intergenic |
| ATATATGAGATAATGGAATC+TGG | 0.508729 | 2_4:+61657556 | None:intergenic |
| TCCAATGGATTTAGGCATAA+CGG | 0.518583 | 2_4:-61655937 | Msa0340280:CDS |
| AACCAAGACGACACTGTAAG+TGG | 0.527625 | 2_4:-61656219 | Msa0340280:CDS |
| TGTAAGTGGAGAAGATGAAA+AGG | 0.533937 | 2_4:-61656205 | Msa0340280:CDS |
| TCGTCCTTTACCGGTTTCTG+TGG | 0.538924 | 2_4:+61656156 | None:intergenic |
| GAGGAGTCAGCGAAATCCAA+TGG | 0.541722 | 2_4:-61655952 | Msa0340280:CDS |
| TTCCAATACAGAAGAAAAGA+GGG | 0.543516 | 2_4:-61656182 | Msa0340280:CDS |
| CATGGGTAGAGGTAGAGGAA+AGG | 0.551133 | 2_4:-61656262 | Msa0340280:intron |
| GAAAAGGAAAAGAAACTCAC+AGG | 0.566451 | 2_4:-61656034 | Msa0340280:CDS |
| GCTGAGGAAGAAAATGGCGT+TGG | 0.572860 | 2_4:-61655991 | Msa0340280:CDS |
| GAGACCACAGAAACCGGTAA+AGG | 0.577992 | 2_4:-61656160 | Msa0340280:CDS |
| CTACAGCAGCAGAACTTGCA+AGG | 0.583011 | 2_4:-61656056 | Msa0340280:CDS |
| AGAGAAGTTAGATTCAGCTG+AGG | 0.635071 | 2_4:-61656007 | Msa0340280:CDS |
| CCAGCTTCAGCAGCTCTACG+AGG | 0.704470 | 2_4:+61655895 | None:intergenic |
| TGGAAGCCGATCAAGCACAG+AGG | 0.757729 | 2_4:-61655971 | Msa0340280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAGGTAAAAATATA+AGG | + | chr2_4:61656153-61656172 | None:intergenic | 10.0% |
| !!! | TAAATTTTTATGGATTTAAT+TGG | + | chr2_4:61657486-61657505 | None:intergenic | 10.0% |
| !! | TAAATCCATAAAAATTTATA+CGG | - | chr2_4:61657488-61657507 | Msa0340280:intron | 10.0% |
| !!! | TTTTTATTTATTTCCTTTTT+AGG | + | chr2_4:61657833-61657852 | None:intergenic | 10.0% |
| !! | AATAAATATATAATATAGCT+TGG | - | chr2_4:61657855-61657874 | Msa0340280:intron | 10.0% |
| !! | ATTATAAATTTAGTTGAATT+TGG | - | chr2_4:61658328-61658347 | Msa0340280:intron | 10.0% |
| !!! | AAATAAAAAATACTTTGTTT+TGG | - | chr2_4:61658642-61658661 | Msa0340280:intron | 10.0% |
| !! | TGTAAAAAAAAACATCAATT+TGG | - | chr2_4:61655949-61655968 | Msa0340280:CDS | 15.0% |
| !!! | TTTTGAACAACATTTAAAAA+AGG | + | chr2_4:61656166-61656185 | None:intergenic | 15.0% |
| !! | AAATTATAGGAATAATTGTA+TGG | + | chr2_4:61656880-61656899 | None:intergenic | 15.0% |
| !! | TACAGAAATCATTAAATTAT+AGG | + | chr2_4:61656893-61656912 | None:intergenic | 15.0% |
| !! | AAATTATAGGAATAATTGTA+TGG | + | chr2_4:61656880-61656899 | None:intergenic | 15.0% |
| !! | TTAAGGAATCATTAAATTAT+AGG | + | chr2_4:61656933-61656952 | None:intergenic | 15.0% |
| !! | AAGAAAATTAAATTGTGAAA+GGG | + | chr2_4:61657254-61657273 | None:intergenic | 15.0% |
| !!! | TGCTAATTTTTTTTTTACAA+AGG | + | chr2_4:61657346-61657365 | None:intergenic | 15.0% |
| !! | AATATATAAAAAAAACGTCT+AGG | + | chr2_4:61657588-61657607 | None:intergenic | 15.0% |
| !! | ATACAAATATAATCCTAAAA+AGG | - | chr2_4:61657817-61657836 | Msa0340280:intron | 15.0% |
| !! | TGAATTTGGATTATAATATA+AGG | - | chr2_4:61658342-61658361 | Msa0340280:intron | 15.0% |
| !! | GAATTTGGATTATAATATAA+GGG | - | chr2_4:61658343-61658362 | Msa0340280:intron | 15.0% |
| !! | ACAAAACAAAATAAAACAAT+AGG | + | chr2_4:61658371-61658390 | None:intergenic | 15.0% |
| !!! | TTTTATTTTATGCTTTATTC+TGG | - | chr2_4:61658459-61658478 | Msa0340280:intron | 15.0% |
| !!! | TATTTTTTCTGTATCAATTT+TGG | - | chr2_4:61658553-61658572 | Msa0340280:intron | 15.0% |
| !!! | AAGTTTAATTCTTTTTTCTA+TGG | - | chr2_4:61658608-61658627 | Msa0340280:intron | 15.0% |
| !! | TTCTGTATAAAAATTGAATT+AGG | - | chr2_4:61658774-61658793 | Msa0340280:intron | 15.0% |
| !! | TCTGTATAAAAATTGAATTA+GGG | - | chr2_4:61658775-61658794 | Msa0340280:intron | 15.0% |
| !!! | CTAAATTTATCATTTGTTTT+TGG | - | chr2_4:61658948-61658967 | Msa0340280:intron | 15.0% |
| !!! | GAATTTCTTTTTAGAGATTA+AGG | + | chr2_4:61656022-61656041 | None:intergenic | 20.0% |
| !!! | ATTCTTAATAACCTTTTTCT+AGG | - | chr2_4:61656038-61656057 | Msa0340280:CDS | 20.0% |
| !!! | TAGTTTTTTTTCCTAGAAAA+AGG | + | chr2_4:61656052-61656071 | None:intergenic | 20.0% |
| !!! | TTTTAAAAGTTGTCTTAAGA+TGG | + | chr2_4:61656113-61656132 | None:intergenic | 20.0% |
| !!! | TTCTAAAACATCAAAAGTTT+TGG | + | chr2_4:61656693-61656712 | None:intergenic | 20.0% |
| !! | AATAATAAATGCAATTTGTG+TGG | - | chr2_4:61656777-61656796 | Msa0340280:intron | 20.0% |
| !!! | TTTTGAGAAAAAAGAAATCA+AGG | - | chr2_4:61656828-61656847 | Msa0340280:intron | 20.0% |
| !! | GAAGAAAATTAAATTGTGAA+AGG | + | chr2_4:61657255-61657274 | None:intergenic | 20.0% |
| !!! | TCATTTTTATATACTCATGT+TGG | + | chr2_4:61657652-61657671 | None:intergenic | 20.0% |
| !! | ATGAATAGATATTTGTCTAT+TGG | + | chr2_4:61657915-61657934 | None:intergenic | 20.0% |
| !!! | CTTTAGCTTAAACTTTAAAA+GGG | + | chr2_4:61658591-61658610 | None:intergenic | 20.0% |
| !!! | ACTTTAGCTTAAACTTTAAA+AGG | + | chr2_4:61658592-61658611 | None:intergenic | 20.0% |
| !!! | ATAGTAATTTTTCTCAGTTA+GGG | - | chr2_4:61658798-61658817 | Msa0340280:intron | 20.0% |
| !!! | ATTTTCTAATACTAAAGAAG+AGG | - | chr2_4:61658880-61658899 | Msa0340280:intron | 20.0% |
| !!! | ACTTTATTTAATACAAAGTG+TGG | - | chr2_4:61659133-61659152 | Msa0340280:intron | 20.0% |
| !! | TAGCATAAATATAAACAAAC+TGG | + | chr2_4:61659382-61659401 | None:intergenic | 20.0% |
| !!! | TAATTTAGAATATCTGTCTA+CGG | - | chr2_4:61659400-61659419 | Msa0340280:intron | 20.0% |
| !!! | CCATGATATTTTAAAATATC+CGG | + | chr2_4:61659517-61659536 | None:intergenic | 20.0% |
| !!! | CGGATATTTTAAAATATCAT+GGG | - | chr2_4:61659515-61659534 | Msa0340280:intron | 20.0% |
| ! | AAAAACTGAGAAATGGTATT+TGG | + | chr2_4:61656199-61656218 | None:intergenic | 25.0% |
| !!! | ATACTACATTTGCTTTTCTA+TGG | + | chr2_4:61656423-61656442 | None:intergenic | 25.0% |
| !!! | TCCATCATAAAAGTATTCAA+AGG | - | chr2_4:61656559-61656578 | Msa0340280:intron | 25.0% |
| !! | TCCTTTGAATACTTTTATGA+TGG | + | chr2_4:61656563-61656582 | None:intergenic | 25.0% |
| !!! | ATCATAAAAGTATTCAAAGG+AGG | - | chr2_4:61656562-61656581 | Msa0340280:intron | 25.0% |
| ! | ATCAAAAGAAAAGGAATTGA+GGG | + | chr2_4:61656648-61656667 | None:intergenic | 25.0% |
| !!! | CTCTAAAACATCAAAAGAAA+AGG | + | chr2_4:61656657-61656676 | None:intergenic | 25.0% |
| !!! | TTTTTCAACAAGGGTAAAAT+TGG | + | chr2_4:61656733-61656752 | None:intergenic | 25.0% |
| !! | GAAAAACACACTTTGAAAAT+TGG | - | chr2_4:61656747-61656766 | Msa0340280:intron | 25.0% |
| ! | AGGTGATTGTACAAATATTA+AGG | + | chr2_4:61656950-61656969 | None:intergenic | 25.0% |
| ! | AAAAAATTAGCATGCATCAT+TGG | - | chr2_4:61657354-61657373 | Msa0340280:intron | 25.0% |
| !! | CCAATCCGTATAAATTTTTA+TGG | + | chr2_4:61657496-61657515 | None:intergenic | 25.0% |
| ! | CCATAAAAATTTATACGGAT+TGG | - | chr2_4:61657493-61657512 | Msa0340280:intron | 25.0% |
| !!! | AATTTATACGGATTGGATTT+TGG | - | chr2_4:61657500-61657519 | Msa0340280:intron | 25.0% |
| ! | GTAATTACTTCTATTAGTGT+AGG | + | chr2_4:61657683-61657702 | None:intergenic | 25.0% |
| ! | AAAAAAACAGAATACCTAGA+TGG | + | chr2_4:61658056-61658075 | None:intergenic | 25.0% |
| !!! | ATATATGAGATAATGGAATC+TGG | + | chr2_4:61658241-61658260 | None:intergenic | 25.0% |
| ! | TGTTGTGATATATGAGATAA+TGG | + | chr2_4:61658248-61658267 | None:intergenic | 25.0% |
| !!! | CTCAATGTTTTTGGATTTAT+GGG | - | chr2_4:61658392-61658411 | Msa0340280:intron | 25.0% |
| ! | GAAAAAAATGCAGAGTTTAT+TGG | - | chr2_4:61658694-61658713 | Msa0340280:intron | 25.0% |
| !! | GATAGTAATTTTTCTCAGTT+AGG | - | chr2_4:61658797-61658816 | Msa0340280:intron | 25.0% |
| ! | ACGTTATTTAATACAAAGTG+TGG | - | chr2_4:61659230-61659249 | Msa0340280:intron | 25.0% |
| !!! | CCGGATATTTTAAAATATCA+TGG | - | chr2_4:61659514-61659533 | Msa0340280:intron | 25.0% |
| !!! | TTTTAAAATATCATGGGTAG+AGG | - | chr2_4:61659521-61659540 | Msa0340280:intron | 25.0% |
| GTGTAAGAAAAACTGAGAAA+TGG | + | chr2_4:61656206-61656225 | None:intergenic | 30.0% | |
| TAGCATGACTCAAATATGAT+AGG | + | chr2_4:61656237-61656256 | None:intergenic | 30.0% | |
| GCTTTCTTTAACTATTGTCT+TGG | + | chr2_4:61656269-61656288 | None:intergenic | 30.0% | |
| ATCTAATCTACTAGTAGTAC+TGG | - | chr2_4:61656601-61656620 | Msa0340280:intron | 30.0% | |
| CATCAAAAGAAAAGGAATTG+AGG | + | chr2_4:61656649-61656668 | None:intergenic | 30.0% | |
| !! | CAAAGTGTGTTTTTCAACAA+GGG | + | chr2_4:61656742-61656761 | None:intergenic | 30.0% |
| !! | TCAAAGTGTGTTTTTCAACA+AGG | + | chr2_4:61656743-61656762 | None:intergenic | 30.0% |
| GTGGTGAGTTTCAATAATTA+AGG | - | chr2_4:61656796-61656815 | Msa0340280:intron | 30.0% | |
| AAGAAATCAAGGAGTAAGTA+AGG | - | chr2_4:61656839-61656858 | Msa0340280:intron | 30.0% | |
| AGAAATCAAGGAGTAAGTAA+GGG | - | chr2_4:61656840-61656859 | Msa0340280:intron | 30.0% | |
| ACCTAAAACCTCAAAAGAAA+AGG | - | chr2_4:61656966-61656985 | Msa0340280:intron | 30.0% | |
| !!! | TCCTTTTCTTTTGAGGTTTT+AGG | + | chr2_4:61656970-61656989 | None:intergenic | 30.0% |
| CTCAAAAGAAAAGGAATGAA+GGG | - | chr2_4:61656975-61656994 | Msa0340280:intron | 30.0% | |
| GAAAGGGTAGTTTAGTAAAT+GGG | + | chr2_4:61657238-61657257 | None:intergenic | 30.0% | |
| TGAAAGGGTAGTTTAGTAAA+TGG | + | chr2_4:61657239-61657258 | None:intergenic | 30.0% | |
| AAGAGATATCCTTAAGCTAA+TGG | - | chr2_4:61657723-61657742 | Msa0340280:intron | 30.0% | |
| !! | CAACTTTTACCATTAGCTTA+AGG | + | chr2_4:61657735-61657754 | None:intergenic | 30.0% |
| ! | TCAATAAAAAGTTGATCTGC+CGG | + | chr2_4:61657772-61657791 | None:intergenic | 30.0% |
| ! | TGTGGTTTGTAAGAAACAAA+GGG | + | chr2_4:61657993-61658012 | None:intergenic | 30.0% |
| !!! | TGTTTTTGTTGTTTCAAGTG+TGG | + | chr2_4:61658011-61658030 | None:intergenic | 30.0% |
| TTATTGTTTCATCACCATCT+AGG | - | chr2_4:61658039-61658058 | Msa0340280:intron | 30.0% | |
| ! | TGTTTTGTCCTCAATGTTTT+TGG | - | chr2_4:61658383-61658402 | Msa0340280:intron | 30.0% |
| CCATAAATCCAAAAACATTG+AGG | + | chr2_4:61658394-61658413 | None:intergenic | 30.0% | |
| !!! | CCTCAATGTTTTTGGATTTA+TGG | - | chr2_4:61658391-61658410 | Msa0340280:intron | 30.0% |
| ! | CTTTAAAAGGGTAAGCAAAT+AGG | + | chr2_4:61658579-61658598 | None:intergenic | 30.0% |
| AGAGTTTATTGGTGTATTCT+AGG | - | chr2_4:61658705-61658724 | Msa0340280:intron | 30.0% | |
| GCTATGAATGTACTTGTTTA+TGG | + | chr2_4:61658833-61658852 | None:intergenic | 30.0% | |
| AACAAGTACATTCATAGCTA+TGG | - | chr2_4:61658835-61658854 | Msa0340280:intron | 30.0% | |
| CTATATTATAGCACCACTAT+TGG | + | chr2_4:61658983-61659002 | None:intergenic | 30.0% | |
| !! | ATAGTGGTGCTATAATATAG+CGG | - | chr2_4:61658983-61659002 | Msa0340280:intron | 30.0% |
| GATCTATAACTCTACTTTGT+GGG | - | chr2_4:61659315-61659334 | Msa0340280:intron | 30.0% | |
| ATCTATAACTCTACTTTGTG+GGG | - | chr2_4:61659316-61659335 | Msa0340280:intron | 30.0% | |
| TTCCAATACAGAAGAAAAGA+GGG | - | chr2_4:61659612-61659631 | Msa0340280:intron | 30.0% | |
| !! | AATCTACTAGTAGTACTGGT+AGG | - | chr2_4:61656605-61656624 | Msa0340280:intron | 35.0% |
| AAAGAAAAGGAATTGAGGGA+TGG | + | chr2_4:61656644-61656663 | None:intergenic | 35.0% | |
| ! | CCTTCATTCCTTTTCTTTTG+AGG | + | chr2_4:61656977-61656996 | None:intergenic | 35.0% |
| CCTCAAAAGAAAAGGAATGA+AGG | - | chr2_4:61656974-61656993 | Msa0340280:intron | 35.0% | |
| AGTGTGTTTGAGTGTAATGT+TGG | + | chr2_4:61657129-61657148 | None:intergenic | 35.0% | |
| ACGGTTTCTTCTAACATATC+AGG | - | chr2_4:61657195-61657214 | Msa0340280:intron | 35.0% | |
| GTAGTTTAGTAAATGGGATG+TGG | + | chr2_4:61657232-61657251 | None:intergenic | 35.0% | |
| ! | GTGTGGTTTGTAAGAAACAA+AGG | + | chr2_4:61657994-61658013 | None:intergenic | 35.0% |
| CAACAACTTGTCTTCATTTC+TGG | - | chr2_4:61658269-61658288 | Msa0340280:intron | 35.0% | |
| GTTTATTGGTGTATTCTAGG+TGG | - | chr2_4:61658708-61658727 | Msa0340280:intron | 35.0% | |
| ! | AAGAAGTGTGCAAGTATGAT+TGG | - | chr2_4:61658732-61658751 | Msa0340280:intron | 35.0% |
| ! | AGAAGTGTGCAAGTATGATT+GGG | - | chr2_4:61658733-61658752 | Msa0340280:intron | 35.0% |
| TACAGCAAAACACTCACAAT+TGG | + | chr2_4:61659017-61659036 | None:intergenic | 35.0% | |
| TTGTCAAATAGCTGCTATTG+CGG | - | chr2_4:61659056-61659075 | Msa0340280:intron | 35.0% | |
| TAATACAAAGTGTGGTCAAG+TGG | - | chr2_4:61659141-61659160 | Msa0340280:intron | 35.0% | |
| GTTCAGATTATGCTATGCTA+CGG | + | chr2_4:61659278-61659297 | None:intergenic | 35.0% | |
| GAGTTATAGATCGTGGAAAA+TGG | + | chr2_4:61659307-61659326 | None:intergenic | 35.0% | |
| CAAAGTAGAGTTATAGATCG+TGG | + | chr2_4:61659314-61659333 | None:intergenic | 35.0% | |
| CGATCTATAACTCTACTTTG+TGG | - | chr2_4:61659314-61659333 | Msa0340280:intron | 35.0% | |
| ATTAGTTCCATCAAGAGAGA+CGG | + | chr2_4:61659359-61659378 | None:intergenic | 35.0% | |
| TGTAAGTGGAGAAGATGAAA+AGG | - | chr2_4:61659589-61659608 | Msa0340280:intron | 35.0% | |
| GTTCCAATACAGAAGAAAAG+AGG | - | chr2_4:61659611-61659630 | Msa0340280:intron | 35.0% | |
| GACAGTGAGAATGTTAAGAA+TGG | - | chr2_4:61659689-61659708 | Msa0340280:intron | 35.0% | |
| GAAAAGGAAAAGAAACTCAC+AGG | - | chr2_4:61659760-61659779 | Msa0340280:intron | 35.0% | |
| ! | TCCAATGGATTTAGGCATAA+CGG | - | chr2_4:61659857-61659876 | Msa0340280:intron | 35.0% |
| !! | TAGTACTGGTAGGAGTGTAT+AGG | - | chr2_4:61656615-61656634 | Msa0340280:intron | 40.0% |
| AAAGGAATGAAGGGAGTAGT+AGG | - | chr2_4:61656984-61657003 | Msa0340280:intron | 40.0% | |
| AATGAAGGGAGTAGTAGGTT+AGG | - | chr2_4:61656989-61657008 | Msa0340280:intron | 40.0% | |
| ATGTTGGTGTGTTTACGTGT+GGG | + | chr2_4:61657113-61657132 | None:intergenic | 40.0% | |
| AATGTTGGTGTGTTTACGTG+TGG | + | chr2_4:61657114-61657133 | None:intergenic | 40.0% | |
| ACGCGTAACGGTTAAATGTT+GGG | + | chr2_4:61657161-61657180 | None:intergenic | 40.0% | |
| TACGCGTAACGGTTAAATGT+TGG | + | chr2_4:61657162-61657181 | None:intergenic | 40.0% | |
| ACAGCTACTTATACGCGTAA+CGG | + | chr2_4:61657173-61657192 | None:intergenic | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+TGG | + | chr2_4:61657620-61657639 | None:intergenic | 40.0% |
| ! | TAAAAAGTTGATCTGCCGGT+AGG | + | chr2_4:61657768-61657787 | None:intergenic | 40.0% |
| AATGAAACAGAGGCGAAGTA+GGG | + | chr2_4:61657967-61657986 | None:intergenic | 40.0% | |
| AAATGAAACAGAGGCGAAGT+AGG | + | chr2_4:61657968-61657987 | None:intergenic | 40.0% | |
| CAAAGGGCAAAATGAAACAG+AGG | + | chr2_4:61657977-61657996 | None:intergenic | 40.0% | |
| !! | TTGGTAGCTTTGTCCAATAG+TGG | - | chr2_4:61658967-61658986 | Msa0340280:intron | 40.0% |
| ATATCTGTCTACGGTCTACA+CGG | - | chr2_4:61659409-61659428 | Msa0340280:intron | 40.0% | |
| AATATCATGGGTAGAGGTAG+AGG | - | chr2_4:61659527-61659546 | Msa0340280:intron | 40.0% | |
| ! | CTCCCTCTTTTCTTCTGTAT+TGG | + | chr2_4:61659617-61659636 | None:intergenic | 40.0% |
| AGAGAAGTTAGATTCAGCTG+AGG | - | chr2_4:61659787-61659806 | Msa0340280:intron | 40.0% | |
| GATTCAGCTGAGGAAGAAAA+TGG | - | chr2_4:61659797-61659816 | Msa0340280:intron | 40.0% | |
| ! | CAGCGAAATCCAATGGATTT+AGG | - | chr2_4:61659849-61659868 | Msa0340280:intron | 40.0% |
| TCCGTTATGCCTAAATCCAT+TGG | + | chr2_4:61659861-61659880 | None:intergenic | 40.0% | |
| AAGGGAGTAGTAGGTTAGGT+TGG | - | chr2_4:61656993-61657012 | Msa0340280:intron | 45.0% | |
| ! | AGTGTTGAACTCAAGCACCT+AGG | - | chr2_4:61657021-61657040 | Msa0340280:intron | 45.0% |
| AACTCAAGCACCTAGGTTTC+CGG | - | chr2_4:61657028-61657047 | Msa0340280:intron | 45.0% | |
| ! | GCAATCTGCATCTAAGATCC+AGG | - | chr2_4:61657086-61657105 | Msa0340280:intron | 45.0% |
| TGTTGGTGTGTTTACGTGTG+GGG | + | chr2_4:61657112-61657131 | None:intergenic | 45.0% | |
| CGCGTATAAGTAGCTGTTCA+CGG | - | chr2_4:61657176-61657195 | Msa0340280:intron | 45.0% | |
| CAAGCTCAACAAATGCCAAC+AGG | - | chr2_4:61657531-61657550 | Msa0340280:CDS | 45.0% | |
| CCACTAAACAATGCTCCTGT+TGG | + | chr2_4:61657549-61657568 | None:intergenic | 45.0% | |
| !! | CCAACAGGAGCATTGTTTAG+TGG | - | chr2_4:61657546-61657565 | Msa0340280:CDS | 45.0% |
| ! | GAGCATTGTTTAGTGGTGCT+AGG | - | chr2_4:61657553-61657572 | Msa0340280:CDS | 45.0% |
| CCTTGTGAGCTTAACTCAGT+TGG | + | chr2_4:61657625-61657644 | None:intergenic | 45.0% | |
| CCAACTGAGTTAAGCTCACA+AGG | - | chr2_4:61657622-61657641 | Msa0340280:intron | 45.0% | |
| AGTTGAATCCACGATCCTAC+CGG | - | chr2_4:61657750-61657769 | Msa0340280:intron | 45.0% | |
| GTGTGCAAGTATGATTGGGA+AGG | - | chr2_4:61658737-61658756 | Msa0340280:intron | 45.0% | |
| TCTGCTGCGCTACAATGTTA+CGG | + | chr2_4:61659181-61659200 | None:intergenic | 45.0% | |
| ATGCAAACAAGGATCTCTGC+AGG | + | chr2_4:61659481-61659500 | None:intergenic | 45.0% | |
| AAGCTGCGTTCATGCAAACA+AGG | + | chr2_4:61659492-61659511 | None:intergenic | 45.0% | |
| ! | TTGCATGAACGCAGCTTTTC+CGG | - | chr2_4:61659495-61659514 | Msa0340280:intron | 45.0% |
| ATGGGTAGAGGTAGAGGAAA+GGG | - | chr2_4:61659533-61659552 | Msa0340280:intron | 45.0% | |
| AACCAAGACGACACTGTAAG+TGG | - | chr2_4:61659575-61659594 | Msa0340280:intron | 45.0% | |
| TCGTCAAAGTCGTCCTTTAC+CGG | + | chr2_4:61659650-61659669 | None:intergenic | 45.0% | |
| CAGCAGAACTTGCAAGGAAA+AGG | - | chr2_4:61659744-61659763 | Msa0340280:intron | 45.0% | |
| !!! | AAAAATATAGATTTAATTTA+GGG | + | chr2_4:61658540-61658559 | None:intergenic | 5.0% |
| !!! | AAAAAATATAGATTTAATTT+AGG | + | chr2_4:61658541-61658560 | None:intergenic | 5.0% |
| AAAACGTTAACGAGTGCCCC+GGG | + | chr2_4:61656540-61656559 | None:intergenic | 50.0% | |
| GAAAACGTTAACGAGTGCCC+CGG | + | chr2_4:61656541-61656560 | None:intergenic | 50.0% | |
| ACTCAAGCACCTAGGTTTCC+GGG | - | chr2_4:61657029-61657048 | Msa0340280:intron | 50.0% | |
| ! | GTTTCCGGGGTATCTCAGTT+AGG | - | chr2_4:61657043-61657062 | Msa0340280:intron | 50.0% |
| GTCTCCTAACTGAGATACCC+CGG | + | chr2_4:61657050-61657069 | None:intergenic | 50.0% | |
| GTGTGGTCAAGTAGCTGCTA+TGG | - | chr2_4:61659150-61659169 | Msa0340280:intron | 50.0% | |
| TGGTCAAGTAGCTGCTATGG+CGG | - | chr2_4:61659153-61659172 | Msa0340280:intron | 50.0% | |
| TACCTCTCCGTCTCTCTTGA+TGG | - | chr2_4:61659349-61659368 | Msa0340280:intron | 50.0% | |
| TTCCATCAAGAGAGACGGAG+AGG | + | chr2_4:61659354-61659373 | None:intergenic | 50.0% | |
| ACAAGGATCTCTGCAGGAGA+AGG | + | chr2_4:61659475-61659494 | None:intergenic | 50.0% | |
| CATGGGTAGAGGTAGAGGAA+AGG | - | chr2_4:61659532-61659551 | Msa0340280:intron | 50.0% | |
| CTCCACTTACAGTGTCGTCT+TGG | + | chr2_4:61659580-61659599 | None:intergenic | 50.0% | |
| AAGAGGGAGACCACAGAAAC+CGG | - | chr2_4:61659628-61659647 | Msa0340280:intron | 50.0% | |
| GAGACCACAGAAACCGGTAA+AGG | - | chr2_4:61659634-61659653 | Msa0340280:intron | 50.0% | |
| !! | TCGTCCTTTACCGGTTTCTG+TGG | + | chr2_4:61659641-61659660 | None:intergenic | 50.0% |
| CTTGCAAGTTCTGCTGCTGT+AGG | + | chr2_4:61659740-61659759 | None:intergenic | 50.0% | |
| CTACAGCAGCAGAACTTGCA+AGG | - | chr2_4:61659738-61659757 | Msa0340280:intron | 50.0% | |
| GCTGAGGAAGAAAATGGCGT+TGG | - | chr2_4:61659803-61659822 | Msa0340280:intron | 50.0% | |
| CTGACTCCTCTGTGCTTGAT+CGG | + | chr2_4:61659832-61659851 | None:intergenic | 50.0% | |
| GAGGAGTCAGCGAAATCCAA+TGG | - | chr2_4:61659842-61659861 | Msa0340280:intron | 50.0% | |
| AGCTTCCTTAACCAGTGCCC+CGG | - | chr2_4:61656519-61656538 | Msa0340280:intron | 55.0% | |
| AAACGTTAACGAGTGCCCCG+GGG | + | chr2_4:61656539-61656558 | None:intergenic | 55.0% | |
| CTCAAGCACCTAGGTTTCCG+GGG | - | chr2_4:61657030-61657049 | Msa0340280:intron | 55.0% | |
| CTGAGATACCCCGGAAACCT+AGG | + | chr2_4:61657041-61657060 | None:intergenic | 55.0% | |
| TTGATCTGCCGGTAGGATCG+TGG | + | chr2_4:61657761-61657780 | None:intergenic | 55.0% | |
| GTGTGGTCAAGTGGCTGCTA+TGG | - | chr2_4:61659247-61659266 | Msa0340280:intron | 55.0% | |
| TGGTCAAGTGGCTGCTATGG+CGG | - | chr2_4:61659250-61659269 | Msa0340280:intron | 55.0% | |
| TGGAAGCCGATCAAGCACAG+AGG | - | chr2_4:61659823-61659842 | Msa0340280:intron | 55.0% | |
| GCTTCCTTAACCAGTGCCCC+GGG | - | chr2_4:61656520-61656539 | Msa0340280:intron | 60.0% | |
| CTTCCTTAACCAGTGCCCCG+GGG | - | chr2_4:61656521-61656540 | Msa0340280:intron | 60.0% | |
| GTGTGTTTACGTGTGGGGCC+TGG | + | chr2_4:61657107-61657126 | None:intergenic | 60.0% | |
| CCAGCTTCAGCAGCTCTACG+AGG | + | chr2_4:61659902-61659921 | None:intergenic | 60.0% | |
| CCTCGTAGAGCTGCTGAAGC+TGG | - | chr2_4:61659899-61659918 | Msa0340280:intron | 60.0% | |
| !! | GTGCCCCGGGGCACTGGTTA+AGG | + | chr2_4:61656527-61656546 | None:intergenic | 70.0% |
| TAACGAGTGCCCCGGGGCAC+TGG | + | chr2_4:61656533-61656552 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 61655879 | 61659937 | 61655879 | ID=Msa0340280;Name=Msa0340280 |
| chr2_4 | mRNA | 61655879 | 61659937 | 61655879 | ID=Msa0340280-mRNA-1;Parent=Msa0340280;Name=Msa0340280-mRNA-1;_AED=0.27;_eAED=0.28;_QI=0|0|0.25|0.5|1|1|4|0|157 |
| chr2_4 | exon | 61659933 | 61659937 | 61659933 | ID=Msa0340280-mRNA-1:exon:19476;Parent=Msa0340280-mRNA-1 |
| chr2_4 | exon | 61657526 | 61657597 | 61657526 | ID=Msa0340280-mRNA-1:exon:19475;Parent=Msa0340280-mRNA-1 |
| chr2_4 | exon | 61657386 | 61657391 | 61657386 | ID=Msa0340280-mRNA-1:exon:19474;Parent=Msa0340280-mRNA-1 |
| chr2_4 | exon | 61655879 | 61656269 | 61655879 | ID=Msa0340280-mRNA-1:exon:19473;Parent=Msa0340280-mRNA-1 |
| chr2_4 | CDS | 61659933 | 61659937 | 61659933 | ID=Msa0340280-mRNA-1:cds;Parent=Msa0340280-mRNA-1 |
| chr2_4 | CDS | 61657526 | 61657597 | 61657526 | ID=Msa0340280-mRNA-1:cds;Parent=Msa0340280-mRNA-1 |
| chr2_4 | CDS | 61657386 | 61657391 | 61657386 | ID=Msa0340280-mRNA-1:cds;Parent=Msa0340280-mRNA-1 |
| chr2_4 | CDS | 61655879 | 61656269 | 61655879 | ID=Msa0340280-mRNA-1:cds;Parent=Msa0340280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
