Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340820 | XP_003597836.2 | 96.674 | 451 | 7 | 1 | 1 | 451 | 1 | 443 | 0.0 | 894 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340820 | sp|Q4VA72|BRCC3_XENTR | 46.032 | 189 | 85 | 4 | 1 | 184 | 1 | 177 | 9.41e-49 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0305900 | Msa0340820 | 0.832177 | 1.096702e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340820 | MtrunA17_Chr2g0332611 | 98.077 | 364 | 6 | 1 | 89 | 451 | 1 | 364 | 0.0 | 733 |
| Msa0340820 | MtrunA17_Chr2g0332601 | 97.674 | 86 | 2 | 0 | 1 | 86 | 1 | 86 | 7.38e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340820 | AT1G80210.1 | 66.667 | 411 | 117 | 7 | 1 | 407 | 1 | 395 | 0.0 | 539 |
| Msa0340820 | AT1G80210.2 | 67.885 | 383 | 105 | 6 | 1 | 379 | 1 | 369 | 0.0 | 521 |
| Msa0340820 | AT3G06820.3 | 67.581 | 401 | 111 | 6 | 1 | 395 | 1 | 388 | 0.0 | 513 |
| Msa0340820 | AT3G06820.2 | 67.581 | 401 | 111 | 6 | 1 | 395 | 1 | 388 | 0.0 | 513 |
| Msa0340820 | AT3G06820.1 | 65.064 | 312 | 99 | 4 | 89 | 395 | 1 | 307 | 5.42e-132 | 384 |
Find 120 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTGATTCTGGGTTTAT+TGG | 0.115541 | 2_4:+62234994 | Msa0340820:CDS |
| CGATGCTCAGTGAAATATTT+TGG | 0.127476 | 2_4:+62237797 | Msa0340820:three_prime_UTR |
| ATGTATCAACTTCTTGATTC+TGG | 0.141321 | 2_4:+62234985 | Msa0340820:CDS |
| CTATTAATCTTTAACCTAAT+TGG | 0.182784 | 2_4:-62232482 | None:intergenic |
| CACTGAAACCGAAGAGATTA+TGG | 0.203215 | 2_4:+62232738 | Msa0340820:CDS |
| TTCTTGATTCTGGGTTTATT+GGG | 0.251629 | 2_4:+62234995 | Msa0340820:CDS |
| ACACCACACTTCGACTTATC+AGG | 0.275809 | 2_4:+62236893 | Msa0340820:CDS |
| ATTTGTTTAATTAGCCAATT+AGG | 0.275927 | 2_4:+62232468 | Msa0340820:five_prime_UTR |
| TTGTTCCTCCAAGAATAAAA+TGG | 0.292010 | 2_4:-62237865 | None:intergenic |
| AGCTATGCACCGCTCAAATA+TGG | 0.296293 | 2_4:+62235866 | Msa0340820:CDS |
| AAAATTAAATCAGGACTATA+CGG | 0.302565 | 2_4:+62237934 | Msa0340820:three_prime_UTR |
| GAGATTATGGGTCTTCTTCT+TGG | 0.309605 | 2_4:+62232751 | Msa0340820:CDS |
| GAATCACCAGTGTCCTGCTC+TGG | 0.330705 | 2_4:-62235314 | None:intergenic |
| TCTTGAAGTGCGTTGATTGC+AGG | 0.331174 | 2_4:-62237043 | None:intergenic |
| AGTTATCTCAATGACATTCA+TGG | 0.337538 | 2_4:+62237893 | Msa0340820:three_prime_UTR |
| AATAACACAGAACAAGAAAA+AGG | 0.353636 | 2_4:-62233033 | None:intergenic |
| GGAGTGTGACTGCATTGATA+TGG | 0.369051 | 2_4:+62232916 | Msa0340820:CDS |
| TGTATCAACTTCTTGATTCT+GGG | 0.370430 | 2_4:+62234986 | Msa0340820:CDS |
| GACTAAGAGAGAATGAAATT+CGG | 0.373072 | 2_4:+62237068 | Msa0340820:CDS |
| GAAGCAGCAGCCAACTGTTC+AGG | 0.373869 | 2_4:-62232993 | None:intergenic |
| TGAAAATGTCCGAAGAAGTT+TGG | 0.381529 | 2_4:+62232689 | Msa0340820:CDS |
| AATGCCGATGCCAACTATCT+AGG | 0.397041 | 2_4:+62235753 | Msa0340820:CDS |
| AGTTATGTCAAAATTAAATC+AGG | 0.397209 | 2_4:+62237925 | Msa0340820:three_prime_UTR |
| AGAGGGAGTGAAGCAAGTTT+AGG | 0.400423 | 2_4:+62237490 | Msa0340820:CDS |
| CGTCGATCAGACCTTGTTTG+AGG | 0.408498 | 2_4:-62232948 | None:intergenic |
| GAGTGAAGAAGCCAAGAGTC+TGG | 0.408537 | 2_4:+62237447 | Msa0340820:CDS |
| ACTGAAACCGAAGAGATTAT+GGG | 0.413726 | 2_4:+62232739 | Msa0340820:CDS |
| AGATGAACTTCCTCGATGTA+TGG | 0.414680 | 2_4:-62237554 | None:intergenic |
| ACTAAGAGAGAATGAAATTC+GGG | 0.428257 | 2_4:+62237069 | Msa0340820:CDS |
| TGATGAATCTATATGAATAA+TGG | 0.429530 | 2_4:-62235237 | None:intergenic |
| GAGAATTTAACAACAAGATC+TGG | 0.435278 | 2_4:+62235272 | Msa0340820:CDS |
| CACAGAATGACTGTTACAAC+TGG | 0.444669 | 2_4:+62233619 | Msa0340820:CDS |
| GCATGTTAACCAAACTTCTT+CGG | 0.444704 | 2_4:-62232698 | None:intergenic |
| CCTGGTAGCCGGAGCAGAAA+AGG | 0.449380 | 2_4:+62237637 | Msa0340820:CDS |
| TCTTCTTCTTGGCGATATCC+AGG | 0.452533 | 2_4:+62232762 | Msa0340820:CDS |
| AACAAGATCTGGTTACTTCA+AGG | 0.457060 | 2_4:+62235283 | Msa0340820:CDS |
| TGCCTCCGCCTCCAGACTCT+TGG | 0.459710 | 2_4:-62237458 | None:intergenic |
| AGCCAAGAGTCTGGAGGCGG+AGG | 0.461420 | 2_4:+62237456 | Msa0340820:CDS |
| GGAAGAACAACGAGGGTGAT+AGG | 0.461704 | 2_4:+62233640 | Msa0340820:CDS |
| AAGAAGACCCATAATCTCTT+CGG | 0.464604 | 2_4:-62232746 | None:intergenic |
| GAGAAGTGCTGGTGCTAGTA+AGG | 0.473131 | 2_4:+62235337 | Msa0340820:CDS |
| TAAACTTGCTTCACTCCCTC+TGG | 0.474010 | 2_4:-62237488 | None:intergenic |
| TATGGGAGATGCAACTTGAC+GGG | 0.478253 | 2_4:-62237536 | None:intergenic |
| ATGCCGATGCCAACTATCTA+GGG | 0.486571 | 2_4:+62235754 | Msa0340820:CDS |
| TCTGCTTTCCATCAGATGAC+TGG | 0.487274 | 2_4:-62235169 | None:intergenic |
| GAGTGTGACTGCATTGATAT+GGG | 0.495477 | 2_4:+62232917 | Msa0340820:CDS |
| GGTTGAAGAAGGAGGCGAGA+GGG | 0.499327 | 2_4:+62232555 | Msa0340820:five_prime_UTR |
| CATACTTTCTGACATATCCA+TGG | 0.509731 | 2_4:-62235838 | None:intergenic |
| CAGAGTTCAAGTGAATCTCT+TGG | 0.511986 | 2_4:+62237595 | Msa0340820:CDS |
| GTTAAATTCTCTGAGGAACT+TGG | 0.513339 | 2_4:-62235260 | None:intergenic |
| ATTGCTTTCCAGTCATCTGA+TGG | 0.523557 | 2_4:+62235161 | Msa0340820:CDS |
| CTCTGCGAGTTTCTTTGACG+AGG | 0.523918 | 2_4:-62237577 | None:intergenic |
| AATCACCAGTGTCCTGCTCT+GGG | 0.524238 | 2_4:-62235313 | None:intergenic |
| CATAATCTCTTCGGTTTCAG+TGG | 0.524734 | 2_4:-62232737 | None:intergenic |
| TTTACAGGAGACAGAGGTAT+GGG | 0.525737 | 2_4:-62235206 | None:intergenic |
| GATGAACTTCCTCGATGTAT+GGG | 0.533300 | 2_4:-62237553 | None:intergenic |
| TAGACAGTTGAGGTTGAAGA+AGG | 0.533784 | 2_4:+62232544 | Msa0340820:five_prime_UTR |
| ATGATGATAGCGGCGAATCA+AGG | 0.533813 | 2_4:-62236628 | None:intergenic |
| TAACAATGTTGAATTCTCGT+TGG | 0.537203 | 2_4:+62237661 | Msa0340820:exon |
| TACAATTGTGAGTGGTGACT+TGG | 0.540547 | 2_4:+62237842 | Msa0340820:three_prime_UTR |
| ATCTCAATGACATTCATGGT+TGG | 0.540600 | 2_4:+62237897 | Msa0340820:three_prime_UTR |
| GTATGGGAGATGCAACTTGA+CGG | 0.541009 | 2_4:-62237537 | None:intergenic |
| ACGGGGAGAAGCAACTAGAC+GGG | 0.542351 | 2_4:-62237518 | None:intergenic |
| TCAAAGAGTGTAGCTAGTCC+TGG | 0.543158 | 2_4:+62237619 | Msa0340820:CDS |
| CAAGGATGGCAGCACATGAA+GGG | 0.544109 | 2_4:-62236594 | None:intergenic |
| CAAGGGAGATAGCCCAGAGC+AGG | 0.545536 | 2_4:+62235301 | Msa0340820:CDS |
| ATTTACAGGAGACAGAGGTA+TGG | 0.546956 | 2_4:-62235207 | None:intergenic |
| TGTGCAAGTTGATTGAGTAT+TGG | 0.549213 | 2_4:+62236922 | Msa0340820:CDS |
| TATCTAGGGAGCGTAAAAGA+TGG | 0.550604 | 2_4:+62235768 | Msa0340820:CDS |
| GAACAACGAGGGTGATAGGC+TGG | 0.559162 | 2_4:+62233644 | Msa0340820:CDS |
| GTGTAGCTAGTCCTGGTAGC+CGG | 0.559875 | 2_4:+62237626 | Msa0340820:CDS |
| TGGTGCAGAGTATATTAGAA+AGG | 0.560870 | 2_4:+62236565 | Msa0340820:CDS |
| ACAAGGATGGCAGCACATGA+AGG | 0.562454 | 2_4:-62236595 | None:intergenic |
| ACAAGATCTGGTTACTTCAA+GGG | 0.568314 | 2_4:+62235284 | Msa0340820:CDS |
| AAATTAAATCAGGACTATAC+GGG | 0.570034 | 2_4:+62237935 | Msa0340820:three_prime_UTR |
| ACTGGTGATTCGAGAAGTGC+TGG | 0.570423 | 2_4:+62235326 | Msa0340820:CDS |
| GACGGGGAGAAGCAACTAGA+CGG | 0.572216 | 2_4:-62237519 | None:intergenic |
| ACATACCGACATGTGAAGGC+AGG | 0.575866 | 2_4:-62233693 | None:intergenic |
| AGAAGCCAAGAGTCTGGAGG+CGG | 0.576842 | 2_4:+62237453 | Msa0340820:CDS |
| GCAACATGTACTATTTGAAG+AGG | 0.579067 | 2_4:+62236661 | Msa0340820:CDS |
| CAGTAATATGAGGATGTGAA+TGG | 0.584536 | 2_4:-62233669 | None:intergenic |
| GGATATGTCAGAAAGTATGC+AGG | 0.584919 | 2_4:+62235842 | Msa0340820:CDS |
| GAAGGCAGGACAGTAATATG+AGG | 0.590307 | 2_4:-62233679 | None:intergenic |
| ACAGTTGAGGTTGAAGAAGG+AGG | 0.602951 | 2_4:+62232547 | Msa0340820:five_prime_UTR |
| GATAGCCCAGAGCAGGACAC+TGG | 0.603898 | 2_4:+62235308 | Msa0340820:CDS |
| AGGTTGAAGAAGGAGGCGAG+AGG | 0.607767 | 2_4:+62232554 | Msa0340820:five_prime_UTR |
| AAGTACATACCGACATGTGA+AGG | 0.609102 | 2_4:-62233697 | None:intergenic |
| AAGCCATCTTACAAAATACA+AGG | 0.610913 | 2_4:+62236702 | Msa0340820:CDS |
| CATCGCAGTTGATGATCCCA+TGG | 0.612966 | 2_4:+62235821 | Msa0340820:CDS |
| ATGTACTATTTGAAGAGGAA+CGG | 0.613140 | 2_4:+62236666 | Msa0340820:CDS |
| TGTTTCTGACTAGACAGTTG+AGG | 0.614389 | 2_4:+62232534 | Msa0340820:five_prime_UTR |
| ATACTTTCTGACATATCCAT+GGG | 0.614506 | 2_4:-62235837 | None:intergenic |
| ACTGTCCTGCCTTCACATGT+CGG | 0.615521 | 2_4:+62233688 | Msa0340820:CDS |
| TTCGCCGCTATCATCATACA+AGG | 0.623157 | 2_4:+62236634 | Msa0340820:CDS |
| TTACAACGAAGATGCAAACA+AGG | 0.623673 | 2_4:+62235032 | Msa0340820:CDS |
| AAGGATGGCAGCACATGAAG+GGG | 0.623863 | 2_4:-62236593 | None:intergenic |
| TGAAACTAATCCTGAACAGT+TGG | 0.624149 | 2_4:+62232983 | Msa0340820:CDS |
| GCGGAGGCATCTACGTCCAG+AGG | 0.627316 | 2_4:+62237472 | Msa0340820:CDS |
| GCTCCCTAGATAGTTGGCAT+CGG | 0.649706 | 2_4:-62235757 | None:intergenic |
| TCTTGTTGTTAAATTCTCTG+AGG | 0.649767 | 2_4:-62235267 | None:intergenic |
| GGGGTGCATCTCCTCAAACA+AGG | 0.651860 | 2_4:+62232937 | Msa0340820:CDS |
| CGGGGAGAAGCAACTAGACG+GGG | 0.653934 | 2_4:-62237517 | None:intergenic |
| ATCAAGGTTGATAAAAGACA+AGG | 0.656437 | 2_4:-62236612 | None:intergenic |
| CGGAGGCATCTACGTCCAGA+GGG | 0.659336 | 2_4:+62237473 | Msa0340820:CDS |
| AGTGTGACTGCATTGATATG+GGG | 0.661338 | 2_4:+62232918 | Msa0340820:CDS |
| ACCTCATGTCCATATTTGAG+CGG | 0.663052 | 2_4:-62235875 | None:intergenic |
| ATGGGAGATGCAACTTGACG+GGG | 0.663091 | 2_4:-62237535 | None:intergenic |
| CACCACTCACAATTGTACAC+AGG | 0.666140 | 2_4:-62237836 | None:intergenic |
| ACCGCTCAAATATGGACATG+AGG | 0.667262 | 2_4:+62235874 | Msa0340820:CDS |
| TGAAGAAGCCAAGAGTCTGG+AGG | 0.667597 | 2_4:+62237450 | Msa0340820:CDS |
| AAGCCTGATAAGTCGAAGTG+TGG | 0.672156 | 2_4:-62236896 | None:intergenic |
| GTGTGGTGTATGAAAGCGAG+TGG | 0.677265 | 2_4:-62236879 | None:intergenic |
| ATACTCAATCAACTTGCACA+AGG | 0.679543 | 2_4:-62236919 | None:intergenic |
| AGATCCTTGTATGATGATAG+CGG | 0.689342 | 2_4:-62236638 | None:intergenic |
| ACATAGAATGTACATGATAG+CGG | 0.690172 | 2_4:+62237740 | Msa0340820:three_prime_UTR |
| TACAACTGGAAGAACAACGA+GGG | 0.713101 | 2_4:+62233633 | Msa0340820:CDS |
| AGGTTGATAAAAGACAAGGA+TGG | 0.722279 | 2_4:-62236608 | None:intergenic |
| TACCTGTGTACAATTGTGAG+TGG | 0.729721 | 2_4:+62237834 | Msa0340820:three_prime_UTR |
| GTTGCATCTCCCATACATCG+AGG | 0.759729 | 2_4:+62237544 | Msa0340820:CDS |
| TTACAACTGGAAGAACAACG+AGG | 0.766921 | 2_4:+62233632 | Msa0340820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAATAAAGAAAAAAT+TGG | - | chr2_4:62232800-62232819 | None:intergenic | 10.0% |
| !!! | AATAAAGAATTATTACTTTT+TGG | + | chr2_4:62237008-62237027 | Msa0340820:intron | 10.0% |
| !!! | TATTAAAATTTTCAACTTGA+TGG | - | chr2_4:62232443-62232462 | None:intergenic | 15.0% |
| !!! | AAAACTCATTTTTAATTCAA+TGG | + | chr2_4:62233076-62233095 | Msa0340820:intron | 15.0% |
| !!! | TTTAAATTGTAATTTTTCCT+AGG | + | chr2_4:62235692-62235711 | Msa0340820:intron | 15.0% |
| !!! | TTAAATTGTAATTTTTCCTA+GGG | + | chr2_4:62235693-62235712 | Msa0340820:intron | 15.0% |
| !!! | GTTTTAAAATAACACATATT+TGG | + | chr2_4:62236536-62236555 | Msa0340820:intron | 15.0% |
| !! | AAATAGGACTAATAAATAAA+CGG | - | chr2_4:62236968-62236987 | None:intergenic | 15.0% |
| !!! | TTTATTAGTCCTATTTTTAT+TGG | + | chr2_4:62236972-62236991 | Msa0340820:intron | 15.0% |
| !! | GTAAATAACAGTAAAAAAAT+TGG | - | chr2_4:62237215-62237234 | None:intergenic | 15.0% |
| !!! | AAGTTGAAAATTTTAATAGC+TGG | + | chr2_4:62232445-62232464 | Msa0340820:five_prime_UTR | 20.0% |
| !! | ATTTGTTTAATTAGCCAATT+AGG | + | chr2_4:62232468-62232487 | Msa0340820:five_prime_UTR | 20.0% |
| !! | CTATTAATCTTTAACCTAAT+TGG | - | chr2_4:62232485-62232504 | None:intergenic | 20.0% |
| !!! | AGAATGAGATTATCATTTTA+GGG | + | chr2_4:62232608-62232627 | Msa0340820:five_prime_UTR | 20.0% |
| !!! | ATTATCATTTTAGGGTTTTT+AGG | + | chr2_4:62232616-62232635 | Msa0340820:five_prime_UTR | 20.0% |
| !!! | TTATCATTTTAGGGTTTTTA+GGG | + | chr2_4:62232617-62232636 | Msa0340820:five_prime_UTR | 20.0% |
| !! | AACATTGTGAAATACAAATT+GGG | - | chr2_4:62232851-62232870 | None:intergenic | 20.0% |
| !! | ATAGACTATAAATAATAGGT+AGG | - | chr2_4:62234225-62234244 | None:intergenic | 20.0% |
| !! | GATGATAGACTATAAATAAT+AGG | - | chr2_4:62234229-62234248 | None:intergenic | 20.0% |
| !! | TGATGAATCTATATGAATAA+TGG | - | chr2_4:62235240-62235259 | None:intergenic | 20.0% |
| !! | AAATGCAATTATGATTATAC+TGG | - | chr2_4:62235614-62235633 | None:intergenic | 20.0% |
| !! | GTCAAACTTTGAATTATAAA+TGG | + | chr2_4:62236381-62236400 | Msa0340820:intron | 20.0% |
| !! | TTAAAATAACACATATTTGG+TGG | + | chr2_4:62236539-62236558 | Msa0340820:intron | 20.0% |
| !!! | CGTACATATATGAAATTTTA+TGG | + | chr2_4:62236757-62236776 | Msa0340820:intron | 20.0% |
| !!! | ATTTTATGGAAACACTATTT+TGG | + | chr2_4:62236771-62236790 | Msa0340820:intron | 20.0% |
| !!! | TTTTATGGAAACACTATTTT+GGG | + | chr2_4:62236772-62236791 | Msa0340820:intron | 20.0% |
| !! | AATAGGACTAATAAATAAAC+GGG | - | chr2_4:62236967-62236986 | None:intergenic | 20.0% |
| !! | AAGAACAAACCAATAAAAAT+AGG | - | chr2_4:62236984-62237003 | None:intergenic | 20.0% |
| !! | TTGGAAATAAAATTTCATAG+AGG | - | chr2_4:62237196-62237215 | None:intergenic | 20.0% |
| !!! | TTTTTACTGTTATTTACAGA+AGG | + | chr2_4:62237218-62237237 | Msa0340820:intron | 20.0% |
| !!! | TTAGTTCTGAATCTTAATTA+GGG | - | chr2_4:62237244-62237263 | None:intergenic | 20.0% |
| !! | AGTTATGTCAAAATTAAATC+AGG | + | chr2_4:62237925-62237944 | Msa0340820:three_prime_UTR | 20.0% |
| !! | AAAATTAAATCAGGACTATA+CGG | + | chr2_4:62237934-62237953 | Msa0340820:three_prime_UTR | 20.0% |
| !! | GAGAATGAGATTATCATTTT+AGG | + | chr2_4:62232607-62232626 | Msa0340820:five_prime_UTR | 25.0% |
| ! | ACATTGTGAAATACAAATTG+GGG | - | chr2_4:62232850-62232869 | None:intergenic | 25.0% |
| ! | CAACATTGTGAAATACAAAT+TGG | - | chr2_4:62232852-62232871 | None:intergenic | 25.0% |
| ! | AATAACACAGAACAAGAAAA+AGG | - | chr2_4:62233036-62233055 | None:intergenic | 25.0% |
| ! | ATTTCTAATTGAAACATGTG+TGG | - | chr2_4:62233239-62233258 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTAACCAAACA+GGG | - | chr2_4:62233289-62233308 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTAACCAAAC+AGG | - | chr2_4:62233290-62233309 | None:intergenic | 25.0% |
| ! | TGTATAACATAAAGGATGTT+AGG | - | chr2_4:62233916-62233935 | None:intergenic | 25.0% |
| ! | ATATGAATCAAATATGTTGC+TGG | + | chr2_4:62234050-62234069 | Msa0340820:intron | 25.0% |
| ! | ATAGATACTAGATCAAAATG+TGG | + | chr2_4:62234085-62234104 | Msa0340820:intron | 25.0% |
| ! | CTTGAATACATTGAATGTAA+TGG | - | chr2_4:62234140-62234159 | None:intergenic | 25.0% |
| !!! | ATTTACTTTGGTTTTGGATA+GGG | - | chr2_4:62234189-62234208 | None:intergenic | 25.0% |
| ! | GAAGTATAAATAGCAGATAT+AGG | - | chr2_4:62234565-62234584 | None:intergenic | 25.0% |
| !!! | TGCTATTTATACTTCACTTT+TGG | + | chr2_4:62234570-62234589 | Msa0340820:intron | 25.0% |
| !!! | TACTTCACTTTTGGTATTTA+AGG | + | chr2_4:62234579-62234598 | Msa0340820:intron | 25.0% |
| ! | TGTAAGACATAGAAAATGTA+TGG | + | chr2_4:62234622-62234641 | Msa0340820:intron | 25.0% |
| !!! | GTTCTATAAATTAGGTTGAA+AGG | + | chr2_4:62234699-62234718 | Msa0340820:intron | 25.0% |
| !! | TAATGATTATACTGTTGCTT+TGG | - | chr2_4:62234924-62234943 | None:intergenic | 25.0% |
| !! | TTTACTATTTTGTAGATGTG+CGG | + | chr2_4:62234953-62234972 | Msa0340820:intron | 25.0% |
| !!! | ATAATGGAGCTTTTATTTAC+AGG | - | chr2_4:62235224-62235243 | None:intergenic | 25.0% |
| ! | TCACTCACAAAAATATAGAT+TGG | - | chr2_4:62235476-62235495 | None:intergenic | 25.0% |
| ! | GAAATTCTTTCCTTTATACT+GGG | + | chr2_4:62235513-62235532 | Msa0340820:intron | 25.0% |
| ! | AACATCACTTTATCAACAAA+AGG | - | chr2_4:62235551-62235570 | None:intergenic | 25.0% |
| ! | ATAAAGTGATGTTGATCTTA+TGG | + | chr2_4:62235558-62235577 | Msa0340820:intron | 25.0% |
| !! | ATAATTGCATTTTTCTGTCT+AGG | + | chr2_4:62235622-62235641 | Msa0340820:intron | 25.0% |
| ! | ACTGAAATTAGGAAGATTAA+GGG | + | chr2_4:62236095-62236114 | Msa0340820:intron | 25.0% |
| ! | TTACAGTAAAATGGATATCA+GGG | - | chr2_4:62236126-62236145 | None:intergenic | 25.0% |
| ! | TTTACAGTAAAATGGATATC+AGG | - | chr2_4:62236127-62236146 | None:intergenic | 25.0% |
| ! | CATTACTGTTTACAGTAAAA+TGG | - | chr2_4:62236135-62236154 | None:intergenic | 25.0% |
| ! | ATAGGCATTTCATATATACT+TGG | - | chr2_4:62236275-62236294 | None:intergenic | 25.0% |
| ! | TTAGTGTACTATGTTATCAT+AGG | - | chr2_4:62236293-62236312 | None:intergenic | 25.0% |
| ! | GCATTAGAAATATAATCATG+CGG | + | chr2_4:62236318-62236337 | Msa0340820:intron | 25.0% |
| ! | CATTAGAAATATAATCATGC+GGG | + | chr2_4:62236319-62236338 | Msa0340820:intron | 25.0% |
| ! | ATTAGAAATATAATCATGCG+GGG | + | chr2_4:62236320-62236339 | Msa0340820:intron | 25.0% |
| ! | ATTGTATAATGATTGTTCAC+AGG | + | chr2_4:62236461-62236480 | Msa0340820:intron | 25.0% |
| !!! | TGTTATTTTAAAACCCAAGA+TGG | - | chr2_4:62236530-62236549 | None:intergenic | 25.0% |
| ! | ATAAAATTTCATAGAGGATC+AGG | - | chr2_4:62237190-62237209 | None:intergenic | 25.0% |
| !!! | GTTAGTTCTGAATCTTAATT+AGG | - | chr2_4:62237245-62237264 | None:intergenic | 25.0% |
| ! | ATTAAGATTCAGAACTAACT+TGG | + | chr2_4:62237246-62237265 | Msa0340820:intron | 25.0% |
| !! | ACAGAAATCTCAAATTTGTT+GGG | - | chr2_4:62237348-62237367 | None:intergenic | 25.0% |
| !! | TTTCAAACTAGCAAATTTTG+CGG | - | chr2_4:62237776-62237795 | None:intergenic | 25.0% |
| ! | GACATTTTCGCGAAAAAAAT+TGG | - | chr2_4:62232658-62232677 | None:intergenic | 30.0% |
| AATTGGGATTATACTATACC+TGG | - | chr2_4:62232783-62232802 | None:intergenic | 30.0% | |
| !! | ATTTTTCAGCATTCGAAGAA+TGG | + | chr2_4:62232894-62232913 | Msa0340820:intron | 30.0% |
| !! | TTTTTCAGCATTCGAAGAAT+GGG | + | chr2_4:62232895-62232914 | Msa0340820:intron | 30.0% |
| ATTGAATGTAATTACACCTG+CGG | + | chr2_4:62233193-62233212 | Msa0340820:intron | 30.0% | |
| AACCATTGCATTAAACACAT+GGG | - | chr2_4:62233507-62233526 | None:intergenic | 30.0% | |
| AAACCATTGCATTAAACACA+TGG | - | chr2_4:62233508-62233527 | None:intergenic | 30.0% | |
| GAAGACAATATCGAAACAAT+GGG | - | chr2_4:62233738-62233757 | None:intergenic | 30.0% | |
| AGAAGACAATATCGAAACAA+TGG | - | chr2_4:62233739-62233758 | None:intergenic | 30.0% | |
| !!! | TTGTTTTAGTTGTTTGTGCT+TGG | + | chr2_4:62233779-62233798 | Msa0340820:intron | 30.0% |
| TCATAAATGCCATACACATT+AGG | - | chr2_4:62233820-62233839 | None:intergenic | 30.0% | |
| TGTTAGCATAGATTTGAGAA+AGG | + | chr2_4:62233882-62233901 | Msa0340820:intron | 30.0% | |
| CTACGAACTGTATAACATAA+AGG | - | chr2_4:62233924-62233943 | None:intergenic | 30.0% | |
| !! | GTCAACAGTATTTTTGTGTA+TGG | + | chr2_4:62233952-62233971 | Msa0340820:intron | 30.0% |
| !!! | GATTTACTTTGGTTTTGGAT+AGG | - | chr2_4:62234190-62234209 | None:intergenic | 30.0% |
| AGTCTTCGTATAATTTCTCA+TGG | - | chr2_4:62234320-62234339 | None:intergenic | 30.0% | |
| CTGTTTCAATGAAACAATAC+AGG | - | chr2_4:62234361-62234380 | None:intergenic | 30.0% | |
| ATAATTGTACATGCCATGTA+GGG | - | chr2_4:62234536-62234555 | None:intergenic | 30.0% | |
| !! | TCACTTTTGGTATTTAAGGT+AGG | + | chr2_4:62234583-62234602 | Msa0340820:intron | 30.0% |
| GCTAGAGAGTTCTATAAATT+AGG | + | chr2_4:62234691-62234710 | Msa0340820:intron | 30.0% | |
| CAGTACTCACTATTCATATA+CGG | + | chr2_4:62234751-62234770 | Msa0340820:intron | 30.0% | |
| TACGGATTCTAAACTTCTAA+TGG | + | chr2_4:62234769-62234788 | Msa0340820:intron | 30.0% | |
| ! | TGCTTTGGATAAAATCAAAC+AGG | - | chr2_4:62234909-62234928 | None:intergenic | 30.0% |
| ATGTATCAACTTCTTGATTC+TGG | + | chr2_4:62234985-62235004 | Msa0340820:CDS | 30.0% | |
| TGTATCAACTTCTTGATTCT+GGG | + | chr2_4:62234986-62235005 | Msa0340820:CDS | 30.0% | |
| TTCTTGATTCTGGGTTTATT+GGG | + | chr2_4:62234995-62235014 | Msa0340820:CDS | 30.0% | |
| !! | TCTTGTTGTTAAATTCTCTG+AGG | - | chr2_4:62235270-62235289 | None:intergenic | 30.0% |
| GAGAATTTAACAACAAGATC+TGG | + | chr2_4:62235272-62235291 | Msa0340820:CDS | 30.0% | |
| AACTGTTGTCTATTCTTCAT+GGG | - | chr2_4:62235397-62235416 | None:intergenic | 30.0% | |
| AAACTGTTGTCTATTCTTCA+TGG | - | chr2_4:62235398-62235417 | None:intergenic | 30.0% | |
| TTACATTTGAATGCAGAACA+TGG | + | chr2_4:62235430-62235449 | Msa0340820:intron | 30.0% | |
| AGTGAAGTTCTTAAAGATCA+GGG | + | chr2_4:62235491-62235510 | Msa0340820:intron | 30.0% | |
| GGAAATTCTTTCCTTTATAC+TGG | + | chr2_4:62235512-62235531 | Msa0340820:intron | 30.0% | |
| GCAATTATGATTATACTGGT+GGG | - | chr2_4:62235610-62235629 | None:intergenic | 30.0% | |
| TGCAATTATGATTATACTGG+TGG | - | chr2_4:62235611-62235630 | None:intergenic | 30.0% | |
| ! | AATTGTAATTTTTCCTAGGG+TGG | + | chr2_4:62235696-62235715 | Msa0340820:intron | 30.0% |
| ! | ATTGTAATTTTTCCTAGGGT+GGG | + | chr2_4:62235697-62235716 | Msa0340820:intron | 30.0% |
| ATACTTTCTGACATATCCAT+GGG | - | chr2_4:62235840-62235859 | None:intergenic | 30.0% | |
| TGTTTATCAACCGACAATTT+AGG | + | chr2_4:62235934-62235953 | Msa0340820:intron | 30.0% | |
| AAAAAACACGCCTAAATTGT+CGG | - | chr2_4:62235947-62235966 | None:intergenic | 30.0% | |
| TTCCTAATTTCAGTCTCTAA+TGG | - | chr2_4:62236089-62236108 | None:intergenic | 30.0% | |
| GACTGAAATTAGGAAGATTA+AGG | + | chr2_4:62236094-62236113 | Msa0340820:intron | 30.0% | |
| CTGAAATTAGGAAGATTAAG+GGG | + | chr2_4:62236096-62236115 | Msa0340820:intron | 30.0% | |
| TTAGAAATATAATCATGCGG+GGG | + | chr2_4:62236321-62236340 | Msa0340820:intron | 30.0% | |
| ! | ACCATGTCTAATCTTTTATG+AGG | + | chr2_4:62236487-62236506 | Msa0340820:intron | 30.0% |
| ACCTCATAAAAGATTAGACA+TGG | - | chr2_4:62236491-62236510 | None:intergenic | 30.0% | |
| !! | ATCAAGGTTGATAAAAGACA+AGG | - | chr2_4:62236615-62236634 | None:intergenic | 30.0% |
| ATGTACTATTTGAAGAGGAA+CGG | + | chr2_4:62236666-62236685 | Msa0340820:CDS | 30.0% | |
| AAGCCATCTTACAAAATACA+AGG | + | chr2_4:62236702-62236721 | Msa0340820:CDS | 30.0% | |
| AAAGTACAAACAAATGGCAT+AGG | - | chr2_4:62236839-62236858 | None:intergenic | 30.0% | |
| CCATTTGTTTGTACTTTGTA+GGG | + | chr2_4:62236842-62236861 | Msa0340820:intron | 30.0% | |
| GACTAAGAGAGAATGAAATT+CGG | + | chr2_4:62237068-62237087 | Msa0340820:CDS | 30.0% | |
| ACTAAGAGAGAATGAAATTC+GGG | + | chr2_4:62237069-62237088 | Msa0340820:CDS | 30.0% | |
| ! | AATAACTTGTGAGCATGTTT+AGG | - | chr2_4:62237319-62237338 | None:intergenic | 30.0% |
| GACAGAAATCTCAAATTTGT+TGG | - | chr2_4:62237349-62237368 | None:intergenic | 30.0% | |
| TAACAATGTTGAATTCTCGT+TGG | + | chr2_4:62237661-62237680 | Msa0340820:exon | 30.0% | |
| ACATAGAATGTACATGATAG+CGG | + | chr2_4:62237740-62237759 | Msa0340820:three_prime_UTR | 30.0% | |
| !!! | CAGTGAAATATTTTGGTTGT+TGG | + | chr2_4:62237804-62237823 | Msa0340820:three_prime_UTR | 30.0% |
| TTGTTCCTCCAAGAATAAAA+TGG | - | chr2_4:62237868-62237887 | None:intergenic | 30.0% | |
| AGTTATCTCAATGACATTCA+TGG | + | chr2_4:62237893-62237912 | Msa0340820:three_prime_UTR | 30.0% | |
| TGAAAATGTCCGAAGAAGTT+TGG | + | chr2_4:62232689-62232708 | Msa0340820:CDS | 35.0% | |
| GCATGTTAACCAAACTTCTT+CGG | - | chr2_4:62232701-62232720 | None:intergenic | 35.0% | |
| ACTGAAACCGAAGAGATTAT+GGG | + | chr2_4:62232739-62232758 | Msa0340820:CDS | 35.0% | |
| AAGAAGACCCATAATCTCTT+CGG | - | chr2_4:62232749-62232768 | None:intergenic | 35.0% | |
| TGAAACTAATCCTGAACAGT+TGG | + | chr2_4:62232983-62233002 | Msa0340820:CDS | 35.0% | |
| TGCTTCATAAGTGATATGTG+AGG | - | chr2_4:62233114-62233133 | None:intergenic | 35.0% | |
| GAGAGCTTATGAAAATAAGC+TGG | + | chr2_4:62233400-62233419 | Msa0340820:intron | 35.0% | |
| ! | GCTTATTTGAGTTTACCTAC+CGG | - | chr2_4:62233471-62233490 | None:intergenic | 35.0% |
| TCAAATAAGCCAATCCAAAC+AGG | + | chr2_4:62233481-62233500 | Msa0340820:intron | 35.0% | |
| AGAGCAGCAACTATCAAAAT+TGG | - | chr2_4:62233547-62233566 | None:intergenic | 35.0% | |
| TTGCTGCTCTTAGTGATTTA+AGG | + | chr2_4:62233557-62233576 | Msa0340820:intron | 35.0% | |
| CATTCTGTGCTATGAAGTTA+AGG | - | chr2_4:62233608-62233627 | None:intergenic | 35.0% | |
| CAGTAATATGAGGATGTGAA+TGG | - | chr2_4:62233672-62233691 | None:intergenic | 35.0% | |
| AATATCGAAACAATGGGAGA+CGG | - | chr2_4:62233732-62233751 | None:intergenic | 35.0% | |
| TTAGTTGTTTGTGCTTGGAT+TGG | + | chr2_4:62233784-62233803 | Msa0340820:intron | 35.0% | |
| GAACTGAATCCTAATGTGTA+TGG | + | chr2_4:62233808-62233827 | Msa0340820:intron | 35.0% | |
| CCTTCAATTGATGTTGAAGT+TGG | - | chr2_4:62234011-62234030 | None:intergenic | 35.0% | |
| CCAACTTCAACATCAATTGA+AGG | + | chr2_4:62234008-62234027 | Msa0340820:intron | 35.0% | |
| AATCAAATATGTTGCTGGAG+AGG | + | chr2_4:62234055-62234074 | Msa0340820:intron | 35.0% | |
| TTCAATGTATTCAAGCATCC+AGG | + | chr2_4:62234145-62234164 | Msa0340820:intron | 35.0% | |
| !!! | TTTGGATAGGGTTTTAGAGT+GGG | - | chr2_4:62234177-62234196 | None:intergenic | 35.0% |
| !!! | TTTTGGATAGGGTTTTAGAG+TGG | - | chr2_4:62234178-62234197 | None:intergenic | 35.0% |
| !! | CGACAGATTTACTTTGGTTT+TGG | - | chr2_4:62234195-62234214 | None:intergenic | 35.0% |
| TCTAACTAACTCACAGACAA+AGG | + | chr2_4:62234257-62234276 | Msa0340820:intron | 35.0% | |
| CTAACTAACTCACAGACAAA+GGG | + | chr2_4:62234258-62234277 | Msa0340820:intron | 35.0% | |
| TAACTAACTCACAGACAAAG+GGG | + | chr2_4:62234259-62234278 | Msa0340820:intron | 35.0% | |
| ATTTGCATCAGCCAAATGAT+AGG | - | chr2_4:62234289-62234308 | None:intergenic | 35.0% | |
| GGGTATTATTCAGTGATTTG+TGG | - | chr2_4:62234468-62234487 | None:intergenic | 35.0% | |
| AAAGGTTACAGTAGAATGCA+GGG | - | chr2_4:62234488-62234507 | None:intergenic | 35.0% | |
| TCTACTGTAACCTTTCTGAA+TGG | + | chr2_4:62234493-62234512 | Msa0340820:intron | 35.0% | |
| !! | TCAAGTTGAACCATTCAGAA+AGG | - | chr2_4:62234506-62234525 | None:intergenic | 35.0% |
| GATAATTGTACATGCCATGT+AGG | - | chr2_4:62234537-62234556 | None:intergenic | 35.0% | |
| !! | ATCACAAACTTTTGAGGAAG+AGG | - | chr2_4:62234800-62234819 | None:intergenic | 35.0% |
| TTCCTCAAAAGTTTGTGATC+TGG | + | chr2_4:62234801-62234820 | Msa0340820:intron | 35.0% | |
| ! | AACCAGATCACAAACTTTTG+AGG | - | chr2_4:62234806-62234825 | None:intergenic | 35.0% |
| CTTCTTGATTCTGGGTTTAT+TGG | + | chr2_4:62234994-62235013 | Msa0340820:CDS | 35.0% | |
| TTACAACGAAGATGCAAACA+AGG | + | chr2_4:62235032-62235051 | Msa0340820:CDS | 35.0% | |
| ! | GCTTTGAACTGTATTCAGAT+AGG | + | chr2_4:62235125-62235144 | Msa0340820:intron | 35.0% |
| !! | CTTTTATTTACAGGAGACAG+AGG | - | chr2_4:62235215-62235234 | None:intergenic | 35.0% |
| ! | GTTAAATTCTCTGAGGAACT+TGG | - | chr2_4:62235263-62235282 | None:intergenic | 35.0% |
| AACAAGATCTGGTTACTTCA+AGG | + | chr2_4:62235283-62235302 | Msa0340820:CDS | 35.0% | |
| ACAAGATCTGGTTACTTCAA+GGG | + | chr2_4:62235284-62235303 | Msa0340820:CDS | 35.0% | |
| ACTGTTGTCTATTCTTCATG+GGG | - | chr2_4:62235396-62235415 | None:intergenic | 35.0% | |
| ATTTGAATGCAGAACATGGT+GGG | + | chr2_4:62235434-62235453 | Msa0340820:intron | 35.0% | |
| GAGTGAAGTTCTTAAAGATC+AGG | + | chr2_4:62235490-62235509 | Msa0340820:intron | 35.0% | |
| GCATACAAAACCCAGTATAA+AGG | - | chr2_4:62235526-62235545 | None:intergenic | 35.0% | |
| GATCTTATGGAAATGTGTTC+AGG | + | chr2_4:62235571-62235590 | Msa0340820:intron | 35.0% | |
| ! | TTGTAATTTTTCCTAGGGTG+GGG | + | chr2_4:62235698-62235717 | Msa0340820:intron | 35.0% |
| CATACTTTCTGACATATCCA+TGG | - | chr2_4:62235841-62235860 | None:intergenic | 35.0% | |
| !!! | GACAATTTAGGCGTGTTTTT+TGG | + | chr2_4:62235946-62235965 | Msa0340820:intron | 35.0% |
| !!! | TTAGGCGTGTTTTTTGGATT+TGG | + | chr2_4:62235952-62235971 | Msa0340820:intron | 35.0% |
| TAGTATATAAAGCTCAACCC+AGG | + | chr2_4:62236023-62236042 | Msa0340820:intron | 35.0% | |
| TGCCATTAGAGACTGAAATT+AGG | + | chr2_4:62236084-62236103 | Msa0340820:intron | 35.0% | |
| AAATTAGGAAGATTAAGGGG+AGG | + | chr2_4:62236099-62236118 | Msa0340820:intron | 35.0% | |
| AATTAGGAAGATTAAGGGGA+GGG | + | chr2_4:62236100-62236119 | Msa0340820:intron | 35.0% | |
| AAGGAAAGCTTCATAAGCAA+AGG | - | chr2_4:62236232-62236251 | None:intergenic | 35.0% | |
| TTTGCTTATGAAGCTTTCCT+TGG | + | chr2_4:62236231-62236250 | Msa0340820:intron | 35.0% | |
| ! | ATATATACTTGGTGGAACAG+TGG | - | chr2_4:62236264-62236283 | None:intergenic | 35.0% |
| GGCATTTCATATATACTTGG+TGG | - | chr2_4:62236272-62236291 | None:intergenic | 35.0% | |
| TAGAAATATAATCATGCGGG+GGG | + | chr2_4:62236322-62236341 | Msa0340820:intron | 35.0% | |
| ACAAGATAGTTTCTCCATCT+TGG | + | chr2_4:62236513-62236532 | Msa0340820:intron | 35.0% | |
| CAAGATAGTTTCTCCATCTT+GGG | + | chr2_4:62236514-62236533 | Msa0340820:intron | 35.0% | |
| TGGTGCAGAGTATATTAGAA+AGG | + | chr2_4:62236565-62236584 | Msa0340820:CDS | 35.0% | |
| !! | AGGTTGATAAAAGACAAGGA+TGG | - | chr2_4:62236611-62236630 | None:intergenic | 35.0% |
| AGATCCTTGTATGATGATAG+CGG | - | chr2_4:62236641-62236660 | None:intergenic | 35.0% | |
| GCAACATGTACTATTTGAAG+AGG | + | chr2_4:62236661-62236680 | Msa0340820:CDS | 35.0% | |
| ! | CCACCTTGTATTTTGTAAGA+TGG | - | chr2_4:62236708-62236727 | None:intergenic | 35.0% |
| CCATCTTACAAAATACAAGG+TGG | + | chr2_4:62236705-62236724 | Msa0340820:intron | 35.0% | |
| GCCATTTGTTTGTACTTTGT+AGG | + | chr2_4:62236841-62236860 | Msa0340820:intron | 35.0% | |
| CCCTACAAAGTACAAACAAA+TGG | - | chr2_4:62236845-62236864 | None:intergenic | 35.0% | |
| TTGTTTGTACTTTGTAGGGA+TGG | + | chr2_4:62236846-62236865 | Msa0340820:intron | 35.0% | |
| TGTTTGTACTTTGTAGGGAT+GGG | + | chr2_4:62236847-62236866 | Msa0340820:intron | 35.0% | |
| ATACTCAATCAACTTGCACA+AGG | - | chr2_4:62236922-62236941 | None:intergenic | 35.0% | |
| !! | TGTGCAAGTTGATTGAGTAT+TGG | + | chr2_4:62236922-62236941 | Msa0340820:CDS | 35.0% |
| CTCTTAAGATACTGACAACA+TGG | - | chr2_4:62237140-62237159 | None:intergenic | 35.0% | |
| CATGTTGTCAGTATCTTAAG+AGG | + | chr2_4:62237138-62237157 | Msa0340820:intron | 35.0% | |
| TTGTCAGTATCTTAAGAGGT+TGG | + | chr2_4:62237142-62237161 | Msa0340820:intron | 35.0% | |
| ACATAGGACATGATAGAAGA+GGG | - | chr2_4:62237274-62237293 | None:intergenic | 35.0% | |
| TACATAGGACATGATAGAAG+AGG | - | chr2_4:62237275-62237294 | None:intergenic | 35.0% | |
| AAGTCAATAGACAGTGAAGA+TGG | - | chr2_4:62237399-62237418 | None:intergenic | 35.0% | |
| ! | ATTGTTATCCTTTTCTGCTC+CGG | - | chr2_4:62237648-62237667 | None:intergenic | 35.0% |
| ! | CGATGCTCAGTGAAATATTT+TGG | + | chr2_4:62237797-62237816 | Msa0340820:three_prime_UTR | 35.0% |
| !! | TGACTTGGCCATTTTATTCT+TGG | + | chr2_4:62237857-62237876 | Msa0340820:three_prime_UTR | 35.0% |
| ATCTCAATGACATTCATGGT+TGG | + | chr2_4:62237897-62237916 | Msa0340820:three_prime_UTR | 35.0% | |
| ! | TGTTTCTGACTAGACAGTTG+AGG | + | chr2_4:62232534-62232553 | Msa0340820:five_prime_UTR | 40.0% |
| TAGACAGTTGAGGTTGAAGA+AGG | + | chr2_4:62232544-62232563 | Msa0340820:five_prime_UTR | 40.0% | |
| CATAATCTCTTCGGTTTCAG+TGG | - | chr2_4:62232740-62232759 | None:intergenic | 40.0% | |
| CACTGAAACCGAAGAGATTA+TGG | + | chr2_4:62232738-62232757 | Msa0340820:CDS | 40.0% | |
| GAGATTATGGGTCTTCTTCT+TGG | + | chr2_4:62232751-62232770 | Msa0340820:CDS | 40.0% | |
| ! | GAGTGTGACTGCATTGATAT+GGG | + | chr2_4:62232917-62232936 | Msa0340820:CDS | 40.0% |
| ! | AGTGTGACTGCATTGATATG+GGG | + | chr2_4:62232918-62232937 | Msa0340820:CDS | 40.0% |
| TCACTTATGAAGCAGAGACA+CGG | + | chr2_4:62233120-62233139 | Msa0340820:intron | 40.0% | |
| TTCTGCAGAGCATATCACTT+AGG | + | chr2_4:62233263-62233282 | Msa0340820:intron | 40.0% | |
| ATTAAACACATGGGCCTGTT+TGG | - | chr2_4:62233498-62233517 | None:intergenic | 40.0% | |
| CACAGAATGACTGTTACAAC+TGG | + | chr2_4:62233619-62233638 | Msa0340820:CDS | 40.0% | |
| TTACAACTGGAAGAACAACG+AGG | + | chr2_4:62233632-62233651 | Msa0340820:CDS | 40.0% | |
| TACAACTGGAAGAACAACGA+GGG | + | chr2_4:62233633-62233652 | Msa0340820:CDS | 40.0% | |
| AAGTACATACCGACATGTGA+AGG | - | chr2_4:62233700-62233719 | None:intergenic | 40.0% | |
| CACATGTCGGTATGTACTTT+CGG | + | chr2_4:62233701-62233720 | Msa0340820:intron | 40.0% | |
| ACATGTCGGTATGTACTTTC+GGG | + | chr2_4:62233702-62233721 | Msa0340820:intron | 40.0% | |
| ATATCGAAACAATGGGAGAC+GGG | - | chr2_4:62233731-62233750 | None:intergenic | 40.0% | |
| !!! | TTTTAGAGTGGGAGATAACC+TGG | - | chr2_4:62234166-62234185 | None:intergenic | 40.0% |
| AACTAACTCACAGACAAAGG+GGG | + | chr2_4:62234260-62234279 | Msa0340820:intron | 40.0% | |
| AAAGGGGGTTTCCTATCATT+TGG | + | chr2_4:62234275-62234294 | Msa0340820:intron | 40.0% | |
| GAAAGGTTACAGTAGAATGC+AGG | - | chr2_4:62234489-62234508 | None:intergenic | 40.0% | |
| !! | AGGTTGAAAGGCTTTTTAGC+AGG | + | chr2_4:62234711-62234730 | Msa0340820:intron | 40.0% |
| !! | TGCTTGTTATCACGTTGGAT+AGG | + | chr2_4:62234843-62234862 | Msa0340820:intron | 40.0% |
| AACGAAGATGCAAACAAGGT+TGG | + | chr2_4:62235036-62235055 | Msa0340820:intron | 40.0% | |
| ATTGCTTTCCAGTCATCTGA+TGG | + | chr2_4:62235161-62235180 | Msa0340820:CDS | 40.0% | |
| ! | TTTACAGGAGACAGAGGTAT+GGG | - | chr2_4:62235209-62235228 | None:intergenic | 40.0% |
| ATTTACAGGAGACAGAGGTA+TGG | - | chr2_4:62235210-62235229 | None:intergenic | 40.0% | |
| CATTTGAATGCAGAACATGG+TGG | + | chr2_4:62235433-62235452 | Msa0340820:intron | 40.0% | |
| ! | TGTAATTTTTCCTAGGGTGG+GGG | + | chr2_4:62235699-62235718 | Msa0340820:intron | 40.0% |
| ! | TTTTACGCTCCCTAGATAGT+TGG | - | chr2_4:62235766-62235785 | None:intergenic | 40.0% |
| ! | TATCTAGGGAGCGTAAAAGA+TGG | + | chr2_4:62235768-62235787 | Msa0340820:CDS | 40.0% |
| ! | GGATATGTCAGAAAGTATGC+AGG | + | chr2_4:62235842-62235861 | Msa0340820:CDS | 40.0% |
| ACCTCATGTCCATATTTGAG+CGG | - | chr2_4:62235878-62235897 | None:intergenic | 40.0% | |
| TGACCTGGTGATAAATGTCT+GGG | + | chr2_4:62236046-62236065 | Msa0340820:intron | 40.0% | |
| !! | TCATACTGAGGAGCATTCTA+GGG | - | chr2_4:62236201-62236220 | None:intergenic | 40.0% |
| !! | ATCATACTGAGGAGCATTCT+AGG | - | chr2_4:62236202-62236221 | None:intergenic | 40.0% |
| ! | TAACACATATTTGGTGGCAG+TGG | + | chr2_4:62236545-62236564 | Msa0340820:intron | 40.0% |
| ! | CTACATCTAAAGCGCTACAT+AGG | - | chr2_4:62237290-62237309 | None:intergenic | 40.0% |
| GATGAACTTCCTCGATGTAT+GGG | - | chr2_4:62237556-62237575 | None:intergenic | 40.0% | |
| AGATGAACTTCCTCGATGTA+TGG | - | chr2_4:62237557-62237576 | None:intergenic | 40.0% | |
| CAGAGTTCAAGTGAATCTCT+TGG | + | chr2_4:62237595-62237614 | Msa0340820:CDS | 40.0% | |
| ! | CAAACTAGCAAATTTTGCGG+AGG | - | chr2_4:62237773-62237792 | None:intergenic | 40.0% |
| TACCTGTGTACAATTGTGAG+TGG | + | chr2_4:62237834-62237853 | Msa0340820:three_prime_UTR | 40.0% | |
| TACAATTGTGAGTGGTGACT+TGG | + | chr2_4:62237842-62237861 | Msa0340820:three_prime_UTR | 40.0% | |
| !! | CTTGGCCATTTTATTCTTGG+AGG | + | chr2_4:62237860-62237879 | Msa0340820:three_prime_UTR | 40.0% |
| ACAGTTGAGGTTGAAGAAGG+AGG | + | chr2_4:62232547-62232566 | Msa0340820:five_prime_UTR | 45.0% | |
| TCTTCTTCTTGGCGATATCC+AGG | + | chr2_4:62232762-62232781 | Msa0340820:CDS | 45.0% | |
| ! | GGAGTGTGACTGCATTGATA+TGG | + | chr2_4:62232916-62232935 | Msa0340820:CDS | 45.0% |
| CACTTATGAAGCAGAGACAC+GGG | + | chr2_4:62233121-62233140 | Msa0340820:intron | 45.0% | |
| ACTTATGAAGCAGAGACACG+GGG | + | chr2_4:62233122-62233141 | Msa0340820:intron | 45.0% | |
| CATATCACTTAGGCCCTGTT+TGG | + | chr2_4:62233273-62233292 | Msa0340820:intron | 45.0% | |
| GTTCTCACAACTGCTTAAGC+CGG | + | chr2_4:62233449-62233468 | Msa0340820:intron | 45.0% | |
| GGCCCATGTGTTTAATGCAA+TGG | + | chr2_4:62233502-62233521 | Msa0340820:intron | 45.0% | |
| GAAGGCAGGACAGTAATATG+AGG | - | chr2_4:62233682-62233701 | None:intergenic | 45.0% | |
| CGTGCTCGACAGATTTACTT+TGG | - | chr2_4:62234201-62234220 | None:intergenic | 45.0% | |
| !! | GATTTGTGGAGAAGTGTCTG+AGG | - | chr2_4:62234454-62234473 | None:intergenic | 45.0% |
| !! | CAGCATGCTTGTTATCACGT+TGG | + | chr2_4:62234838-62234857 | Msa0340820:intron | 45.0% |
| ! | TTTTGTAGATGTGCGGACTC+AGG | + | chr2_4:62234960-62234979 | Msa0340820:intron | 45.0% |
| TCTGCTTTCCATCAGATGAC+TGG | - | chr2_4:62235172-62235191 | None:intergenic | 45.0% | |
| GAAATGTGTTCAGGCCCTAA+AGG | + | chr2_4:62235580-62235599 | Msa0340820:intron | 45.0% | |
| TACTGGTGGGACATCCTTTA+GGG | - | chr2_4:62235597-62235616 | None:intergenic | 45.0% | |
| ATACTGGTGGGACATCCTTT+AGG | - | chr2_4:62235598-62235617 | None:intergenic | 45.0% | |
| ! | GTAATTTTTCCTAGGGTGGG+GGG | + | chr2_4:62235700-62235719 | Msa0340820:intron | 45.0% |
| AATGCCGATGCCAACTATCT+AGG | + | chr2_4:62235753-62235772 | Msa0340820:CDS | 45.0% | |
| ATGCCGATGCCAACTATCTA+GGG | + | chr2_4:62235754-62235773 | Msa0340820:CDS | 45.0% | |
| AGCTATGCACCGCTCAAATA+TGG | + | chr2_4:62235866-62235885 | Msa0340820:CDS | 45.0% | |
| ACCGCTCAAATATGGACATG+AGG | + | chr2_4:62235874-62235893 | Msa0340820:CDS | 45.0% | |
| ATCTTGTCCCCTTGCACAAA+AGG | + | chr2_4:62235979-62235998 | Msa0340820:intron | 45.0% | |
| TCTTGTCCCCTTGCACAAAA+GGG | + | chr2_4:62235980-62235999 | Msa0340820:intron | 45.0% | |
| CATTTATCACCAGGTCACCT+GGG | - | chr2_4:62236043-62236062 | None:intergenic | 45.0% | |
| ACATTTATCACCAGGTCACC+TGG | - | chr2_4:62236044-62236063 | None:intergenic | 45.0% | |
| GTGACCTGGTGATAAATGTC+TGG | + | chr2_4:62236045-62236064 | Msa0340820:intron | 45.0% | |
| CTACCCAGACATTTATCACC+AGG | - | chr2_4:62236052-62236071 | None:intergenic | 45.0% | |
| AAGGCAGCAGAATCATACTG+AGG | - | chr2_4:62236213-62236232 | None:intergenic | 45.0% | |
| AATATAATCATGCGGGGGGA+AGG | + | chr2_4:62236326-62236345 | Msa0340820:intron | 45.0% | |
| !! | ATGATGATAGCGGCGAATCA+AGG | - | chr2_4:62236631-62236650 | None:intergenic | 45.0% |
| TTCGCCGCTATCATCATACA+AGG | + | chr2_4:62236634-62236653 | Msa0340820:CDS | 45.0% | |
| ACACCACACTTCGACTTATC+AGG | + | chr2_4:62236893-62236912 | Msa0340820:CDS | 45.0% | |
| AAGCCTGATAAGTCGAAGTG+TGG | - | chr2_4:62236899-62236918 | None:intergenic | 45.0% | |
| !! | TCTTGAAGTGCGTTGATTGC+AGG | - | chr2_4:62237046-62237065 | None:intergenic | 45.0% |
| ! | TAAACTTGCTTCACTCCCTC+TGG | - | chr2_4:62237491-62237510 | None:intergenic | 45.0% |
| AGAGGGAGTGAAGCAAGTTT+AGG | + | chr2_4:62237490-62237509 | Msa0340820:CDS | 45.0% | |
| TATGGGAGATGCAACTTGAC+GGG | - | chr2_4:62237539-62237558 | None:intergenic | 45.0% | |
| GTATGGGAGATGCAACTTGA+CGG | - | chr2_4:62237540-62237559 | None:intergenic | 45.0% | |
| ! | TCAAAGAGTGTAGCTAGTCC+TGG | + | chr2_4:62237619-62237638 | Msa0340820:CDS | 45.0% |
| CACCACTCACAATTGTACAC+AGG | - | chr2_4:62237839-62237858 | None:intergenic | 45.0% | |
| !! | AAAAAAATAAAGAAAAAATT+GGG | - | chr2_4:62232799-62232818 | None:intergenic | 5.0% |
| ! | CGTCGATCAGACCTTGTTTG+AGG | - | chr2_4:62232951-62232970 | None:intergenic | 50.0% |
| TCACAACTGCTTAAGCCGGT+AGG | + | chr2_4:62233453-62233472 | Msa0340820:intron | 50.0% | |
| ACACATGGGCCTGTTTGGAT+TGG | - | chr2_4:62233493-62233512 | None:intergenic | 50.0% | |
| GGAAGAACAACGAGGGTGAT+AGG | + | chr2_4:62233640-62233659 | Msa0340820:CDS | 50.0% | |
| ACTGTCCTGCCTTCACATGT+CGG | + | chr2_4:62233688-62233707 | Msa0340820:CDS | 50.0% | |
| ACATACCGACATGTGAAGGC+AGG | - | chr2_4:62233696-62233715 | None:intergenic | 50.0% | |
| ACTTGAGCACATGCCCTACA+TGG | + | chr2_4:62234520-62234539 | Msa0340820:intron | 50.0% | |
| AATCACCAGTGTCCTGCTCT+GGG | - | chr2_4:62235316-62235335 | None:intergenic | 50.0% | |
| ! | ACTGGTGATTCGAGAAGTGC+TGG | + | chr2_4:62235326-62235345 | Msa0340820:CDS | 50.0% |
| !! | GAGAAGTGCTGGTGCTAGTA+AGG | + | chr2_4:62235337-62235356 | Msa0340820:CDS | 50.0% |
| TGGGGGGAGATCTTCAGAAT+TGG | + | chr2_4:62235716-62235735 | Msa0340820:CDS | 50.0% | |
| GGGGGGAGATCTTCAGAATT+GGG | + | chr2_4:62235717-62235736 | Msa0340820:CDS | 50.0% | |
| GGGGGAGATCTTCAGAATTG+GGG | + | chr2_4:62235718-62235737 | Msa0340820:CDS | 50.0% | |
| GCTCCCTAGATAGTTGGCAT+CGG | - | chr2_4:62235760-62235779 | None:intergenic | 50.0% | |
| !! | CATCGCAGTTGATGATCCCA+TGG | + | chr2_4:62235821-62235840 | Msa0340820:CDS | 50.0% |
| ! | TGTGCTCCCTTTTGTGCAAG+GGG | - | chr2_4:62235989-62236008 | None:intergenic | 50.0% |
| ! | CTGTGCTCCCTTTTGTGCAA+GGG | - | chr2_4:62235990-62236009 | None:intergenic | 50.0% |
| ! | ACTGTGCTCCCTTTTGTGCA+AGG | - | chr2_4:62235991-62236010 | None:intergenic | 50.0% |
| ! | TTGCACAAAAGGGAGCACAG+TGG | + | chr2_4:62235990-62236009 | Msa0340820:intron | 50.0% |
| AAGGATGGCAGCACATGAAG+GGG | - | chr2_4:62236596-62236615 | None:intergenic | 50.0% | |
| CAAGGATGGCAGCACATGAA+GGG | - | chr2_4:62236597-62236616 | None:intergenic | 50.0% | |
| ACAAGGATGGCAGCACATGA+AGG | - | chr2_4:62236598-62236617 | None:intergenic | 50.0% | |
| GTGTGGTGTATGAAAGCGAG+TGG | - | chr2_4:62236882-62236901 | None:intergenic | 50.0% | |
| GAGTGAAGAAGCCAAGAGTC+TGG | + | chr2_4:62237447-62237466 | Msa0340820:CDS | 50.0% | |
| TGAAGAAGCCAAGAGTCTGG+AGG | + | chr2_4:62237450-62237469 | Msa0340820:CDS | 50.0% | |
| ATGGGAGATGCAACTTGACG+GGG | - | chr2_4:62237538-62237557 | None:intergenic | 50.0% | |
| GTTGCATCTCCCATACATCG+AGG | + | chr2_4:62237544-62237563 | Msa0340820:CDS | 50.0% | |
| CTCTGCGAGTTTCTTTGACG+AGG | - | chr2_4:62237580-62237599 | None:intergenic | 50.0% | |
| AGGTTGAAGAAGGAGGCGAG+AGG | + | chr2_4:62232554-62232573 | Msa0340820:five_prime_UTR | 55.0% | |
| GGTTGAAGAAGGAGGCGAGA+GGG | + | chr2_4:62232555-62232574 | Msa0340820:five_prime_UTR | 55.0% | |
| GGGGTGCATCTCCTCAAACA+AGG | + | chr2_4:62232937-62232956 | Msa0340820:CDS | 55.0% | |
| GAAGCAGCAGCCAACTGTTC+AGG | - | chr2_4:62232996-62233015 | None:intergenic | 55.0% | |
| CAACACGTGTCTAACACCGC+AGG | - | chr2_4:62233212-62233231 | None:intergenic | 55.0% | |
| ! | CTGCGGTGTTAGACACGTGT+TGG | + | chr2_4:62233210-62233229 | Msa0340820:intron | 55.0% |
| GAACAACGAGGGTGATAGGC+TGG | + | chr2_4:62233644-62233663 | Msa0340820:CDS | 55.0% | |
| GAATCACCAGTGTCCTGCTC+TGG | - | chr2_4:62235317-62235336 | None:intergenic | 55.0% | |
| AAAGCTCAACCCAGGTGACC+TGG | + | chr2_4:62236031-62236050 | Msa0340820:intron | 55.0% | |
| GGAACAGTGGAACTGTGCCA+AGG | - | chr2_4:62236251-62236270 | None:intergenic | 55.0% | |
| AGAAGCCAAGAGTCTGGAGG+CGG | + | chr2_4:62237453-62237472 | Msa0340820:CDS | 55.0% | |
| ACGGGGAGAAGCAACTAGAC+GGG | - | chr2_4:62237521-62237540 | None:intergenic | 55.0% | |
| GACGGGGAGAAGCAACTAGA+CGG | - | chr2_4:62237522-62237541 | None:intergenic | 55.0% | |
| GTGTAGCTAGTCCTGGTAGC+CGG | + | chr2_4:62237626-62237645 | Msa0340820:CDS | 55.0% | |
| CAAGGGAGATAGCCCAGAGC+AGG | + | chr2_4:62235301-62235320 | Msa0340820:CDS | 60.0% | |
| GATAGCCCAGAGCAGGACAC+TGG | + | chr2_4:62235308-62235327 | Msa0340820:CDS | 60.0% | |
| TGAAGATCTCCCCCCACCCT+AGG | - | chr2_4:62235712-62235731 | None:intergenic | 60.0% | |
| !! | TGCGGGGGGAAGGTATTGTG+TGG | + | chr2_4:62236336-62236355 | Msa0340820:intron | 60.0% |
| !! | CGGAGGCATCTACGTCCAGA+GGG | + | chr2_4:62237473-62237492 | Msa0340820:CDS | 60.0% |
| CGGGGAGAAGCAACTAGACG+GGG | - | chr2_4:62237520-62237539 | None:intergenic | 60.0% | |
| ! | CCTTTTCTGCTCCGGCTACC+AGG | - | chr2_4:62237640-62237659 | None:intergenic | 60.0% |
| CCTGGTAGCCGGAGCAGAAA+AGG | + | chr2_4:62237637-62237656 | Msa0340820:CDS | 60.0% | |
| AGAGACACGGGGCACGACAC+TGG | + | chr2_4:62233133-62233152 | Msa0340820:intron | 65.0% | |
| AGCCAAGAGTCTGGAGGCGG+AGG | + | chr2_4:62237456-62237475 | Msa0340820:CDS | 65.0% | |
| TGCCTCCGCCTCCAGACTCT+TGG | - | chr2_4:62237461-62237480 | None:intergenic | 65.0% | |
| !! | GCGGAGGCATCTACGTCCAG+AGG | + | chr2_4:62237472-62237491 | Msa0340820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 62232431 | 62237957 | 62232431 | ID=Msa0340820;Name=Msa0340820 |
| chr2_4 | mRNA | 62232431 | 62237957 | 62232431 | ID=Msa0340820-mRNA-1;Parent=Msa0340820;Name=Msa0340820-mRNA-1;_AED=0.14;_eAED=0.14;_QI=242|0.88|0.8|1|1|1|10|294|451 |
| chr2_4 | exon | 62232431 | 62232783 | 62232431 | ID=Msa0340820-mRNA-1:exon:19747;Parent=Msa0340820-mRNA-1 |
| chr2_4 | exon | 62232903 | 62233049 | 62232903 | ID=Msa0340820-mRNA-1:exon:19748;Parent=Msa0340820-mRNA-1 |
| chr2_4 | exon | 62233619 | 62233709 | 62233619 | ID=Msa0340820-mRNA-1:exon:19749;Parent=Msa0340820-mRNA-1 |
| chr2_4 | exon | 62234968 | 62235053 | 62234968 | ID=Msa0340820-mRNA-1:exon:19750;Parent=Msa0340820-mRNA-1 |
| chr2_4 | exon | 62235143 | 62235358 | 62235143 | ID=Msa0340820-mRNA-1:exon:19751;Parent=Msa0340820-mRNA-1 |
| chr2_4 | exon | 62235714 | 62235895 | 62235714 | ID=Msa0340820-mRNA-1:exon:19752;Parent=Msa0340820-mRNA-1 |
| chr2_4 | exon | 62236565 | 62236723 | 62236565 | ID=Msa0340820-mRNA-1:exon:19753;Parent=Msa0340820-mRNA-1 |
| chr2_4 | exon | 62236863 | 62236943 | 62236863 | ID=Msa0340820-mRNA-1:exon:19754;Parent=Msa0340820-mRNA-1 |
| chr2_4 | exon | 62237036 | 62237090 | 62237036 | ID=Msa0340820-mRNA-1:exon:19755;Parent=Msa0340820-mRNA-1 |
| chr2_4 | exon | 62237436 | 62237957 | 62237436 | ID=Msa0340820-mRNA-1:exon:19756;Parent=Msa0340820-mRNA-1 |
| chr2_4 | five_prime_UTR | 62232431 | 62232672 | 62232431 | ID=Msa0340820-mRNA-1:five_prime_utr;Parent=Msa0340820-mRNA-1 |
| chr2_4 | CDS | 62232673 | 62232783 | 62232673 | ID=Msa0340820-mRNA-1:cds;Parent=Msa0340820-mRNA-1 |
| chr2_4 | CDS | 62232903 | 62233049 | 62232903 | ID=Msa0340820-mRNA-1:cds;Parent=Msa0340820-mRNA-1 |
| chr2_4 | CDS | 62233619 | 62233709 | 62233619 | ID=Msa0340820-mRNA-1:cds;Parent=Msa0340820-mRNA-1 |
| chr2_4 | CDS | 62234968 | 62235053 | 62234968 | ID=Msa0340820-mRNA-1:cds;Parent=Msa0340820-mRNA-1 |
| chr2_4 | CDS | 62235143 | 62235358 | 62235143 | ID=Msa0340820-mRNA-1:cds;Parent=Msa0340820-mRNA-1 |
| chr2_4 | CDS | 62235714 | 62235895 | 62235714 | ID=Msa0340820-mRNA-1:cds;Parent=Msa0340820-mRNA-1 |
| chr2_4 | CDS | 62236565 | 62236723 | 62236565 | ID=Msa0340820-mRNA-1:cds;Parent=Msa0340820-mRNA-1 |
| chr2_4 | CDS | 62236863 | 62236943 | 62236863 | ID=Msa0340820-mRNA-1:cds;Parent=Msa0340820-mRNA-1 |
| chr2_4 | CDS | 62237036 | 62237090 | 62237036 | ID=Msa0340820-mRNA-1:cds;Parent=Msa0340820-mRNA-1 |
| chr2_4 | CDS | 62237436 | 62237663 | 62237436 | ID=Msa0340820-mRNA-1:cds;Parent=Msa0340820-mRNA-1 |
| chr2_4 | three_prime_UTR | 62237664 | 62237957 | 62237664 | ID=Msa0340820-mRNA-1:three_prime_utr;Parent=Msa0340820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
