Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0341170 | XP_024633262.1 | 59.184 | 98 | 34 | 3 | 44 | 136 | 132 | 228 | 2.23e-26 | 109 |
| Msa0341170 | XP_024633262.1 | 95.238 | 42 | 2 | 0 | 1 | 42 | 185 | 226 | 2.05e-17 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047280 | Msa0341170 | 0.801027 | 1.092980e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0341170 | MtrunA17_Chr2g0319901 | 59.184 | 98 | 34 | 3 | 44 | 136 | 132 | 228 | 2.05e-30 | 109 |
| Msa0341170 | MtrunA17_Chr2g0319901 | 95.238 | 42 | 2 | 0 | 1 | 42 | 185 | 226 | 1.89e-21 | 86.3 |
| Msa0341170 | MtrunA17_Chr2g0333201 | 55.670 | 97 | 37 | 3 | 45 | 136 | 142 | 237 | 4.88e-28 | 103 |
| Msa0341170 | MtrunA17_Chr2g0333201 | 88.636 | 44 | 5 | 0 | 1 | 44 | 194 | 237 | 5.82e-20 | 82.8 |
| Msa0341170 | MtrunA17_Chr2g0326101 | 51.064 | 94 | 37 | 3 | 45 | 130 | 371 | 463 | 2.24e-20 | 86.3 |
| Msa0341170 | MtrunA17_Chr2g0326101 | 82.051 | 39 | 7 | 0 | 1 | 39 | 426 | 464 | 1.16e-14 | 70.1 |
| Msa0341170 | MtrunA17_Chr2g0326101 | 48.387 | 93 | 34 | 5 | 45 | 125 | 138 | 228 | 4.57e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCTGAGTATAGATATTT+AGG | 0.119671 | 2_4:-62574812 | Msa0341170:CDS |
| TCTTTCACGTCCATGATAAT+TGG | 0.232048 | 2_4:+62574947 | None:intergenic |
| GCCATGACAGATCCCATATC+TGG | 0.311541 | 2_4:+62574869 | None:intergenic |
| GAAGCCCAGGTGTATGGATA+TGG | 0.323711 | 2_4:-62576545 | Msa0341170:CDS |
| TGAAAGTTGCTCAGCAGTTC+AGG | 0.329787 | 2_4:-62574895 | Msa0341170:CDS |
| GATCATAAGAGAGATGTTTA+TGG | 0.367070 | 2_4:-62577904 | Msa0341170:CDS |
| GCAGTTCAGGAAGCCAGATA+TGG | 0.383519 | 2_4:-62574882 | Msa0341170:CDS |
| TGCCTGAGTATAGATATTTA+GGG | 0.390213 | 2_4:-62574811 | Msa0341170:CDS |
| GCTGTTGAGCAGATTTAATA+AGG | 0.396807 | 2_4:+62577881 | None:intergenic |
| ATCATGAGAGATCCCACATC+TGG | 0.455269 | 2_4:+62577850 | None:intergenic |
| AAGAGATTTCGATTTCAGAA+AGG | 0.504331 | 2_4:-62576519 | Msa0341170:intron |
| TTAAATCTGCTCAACAGCTC+AGG | 0.504566 | 2_4:-62577876 | Msa0341170:CDS |
| CAGTTCAGGAAGCCAGATAT+GGG | 0.516112 | 2_4:-62574881 | Msa0341170:CDS |
| GGATGATGCTCCAATTATCA+TGG | 0.527818 | 2_4:-62574957 | Msa0341170:CDS |
| GATGAAGGCGCGGAAGCTGT+TGG | 0.548524 | 2_4:-62574839 | Msa0341170:CDS |
| GATGAAGGCGAGGAAACTGC+TGG | 0.553914 | 2_4:-62577820 | Msa0341170:CDS |
| CTCATGATAAAACAAGATGA+AGG | 0.567871 | 2_4:-62577835 | Msa0341170:CDS |
| GTCATGGCAAAACAAGATGA+AGG | 0.571769 | 2_4:-62574854 | Msa0341170:CDS |
| AACCCTAAATATCTATACTC+AGG | 0.572660 | 2_4:+62574809 | None:intergenic |
| ACAGCTCAGGATGCCAGATG+TGG | 0.575005 | 2_4:-62577863 | Msa0341170:CDS |
| TCAAGCCAGGAATGCTGACA+AGG | 0.586229 | 2_4:-62576582 | Msa0341170:intron |
| GCCAGATATGGGATCTGTCA+TGG | 0.596549 | 2_4:-62574870 | Msa0341170:CDS |
| TGCTCCAATTGTCATGGACG+TGG | 0.607242 | 2_4:-62577929 | None:intergenic |
| CAGCTCAGGATGCCAGATGT+GGG | 0.624884 | 2_4:-62577862 | Msa0341170:CDS |
| GGCAAAACAAGATGAAGGCG+CGG | 0.628027 | 2_4:-62574849 | Msa0341170:CDS |
| GATAAAACAAGATGAAGGCG+AGG | 0.636060 | 2_4:-62577830 | Msa0341170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAACAAATTTTATTTATT+AGG | + | chr2_4:62575109-62575128 | None:intergenic | 10.0% |
| !! | CAAATATATATAAATATTAG+GGG | - | chr2_4:62576975-62576994 | Msa0341170:intron | 10.0% |
| !! | AAATATTAAAATGTACTATT+TGG | - | chr2_4:62577270-62577289 | Msa0341170:intron | 10.0% |
| !!! | ATTTTTTTTTTCAATTAGTT+TGG | - | chr2_4:62577364-62577383 | Msa0341170:intron | 10.0% |
| !!! | TATTTCAATTTTTTTTTTTG+AGG | - | chr2_4:62577438-62577457 | Msa0341170:intron | 10.0% |
| !!! | ATTTCAATTTTTTTTTTTGA+GGG | - | chr2_4:62577439-62577458 | Msa0341170:intron | 10.0% |
| !!! | ATTAAATTAATGATATTTTC+AGG | + | chr2_4:62577617-62577636 | None:intergenic | 10.0% |
| !! | TTAAAAAAAAATGTTTGACT+CGG | - | chr2_4:62575131-62575150 | Msa0341170:intron | 15.0% |
| !! | TGTTTACATGATAAAATATT+AGG | + | chr2_4:62575592-62575611 | None:intergenic | 15.0% |
| !!! | AACAAATAGATATTTTTGTT+AGG | + | chr2_4:62576694-62576713 | None:intergenic | 15.0% |
| !! | AATCATATAAATCATATAGA+AGG | + | chr2_4:62576799-62576818 | None:intergenic | 15.0% |
| !! | AAGAAAATGAAAATATGAAA+TGG | + | chr2_4:62577031-62577050 | None:intergenic | 15.0% |
| !!! | ATTTTGAATAAATATGTTTG+TGG | - | chr2_4:62577405-62577424 | Msa0341170:intron | 15.0% |
| !!! | TTTTACTTTTTTAATTCAAG+AGG | - | chr2_4:62577722-62577741 | Msa0341170:intron | 15.0% |
| !! | AATTTGTCTTGGTTAAAAAA+CGG | - | chr2_4:62574946-62574965 | Msa0341170:CDS | 20.0% |
| !! | AGTAATATTCATTATTCTTG+CGG | + | chr2_4:62575366-62575385 | None:intergenic | 20.0% |
| !! | TAAGCATGAAACAAATTATT+GGG | + | chr2_4:62575530-62575549 | None:intergenic | 20.0% |
| !! | ATAAGCATGAAACAAATTAT+TGG | + | chr2_4:62575531-62575550 | None:intergenic | 20.0% |
| !! | GGTAAAACTTATATCAAAAT+AGG | + | chr2_4:62575571-62575590 | None:intergenic | 20.0% |
| !!! | ACTTGTTACAAAATAAACAT+AGG | + | chr2_4:62575629-62575648 | None:intergenic | 20.0% |
| !!! | ATGTTTATTTTGTAACAAGT+TGG | - | chr2_4:62575629-62575648 | Msa0341170:intron | 20.0% |
| !! | TTCATTTAAATGTTGTGTAA+GGG | + | chr2_4:62576071-62576090 | None:intergenic | 20.0% |
| !! | TTTCATTTAAATGTTGTGTA+AGG | + | chr2_4:62576072-62576091 | None:intergenic | 20.0% |
| !! | TTACACAACATTTAAATGAA+AGG | - | chr2_4:62576071-62576090 | Msa0341170:intron | 20.0% |
| !! | TAAAATAAATTACCAAGTAC+TGG | + | chr2_4:62576231-62576250 | None:intergenic | 20.0% |
| !! | AATTATTTGATACATAGCAA+TGG | - | chr2_4:62576319-62576338 | Msa0341170:intron | 20.0% |
| !! | TATAAATCGATATAAGATTC+TGG | + | chr2_4:62576517-62576536 | None:intergenic | 20.0% |
| !! | ATTTAGCATATATGCTTATT+TGG | - | chr2_4:62576816-62576835 | Msa0341170:intron | 20.0% |
| !! | ATCTAATAATTGTGAGAAAA+AGG | + | chr2_4:62576939-62576958 | None:intergenic | 20.0% |
| !!! | AATTTTTAATTGTGTAGAAG+TGG | - | chr2_4:62577152-62577171 | Msa0341170:intron | 20.0% |
| !!! | ATTTTTAATTGTGTAGAAGT+GGG | - | chr2_4:62577153-62577172 | Msa0341170:intron | 20.0% |
| !!! | GAAAGTAATTTGAAACAAAA+TGG | - | chr2_4:62577338-62577357 | Msa0341170:intron | 20.0% |
| !! | TTGGTTACAGAAAATTTATA+GGG | + | chr2_4:62577516-62577535 | None:intergenic | 20.0% |
| !! | ATTGGTTACAGAAAATTTAT+AGG | + | chr2_4:62577517-62577536 | None:intergenic | 20.0% |
| !! | TGAAAAAGAAACACTAAAAT+TGG | + | chr2_4:62577535-62577554 | None:intergenic | 20.0% |
| !!! | TTTTAATGAGCACAAATATT+AGG | - | chr2_4:62577636-62577655 | Msa0341170:intron | 20.0% |
| ! | ATTGCTTGAGTAAAGATATT+TGG | - | chr2_4:62574906-62574925 | Msa0341170:CDS | 25.0% |
| ! | TTGCTTGAGTAAAGATATTT+GGG | - | chr2_4:62574907-62574926 | Msa0341170:CDS | 25.0% |
| !!! | TTATTTTGAGATAACCTTTC+CGG | - | chr2_4:62575019-62575038 | Msa0341170:intron | 25.0% |
| ! | TGATTATTTCCGTTGTAATT+AGG | - | chr2_4:62575167-62575186 | Msa0341170:intron | 25.0% |
| ! | GATTATTTCCGTTGTAATTA+GGG | - | chr2_4:62575168-62575187 | Msa0341170:intron | 25.0% |
| ! | ATTATTTCCGTTGTAATTAG+GGG | - | chr2_4:62575169-62575188 | Msa0341170:intron | 25.0% |
| ! | TATTCTTGAGCTATGTAATT+GGG | + | chr2_4:62575403-62575422 | None:intergenic | 25.0% |
| ! | TTATTCTTGAGCTATGTAAT+TGG | + | chr2_4:62575404-62575423 | None:intergenic | 25.0% |
| ! | AAAGAAAACAAATTCATCAC+TGG | + | chr2_4:62575503-62575522 | None:intergenic | 25.0% |
| !! | AATTTTCCTCATCCATTAAA+TGG | - | chr2_4:62575864-62575883 | Msa0341170:intron | 25.0% |
| ! | CTAGTTGAAAAACCATTTAA+TGG | + | chr2_4:62575879-62575898 | None:intergenic | 25.0% |
| ! | TTATTAGAATCAGGATGAAA+GGG | - | chr2_4:62576204-62576223 | Msa0341170:intron | 25.0% |
| ! | AGAAAAAATGACAAACAATC+TGG | + | chr2_4:62576263-62576282 | None:intergenic | 25.0% |
| ! | AAATAATGAGGCTAAACATA+TGG | + | chr2_4:62576359-62576378 | None:intergenic | 25.0% |
| !! | TATTTCTTAGGTTGTCAATT+TGG | - | chr2_4:62576374-62576393 | Msa0341170:intron | 25.0% |
| !! | ATTTCTTAGGTTGTCAATTT+GGG | - | chr2_4:62576375-62576394 | Msa0341170:intron | 25.0% |
| !!! | TTTTTTGTCCAACGAAAAAT+GGG | - | chr2_4:62576640-62576659 | Msa0341170:intron | 25.0% |
| ! | ATAGACTGAATTTACAAAAC+TGG | + | chr2_4:62576745-62576764 | None:intergenic | 25.0% |
| !! | GTTCTTGTTTACATAATTAC+AGG | - | chr2_4:62576838-62576857 | Msa0341170:intron | 25.0% |
| ! | ATATATTTGAACCACGTATT+TGG | + | chr2_4:62576964-62576983 | None:intergenic | 25.0% |
| ! | TATATATAAATATTAGGGGC+TGG | - | chr2_4:62576979-62576998 | Msa0341170:intron | 25.0% |
| !!! | TTTTTAATTGTGTAGAAGTG+GGG | - | chr2_4:62577154-62577173 | Msa0341170:intron | 25.0% |
| ! | ATATTGCATATTATATGCAG+GGG | + | chr2_4:62577201-62577220 | None:intergenic | 25.0% |
| ! | GATATTGCATATTATATGCA+GGG | + | chr2_4:62577202-62577221 | None:intergenic | 25.0% |
| !!! | TGATATTTTCAGGTTTTTCA+AGG | + | chr2_4:62577607-62577626 | None:intergenic | 25.0% |
| GATCATAAGAGAGATGTTTA+TGG | - | chr2_4:62574796-62574815 | Msa0341170:CDS | 30.0% | |
| CTCATGATAAAACAAGATGA+AGG | - | chr2_4:62574865-62574884 | Msa0341170:CDS | 30.0% | |
| TGCTTGAGTAAAGATATTTG+GGG | - | chr2_4:62574908-62574927 | Msa0341170:CDS | 30.0% | |
| CTACTTTCCTATAAGTCTTT+GGG | - | chr2_4:62575067-62575086 | Msa0341170:intron | 30.0% | |
| TATTCATTATTCTTGCGGTT+TGG | + | chr2_4:62575361-62575380 | None:intergenic | 30.0% | |
| GGAATTATAATCGAATCTGA+TGG | + | chr2_4:62575457-62575476 | None:intergenic | 30.0% | |
| ATGAATTGAAAGAGATGGAA+AGG | + | chr2_4:62575478-62575497 | None:intergenic | 30.0% | |
| TGGAAATGAATTGAAAGAGA+TGG | + | chr2_4:62575483-62575502 | None:intergenic | 30.0% | |
| ATGAGGAAAATTACAACTAG+GGG | + | chr2_4:62575856-62575875 | None:intergenic | 30.0% | |
| GATGAGGAAAATTACAACTA+GGG | + | chr2_4:62575857-62575876 | None:intergenic | 30.0% | |
| ! | GAAAAACCATTTAATGGATG+AGG | + | chr2_4:62575873-62575892 | None:intergenic | 30.0% |
| AAGAAATTAACAGTCCAACT+AGG | - | chr2_4:62576019-62576038 | Msa0341170:intron | 30.0% | |
| !! | ATGAAAGGCATCTTTGAATA+TGG | - | chr2_4:62576086-62576105 | Msa0341170:intron | 30.0% |
| AAGAGATTTCGATTTCAGAA+AGG | - | chr2_4:62576181-62576200 | Msa0341170:intron | 30.0% | |
| TCAGAAAGGTTATTAGAATC+AGG | - | chr2_4:62576195-62576214 | Msa0341170:intron | 30.0% | |
| GTTATTAGAATCAGGATGAA+AGG | - | chr2_4:62576203-62576222 | Msa0341170:intron | 30.0% | |
| ! | GTTTAGCCTCATTATTTCTT+AGG | - | chr2_4:62576362-62576381 | Msa0341170:intron | 30.0% |
| TGACAACCTAAGAAATAATG+AGG | + | chr2_4:62576371-62576390 | None:intergenic | 30.0% | |
| GGTTAAGTGCATAAATTATG+TGG | + | chr2_4:62576412-62576431 | None:intergenic | 30.0% | |
| ! | GCACAAGTTGAAGAAAATAT+GGG | + | chr2_4:62576444-62576463 | None:intergenic | 30.0% |
| ! | AGCACAAGTTGAAGAAAATA+TGG | + | chr2_4:62576445-62576464 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTCCAACGAAAAA+TGG | - | chr2_4:62576639-62576658 | Msa0341170:intron | 30.0% |
| CCAAGAATCAAGGTAATTAA+AGG | + | chr2_4:62576772-62576791 | None:intergenic | 30.0% | |
| CCTTTAATTACCTTGATTCT+TGG | - | chr2_4:62576769-62576788 | Msa0341170:intron | 30.0% | |
| TTATTAGATGACCAAATACG+TGG | - | chr2_4:62576950-62576969 | Msa0341170:intron | 30.0% | |
| GGATATTGCATATTATATGC+AGG | + | chr2_4:62577203-62577222 | None:intergenic | 30.0% | |
| TTGCCTGAGTATAGATATTT+AGG | - | chr2_4:62577888-62577907 | Msa0341170:CDS | 30.0% | |
| TGCCTGAGTATAGATATTTA+GGG | - | chr2_4:62577889-62577908 | Msa0341170:CDS | 30.0% | |
| AACCCTAAATATCTATACTC+AGG | + | chr2_4:62577894-62577913 | None:intergenic | 30.0% | |
| GCTGTTGAGCAGATTTAATA+AGG | + | chr2_4:62574822-62574841 | None:intergenic | 35.0% | |
| GCTTGAGTAAAGATATTTGG+GGG | - | chr2_4:62574909-62574928 | Msa0341170:CDS | 35.0% | |
| CTTGAGTAAAGATATTTGGG+GGG | - | chr2_4:62574910-62574929 | Msa0341170:CDS | 35.0% | |
| GTGGTGAAATCAATTTGTCT+TGG | - | chr2_4:62574935-62574954 | Msa0341170:CDS | 35.0% | |
| ! | GCTACTTTCCTATAAGTCTT+TGG | - | chr2_4:62575066-62575085 | Msa0341170:intron | 35.0% |
| !! | ATGTTTGACTCGGTTCAAAT+TGG | - | chr2_4:62575141-62575160 | Msa0341170:intron | 35.0% |
| TTGAACACCCCTAATTACAA+CGG | + | chr2_4:62575179-62575198 | None:intergenic | 35.0% | |
| !!! | GTTTTTCTATTGGGTTGGTT+CGG | + | chr2_4:62575204-62575223 | None:intergenic | 35.0% |
| !! | TGGTTTGCGGTTTTTCTATT+GGG | + | chr2_4:62575213-62575232 | None:intergenic | 35.0% |
| !!! | TTGGTTTGCGGTTTTTCTAT+TGG | + | chr2_4:62575214-62575233 | None:intergenic | 35.0% |
| !! | ATTATTCTTGCGGTTTGGTT+TGG | + | chr2_4:62575356-62575375 | None:intergenic | 35.0% |
| ! | AGATAAAAAAGCATGCGGTT+TGG | + | chr2_4:62575780-62575799 | None:intergenic | 35.0% |
| GGATGAGGAAAATTACAACT+AGG | + | chr2_4:62575858-62575877 | None:intergenic | 35.0% | |
| ! | TTTTCCATATCCATACACCT+GGG | + | chr2_4:62576162-62576181 | None:intergenic | 35.0% |
| ! | TTTTTCCATATCCATACACC+TGG | + | chr2_4:62576163-62576182 | None:intergenic | 35.0% |
| TGAGGCTAAACATATGGTAA+GGG | + | chr2_4:62576353-62576372 | None:intergenic | 35.0% | |
| ATGAGGCTAAACATATGGTA+AGG | + | chr2_4:62576354-62576373 | None:intergenic | 35.0% | |
| AGAAAATATGGGTCGAAGAA+TGG | + | chr2_4:62576433-62576452 | None:intergenic | 35.0% | |
| AGTTGAAACAGAGAAGGATA+GGG | + | chr2_4:62576543-62576562 | None:intergenic | 35.0% | |
| AACTCAATTGAACGTTCCAT+AGG | + | chr2_4:62576622-62576641 | None:intergenic | 35.0% | |
| AAAAATGGGATAAGGCTAGT+GGG | - | chr2_4:62576654-62576673 | Msa0341170:intron | 35.0% | |
| AGAAGGTTATCCAAGAATCA+AGG | + | chr2_4:62576782-62576801 | None:intergenic | 35.0% | |
| ! | TATAAATATTAGGGGCTGGT+TGG | - | chr2_4:62576983-62577002 | Msa0341170:intron | 35.0% |
| !!! | TTTTTTGTCAAGTAGCCTAG+TGG | - | chr2_4:62577116-62577135 | Msa0341170:intron | 35.0% |
| TGAGTTTATCTCAGTTGCTA+GGG | + | chr2_4:62577224-62577243 | None:intergenic | 35.0% | |
| TCTTTCACGTCCATGATAAT+TGG | + | chr2_4:62577756-62577775 | None:intergenic | 35.0% | |
| TTAAATCTGCTCAACAGCTC+AGG | - | chr2_4:62574824-62574843 | Msa0341170:CDS | 40.0% | |
| GATAAAACAAGATGAAGGCG+AGG | - | chr2_4:62574870-62574889 | Msa0341170:CDS | 40.0% | |
| TAAAGATATTTGGGGGGAAG+TGG | - | chr2_4:62574916-62574935 | Msa0341170:CDS | 40.0% | |
| GTACGTACCCAAAGACTTAT+AGG | + | chr2_4:62575077-62575096 | None:intergenic | 40.0% | |
| !! | TTTGACTCGGTTCAAATTGG+TGG | - | chr2_4:62575144-62575163 | Msa0341170:intron | 40.0% |
| ! | TTGCGGTTTTTCTATTGGGT+TGG | + | chr2_4:62575209-62575228 | None:intergenic | 40.0% |
| !! | GTTTGGATTGGTTTGGTTTG+CGG | + | chr2_4:62575226-62575245 | None:intergenic | 40.0% |
| !! | TTGGATTGGTTCAGTTTGTG+CGG | + | chr2_4:62575698-62575717 | None:intergenic | 40.0% |
| CAAACCAAACCAAACCAATG+CGG | + | chr2_4:62575722-62575741 | None:intergenic | 40.0% | |
| !! | TGGTTTGGTTTGGTTTGGTT+TGG | - | chr2_4:62575725-62575744 | Msa0341170:intron | 40.0% |
| !! | AAAAAGCATGCGGTTTGGTT+TGG | + | chr2_4:62575775-62575794 | None:intergenic | 40.0% |
| !!! | TGCTTTTTTATCTCGCGGTT+TGG | - | chr2_4:62575787-62575806 | Msa0341170:intron | 40.0% |
| TATTTGCGTTGCTTCCTAGT+TGG | + | chr2_4:62576036-62576055 | None:intergenic | 40.0% | |
| ATGGTGAAAACTTTCAAGCC+AGG | - | chr2_4:62576105-62576124 | Msa0341170:intron | 40.0% | |
| ATATTCCTTGTCAGCATTCC+TGG | + | chr2_4:62576126-62576145 | None:intergenic | 40.0% | |
| !!! | ATATGCAACTTTTGAAGCCC+AGG | - | chr2_4:62576142-62576161 | Msa0341170:intron | 40.0% |
| AGGCTAAACATATGGTAAGG+GGG | + | chr2_4:62576351-62576370 | None:intergenic | 40.0% | |
| GAGGCTAAACATATGGTAAG+GGG | + | chr2_4:62576352-62576371 | None:intergenic | 40.0% | |
| GAGTTGAAACAGAGAAGGAT+AGG | + | chr2_4:62576544-62576563 | None:intergenic | 40.0% | |
| GCTAAGAGTTGAAACAGAGA+AGG | + | chr2_4:62576549-62576568 | None:intergenic | 40.0% | |
| ! | TTGCATGCTTTTGTGTCCTA+TGG | - | chr2_4:62576603-62576622 | Msa0341170:intron | 40.0% |
| GTCCAACGAAAAATGGGATA+AGG | - | chr2_4:62576646-62576665 | Msa0341170:intron | 40.0% | |
| !! | AGCCTTATCCCATTTTTCGT+TGG | + | chr2_4:62576651-62576670 | None:intergenic | 40.0% |
| GAAAAATGGGATAAGGCTAG+TGG | - | chr2_4:62576653-62576672 | Msa0341170:intron | 40.0% | |
| AAAATGGGATAAGGCTAGTG+GGG | - | chr2_4:62576655-62576674 | Msa0341170:intron | 40.0% | |
| CTTGCTTCTTTCAGATACGT+TGG | - | chr2_4:62576874-62576893 | Msa0341170:intron | 40.0% | |
| GTGAGTTTATCTCAGTTGCT+AGG | + | chr2_4:62577225-62577244 | None:intergenic | 40.0% | |
| GGATGATGCTCCAATTATCA+TGG | - | chr2_4:62577743-62577762 | Msa0341170:intron | 40.0% | |
| GTCATGGCAAAACAAGATGA+AGG | - | chr2_4:62577846-62577865 | Msa0341170:CDS | 40.0% | |
| ATCATGAGAGATCCCACATC+TGG | + | chr2_4:62574853-62574872 | None:intergenic | 45.0% | |
| ! | ACCTTTCCGGCTCGTTTAAT+TGG | - | chr2_4:62575032-62575051 | Msa0341170:intron | 45.0% |
| ! | CCTTTCCGGCTCGTTTAATT+GGG | - | chr2_4:62575033-62575052 | Msa0341170:intron | 45.0% |
| ! | CTTTCCGGCTCGTTTAATTG+GGG | - | chr2_4:62575034-62575053 | Msa0341170:intron | 45.0% |
| ! | CGTTTAATTGGGGTGGACTT+TGG | - | chr2_4:62575044-62575063 | Msa0341170:intron | 45.0% |
| !! | GGTTTCGGTTTGGATTGGTT+TGG | + | chr2_4:62575233-62575252 | None:intergenic | 45.0% |
| !! | TTTGCGGTTTCGGTTTGGAT+TGG | + | chr2_4:62575238-62575257 | None:intergenic | 45.0% |
| !!! | GGTTTTTTGCGGTTTCGGTT+TGG | + | chr2_4:62575243-62575262 | None:intergenic | 45.0% |
| !!! | AGTGCGGTTTTTTGCGGTTT+CGG | + | chr2_4:62575248-62575267 | None:intergenic | 45.0% |
| AAACCGCAAAAAACCGCACT+TGG | - | chr2_4:62575248-62575267 | Msa0341170:intron | 45.0% | |
| !!! | GAACCAAGTGCGGTTTTTTG+CGG | + | chr2_4:62575254-62575273 | None:intergenic | 45.0% |
| GCAAAAAACCGCACTTGGTT+CGG | - | chr2_4:62575253-62575272 | Msa0341170:intron | 45.0% | |
| GAATTCATCCGAACCAAGTG+CGG | + | chr2_4:62575264-62575283 | None:intergenic | 45.0% | |
| !! | GCACTTGGTTCGGATGAATT+CGG | - | chr2_4:62575263-62575282 | Msa0341170:intron | 45.0% |
| !! | CGGTTTGGTTTGGTTTGGTT+CGG | + | chr2_4:62575346-62575365 | None:intergenic | 45.0% |
| !! | TCTTGCGGTTTGGTTTGGTT+TGG | + | chr2_4:62575351-62575370 | None:intergenic | 45.0% |
| TGAACCAATCCAAACCGCAT+TGG | - | chr2_4:62575705-62575724 | Msa0341170:intron | 45.0% | |
| ! | CAAACCAATGCGGTTTGGAT+TGG | + | chr2_4:62575712-62575731 | None:intergenic | 45.0% |
| !! | CAATCCAAACCGCATTGGTT+TGG | - | chr2_4:62575710-62575729 | Msa0341170:intron | 45.0% |
| CAAACCAAACCAATGCGGTT+TGG | + | chr2_4:62575717-62575736 | None:intergenic | 45.0% | |
| !! | CAAACCGCATTGGTTTGGTT+TGG | - | chr2_4:62575715-62575734 | Msa0341170:intron | 45.0% |
| !! | CGCATTGGTTTGGTTTGGTT+TGG | - | chr2_4:62575720-62575739 | Msa0341170:intron | 45.0% |
| ! | CCGCGAGATAAAAAAGCATG+CGG | + | chr2_4:62575785-62575804 | None:intergenic | 45.0% |
| !!! | CCGCATGCTTTTTTATCTCG+CGG | - | chr2_4:62575782-62575801 | Msa0341170:intron | 45.0% |
| !! | ATTACAACTAGGGGTGTTCG+CGG | + | chr2_4:62575847-62575866 | None:intergenic | 45.0% |
| !!! | ACTTTTGAAGCCCAGGTGTA+TGG | - | chr2_4:62576149-62576168 | Msa0341170:intron | 45.0% |
| CTAAACATATGGTAAGGGGG+TGG | + | chr2_4:62576348-62576367 | None:intergenic | 45.0% | |
| AAACTGTTTAGTGACCGGTG+GGG | + | chr2_4:62576475-62576494 | None:intergenic | 45.0% | |
| CAAACTGTTTAGTGACCGGT+GGG | + | chr2_4:62576476-62576495 | None:intergenic | 45.0% | |
| CTGCCAAACTGTTTAGTGAC+CGG | + | chr2_4:62576480-62576499 | None:intergenic | 45.0% | |
| ATTCTACTACCACCAACGAG+TGG | + | chr2_4:62576584-62576603 | None:intergenic | 45.0% | |
| CATATTATATGCAGGGGCCA+GGG | + | chr2_4:62577195-62577214 | None:intergenic | 45.0% | |
| GCAACTGAGATAAACTCACG+AGG | - | chr2_4:62577226-62577245 | Msa0341170:intron | 45.0% | |
| TGAAAGTTGCTCAGCAGTTC+AGG | - | chr2_4:62577805-62577824 | Msa0341170:intron | 45.0% | |
| CAGTTCAGGAAGCCAGATAT+GGG | - | chr2_4:62577819-62577838 | Msa0341170:CDS | 45.0% | |
| !! | TTCAAATATATATAAATATT+AGG | - | chr2_4:62576973-62576992 | Msa0341170:intron | 5.0% |
| !! | TCAAATATATATAAATATTA+GGG | - | chr2_4:62576974-62576993 | Msa0341170:intron | 5.0% |
| CCCAATTAAACGAGCCGGAA+AGG | + | chr2_4:62575036-62575055 | None:intergenic | 50.0% | |
| TCCACCCCAATTAAACGAGC+CGG | + | chr2_4:62575041-62575060 | None:intergenic | 50.0% | |
| ! | TCGAATCTGATGGTGCACGA+TGG | + | chr2_4:62575447-62575466 | None:intergenic | 50.0% |
| !! | GCATGCGGTTTGGTTTGGTT+TGG | + | chr2_4:62575770-62575789 | None:intergenic | 50.0% |
| TCAAGCCAGGAATGCTGACA+AGG | - | chr2_4:62576118-62576137 | Msa0341170:intron | 50.0% | |
| GAAGCCCAGGTGTATGGATA+TGG | - | chr2_4:62576155-62576174 | Msa0341170:intron | 50.0% | |
| GGATGAAAGGGACCAGTACT+TGG | - | chr2_4:62576216-62576235 | Msa0341170:intron | 50.0% | |
| CCAAACTGTTTAGTGACCGG+TGG | + | chr2_4:62576477-62576496 | None:intergenic | 50.0% | |
| CCACCGGTCACTAAACAGTT+TGG | - | chr2_4:62576474-62576493 | Msa0341170:intron | 50.0% | |
| TTCCTCTCCATTCCACTCGT+TGG | - | chr2_4:62576569-62576588 | Msa0341170:CDS | 50.0% | |
| ACTACCACCAACGAGTGGAA+TGG | + | chr2_4:62576579-62576598 | None:intergenic | 50.0% | |
| TCTCATGCAGCTGGTAAGTG+AGG | - | chr2_4:62576900-62576919 | Msa0341170:intron | 50.0% | |
| ! | TTGTGTGAGCTCTAGCCACT+AGG | + | chr2_4:62577134-62577153 | None:intergenic | 50.0% |
| ! | TTGTGTAGAAGTGGGGTGTC+CGG | - | chr2_4:62577161-62577180 | Msa0341170:intron | 50.0% |
| GCATATTATATGCAGGGGCC+AGG | + | chr2_4:62577196-62577215 | None:intergenic | 50.0% | |
| GCAGTTCAGGAAGCCAGATA+TGG | - | chr2_4:62577818-62577837 | Msa0341170:CDS | 50.0% | |
| GCCAGATATGGGATCTGTCA+TGG | - | chr2_4:62577830-62577849 | Msa0341170:CDS | 50.0% | |
| GCCATGACAGATCCCATATC+TGG | + | chr2_4:62577834-62577853 | None:intergenic | 50.0% | |
| GGCAAAACAAGATGAAGGCG+CGG | - | chr2_4:62577851-62577870 | Msa0341170:CDS | 50.0% | |
| ACAGCTCAGGATGCCAGATG+TGG | - | chr2_4:62574837-62574856 | Msa0341170:CDS | 55.0% | |
| CAGCTCAGGATGCCAGATGT+GGG | - | chr2_4:62574838-62574857 | Msa0341170:CDS | 55.0% | |
| GATGAAGGCGAGGAAACTGC+TGG | - | chr2_4:62574880-62574899 | Msa0341170:CDS | 55.0% | |
| ! | TCCGGCTCGTTTAATTGGGG+TGG | - | chr2_4:62575037-62575056 | Msa0341170:intron | 55.0% |
| ! | GACTTTTGCACTGAACCGCG+CGG | - | chr2_4:62575288-62575307 | Msa0341170:intron | 55.0% |
| GCAAATCGAACCAAACCGCG+CGG | + | chr2_4:62575306-62575325 | None:intergenic | 55.0% | |
| !! | GCGCGGTTTGGTTCGATTTG+CGG | - | chr2_4:62575305-62575324 | Msa0341170:intron | 55.0% |
| TTGTGCTCAACCTTCCCCAC+CGG | - | chr2_4:62576458-62576477 | Msa0341170:intron | 55.0% | |
| TGTTTAGTGACCGGTGGGGA+AGG | + | chr2_4:62576471-62576490 | None:intergenic | 55.0% | |
| CACCAACGAGTGGAATGGAG+AGG | + | chr2_4:62576574-62576593 | None:intergenic | 55.0% | |
| CTCTCCATTCCACTCGTTGG+TGG | - | chr2_4:62576572-62576591 | Msa0341170:CDS | 55.0% | |
| ! | TGTGTAGAAGTGGGGTGTCC+GGG | - | chr2_4:62577162-62577181 | Msa0341170:intron | 55.0% |
| TTGCACTGAACCGCGCGGTT+TGG | - | chr2_4:62575293-62575312 | Msa0341170:intron | 60.0% | |
| !! | GTTCGCGGTGCGGTTTGGTT+CGG | + | chr2_4:62575832-62575851 | None:intergenic | 60.0% |
| !! | AACTAGGGGTGTTCGCGGTG+CGG | + | chr2_4:62575842-62575861 | None:intergenic | 60.0% |
| CGTTGGCACTCTCATGCAGC+TGG | - | chr2_4:62576891-62576910 | Msa0341170:intron | 60.0% | |
| ! | GTGTAGAAGTGGGGTGTCCG+GGG | - | chr2_4:62577163-62577182 | Msa0341170:intron | 60.0% |
| ! | GATGAAGGCGCGGAAGCTGT+TGG | - | chr2_4:62577861-62577880 | Msa0341170:CDS | 60.0% |
| ! | GGGGTGTTCGCGGTGCGGTT+TGG | + | chr2_4:62575837-62575856 | None:intergenic | 70.0% |
| GGTGTCCGGGGTTCGAACCC+TGG | - | chr2_4:62577175-62577194 | Msa0341170:intron | 70.0% | |
| AGGGGCCAGGGTTCGAACCC+CGG | + | chr2_4:62577183-62577202 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 62574784 | 62577938 | 62574784 | ID=Msa0341170;Name=Msa0341170 |
| chr2_4 | mRNA | 62574784 | 62577938 | 62574784 | ID=Msa0341170-mRNA-1;Parent=Msa0341170;Name=Msa0341170-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|0.5|0|3|0|149 |
| chr2_4 | exon | 62577808 | 62577938 | 62577808 | ID=Msa0341170-mRNA-1:exon:19948;Parent=Msa0341170-mRNA-1 |
| chr2_4 | exon | 62576520 | 62576595 | 62576520 | ID=Msa0341170-mRNA-1:exon:19947;Parent=Msa0341170-mRNA-1 |
| chr2_4 | exon | 62574784 | 62575026 | 62574784 | ID=Msa0341170-mRNA-1:exon:19946;Parent=Msa0341170-mRNA-1 |
| chr2_4 | CDS | 62577808 | 62577938 | 62577808 | ID=Msa0341170-mRNA-1:cds;Parent=Msa0341170-mRNA-1 |
| chr2_4 | CDS | 62576520 | 62576595 | 62576520 | ID=Msa0341170-mRNA-1:cds;Parent=Msa0341170-mRNA-1 |
| chr2_4 | CDS | 62574784 | 62575026 | 62574784 | ID=Msa0341170-mRNA-1:cds;Parent=Msa0341170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
