AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0341700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341700 MtrunA17_Chr2g0334071 100.000 57 0 0 82 138 1 57 6.99e-36 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 198 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACAAATTTATGCATATT+TGG 0.139534 2_4:-63556826 Msa0341700:five_prime_UTR
TACTCTCACAAATTATATTT+TGG 0.159975 2_4:+63554717 None:intergenic
AGCGCAAGCAACTGCCTTTC+TGG 0.190152 2_4:-63555449 Msa0341700:five_prime_UTR
AAATAGAACAATGACATTTC+TGG 0.223530 2_4:-63554496 Msa0341700:five_prime_UTR
CTCCTATATATGTGCTATTA+TGG 0.225343 2_4:-63554426 Msa0341700:five_prime_UTR
TAATACTTTACAAATAAAAT+TGG 0.235179 2_4:-63555344 Msa0341700:five_prime_UTR
ATTGGAACTTAACCCGAATT+AGG 0.246617 2_4:+63554986 None:intergenic
TAGTTTGATTTCCCATGTTC+TGG 0.267157 2_4:-63553656 Msa0341700:three_prime_UTR
GCTGCAGACGGTCCCAATTC+AGG 0.274322 2_4:+63554290 None:intergenic
TAATGGAACAGGTGCCAATT+TGG 0.279667 2_4:+63553791 None:intergenic
TTATGTGAACCTTCCTAATT+CGG 0.280390 2_4:-63554999 Msa0341700:five_prime_UTR
CACAACAGCTTTAACCAAAT+TGG 0.282805 2_4:-63553805 Msa0341700:CDS
AAGGCAGTTGCTTGCGCTTA+TGG 0.292633 2_4:+63555454 None:intergenic
AGACTTTATCACCCCTGAAT+TGG 0.303446 2_4:-63554303 Msa0341700:five_prime_UTR
AGTTTATTTCGCTTGCTAGT+TGG 0.307097 2_4:-63553503 Msa0341700:three_prime_UTR
TTTCGCTTGCTAGTTGGGTT+TGG 0.308227 2_4:-63553497 Msa0341700:three_prime_UTR
TTCGCTTGCTAGTTGGGTTT+GGG 0.308772 2_4:-63553496 Msa0341700:three_prime_UTR
GCAGTAACTATTCCTCAAAA+TGG 0.310904 2_4:+63555148 None:intergenic
ACCTCTCCTTCTGATCCTAA+TGG 0.312323 2_4:+63553774 None:intergenic
AGCATTGCAGTGCTAGTTCT+TGG 0.316398 2_4:-63555285 Msa0341700:five_prime_UTR
GCTGGAGCTGCTACCGGCAC+TGG 0.325350 2_4:-63554080 Msa0341700:CDS
GGACCGTCTGCAGCTTCATC+TGG 0.330349 2_4:-63554281 Msa0341700:five_prime_UTR
ACCTTGTGTTGTGTGTTAAA+AGG 0.330666 2_4:-63555067 Msa0341700:five_prime_UTR
CAATCTATGTGCTGCTGTCT+AGG 0.336885 2_4:+63554366 None:intergenic
GTTTATTTCGCTTGCTAGTT+GGG 0.346701 2_4:-63553502 Msa0341700:three_prime_UTR
AGATACTTCACCAAGACTTA+TGG 0.347208 2_4:+63554834 None:intergenic
AAGGGCAAGGGCAAGGGCAG+GGG 0.349176 2_4:-63556925 Msa0341700:five_prime_UTR
GCAGCTTCATCTGGATTTGT+AGG 0.349857 2_4:-63554272 Msa0341700:five_prime_UTR
GAGTTAGTCTTGTAAGTTGC+AGG 0.351307 2_4:-63554571 Msa0341700:five_prime_UTR
TATGTGAACCTTCCTAATTC+GGG 0.363085 2_4:-63554998 Msa0341700:five_prime_UTR
GCTGGAGCTGGTACGGCAAC+TGG 0.363344 2_4:-63554164 Msa0341700:five_prime_UTR
CAAGGGCAAGGGCAGGGGCA+TGG 0.366059 2_4:-63556920 Msa0341700:five_prime_UTR
CCCGGCCCTGGAGCTGGAGC+TGG 0.367306 2_4:-63554212 Msa0341700:five_prime_UTR
CACATAAATCAAGAGATATA+AGG 0.370389 2_4:+63555015 None:intergenic
GCTGCAGCAGGTACGGCTAT+TGG 0.372360 2_4:-63554134 Msa0341700:five_prime_UTR
TCAAAACAGGTTATAGATAA+GGG 0.373172 2_4:-63553417 Msa0341700:three_prime_UTR
TAAAGTATTAAATTTGTGTT+TGG 0.378924 2_4:+63555357 None:intergenic
ACCGGCACTGGGGACTTTAC+TGG 0.380008 2_4:-63554068 Msa0341700:CDS
GACTTTATCACCCCTGAATT+GGG 0.384717 2_4:-63554302 Msa0341700:five_prime_UTR
AACTGCTGTATGCAGGGTAT+TGG 0.392302 2_4:-63553458 Msa0341700:three_prime_UTR
ATTGCGAGGAAGCTTTAGTA+TGG 0.392622 2_4:+63555400 None:intergenic
GCAAGGGCAAGGGCAAGGGC+AGG 0.392948 2_4:-63556927 Msa0341700:five_prime_UTR
ACAGGCACTGGAACTATAAC+TGG 0.393725 2_4:-63553990 Msa0341700:CDS
AAATTGGCACCTGTTCCATT+AGG 0.394123 2_4:-63553789 Msa0341700:CDS
GATATTCCCGGCCCTGGAGC+TGG 0.394266 2_4:-63554218 Msa0341700:five_prime_UTR
ATTAATCATATAGGATATAT+AGG 0.394860 2_4:-63554890 Msa0341700:five_prime_UTR
CTGGAGCTGCTACCGGCACT+GGG 0.395926 2_4:-63554079 Msa0341700:CDS
GAAGCTCCAGCTCCAGCTCC+AGG 0.398532 2_4:+63554206 None:intergenic
TGCTACTAGCGGCACTGGCC+TGG 0.402795 2_4:-63556976 Msa0341700:five_prime_UTR
GTACATGTGAGAAAGATAAA+AGG 0.406565 2_4:+63557063 None:intergenic
TATATTAACAAAATCATATG+AGG 0.406749 2_4:-63555244 Msa0341700:five_prime_UTR
GACTTTACTGGTACTGGAAC+TGG 0.406809 2_4:-63554056 Msa0341700:CDS
TGTGAAAATCACTTTCTGTA+AGG 0.411240 2_4:-63554954 Msa0341700:five_prime_UTR
ACAGCAAAGCAGGTTTCATA+TGG 0.412230 2_4:-63555115 Msa0341700:five_prime_UTR
TGCCCTTGCCCTTGCCTATG+TGG 0.413272 2_4:+63556935 None:intergenic
TACTCAAACCTCACAAGCAT+TGG 0.414367 2_4:-63554798 Msa0341700:five_prime_UTR
ACTGCTGTATGCAGGGTATT+GGG 0.415322 2_4:-63553457 Msa0341700:three_prime_UTR
TCCAGCTCCAGCTCCAGGGC+CGG 0.416867 2_4:+63554211 None:intergenic
ACCGGTGAAACTACTGGAAC+TGG 0.417489 2_4:-63554020 Msa0341700:CDS
ACTATAACTGGTGCTGCAAC+TGG 0.418376 2_4:-63553978 Msa0341700:CDS
GCTTCAACTGGTACGGGTAC+TGG 0.421812 2_4:-63554188 Msa0341700:five_prime_UTR
GCTGGTACGGCAACTGGAGC+TGG 0.423422 2_4:-63554158 Msa0341700:five_prime_UTR
GTCAAAACAGGTTATAGATA+AGG 0.423730 2_4:-63553418 Msa0341700:three_prime_UTR
TGAGGTTTATCTCTTACAAC+TGG 0.428414 2_4:-63555226 Msa0341700:five_prime_UTR
ACTCAAACCTCACAAGCATT+GGG 0.429574 2_4:-63554797 Msa0341700:five_prime_UTR
AAAAGTAAGGAAGAGAGTTA+AGG 0.430636 2_4:-63554339 Msa0341700:five_prime_UTR
CCAGCTCCAGCTCCAGGGCC+GGG 0.435270 2_4:+63554212 None:intergenic
CGAGGAAGCTTTAGTATGGT+TGG 0.440416 2_4:+63555404 None:intergenic
CCTTCTGATCCTAATGGAAC+AGG 0.442019 2_4:+63553780 None:intergenic
CATAGGCAAGGGCAAGGGCA+AGG 0.444965 2_4:-63556932 Msa0341700:five_prime_UTR
AAGAACTAGCACTGCAATGC+TGG 0.448182 2_4:+63555287 None:intergenic
GCTGGTATGGCTACTGGAGC+TGG 0.451632 2_4:-63554098 Msa0341700:exon
CAAGGGCAAGGGCAAGGGCA+GGG 0.452394 2_4:-63556926 Msa0341700:five_prime_UTR
AGTGGGATGGCACCTATCTC+AGG 0.453316 2_4:+63553561 None:intergenic
ACTGGAGCTGGAGCTGCAGC+AGG 0.455752 2_4:-63554146 Msa0341700:five_prime_UTR
AGCTTTAGTATGGTTGGAGT+TGG 0.457080 2_4:+63555410 None:intergenic
GCTGTAGCTGGTATGGCTAC+TGG 0.462829 2_4:-63554104 Msa0341700:exon
ACTGGGGACTTTACTGGTAC+TGG 0.463772 2_4:-63554062 Msa0341700:CDS
GCTTCCACAGGTGATATTCC+CGG 0.467725 2_4:-63554230 Msa0341700:five_prime_UTR
TTGCCGTAACTGCTGTATGC+AGG 0.468846 2_4:-63553465 Msa0341700:three_prime_UTR
GATACCACTGGCACAGGAGC+TGG 0.473271 2_4:-63553948 Msa0341700:CDS
TACCATAATAGCACATATAT+AGG 0.473334 2_4:+63554424 None:intergenic
ATTGGCACCGGTGAAACTAC+TGG 0.476508 2_4:-63554026 Msa0341700:CDS
GGCATGGAAAGAACAAGAAA+TGG 0.478139 2_4:-63556904 Msa0341700:five_prime_UTR
ATTGGAGCTGGAGCTGTAGC+TGG 0.478768 2_4:-63554116 Msa0341700:five_prime_UTR
TACCCTGCATACAGCAGTTA+CGG 0.479528 2_4:+63553462 None:intergenic
GCTGGAGCTGGAGCTTCAAC+TGG 0.479614 2_4:-63554200 Msa0341700:five_prime_UTR
CTGCAGACGGTCCCAATTCA+GGG 0.482412 2_4:+63554291 None:intergenic
TGTTGTGTGTTAAAAGGAGC+TGG 0.483782 2_4:-63555061 Msa0341700:five_prime_UTR
ACTGGTACGGGTACTGGAGC+TGG 0.485392 2_4:-63554182 Msa0341700:five_prime_UTR
ACAGGTGATATTCCCGGCCC+TGG 0.487404 2_4:-63554224 Msa0341700:five_prime_UTR
GCAGGTACGGCTATTGGAGC+TGG 0.489794 2_4:-63554128 Msa0341700:five_prime_UTR
TCAATCCAGTGGGCAAGCTA+AGG 0.491495 2_4:+63553698 None:intergenic
AAATGATAAAATTTGATCAC+AGG 0.492614 2_4:+63554636 None:intergenic
AGCTGGAGCTTCAACTGGTA+CGG 0.493079 2_4:-63554195 Msa0341700:five_prime_UTR
TTGATTGCTACTAGCGGCAC+TGG 0.496670 2_4:-63556981 Msa0341700:five_prime_UTR
ACTGGAACTGGAGTAGCTAT+TGG 0.498938 2_4:-63554044 Msa0341700:CDS
TTGGTAGCTATTAATCATAT+AGG 0.499472 2_4:-63554899 Msa0341700:five_prime_UTR
AGCTGGAGCTGCAGCAGGTA+CGG 0.502806 2_4:-63554141 Msa0341700:five_prime_UTR
AGAGAATAGTGTTGCCACAT+AGG 0.505315 2_4:-63556949 Msa0341700:five_prime_UTR
CACATCACATGCTCCTTCTC+CGG 0.505499 2_4:+63553905 None:intergenic
TTGCTAGTTGGGTTTGGGTG+AGG 0.506434 2_4:-63553491 Msa0341700:three_prime_UTR
GCTGGAATACGTGAAACAAC+AGG 0.508392 2_4:-63553930 Msa0341700:CDS
CGATCCCTTAGCTTGCCCAC+TGG 0.508993 2_4:-63553703 Msa0341700:CDS
TTGTGTGGTACAGGAGGAGC+AGG 0.509693 2_4:-63555579 Msa0341700:intron
AGCTGGAGCTGTAGCTGGTA+TGG 0.509977 2_4:-63554111 Msa0341700:exon
ACCTTCTTGATCACATCCAT+TGG 0.511996 2_4:-63553588 Msa0341700:three_prime_UTR
AGGAGCATGTGATGTGGCAT+TGG 0.512016 2_4:-63553898 Msa0341700:CDS
AGCACATTGTTTCAATCCAG+TGG 0.514658 2_4:+63553687 None:intergenic
CAATTTGGTTAAAGCTGTTG+TGG 0.515039 2_4:+63553806 None:intergenic
TCTTTAATTAACAGCAAAGC+AGG 0.520053 2_4:-63555125 Msa0341700:five_prime_UTR
TACTGGAGCTGGAGCTGGTA+CGG 0.523812 2_4:-63554171 Msa0341700:five_prime_UTR
GATACAATATGTATGAACTC+AGG 0.525048 2_4:-63554549 Msa0341700:five_prime_UTR
ACTGGTGCGGGAGCTTCCAC+AGG 0.527911 2_4:-63554242 Msa0341700:five_prime_UTR
ACTGGCGATACCACAGGCAC+TGG 0.530919 2_4:-63554002 Msa0341700:CDS
ACTGGTGCTGCAACTGGCAC+TGG 0.532604 2_4:-63553972 Msa0341700:CDS
GGATTTGTAGGAGATAATAC+TGG 0.532991 2_4:-63554260 Msa0341700:five_prime_UTR
GGACATCCATCCATAAGTCT+TGG 0.533357 2_4:-63554844 Msa0341700:five_prime_UTR
ACCAGTAAAGTCCCCAGTGC+CGG 0.533495 2_4:+63554067 None:intergenic
GCAAGGCATAGACGCCTGAC+AGG 0.537537 2_4:+63556788 None:intergenic
ATAGGCAAGGGCAAGGGCAA+GGG 0.539153 2_4:-63556931 Msa0341700:five_prime_UTR
TGCCGTAACTGCTGTATGCA+GGG 0.542098 2_4:-63553464 Msa0341700:three_prime_UTR
GCCAGTTCCAGTAGTTTCAC+CGG 0.543123 2_4:+63554019 None:intergenic
ACTGGAGCTGGAGCTGCTAC+CGG 0.543784 2_4:-63554086 Msa0341700:CDS
GAAACAACAGGAGCCGGAGA+AGG 0.548703 2_4:-63553918 Msa0341700:CDS
CAATCCAGTGGGCAAGCTAA+GGG 0.551114 2_4:+63553699 None:intergenic
TCATATAGGATATATAGGAT+TGG 0.552029 2_4:-63554885 Msa0341700:five_prime_UTR
ATATAGAAACAGAAAGAGAA+AGG 0.554596 2_4:+63557107 None:intergenic
CAAGATGATGTACAAACTTG+TGG 0.560224 2_4:-63555543 Msa0341700:five_prime_UTR
TGCACCACTGAAATATTGTA+TGG 0.560827 2_4:-63553834 Msa0341700:CDS
ATTTGATCACAGGTGAAACA+AGG 0.562127 2_4:+63554646 None:intergenic
AGTAGTAGTGGAATTGAGAG+AGG 0.562231 2_4:-63557171 Msa0341700:five_prime_UTR
AAGCTCCAGCTCCAGCTCCA+GGG 0.563448 2_4:+63554207 None:intergenic
TTGCCACATAGGCAAGGGCA+AGG 0.566012 2_4:-63556938 Msa0341700:five_prime_UTR
GAACTTAACCCGAATTAGGA+AGG 0.566291 2_4:+63554990 None:intergenic
GCATTGGGGAGCCCATCATT+CGG 0.566711 2_4:-63554782 Msa0341700:five_prime_UTR
AGCATGTGATGTGGCATTGG+AGG 0.566773 2_4:-63553895 Msa0341700:CDS
TGAAGATGTACAAGTGATGT+GGG 0.568556 2_4:-63555517 Msa0341700:five_prime_UTR
GCTGGAGCTTCAACTGGTAC+GGG 0.569244 2_4:-63554194 Msa0341700:five_prime_UTR
CCTGTTCCATTAGGATCAGA+AGG 0.569303 2_4:-63553780 Msa0341700:CDS
CAACACTATTCTCTTTGACC+AGG 0.569671 2_4:+63556958 None:intergenic
GTAGGAGATAATACTGGTGC+GGG 0.573004 2_4:-63554254 Msa0341700:five_prime_UTR
GAAGGACTCTATAGTAGTAG+TGG 0.575338 2_4:-63557183 Msa0341700:five_prime_UTR
ATACGTGAAACAACAGGAGC+CGG 0.575957 2_4:-63553924 Msa0341700:CDS
TGCTTGCAGTCGATAACAGT+GGG 0.577246 2_4:+63553544 None:intergenic
AGACAGCAGCACATAGATTG+AGG 0.579626 2_4:-63554363 Msa0341700:five_prime_UTR
ACTGGTGATACCACTGGCAC+AGG 0.580287 2_4:-63553954 Msa0341700:CDS
CAAAGTAGTCGAGGATGACG+TGG 0.581524 2_4:-63553620 Msa0341700:three_prime_UTR
ACGGGTACTGGAGCTGGAGC+TGG 0.582105 2_4:-63554176 Msa0341700:five_prime_UTR
TTTGAACATCAAAGTAGTCG+AGG 0.585179 2_4:-63553629 Msa0341700:three_prime_UTR
TCATGAATAGATATTATACA+TGG 0.587754 2_4:-63554390 Msa0341700:five_prime_UTR
TGTGATTAAAAGTAAAGTGA+AGG 0.587990 2_4:-63554670 Msa0341700:five_prime_UTR
TGTAGGAGATAATACTGGTG+CGG 0.592825 2_4:-63554255 Msa0341700:five_prime_UTR
GCACATTGTTTCAATCCAGT+GGG 0.593204 2_4:+63553688 None:intergenic
CATACAAAGACTCTCCAGAA+AGG 0.593758 2_4:+63555435 None:intergenic
ATACAATATGTATGAACTCA+GGG 0.595577 2_4:-63554548 Msa0341700:five_prime_UTR
TGGGCTCCCCAATGCTTGTG+AGG 0.596428 2_4:+63554790 None:intergenic
TTGGAGGAAGCAAGCAAAGA+CGG 0.598325 2_4:-63553879 Msa0341700:CDS
ACCAATGGATGTGATCAAGA+AGG 0.598927 2_4:+63553587 None:intergenic
AGTTATAGTTCCAGTGCCTG+TGG 0.602983 2_4:+63553992 None:intergenic
ATAGTGTTGCCACATAGGCA+AGG 0.603679 2_4:-63556944 Msa0341700:five_prime_UTR
ACTGGAACTGGCGATACCAC+AGG 0.604063 2_4:-63554008 Msa0341700:CDS
ACTGGATTGAAACAATGTGC+TGG 0.606473 2_4:-63553685 Msa0341700:exon
ACTGGCACTGGTGATACCAC+TGG 0.606553 2_4:-63553960 Msa0341700:CDS
ATGAAGATGTACAAGTGATG+TGG 0.606676 2_4:-63555518 Msa0341700:five_prime_UTR
TGGTACAGGAGGAGCAGGAT+TGG 0.606763 2_4:-63555574 Msa0341700:intron
CAGTGGGCAAGCTAAGGGAT+CGG 0.607003 2_4:+63553704 None:intergenic
TATTCCAGCTCCTGTGCCAG+TGG 0.610040 2_4:+63553944 None:intergenic
AAATAAATAAATAAATGTGA+AGG 0.610708 2_4:-63557201 Msa0341700:five_prime_UTR
TGCAGTCGATAACAGTGGGA+TGG 0.613260 2_4:+63553548 None:intergenic
TAGTGTTGCCACATAGGCAA+GGG 0.614827 2_4:-63556943 Msa0341700:five_prime_UTR
AAAGTCACAGATCTTAGCAC+AGG 0.615864 2_4:+63553738 None:intergenic
TTTCTGTAAGGTATGAGTGA+TGG 0.621732 2_4:-63554942 Msa0341700:five_prime_UTR
ACCTATCTCAGGAAAACCAA+TGG 0.626354 2_4:+63553572 None:intergenic
TGGATGCAGAAAATTAGCAA+TGG 0.628377 2_4:-63554865 Msa0341700:five_prime_UTR
ACTGGAGTAGCTATTGGCAC+CGG 0.628623 2_4:-63554038 Msa0341700:CDS
ACTTCACCAAGACTTATGGA+TGG 0.629003 2_4:+63554838 None:intergenic
CGGAGAAGGAGCATGTGATG+TGG 0.635216 2_4:-63553904 Msa0341700:CDS
GCAGTTGCTTGCGCTTATGG+TGG 0.635788 2_4:+63555457 None:intergenic
TGGGCAAGCTAAGGGATCGG+AGG 0.637132 2_4:+63553707 None:intergenic
ATTGATTTGATTGCTACTAG+CGG 0.638632 2_4:-63556987 Msa0341700:five_prime_UTR
TCCATTAGGATCAGAAGGAG+AGG 0.640280 2_4:-63553775 Msa0341700:CDS
GGGCAAGCTAAGGGATCGGA+GGG 0.640825 2_4:+63553708 None:intergenic
AAGACAGTAGTAGTATCATG+TGG 0.645963 2_4:-63556866 Msa0341700:five_prime_UTR
TTTGATCACAGGTGAAACAA+GGG 0.648496 2_4:+63554647 None:intergenic
CTCAAACCTCACAAGCATTG+GGG 0.654772 2_4:-63554796 Msa0341700:five_prime_UTR
TGCAGACGGTCCCAATTCAG+GGG 0.663383 2_4:+63554292 None:intergenic
AGTGTGATTTGAAGATTGCG+AGG 0.667949 2_4:+63555386 None:intergenic
ACAACCATACAATATTTCAG+TGG 0.668094 2_4:+63553830 None:intergenic
TGATACGGGTAGATAGAGCA+AGG 0.670563 2_4:+63556771 None:intergenic
TGCCACATAGGCAAGGGCAA+GGG 0.671240 2_4:-63556937 Msa0341700:five_prime_UTR
AATCCAGATGAAGCTGCAGA+CGG 0.674003 2_4:+63554278 None:intergenic
GTGCTTGCAGTCGATAACAG+TGG 0.684221 2_4:+63553543 None:intergenic
AGGGCCGGGAATATCACCTG+TGG 0.684521 2_4:+63554226 None:intergenic
ACAGTAGTAGTATCATGTGG+AGG 0.690266 2_4:-63556863 Msa0341700:five_prime_UTR
TGGAGCTGCTACCGGCACTG+GGG 0.700984 2_4:-63554078 Msa0341700:CDS
GTGAGAAAGATAAAAGGACA+AGG 0.702650 2_4:+63557069 None:intergenic
GAGGAAGCAAGCAAAGACGG+TGG 0.751539 2_4:-63553876 Msa0341700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAATAATTTATAA+TGG + chr2_4:63554256-63554275 None:intergenic 0.0%
!! AAATAAATAAATAAATGTGA+AGG - chr2_4:63553388-63553407 Msa0341700:three_prime_UTR 10.0%
!!! CTTCTTAATTTTATTATTTT+TGG - chr2_4:63554031-63554050 Msa0341700:CDS 10.0%
!!! TTATTTTATTTTATACCTTT+CGG - chr2_4:63554266-63554285 Msa0341700:five_prime_UTR 10.0%
!! AAATATGTTGTTAATTAAAT+TGG + chr2_4:63554300-63554319 None:intergenic 10.0%
!! ATAGTACAATATTTATTTAA+GGG + chr2_4:63554355-63554374 None:intergenic 10.0%
!! TATAGTACAATATTTATTTA+AGG + chr2_4:63554356-63554375 None:intergenic 10.0%
!! TAATACTTTACAAATAAAAT+TGG - chr2_4:63555245-63555264 Msa0341700:five_prime_UTR 10.0%
!! GTATATAATTATAATTTCCA+TGG + chr2_4:63553919-63553938 None:intergenic 15.0%
!! TAATTAAGTATATAGTTGAA+TGG - chr2_4:63554080-63554099 Msa0341700:CDS 15.0%
!! TACATCATATTAATAATTGA+TGG - chr2_4:63554648-63554667 Msa0341700:five_prime_UTR 15.0%
!!! TAAAGTATTAAATTTGTGTT+TGG + chr2_4:63555235-63555254 None:intergenic 15.0%
!! TATATTAACAAAATCATATG+AGG - chr2_4:63555345-63555364 Msa0341700:five_prime_UTR 15.0%
!!! ATTTTCACAAATCTAATAAT+TGG + chr2_4:63555624-63555643 None:intergenic 15.0%
!! ATTAATCATATAGGATATAT+AGG - chr2_4:63555699-63555718 Msa0341700:intron 15.0%
!! ACAACAAATTTATGCATATT+TGG - chr2_4:63553763-63553782 Msa0341700:CDS 20.0%
!! ATAATTATAATTTCCATGGA+TGG + chr2_4:63553915-63553934 None:intergenic 20.0%
!! TTATTTAAGGGAAAAAACTT+AGG + chr2_4:63554343-63554362 None:intergenic 20.0%
!! TGTAAGAATTACACAAAAAA+GGG + chr2_4:63554632-63554651 None:intergenic 20.0%
!! ATGTAAGAATTACACAAAAA+AGG + chr2_4:63554633-63554652 None:intergenic 20.0%
!!! TACTCTCACAAATTATATTT+TGG + chr2_4:63555875-63555894 None:intergenic 20.0%
!! AAATGATAAAATTTGATCAC+AGG + chr2_4:63555956-63555975 None:intergenic 20.0%
!! TCATGAATAGATATTATACA+TGG - chr2_4:63556199-63556218 Msa0341700:intron 20.0%
!!! TATTTTTGTTATGTCAAAAC+AGG - chr2_4:63557159-63557178 Msa0341700:five_prime_UTR 20.0%
! ATATAGAAACAGAAAGAGAA+AGG + chr2_4:63553485-63553504 None:intergenic 25.0%
!!! AATAAATAGTACCGTTTTTG+CGG + chr2_4:63553848-63553867 None:intergenic 25.0%
! CGTACAAATTATATATGTTG+CGG + chr2_4:63554004-63554023 None:intergenic 25.0%
! TAAGTATATAGTTGAATGGA+TGG - chr2_4:63554084-63554103 Msa0341700:CDS 25.0%
! TTAATATTACATAAGCACAC+AGG - chr2_4:63554187-63554206 Msa0341700:five_prime_UTR 25.0%
! TACAAAATACATGATACAAG+TGG - chr2_4:63554381-63554400 Msa0341700:five_prime_UTR 25.0%
! TGTATACTAGTATAGTATAG+GGG + chr2_4:63554561-63554580 None:intergenic 25.0%
! GTGTATACTAGTATAGTATA+GGG + chr2_4:63554562-63554581 None:intergenic 25.0%
! CTATACTATACTAGTATACA+CGG - chr2_4:63554561-63554580 Msa0341700:five_prime_UTR 25.0%
! GATATGATACTTTAGGTAAA+TGG - chr2_4:63554673-63554692 Msa0341700:five_prime_UTR 25.0%
! ATACTTTAGGTAAATGGAAA+GGG - chr2_4:63554679-63554698 Msa0341700:five_prime_UTR 25.0%
! AGGTTACCAAAAAGTTAAAT+GGG + chr2_4:63555557-63555576 None:intergenic 25.0%
! AAGGTTACCAAAAAGTTAAA+TGG + chr2_4:63555558-63555577 None:intergenic 25.0%
! CACATAAATCAAGAGATATA+AGG + chr2_4:63555577-63555596 None:intergenic 25.0%
!! ACAAAAATTTTGTCAAGTCT+TGG - chr2_4:63555671-63555690 Msa0341700:intron 25.0%
!! TTGGTAGCTATTAATCATAT+AGG - chr2_4:63555690-63555709 Msa0341700:intron 25.0%
! TCATATAGGATATATAGGAT+TGG - chr2_4:63555704-63555723 Msa0341700:intron 25.0%
!! CAAAAGTTCTCTTTCTTTTA+TGG - chr2_4:63555835-63555854 Msa0341700:intron 25.0%
!!! TTCACTTTACTTTTAATCAC+AGG + chr2_4:63555920-63555939 None:intergenic 25.0%
! TGTGATTAAAAGTAAAGTGA+AGG - chr2_4:63555919-63555938 Msa0341700:intron 25.0%
! ATACAATATGTATGAACTCA+GGG - chr2_4:63556041-63556060 Msa0341700:intron 25.0%
! AAATAGAACAATGACATTTC+TGG - chr2_4:63556093-63556112 Msa0341700:intron 25.0%
! TACCATAATAGCACATATAT+AGG + chr2_4:63556168-63556187 None:intergenic 25.0%
! TCAAAACAGGTTATAGATAA+GGG - chr2_4:63557172-63557191 Msa0341700:five_prime_UTR 25.0%
GTACATGTGAGAAAGATAAA+AGG + chr2_4:63553529-63553548 None:intergenic 30.0%
AAGAAGAAGAAGAAGAAAGT+AGG - chr2_4:63553572-63553591 Msa0341700:three_prime_UTR 30.0%
!! ATTGATTTGATTGCTACTAG+CGG - chr2_4:63553602-63553621 Msa0341700:three_prime_UTR 30.0%
! AAACTATGATTTTTCCTGTC+AGG - chr2_4:63553787-63553806 Msa0341700:CDS 30.0%
ATACAATTACAAACCATCCA+TGG - chr2_4:63553899-63553918 Msa0341700:CDS 30.0%
ATTGACACTGATCATCATAA+TGG + chr2_4:63554151-63554170 None:intergenic 30.0%
TCAGTGTCAATATTTGCTTT+CGG - chr2_4:63554160-63554179 Msa0341700:five_prime_UTR 30.0%
AATTTGTCATGAACTTGAAG+TGG + chr2_4:63554213-63554232 None:intergenic 30.0%
TTTATAATGGCATTAGACGT+AGG + chr2_4:63554243-63554262 None:intergenic 30.0%
! TTAACAACATATTTTCAGCC+AGG - chr2_4:63554306-63554325 Msa0341700:five_prime_UTR 30.0%
! ATATTTTCAGCCAGGATATA+CGG - chr2_4:63554314-63554333 Msa0341700:five_prime_UTR 30.0%
TTTAAGGGAAAAAACTTAGG+TGG + chr2_4:63554340-63554359 None:intergenic 30.0%
AAAATACATGATACAAGTGG+TGG - chr2_4:63554384-63554403 Msa0341700:five_prime_UTR 30.0%
CGTGTATACTAGTATAGTAT+AGG + chr2_4:63554563-63554582 None:intergenic 30.0%
GATGGATGATATGATACTTT+AGG - chr2_4:63554666-63554685 Msa0341700:five_prime_UTR 30.0%
GATACTTTAGGTAAATGGAA+AGG - chr2_4:63554678-63554697 Msa0341700:five_prime_UTR 30.0%
TACTTTAGGTAAATGGAAAG+GGG - chr2_4:63554680-63554699 Msa0341700:five_prime_UTR 30.0%
ATTCTCTACAGATACTTCTT+GGG + chr2_4:63554911-63554930 None:intergenic 30.0%
TATTCTCTACAGATACTTCT+TGG + chr2_4:63554912-63554931 None:intergenic 30.0%
TACATGCATGATTGAATGTA+AGG + chr2_4:63554973-63554992 None:intergenic 30.0%
! TACTCAATAACTCCATTTTG+AGG - chr2_4:63555429-63555448 Msa0341700:five_prime_UTR 30.0%
TCTTTAATTAACAGCAAAGC+AGG - chr2_4:63555464-63555483 Msa0341700:five_prime_UTR 30.0%
TTATGTGAACCTTCCTAATT+CGG - chr2_4:63555590-63555609 Msa0341700:intron 30.0%
TGTGAAAATCACTTTCTGTA+AGG - chr2_4:63555635-63555654 Msa0341700:intron 30.0%
! CTTTTGTATTACCGAATGAT+GGG + chr2_4:63555821-63555840 None:intergenic 30.0%
! ACTTTTGTATTACCGAATGA+TGG + chr2_4:63555822-63555841 None:intergenic 30.0%
!! ACTTTACTTTTAATCACAGG+TGG + chr2_4:63555917-63555936 None:intergenic 30.0%
GATACAATATGTATGAACTC+AGG - chr2_4:63556040-63556059 Msa0341700:intron 30.0%
! CTCCTATATATGTGCTATTA+TGG - chr2_4:63556163-63556182 Msa0341700:intron 30.0%
CATAGATTGAGGAAAAAGTA+AGG - chr2_4:63556237-63556256 Msa0341700:intron 30.0%
AAAAGTAAGGAAGAGAGTTA+AGG - chr2_4:63556250-63556269 Msa0341700:intron 30.0%
ACAACCATACAATATTTCAG+TGG + chr2_4:63556762-63556781 None:intergenic 30.0%
GTTCAAAAATTCCAGAACAT+GGG + chr2_4:63556947-63556966 None:intergenic 30.0%
TGTTCAAAAATTCCAGAACA+TGG + chr2_4:63556948-63556967 None:intergenic 30.0%
GTCAAAACAGGTTATAGATA+AGG - chr2_4:63557171-63557190 Msa0341700:five_prime_UTR 30.0%
GTGAGAAAGATAAAAGGACA+AGG + chr2_4:63553523-63553542 None:intergenic 35.0%
AAGACAGTAGTAGTATCATG+TGG - chr2_4:63553723-63553742 Msa0341700:CDS 35.0%
ACAAACTTGATCTTGCTTTC+AGG - chr2_4:63553969-63553988 Msa0341700:CDS 35.0%
TGATCATCATAATGGTTGGT+TGG + chr2_4:63554143-63554162 None:intergenic 35.0%
ACACTGATCATCATAATGGT+TGG + chr2_4:63554147-63554166 None:intergenic 35.0%
AAGTTGCACTGAAAAAGATG+TGG + chr2_4:63554467-63554486 None:intergenic 35.0%
TTTATACCACTTTCATCGTG+CGG - chr2_4:63554485-63554504 Msa0341700:five_prime_UTR 35.0%
!! ATGCTTCAAAAAGTGTCCTA+TGG - chr2_4:63554589-63554608 Msa0341700:five_prime_UTR 35.0%
! CACAAGATTTTCTCCTTCTT+GGG + chr2_4:63554717-63554736 None:intergenic 35.0%
! ACACAAGATTTTCTCCTTCT+TGG + chr2_4:63554718-63554737 None:intergenic 35.0%
AAGAAGGAGAAAATCTTGTG+TGG - chr2_4:63554717-63554736 Msa0341700:five_prime_UTR 35.0%
AAAAAGAGAAGAGAGAGAAG+AGG - chr2_4:63554779-63554798 Msa0341700:five_prime_UTR 35.0%
AAAAGAGAAGAGAGAGAAGA+GGG - chr2_4:63554780-63554799 Msa0341700:five_prime_UTR 35.0%
GTGACCAAAACCAAAATTCT+TGG - chr2_4:63554861-63554880 Msa0341700:five_prime_UTR 35.0%
!!! AGGACCAAGAATTTTGGTTT+TGG + chr2_4:63554868-63554887 None:intergenic 35.0%
AAAACCAAAATTCTTGGTCC+TGG - chr2_4:63554867-63554886 Msa0341700:five_prime_UTR 35.0%
TTCTCTACAGATACTTCTTG+GGG + chr2_4:63554910-63554929 None:intergenic 35.0%
CAAGATGATGTACAAACTTG+TGG - chr2_4:63555046-63555065 Msa0341700:five_prime_UTR 35.0%
ATGAAGATGTACAAGTGATG+TGG - chr2_4:63555071-63555090 Msa0341700:five_prime_UTR 35.0%
TGAAGATGTACAAGTGATGT+GGG - chr2_4:63555072-63555091 Msa0341700:five_prime_UTR 35.0%
TGAGGTTTATCTCTTACAAC+TGG - chr2_4:63555363-63555382 Msa0341700:five_prime_UTR 35.0%
GCAGTAACTATTCCTCAAAA+TGG + chr2_4:63555444-63555463 None:intergenic 35.0%
ACCTTGTGTTGTGTGTTAAA+AGG - chr2_4:63555522-63555541 Msa0341700:five_prime_UTR 35.0%
! TCCTTTTAACACACAACACA+AGG + chr2_4:63555526-63555545 None:intergenic 35.0%
TATGTGAACCTTCCTAATTC+GGG - chr2_4:63555591-63555610 Msa0341700:intron 35.0%
ATTGGAACTTAACCCGAATT+AGG + chr2_4:63555606-63555625 None:intergenic 35.0%
TTTCTGTAAGGTATGAGTGA+TGG - chr2_4:63555647-63555666 Msa0341700:intron 35.0%
TGGATGCAGAAAATTAGCAA+TGG - chr2_4:63555724-63555743 Msa0341700:intron 35.0%
AGATACTTCACCAAGACTTA+TGG + chr2_4:63555758-63555777 None:intergenic 35.0%
TTTGATCACAGGTGAAACAA+GGG + chr2_4:63555945-63555964 None:intergenic 35.0%
ATTTGATCACAGGTGAAACA+AGG + chr2_4:63555946-63555965 None:intergenic 35.0%
GGATTTGTAGGAGATAATAC+TGG - chr2_4:63556329-63556348 Msa0341700:intron 35.0%
TGCACCACTGAAATATTGTA+TGG - chr2_4:63556755-63556774 Msa0341700:intron 35.0%
CAATTTGGTTAAAGCTGTTG+TGG + chr2_4:63556786-63556805 None:intergenic 35.0%
! CACAACAGCTTTAACCAAAT+TGG - chr2_4:63556784-63556803 Msa0341700:five_prime_UTR 35.0%
! TAGTTTGATTTCCCATGTTC+TGG - chr2_4:63556933-63556952 Msa0341700:five_prime_UTR 35.0%
TTTGAACATCAAAGTAGTCG+AGG - chr2_4:63556960-63556979 Msa0341700:five_prime_UTR 35.0%
! AGTTTATTTCGCTTGCTAGT+TGG - chr2_4:63557086-63557105 Msa0341700:five_prime_UTR 35.0%
! GTTTATTTCGCTTGCTAGTT+GGG - chr2_4:63557087-63557106 Msa0341700:five_prime_UTR 35.0%
GAAGGACTCTATAGTAGTAG+TGG - chr2_4:63553406-63553425 Msa0341700:three_prime_UTR 40.0%
! AGTAGTAGTGGAATTGAGAG+AGG - chr2_4:63553418-63553437 Msa0341700:three_prime_UTR 40.0%
CAACACTATTCTCTTTGACC+AGG + chr2_4:63553634-63553653 None:intergenic 40.0%
AGAGAATAGTGTTGCCACAT+AGG - chr2_4:63553640-63553659 Msa0341700:three_prime_UTR 40.0%
GGCATGGAAAGAACAAGAAA+TGG - chr2_4:63553685-63553704 Msa0341700:exon 40.0%
ACAGTAGTAGTATCATGTGG+AGG - chr2_4:63553726-63553745 Msa0341700:CDS 40.0%
!! AAATAGTACCGTTTTTGCGG+TGG + chr2_4:63553845-63553864 None:intergenic 40.0%
! ATAATGGTTGGTTGGTTGGT+TGG + chr2_4:63554135-63554154 None:intergenic 40.0%
! CATCATAATGGTTGGTTGGT+TGG + chr2_4:63554139-63554158 None:intergenic 40.0%
AAATTGGTTGTGATGCCGAA+AGG + chr2_4:63554284-63554303 None:intergenic 40.0%
! TTGACGTAGCTTAGCTTTCA+GGG + chr2_4:63554513-63554532 None:intergenic 40.0%
! TTTGACGTAGCTTAGCTTTC+AGG + chr2_4:63554514-63554533 None:intergenic 40.0%
CCTGTCTGTCATTAAACCAT+AGG + chr2_4:63554608-63554627 None:intergenic 40.0%
CCTATGGTTTAATGACAGAC+AGG - chr2_4:63554605-63554624 Msa0341700:five_prime_UTR 40.0%
! AGATTTTCTCCTTCTTGGGA+GGG + chr2_4:63554713-63554732 None:intergenic 40.0%
! AAGATTTTCTCCTTCTTGGG+AGG + chr2_4:63554714-63554733 None:intergenic 40.0%
AAGAGGGAAGAGAGAGAAAA+TGG - chr2_4:63554796-63554815 Msa0341700:five_prime_UTR 40.0%
GACATGAGTACATGTTTGTG+TGG - chr2_4:63554995-63555014 Msa0341700:five_prime_UTR 40.0%
AGTACATGTTTGTGTGGTAC+AGG - chr2_4:63555001-63555020 Msa0341700:five_prime_UTR 40.0%
CATACAAAGACTCTCCAGAA+AGG + chr2_4:63555157-63555176 None:intergenic 40.0%
! AGCTTTAGTATGGTTGGAGT+TGG + chr2_4:63555182-63555201 None:intergenic 40.0%
! ATTGCGAGGAAGCTTTAGTA+TGG + chr2_4:63555192-63555211 None:intergenic 40.0%
AGTGTGATTTGAAGATTGCG+AGG + chr2_4:63555206-63555225 None:intergenic 40.0%
ACAGCAAAGCAGGTTTCATA+TGG - chr2_4:63555474-63555493 Msa0341700:five_prime_UTR 40.0%
TGTTGTGTGTTAAAAGGAGC+TGG - chr2_4:63555528-63555547 Msa0341700:five_prime_UTR 40.0%
!! TGGCTGCCCATTTAACTTTT+TGG - chr2_4:63555548-63555567 Msa0341700:five_prime_UTR 40.0%
GAACTTAACCCGAATTAGGA+AGG + chr2_4:63555602-63555621 None:intergenic 40.0%
ACTTCACCAAGACTTATGGA+TGG + chr2_4:63555754-63555773 None:intergenic 40.0%
TACTCAAACCTCACAAGCAT+TGG - chr2_4:63555791-63555810 Msa0341700:intron 40.0%
ACTCAAACCTCACAAGCATT+GGG - chr2_4:63555792-63555811 Msa0341700:intron 40.0%
!! GAGTTAGTCTTGTAAGTTGC+AGG - chr2_4:63556018-63556037 Msa0341700:intron 40.0%
AGACTTTATCACCCCTGAAT+TGG - chr2_4:63556286-63556305 Msa0341700:intron 40.0%
GACTTTATCACCCCTGAATT+GGG - chr2_4:63556287-63556306 Msa0341700:intron 40.0%
TGTAGGAGATAATACTGGTG+CGG - chr2_4:63556334-63556353 Msa0341700:intron 40.0%
TAATGGAACAGGTGCCAATT+TGG + chr2_4:63556801-63556820 None:intergenic 40.0%
AAATTGGCACCTGTTCCATT+AGG - chr2_4:63556800-63556819 Msa0341700:five_prime_UTR 40.0%
AAAGTCACAGATCTTAGCAC+AGG + chr2_4:63556854-63556873 None:intergenic 40.0%
GCACATTGTTTCAATCCAGT+GGG + chr2_4:63556904-63556923 None:intergenic 40.0%
AGCACATTGTTTCAATCCAG+TGG + chr2_4:63556905-63556924 None:intergenic 40.0%
ACTGGATTGAAACAATGTGC+TGG - chr2_4:63556904-63556923 Msa0341700:five_prime_UTR 40.0%
ACCTTCTTGATCACATCCAT+TGG - chr2_4:63557001-63557020 Msa0341700:five_prime_UTR 40.0%
ACCAATGGATGTGATCAAGA+AGG + chr2_4:63557005-63557024 None:intergenic 40.0%
!!! TCCATTGGTTTTCCTGAGAT+AGG - chr2_4:63557016-63557035 Msa0341700:five_prime_UTR 40.0%
ACCTATCTCAGGAAAACCAA+TGG + chr2_4:63557020-63557039 None:intergenic 40.0%
ATAGTGTTGCCACATAGGCA+AGG - chr2_4:63553645-63553664 Msa0341700:three_prime_UTR 45.0%
TAGTGTTGCCACATAGGCAA+GGG - chr2_4:63553646-63553665 Msa0341700:three_prime_UTR 45.0%
TGATACGGGTAGATAGAGCA+AGG + chr2_4:63553821-63553840 None:intergenic 45.0%
!! GTTTTTGCGGTGGTTGATAC+GGG + chr2_4:63553835-63553854 None:intergenic 45.0%
!! CGTTTTTGCGGTGGTTGATA+CGG + chr2_4:63553836-63553855 None:intergenic 45.0%
CGTATCAACCACCGCAAAAA+CGG - chr2_4:63553834-63553853 Msa0341700:CDS 45.0%
GAGAAAATCTTGTGTGGTCC+TGG - chr2_4:63554723-63554742 Msa0341700:five_prime_UTR 45.0%
! TGGACCAGGACCAAGAATTT+TGG + chr2_4:63554874-63554893 None:intergenic 45.0%
ACATGTTTGTGTGGTACAGG+AGG - chr2_4:63555004-63555023 Msa0341700:five_prime_UTR 45.0%
! CGAGGAAGCTTTAGTATGGT+TGG + chr2_4:63555188-63555207 None:intergenic 45.0%
AAGAACTAGCACTGCAATGC+TGG + chr2_4:63555305-63555324 None:intergenic 45.0%
! AGCATTGCAGTGCTAGTTCT+TGG - chr2_4:63555304-63555323 Msa0341700:five_prime_UTR 45.0%
GGACATCCATCCATAAGTCT+TGG - chr2_4:63555745-63555764 Msa0341700:intron 45.0%
! CTCAAACCTCACAAGCATTG+GGG - chr2_4:63555793-63555812 Msa0341700:intron 45.0%
! CAATCTATGTGCTGCTGTCT+AGG + chr2_4:63556226-63556245 None:intergenic 45.0%
AGACAGCAGCACATAGATTG+AGG - chr2_4:63556226-63556245 Msa0341700:intron 45.0%
AATCCAGATGAAGCTGCAGA+CGG + chr2_4:63556314-63556333 None:intergenic 45.0%
GCAGCTTCATCTGGATTTGT+AGG - chr2_4:63556317-63556336 Msa0341700:intron 45.0%
GTAGGAGATAATACTGGTGC+GGG - chr2_4:63556335-63556354 Msa0341700:intron 45.0%
! GACTTTACTGGTACTGGAAC+TGG - chr2_4:63556533-63556552 Msa0341700:intron 45.0%
ACTGGAACTGGAGTAGCTAT+TGG - chr2_4:63556545-63556564 Msa0341700:intron 45.0%
AGTTATAGTTCCAGTGCCTG+TGG + chr2_4:63556600-63556619 None:intergenic 45.0%
!! ACAGGCACTGGAACTATAAC+TGG - chr2_4:63556599-63556618 Msa0341700:intron 45.0%
!! ACTATAACTGGTGCTGCAAC+TGG - chr2_4:63556611-63556630 Msa0341700:intron 45.0%
GCTGGAATACGTGAAACAAC+AGG - chr2_4:63556659-63556678 Msa0341700:intron 45.0%
ATACGTGAAACAACAGGAGC+CGG - chr2_4:63556665-63556684 Msa0341700:intron 45.0%
TTGGAGGAAGCAAGCAAAGA+CGG - chr2_4:63556710-63556729 Msa0341700:intron 45.0%
CCTTCTGATCCTAATGGAAC+AGG + chr2_4:63556812-63556831 None:intergenic 45.0%
CCTGTTCCATTAGGATCAGA+AGG - chr2_4:63556809-63556828 Msa0341700:five_prime_UTR 45.0%
TCCATTAGGATCAGAAGGAG+AGG - chr2_4:63556814-63556833 Msa0341700:five_prime_UTR 45.0%
ACCTCTCCTTCTGATCCTAA+TGG + chr2_4:63556818-63556837 None:intergenic 45.0%
TGCTTGCAGTCGATAACAGT+GGG + chr2_4:63557048-63557067 None:intergenic 45.0%
! TTTCGCTTGCTAGTTGGGTT+TGG - chr2_4:63557092-63557111 Msa0341700:five_prime_UTR 45.0%
! TTCGCTTGCTAGTTGGGTTT+GGG - chr2_4:63557093-63557112 Msa0341700:five_prime_UTR 45.0%
TACCCTGCATACAGCAGTTA+CGG + chr2_4:63557130-63557149 None:intergenic 45.0%
AACTGCTGTATGCAGGGTAT+TGG - chr2_4:63557131-63557150 Msa0341700:five_prime_UTR 45.0%
! ACTGCTGTATGCAGGGTATT+GGG - chr2_4:63557132-63557151 Msa0341700:five_prime_UTR 45.0%
TTGATTGCTACTAGCGGCAC+TGG - chr2_4:63553608-63553627 Msa0341700:three_prime_UTR 50.0%
ACTTAGGTGGCCGTATATCC+TGG + chr2_4:63554327-63554346 None:intergenic 50.0%
ATCCTTTGATCAGTGCCCTG+CGG - chr2_4:63554423-63554442 Msa0341700:five_prime_UTR 50.0%
CTACCTCTATTGTTGCCGCA+GGG + chr2_4:63554441-63554460 None:intergenic 50.0%
AAAGACCACTTGTGTGGACC+AGG + chr2_4:63554744-63554763 None:intergenic 50.0%
TGGTCCACACAAGTGGTCTT+TGG - chr2_4:63554743-63554762 Msa0341700:five_prime_UTR 50.0%
GTGACCAAAGACCACTTGTG+TGG + chr2_4:63554750-63554769 None:intergenic 50.0%
GAGAAACACTTGTGTGGACC+AGG + chr2_4:63554888-63554907 None:intergenic 50.0%
CTTGGGGAGAAACACTTGTG+TGG + chr2_4:63554894-63554913 None:intergenic 50.0%
AAGGCAGTTGCTTGCGCTTA+TGG + chr2_4:63555138-63555157 None:intergenic 50.0%
GCTTCCACAGGTGATATTCC+CGG - chr2_4:63556359-63556378 Msa0341700:intron 50.0%
AGCTGGAGCTTCAACTGGTA+CGG - chr2_4:63556394-63556413 Msa0341700:intron 50.0%
ACTGGGGACTTTACTGGTAC+TGG - chr2_4:63556527-63556546 Msa0341700:intron 50.0%
ACTGGAGTAGCTATTGGCAC+CGG - chr2_4:63556551-63556570 Msa0341700:intron 50.0%
!! ATTGGCACCGGTGAAACTAC+TGG - chr2_4:63556563-63556582 Msa0341700:intron 50.0%
ACCGGTGAAACTACTGGAAC+TGG - chr2_4:63556569-63556588 Msa0341700:intron 50.0%
GCCAGTTCCAGTAGTTTCAC+CGG + chr2_4:63556573-63556592 None:intergenic 50.0%
CACATCACATGCTCCTTCTC+CGG + chr2_4:63556687-63556706 None:intergenic 50.0%
! AGGAGCATGTGATGTGGCAT+TGG - chr2_4:63556691-63556710 Msa0341700:intron 50.0%
! AGCATGTGATGTGGCATTGG+AGG - chr2_4:63556694-63556713 Msa0341700:intron 50.0%
CAATCCAGTGGGCAAGCTAA+GGG + chr2_4:63556893-63556912 None:intergenic 50.0%
TCAATCCAGTGGGCAAGCTA+AGG + chr2_4:63556894-63556913 None:intergenic 50.0%
CAAAGTAGTCGAGGATGACG+TGG - chr2_4:63556969-63556988 Msa0341700:five_prime_UTR 50.0%
TGCAGTCGATAACAGTGGGA+TGG + chr2_4:63557044-63557063 None:intergenic 50.0%
GTGCTTGCAGTCGATAACAG+TGG + chr2_4:63557049-63557068 None:intergenic 50.0%
TTGCTAGTTGGGTTTGGGTG+AGG - chr2_4:63557098-63557117 Msa0341700:five_prime_UTR 50.0%
TTGCCGTAACTGCTGTATGC+AGG - chr2_4:63557124-63557143 Msa0341700:five_prime_UTR 50.0%
TGCCGTAACTGCTGTATGCA+GGG - chr2_4:63557125-63557144 Msa0341700:five_prime_UTR 50.0%
TTGCCACATAGGCAAGGGCA+AGG - chr2_4:63553651-63553670 Msa0341700:three_prime_UTR 55.0%
TGCCACATAGGCAAGGGCAA+GGG - chr2_4:63553652-63553671 Msa0341700:three_prime_UTR 55.0%
ATAGGCAAGGGCAAGGGCAA+GGG - chr2_4:63553658-63553677 Msa0341700:three_prime_UTR 55.0%
CCTACCTCTATTGTTGCCGC+AGG + chr2_4:63554442-63554461 None:intergenic 55.0%
CCTGCGGCAACAATAGAGGT+AGG - chr2_4:63554439-63554458 Msa0341700:five_prime_UTR 55.0%
TCTCCTTCTTGGGAGGGTCA+GGG + chr2_4:63554707-63554726 None:intergenic 55.0%
TTCTCCTTCTTGGGAGGGTC+AGG + chr2_4:63554708-63554727 None:intergenic 55.0%
TTGTGTGGTACAGGAGGAGC+AGG - chr2_4:63555010-63555029 Msa0341700:five_prime_UTR 55.0%
TGGTACAGGAGGAGCAGGAT+TGG - chr2_4:63555015-63555034 Msa0341700:five_prime_UTR 55.0%
GCAGTTGCTTGCGCTTATGG+TGG + chr2_4:63555135-63555154 None:intergenic 55.0%
AGCGCAAGCAACTGCCTTTC+TGG - chr2_4:63555140-63555159 Msa0341700:five_prime_UTR 55.0%
GCATTGGGGAGCCCATCATT+CGG - chr2_4:63555807-63555826 Msa0341700:intron 55.0%
TGCAGACGGTCCCAATTCAG+GGG + chr2_4:63556300-63556319 None:intergenic 55.0%
CTGCAGACGGTCCCAATTCA+GGG + chr2_4:63556301-63556320 None:intergenic 55.0%
GCTGGAGCTTCAACTGGTAC+GGG - chr2_4:63556395-63556414 Msa0341700:intron 55.0%
GCTTCAACTGGTACGGGTAC+TGG - chr2_4:63556401-63556420 Msa0341700:intron 55.0%
TACTGGAGCTGGAGCTGGTA+CGG - chr2_4:63556418-63556437 Msa0341700:intron 55.0%
ATTGGAGCTGGAGCTGTAGC+TGG - chr2_4:63556473-63556492 Msa0341700:intron 55.0%
AGCTGGAGCTGTAGCTGGTA+TGG - chr2_4:63556478-63556497 Msa0341700:intron 55.0%
GCTGTAGCTGGTATGGCTAC+TGG - chr2_4:63556485-63556504 Msa0341700:intron 55.0%
ACCAGTAAAGTCCCCAGTGC+CGG + chr2_4:63556525-63556544 None:intergenic 55.0%
ACTGGAACTGGCGATACCAC+AGG - chr2_4:63556581-63556600 Msa0341700:intron 55.0%
!! ACTGGCACTGGTGATACCAC+TGG - chr2_4:63556629-63556648 Msa0341700:intron 55.0%
ACTGGTGATACCACTGGCAC+AGG - chr2_4:63556635-63556654 Msa0341700:intron 55.0%
TATTCCAGCTCCTGTGCCAG+TGG + chr2_4:63556648-63556667 None:intergenic 55.0%
GAAACAACAGGAGCCGGAGA+AGG - chr2_4:63556671-63556690 Msa0341700:intron 55.0%
! CGGAGAAGGAGCATGTGATG+TGG - chr2_4:63556685-63556704 Msa0341700:intron 55.0%
GAGGAAGCAAGCAAAGACGG+TGG - chr2_4:63556713-63556732 Msa0341700:intron 55.0%
CAGTGGGCAAGCTAAGGGAT+CGG + chr2_4:63556888-63556907 None:intergenic 55.0%
AGTGGGATGGCACCTATCTC+AGG + chr2_4:63557031-63557050 None:intergenic 55.0%
TGCCCTTGCCCTTGCCTATG+TGG + chr2_4:63553657-63553676 None:intergenic 60.0%
CATAGGCAAGGGCAAGGGCA+AGG - chr2_4:63553657-63553676 Msa0341700:three_prime_UTR 60.0%
GCAAGGCATAGACGCCTGAC+AGG + chr2_4:63553804-63553823 None:intergenic 60.0%
!! TGCCGCAGGGCACTGATCAA+AGG + chr2_4:63554428-63554447 None:intergenic 60.0%
GTGCCCTGCGGCAACAATAG+AGG - chr2_4:63554435-63554454 Msa0341700:five_prime_UTR 60.0%
!! AGGGCACCGCACGATGAAAG+TGG + chr2_4:63554494-63554513 None:intergenic 60.0%
GTGGTCCTGGTCCACACAAG+TGG - chr2_4:63554736-63554755 Msa0341700:five_prime_UTR 60.0%
TGGGCTCCCCAATGCTTGTG+AGG + chr2_4:63555802-63555821 None:intergenic 60.0%
GCTGCAGACGGTCCCAATTC+AGG + chr2_4:63556302-63556321 None:intergenic 60.0%
GGACCGTCTGCAGCTTCATC+TGG - chr2_4:63556308-63556327 Msa0341700:intron 60.0%
AGGGCCGGGAATATCACCTG+TGG + chr2_4:63556366-63556385 None:intergenic 60.0%
ACAGGTGATATTCCCGGCCC+TGG - chr2_4:63556365-63556384 Msa0341700:intron 60.0%
AAGCTCCAGCTCCAGCTCCA+GGG + chr2_4:63556385-63556404 None:intergenic 60.0%
GCTGGAGCTGGAGCTTCAAC+TGG - chr2_4:63556389-63556408 Msa0341700:intron 60.0%
!! ACTGGTACGGGTACTGGAGC+TGG - chr2_4:63556407-63556426 Msa0341700:intron 60.0%
AGCTGGAGCTGCAGCAGGTA+CGG - chr2_4:63556448-63556467 Msa0341700:intron 60.0%
GCTGCAGCAGGTACGGCTAT+TGG - chr2_4:63556455-63556474 Msa0341700:intron 60.0%
GCAGGTACGGCTATTGGAGC+TGG - chr2_4:63556461-63556480 Msa0341700:intron 60.0%
GCTGGTATGGCTACTGGAGC+TGG - chr2_4:63556491-63556510 Msa0341700:intron 60.0%
ACTGGAGCTGGAGCTGCTAC+CGG - chr2_4:63556503-63556522 Msa0341700:intron 60.0%
! ACCGGCACTGGGGACTTTAC+TGG - chr2_4:63556521-63556540 Msa0341700:intron 60.0%
ACTGGCGATACCACAGGCAC+TGG - chr2_4:63556587-63556606 Msa0341700:intron 60.0%
!! ACTGGTGCTGCAACTGGCAC+TGG - chr2_4:63556617-63556636 Msa0341700:intron 60.0%
GATACCACTGGCACAGGAGC+TGG - chr2_4:63556641-63556660 Msa0341700:intron 60.0%
GGGCAAGCTAAGGGATCGGA+GGG + chr2_4:63556884-63556903 None:intergenic 60.0%
TGGGCAAGCTAAGGGATCGG+AGG + chr2_4:63556885-63556904 None:intergenic 60.0%
!! CGATCCCTTAGCTTGCCCAC+TGG - chr2_4:63556886-63556905 Msa0341700:five_prime_UTR 60.0%
!! TGCTACTAGCGGCACTGGCC+TGG - chr2_4:63553613-63553632 Msa0341700:three_prime_UTR 65.0%
CAAGGGCAAGGGCAAGGGCA+GGG - chr2_4:63553663-63553682 Msa0341700:three_prime_UTR 65.0%
AAGGGCAAGGGCAAGGGCAG+GGG - chr2_4:63553664-63553683 Msa0341700:three_prime_UTR 65.0%
GGTCCCTGACCCTCCCAAGA+AGG - chr2_4:63554701-63554720 Msa0341700:five_prime_UTR 65.0%
ACTGGTGCGGGAGCTTCCAC+AGG - chr2_4:63556347-63556366 Msa0341700:intron 65.0%
GATATTCCCGGCCCTGGAGC+TGG - chr2_4:63556371-63556390 Msa0341700:intron 65.0%
GAAGCTCCAGCTCCAGCTCC+AGG + chr2_4:63556386-63556405 None:intergenic 65.0%
!! ACGGGTACTGGAGCTGGAGC+TGG - chr2_4:63556413-63556432 Msa0341700:intron 65.0%
GCTGGAGCTGGTACGGCAAC+TGG - chr2_4:63556425-63556444 Msa0341700:intron 65.0%
GCTGGTACGGCAACTGGAGC+TGG - chr2_4:63556431-63556450 Msa0341700:intron 65.0%
ACTGGAGCTGGAGCTGCAGC+AGG - chr2_4:63556443-63556462 Msa0341700:intron 65.0%
CTGGAGCTGCTACCGGCACT+GGG - chr2_4:63556510-63556529 Msa0341700:intron 65.0%
TGGAGCTGCTACCGGCACTG+GGG - chr2_4:63556511-63556530 Msa0341700:intron 65.0%
GCAAGGGCAAGGGCAAGGGC+AGG - chr2_4:63553662-63553681 Msa0341700:three_prime_UTR 70.0%
CAAGGGCAAGGGCAGGGGCA+TGG - chr2_4:63553669-63553688 Msa0341700:three_prime_UTR 70.0%
TCCAGCTCCAGCTCCAGGGC+CGG + chr2_4:63556381-63556400 None:intergenic 70.0%
GCTGGAGCTGCTACCGGCAC+TGG - chr2_4:63556509-63556528 Msa0341700:intron 70.0%
CCAGCTCCAGCTCCAGGGCC+GGG + chr2_4:63556380-63556399 None:intergenic 75.0%
! CCCGGCCCTGGAGCTGGAGC+TGG - chr2_4:63556377-63556396 Msa0341700:intron 80.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 63553372 63557239 63553372 ID=Msa0341700;Name=Msa0341700
chr2_4 mRNA 63553372 63557239 63553372 ID=Msa0341700-mRNA-1;Parent=Msa0341700;Name=Msa0341700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=1958|1|1|1|1|1|2|326|138
chr2_4 exon 63553372 63555588 63553372 ID=Msa0341700-mRNA-1:exon:20300;Parent=Msa0341700-mRNA-1
chr2_4 exon 63556756 63557239 63556756 ID=Msa0341700-mRNA-1:exon:20299;Parent=Msa0341700-mRNA-1
chr2_4 five_prime_UTR 63556756 63557239 63556756 ID=Msa0341700-mRNA-1:five_prime_utr;Parent=Msa0341700-mRNA-1
chr2_4 five_prime_UTR 63554115 63555588 63554115 ID=Msa0341700-mRNA-1:five_prime_utr;Parent=Msa0341700-mRNA-1
chr2_4 CDS 63553698 63554114 63553698 ID=Msa0341700-mRNA-1:cds;Parent=Msa0341700-mRNA-1
chr2_4 three_prime_UTR 63553372 63553697 63553372 ID=Msa0341700-mRNA-1:three_prime_utr;Parent=Msa0341700-mRNA-1
Gene Sequence

>Msa0341700

ATGGCTACTGGAGCTGGAGCTGCTACCGGCACTGGGGACTTTACTGGTACTGGAACTGGAGTAGCTATTGGCACCGGTGAAACTACTGGAACTGGCGATACCACAGGCACTGGAACTATAACTGGTGCTGCAACTGGCACTGGTGATACCACTGGCACAGGAGCTGGAATACGTGAAACAACAGGAGCCGGAGAAGGAGCATGTGATGTGGCATTGGAGGAAGCAAGCAAAGACGGTGGCAAAATGACAGTGCTGATCTGCACCACTGAAATATTGTATGGTTGTGCCACAACAGCTTTAACCAAATTGGCACCTGTTCCATTAGGATCAGAAGGAGAGGTAAAAGTGACAGCACCTGTGCTAAGATCTGTGACTTTCATGAAACCCTCCGATCCCTTAGCTTGCCCACTGGATTGA

Protein sequence

>Msa0341700

MATGAGAATGTGDFTGTGTGVAIGTGETTGTGDTTGTGTITGAATGTGDTTGTGAGIRETTGAGEGACDVALEEASKDGGKMTVLICTTEILYGCATTALTKLAPVPLGSEGEVKVTAPVLRSVTFMKPSDPLACPLD*