Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0341700 | RHN76620.1 | 100.000 | 57 | 0 | 0 | 82 | 138 | 1 | 57 | 7.60e-32 | 117 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0093840 | Msa0341700 | 0.965874 | 3.571741e-125 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0341700 | MtrunA17_Chr2g0334071 | 100.000 | 57 | 0 | 0 | 82 | 138 | 1 | 57 | 6.99e-36 | 117 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 198 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAACAAATTTATGCATATT+TGG | 0.139534 | 2_4:-63556826 | Msa0341700:five_prime_UTR |
TACTCTCACAAATTATATTT+TGG | 0.159975 | 2_4:+63554717 | None:intergenic |
AGCGCAAGCAACTGCCTTTC+TGG | 0.190152 | 2_4:-63555449 | Msa0341700:five_prime_UTR |
AAATAGAACAATGACATTTC+TGG | 0.223530 | 2_4:-63554496 | Msa0341700:five_prime_UTR |
CTCCTATATATGTGCTATTA+TGG | 0.225343 | 2_4:-63554426 | Msa0341700:five_prime_UTR |
TAATACTTTACAAATAAAAT+TGG | 0.235179 | 2_4:-63555344 | Msa0341700:five_prime_UTR |
ATTGGAACTTAACCCGAATT+AGG | 0.246617 | 2_4:+63554986 | None:intergenic |
TAGTTTGATTTCCCATGTTC+TGG | 0.267157 | 2_4:-63553656 | Msa0341700:three_prime_UTR |
GCTGCAGACGGTCCCAATTC+AGG | 0.274322 | 2_4:+63554290 | None:intergenic |
TAATGGAACAGGTGCCAATT+TGG | 0.279667 | 2_4:+63553791 | None:intergenic |
TTATGTGAACCTTCCTAATT+CGG | 0.280390 | 2_4:-63554999 | Msa0341700:five_prime_UTR |
CACAACAGCTTTAACCAAAT+TGG | 0.282805 | 2_4:-63553805 | Msa0341700:CDS |
AAGGCAGTTGCTTGCGCTTA+TGG | 0.292633 | 2_4:+63555454 | None:intergenic |
AGACTTTATCACCCCTGAAT+TGG | 0.303446 | 2_4:-63554303 | Msa0341700:five_prime_UTR |
AGTTTATTTCGCTTGCTAGT+TGG | 0.307097 | 2_4:-63553503 | Msa0341700:three_prime_UTR |
TTTCGCTTGCTAGTTGGGTT+TGG | 0.308227 | 2_4:-63553497 | Msa0341700:three_prime_UTR |
TTCGCTTGCTAGTTGGGTTT+GGG | 0.308772 | 2_4:-63553496 | Msa0341700:three_prime_UTR |
GCAGTAACTATTCCTCAAAA+TGG | 0.310904 | 2_4:+63555148 | None:intergenic |
ACCTCTCCTTCTGATCCTAA+TGG | 0.312323 | 2_4:+63553774 | None:intergenic |
AGCATTGCAGTGCTAGTTCT+TGG | 0.316398 | 2_4:-63555285 | Msa0341700:five_prime_UTR |
GCTGGAGCTGCTACCGGCAC+TGG | 0.325350 | 2_4:-63554080 | Msa0341700:CDS |
GGACCGTCTGCAGCTTCATC+TGG | 0.330349 | 2_4:-63554281 | Msa0341700:five_prime_UTR |
ACCTTGTGTTGTGTGTTAAA+AGG | 0.330666 | 2_4:-63555067 | Msa0341700:five_prime_UTR |
CAATCTATGTGCTGCTGTCT+AGG | 0.336885 | 2_4:+63554366 | None:intergenic |
GTTTATTTCGCTTGCTAGTT+GGG | 0.346701 | 2_4:-63553502 | Msa0341700:three_prime_UTR |
AGATACTTCACCAAGACTTA+TGG | 0.347208 | 2_4:+63554834 | None:intergenic |
AAGGGCAAGGGCAAGGGCAG+GGG | 0.349176 | 2_4:-63556925 | Msa0341700:five_prime_UTR |
GCAGCTTCATCTGGATTTGT+AGG | 0.349857 | 2_4:-63554272 | Msa0341700:five_prime_UTR |
GAGTTAGTCTTGTAAGTTGC+AGG | 0.351307 | 2_4:-63554571 | Msa0341700:five_prime_UTR |
TATGTGAACCTTCCTAATTC+GGG | 0.363085 | 2_4:-63554998 | Msa0341700:five_prime_UTR |
GCTGGAGCTGGTACGGCAAC+TGG | 0.363344 | 2_4:-63554164 | Msa0341700:five_prime_UTR |
CAAGGGCAAGGGCAGGGGCA+TGG | 0.366059 | 2_4:-63556920 | Msa0341700:five_prime_UTR |
CCCGGCCCTGGAGCTGGAGC+TGG | 0.367306 | 2_4:-63554212 | Msa0341700:five_prime_UTR |
CACATAAATCAAGAGATATA+AGG | 0.370389 | 2_4:+63555015 | None:intergenic |
GCTGCAGCAGGTACGGCTAT+TGG | 0.372360 | 2_4:-63554134 | Msa0341700:five_prime_UTR |
TCAAAACAGGTTATAGATAA+GGG | 0.373172 | 2_4:-63553417 | Msa0341700:three_prime_UTR |
TAAAGTATTAAATTTGTGTT+TGG | 0.378924 | 2_4:+63555357 | None:intergenic |
ACCGGCACTGGGGACTTTAC+TGG | 0.380008 | 2_4:-63554068 | Msa0341700:CDS |
GACTTTATCACCCCTGAATT+GGG | 0.384717 | 2_4:-63554302 | Msa0341700:five_prime_UTR |
AACTGCTGTATGCAGGGTAT+TGG | 0.392302 | 2_4:-63553458 | Msa0341700:three_prime_UTR |
ATTGCGAGGAAGCTTTAGTA+TGG | 0.392622 | 2_4:+63555400 | None:intergenic |
GCAAGGGCAAGGGCAAGGGC+AGG | 0.392948 | 2_4:-63556927 | Msa0341700:five_prime_UTR |
ACAGGCACTGGAACTATAAC+TGG | 0.393725 | 2_4:-63553990 | Msa0341700:CDS |
AAATTGGCACCTGTTCCATT+AGG | 0.394123 | 2_4:-63553789 | Msa0341700:CDS |
GATATTCCCGGCCCTGGAGC+TGG | 0.394266 | 2_4:-63554218 | Msa0341700:five_prime_UTR |
ATTAATCATATAGGATATAT+AGG | 0.394860 | 2_4:-63554890 | Msa0341700:five_prime_UTR |
CTGGAGCTGCTACCGGCACT+GGG | 0.395926 | 2_4:-63554079 | Msa0341700:CDS |
GAAGCTCCAGCTCCAGCTCC+AGG | 0.398532 | 2_4:+63554206 | None:intergenic |
TGCTACTAGCGGCACTGGCC+TGG | 0.402795 | 2_4:-63556976 | Msa0341700:five_prime_UTR |
GTACATGTGAGAAAGATAAA+AGG | 0.406565 | 2_4:+63557063 | None:intergenic |
TATATTAACAAAATCATATG+AGG | 0.406749 | 2_4:-63555244 | Msa0341700:five_prime_UTR |
GACTTTACTGGTACTGGAAC+TGG | 0.406809 | 2_4:-63554056 | Msa0341700:CDS |
TGTGAAAATCACTTTCTGTA+AGG | 0.411240 | 2_4:-63554954 | Msa0341700:five_prime_UTR |
ACAGCAAAGCAGGTTTCATA+TGG | 0.412230 | 2_4:-63555115 | Msa0341700:five_prime_UTR |
TGCCCTTGCCCTTGCCTATG+TGG | 0.413272 | 2_4:+63556935 | None:intergenic |
TACTCAAACCTCACAAGCAT+TGG | 0.414367 | 2_4:-63554798 | Msa0341700:five_prime_UTR |
ACTGCTGTATGCAGGGTATT+GGG | 0.415322 | 2_4:-63553457 | Msa0341700:three_prime_UTR |
TCCAGCTCCAGCTCCAGGGC+CGG | 0.416867 | 2_4:+63554211 | None:intergenic |
ACCGGTGAAACTACTGGAAC+TGG | 0.417489 | 2_4:-63554020 | Msa0341700:CDS |
ACTATAACTGGTGCTGCAAC+TGG | 0.418376 | 2_4:-63553978 | Msa0341700:CDS |
GCTTCAACTGGTACGGGTAC+TGG | 0.421812 | 2_4:-63554188 | Msa0341700:five_prime_UTR |
GCTGGTACGGCAACTGGAGC+TGG | 0.423422 | 2_4:-63554158 | Msa0341700:five_prime_UTR |
GTCAAAACAGGTTATAGATA+AGG | 0.423730 | 2_4:-63553418 | Msa0341700:three_prime_UTR |
TGAGGTTTATCTCTTACAAC+TGG | 0.428414 | 2_4:-63555226 | Msa0341700:five_prime_UTR |
ACTCAAACCTCACAAGCATT+GGG | 0.429574 | 2_4:-63554797 | Msa0341700:five_prime_UTR |
AAAAGTAAGGAAGAGAGTTA+AGG | 0.430636 | 2_4:-63554339 | Msa0341700:five_prime_UTR |
CCAGCTCCAGCTCCAGGGCC+GGG | 0.435270 | 2_4:+63554212 | None:intergenic |
CGAGGAAGCTTTAGTATGGT+TGG | 0.440416 | 2_4:+63555404 | None:intergenic |
CCTTCTGATCCTAATGGAAC+AGG | 0.442019 | 2_4:+63553780 | None:intergenic |
CATAGGCAAGGGCAAGGGCA+AGG | 0.444965 | 2_4:-63556932 | Msa0341700:five_prime_UTR |
AAGAACTAGCACTGCAATGC+TGG | 0.448182 | 2_4:+63555287 | None:intergenic |
GCTGGTATGGCTACTGGAGC+TGG | 0.451632 | 2_4:-63554098 | Msa0341700:exon |
CAAGGGCAAGGGCAAGGGCA+GGG | 0.452394 | 2_4:-63556926 | Msa0341700:five_prime_UTR |
AGTGGGATGGCACCTATCTC+AGG | 0.453316 | 2_4:+63553561 | None:intergenic |
ACTGGAGCTGGAGCTGCAGC+AGG | 0.455752 | 2_4:-63554146 | Msa0341700:five_prime_UTR |
AGCTTTAGTATGGTTGGAGT+TGG | 0.457080 | 2_4:+63555410 | None:intergenic |
GCTGTAGCTGGTATGGCTAC+TGG | 0.462829 | 2_4:-63554104 | Msa0341700:exon |
ACTGGGGACTTTACTGGTAC+TGG | 0.463772 | 2_4:-63554062 | Msa0341700:CDS |
GCTTCCACAGGTGATATTCC+CGG | 0.467725 | 2_4:-63554230 | Msa0341700:five_prime_UTR |
TTGCCGTAACTGCTGTATGC+AGG | 0.468846 | 2_4:-63553465 | Msa0341700:three_prime_UTR |
GATACCACTGGCACAGGAGC+TGG | 0.473271 | 2_4:-63553948 | Msa0341700:CDS |
TACCATAATAGCACATATAT+AGG | 0.473334 | 2_4:+63554424 | None:intergenic |
ATTGGCACCGGTGAAACTAC+TGG | 0.476508 | 2_4:-63554026 | Msa0341700:CDS |
GGCATGGAAAGAACAAGAAA+TGG | 0.478139 | 2_4:-63556904 | Msa0341700:five_prime_UTR |
ATTGGAGCTGGAGCTGTAGC+TGG | 0.478768 | 2_4:-63554116 | Msa0341700:five_prime_UTR |
TACCCTGCATACAGCAGTTA+CGG | 0.479528 | 2_4:+63553462 | None:intergenic |
GCTGGAGCTGGAGCTTCAAC+TGG | 0.479614 | 2_4:-63554200 | Msa0341700:five_prime_UTR |
CTGCAGACGGTCCCAATTCA+GGG | 0.482412 | 2_4:+63554291 | None:intergenic |
TGTTGTGTGTTAAAAGGAGC+TGG | 0.483782 | 2_4:-63555061 | Msa0341700:five_prime_UTR |
ACTGGTACGGGTACTGGAGC+TGG | 0.485392 | 2_4:-63554182 | Msa0341700:five_prime_UTR |
ACAGGTGATATTCCCGGCCC+TGG | 0.487404 | 2_4:-63554224 | Msa0341700:five_prime_UTR |
GCAGGTACGGCTATTGGAGC+TGG | 0.489794 | 2_4:-63554128 | Msa0341700:five_prime_UTR |
TCAATCCAGTGGGCAAGCTA+AGG | 0.491495 | 2_4:+63553698 | None:intergenic |
AAATGATAAAATTTGATCAC+AGG | 0.492614 | 2_4:+63554636 | None:intergenic |
AGCTGGAGCTTCAACTGGTA+CGG | 0.493079 | 2_4:-63554195 | Msa0341700:five_prime_UTR |
TTGATTGCTACTAGCGGCAC+TGG | 0.496670 | 2_4:-63556981 | Msa0341700:five_prime_UTR |
ACTGGAACTGGAGTAGCTAT+TGG | 0.498938 | 2_4:-63554044 | Msa0341700:CDS |
TTGGTAGCTATTAATCATAT+AGG | 0.499472 | 2_4:-63554899 | Msa0341700:five_prime_UTR |
AGCTGGAGCTGCAGCAGGTA+CGG | 0.502806 | 2_4:-63554141 | Msa0341700:five_prime_UTR |
AGAGAATAGTGTTGCCACAT+AGG | 0.505315 | 2_4:-63556949 | Msa0341700:five_prime_UTR |
CACATCACATGCTCCTTCTC+CGG | 0.505499 | 2_4:+63553905 | None:intergenic |
TTGCTAGTTGGGTTTGGGTG+AGG | 0.506434 | 2_4:-63553491 | Msa0341700:three_prime_UTR |
GCTGGAATACGTGAAACAAC+AGG | 0.508392 | 2_4:-63553930 | Msa0341700:CDS |
CGATCCCTTAGCTTGCCCAC+TGG | 0.508993 | 2_4:-63553703 | Msa0341700:CDS |
TTGTGTGGTACAGGAGGAGC+AGG | 0.509693 | 2_4:-63555579 | Msa0341700:intron |
AGCTGGAGCTGTAGCTGGTA+TGG | 0.509977 | 2_4:-63554111 | Msa0341700:exon |
ACCTTCTTGATCACATCCAT+TGG | 0.511996 | 2_4:-63553588 | Msa0341700:three_prime_UTR |
AGGAGCATGTGATGTGGCAT+TGG | 0.512016 | 2_4:-63553898 | Msa0341700:CDS |
AGCACATTGTTTCAATCCAG+TGG | 0.514658 | 2_4:+63553687 | None:intergenic |
CAATTTGGTTAAAGCTGTTG+TGG | 0.515039 | 2_4:+63553806 | None:intergenic |
TCTTTAATTAACAGCAAAGC+AGG | 0.520053 | 2_4:-63555125 | Msa0341700:five_prime_UTR |
TACTGGAGCTGGAGCTGGTA+CGG | 0.523812 | 2_4:-63554171 | Msa0341700:five_prime_UTR |
GATACAATATGTATGAACTC+AGG | 0.525048 | 2_4:-63554549 | Msa0341700:five_prime_UTR |
ACTGGTGCGGGAGCTTCCAC+AGG | 0.527911 | 2_4:-63554242 | Msa0341700:five_prime_UTR |
ACTGGCGATACCACAGGCAC+TGG | 0.530919 | 2_4:-63554002 | Msa0341700:CDS |
ACTGGTGCTGCAACTGGCAC+TGG | 0.532604 | 2_4:-63553972 | Msa0341700:CDS |
GGATTTGTAGGAGATAATAC+TGG | 0.532991 | 2_4:-63554260 | Msa0341700:five_prime_UTR |
GGACATCCATCCATAAGTCT+TGG | 0.533357 | 2_4:-63554844 | Msa0341700:five_prime_UTR |
ACCAGTAAAGTCCCCAGTGC+CGG | 0.533495 | 2_4:+63554067 | None:intergenic |
GCAAGGCATAGACGCCTGAC+AGG | 0.537537 | 2_4:+63556788 | None:intergenic |
ATAGGCAAGGGCAAGGGCAA+GGG | 0.539153 | 2_4:-63556931 | Msa0341700:five_prime_UTR |
TGCCGTAACTGCTGTATGCA+GGG | 0.542098 | 2_4:-63553464 | Msa0341700:three_prime_UTR |
GCCAGTTCCAGTAGTTTCAC+CGG | 0.543123 | 2_4:+63554019 | None:intergenic |
ACTGGAGCTGGAGCTGCTAC+CGG | 0.543784 | 2_4:-63554086 | Msa0341700:CDS |
GAAACAACAGGAGCCGGAGA+AGG | 0.548703 | 2_4:-63553918 | Msa0341700:CDS |
CAATCCAGTGGGCAAGCTAA+GGG | 0.551114 | 2_4:+63553699 | None:intergenic |
TCATATAGGATATATAGGAT+TGG | 0.552029 | 2_4:-63554885 | Msa0341700:five_prime_UTR |
ATATAGAAACAGAAAGAGAA+AGG | 0.554596 | 2_4:+63557107 | None:intergenic |
CAAGATGATGTACAAACTTG+TGG | 0.560224 | 2_4:-63555543 | Msa0341700:five_prime_UTR |
TGCACCACTGAAATATTGTA+TGG | 0.560827 | 2_4:-63553834 | Msa0341700:CDS |
ATTTGATCACAGGTGAAACA+AGG | 0.562127 | 2_4:+63554646 | None:intergenic |
AGTAGTAGTGGAATTGAGAG+AGG | 0.562231 | 2_4:-63557171 | Msa0341700:five_prime_UTR |
AAGCTCCAGCTCCAGCTCCA+GGG | 0.563448 | 2_4:+63554207 | None:intergenic |
TTGCCACATAGGCAAGGGCA+AGG | 0.566012 | 2_4:-63556938 | Msa0341700:five_prime_UTR |
GAACTTAACCCGAATTAGGA+AGG | 0.566291 | 2_4:+63554990 | None:intergenic |
GCATTGGGGAGCCCATCATT+CGG | 0.566711 | 2_4:-63554782 | Msa0341700:five_prime_UTR |
AGCATGTGATGTGGCATTGG+AGG | 0.566773 | 2_4:-63553895 | Msa0341700:CDS |
TGAAGATGTACAAGTGATGT+GGG | 0.568556 | 2_4:-63555517 | Msa0341700:five_prime_UTR |
GCTGGAGCTTCAACTGGTAC+GGG | 0.569244 | 2_4:-63554194 | Msa0341700:five_prime_UTR |
CCTGTTCCATTAGGATCAGA+AGG | 0.569303 | 2_4:-63553780 | Msa0341700:CDS |
CAACACTATTCTCTTTGACC+AGG | 0.569671 | 2_4:+63556958 | None:intergenic |
GTAGGAGATAATACTGGTGC+GGG | 0.573004 | 2_4:-63554254 | Msa0341700:five_prime_UTR |
GAAGGACTCTATAGTAGTAG+TGG | 0.575338 | 2_4:-63557183 | Msa0341700:five_prime_UTR |
ATACGTGAAACAACAGGAGC+CGG | 0.575957 | 2_4:-63553924 | Msa0341700:CDS |
TGCTTGCAGTCGATAACAGT+GGG | 0.577246 | 2_4:+63553544 | None:intergenic |
AGACAGCAGCACATAGATTG+AGG | 0.579626 | 2_4:-63554363 | Msa0341700:five_prime_UTR |
ACTGGTGATACCACTGGCAC+AGG | 0.580287 | 2_4:-63553954 | Msa0341700:CDS |
CAAAGTAGTCGAGGATGACG+TGG | 0.581524 | 2_4:-63553620 | Msa0341700:three_prime_UTR |
ACGGGTACTGGAGCTGGAGC+TGG | 0.582105 | 2_4:-63554176 | Msa0341700:five_prime_UTR |
TTTGAACATCAAAGTAGTCG+AGG | 0.585179 | 2_4:-63553629 | Msa0341700:three_prime_UTR |
TCATGAATAGATATTATACA+TGG | 0.587754 | 2_4:-63554390 | Msa0341700:five_prime_UTR |
TGTGATTAAAAGTAAAGTGA+AGG | 0.587990 | 2_4:-63554670 | Msa0341700:five_prime_UTR |
TGTAGGAGATAATACTGGTG+CGG | 0.592825 | 2_4:-63554255 | Msa0341700:five_prime_UTR |
GCACATTGTTTCAATCCAGT+GGG | 0.593204 | 2_4:+63553688 | None:intergenic |
CATACAAAGACTCTCCAGAA+AGG | 0.593758 | 2_4:+63555435 | None:intergenic |
ATACAATATGTATGAACTCA+GGG | 0.595577 | 2_4:-63554548 | Msa0341700:five_prime_UTR |
TGGGCTCCCCAATGCTTGTG+AGG | 0.596428 | 2_4:+63554790 | None:intergenic |
TTGGAGGAAGCAAGCAAAGA+CGG | 0.598325 | 2_4:-63553879 | Msa0341700:CDS |
ACCAATGGATGTGATCAAGA+AGG | 0.598927 | 2_4:+63553587 | None:intergenic |
AGTTATAGTTCCAGTGCCTG+TGG | 0.602983 | 2_4:+63553992 | None:intergenic |
ATAGTGTTGCCACATAGGCA+AGG | 0.603679 | 2_4:-63556944 | Msa0341700:five_prime_UTR |
ACTGGAACTGGCGATACCAC+AGG | 0.604063 | 2_4:-63554008 | Msa0341700:CDS |
ACTGGATTGAAACAATGTGC+TGG | 0.606473 | 2_4:-63553685 | Msa0341700:exon |
ACTGGCACTGGTGATACCAC+TGG | 0.606553 | 2_4:-63553960 | Msa0341700:CDS |
ATGAAGATGTACAAGTGATG+TGG | 0.606676 | 2_4:-63555518 | Msa0341700:five_prime_UTR |
TGGTACAGGAGGAGCAGGAT+TGG | 0.606763 | 2_4:-63555574 | Msa0341700:intron |
CAGTGGGCAAGCTAAGGGAT+CGG | 0.607003 | 2_4:+63553704 | None:intergenic |
TATTCCAGCTCCTGTGCCAG+TGG | 0.610040 | 2_4:+63553944 | None:intergenic |
AAATAAATAAATAAATGTGA+AGG | 0.610708 | 2_4:-63557201 | Msa0341700:five_prime_UTR |
TGCAGTCGATAACAGTGGGA+TGG | 0.613260 | 2_4:+63553548 | None:intergenic |
TAGTGTTGCCACATAGGCAA+GGG | 0.614827 | 2_4:-63556943 | Msa0341700:five_prime_UTR |
AAAGTCACAGATCTTAGCAC+AGG | 0.615864 | 2_4:+63553738 | None:intergenic |
TTTCTGTAAGGTATGAGTGA+TGG | 0.621732 | 2_4:-63554942 | Msa0341700:five_prime_UTR |
ACCTATCTCAGGAAAACCAA+TGG | 0.626354 | 2_4:+63553572 | None:intergenic |
TGGATGCAGAAAATTAGCAA+TGG | 0.628377 | 2_4:-63554865 | Msa0341700:five_prime_UTR |
ACTGGAGTAGCTATTGGCAC+CGG | 0.628623 | 2_4:-63554038 | Msa0341700:CDS |
ACTTCACCAAGACTTATGGA+TGG | 0.629003 | 2_4:+63554838 | None:intergenic |
CGGAGAAGGAGCATGTGATG+TGG | 0.635216 | 2_4:-63553904 | Msa0341700:CDS |
GCAGTTGCTTGCGCTTATGG+TGG | 0.635788 | 2_4:+63555457 | None:intergenic |
TGGGCAAGCTAAGGGATCGG+AGG | 0.637132 | 2_4:+63553707 | None:intergenic |
ATTGATTTGATTGCTACTAG+CGG | 0.638632 | 2_4:-63556987 | Msa0341700:five_prime_UTR |
TCCATTAGGATCAGAAGGAG+AGG | 0.640280 | 2_4:-63553775 | Msa0341700:CDS |
GGGCAAGCTAAGGGATCGGA+GGG | 0.640825 | 2_4:+63553708 | None:intergenic |
AAGACAGTAGTAGTATCATG+TGG | 0.645963 | 2_4:-63556866 | Msa0341700:five_prime_UTR |
TTTGATCACAGGTGAAACAA+GGG | 0.648496 | 2_4:+63554647 | None:intergenic |
CTCAAACCTCACAAGCATTG+GGG | 0.654772 | 2_4:-63554796 | Msa0341700:five_prime_UTR |
TGCAGACGGTCCCAATTCAG+GGG | 0.663383 | 2_4:+63554292 | None:intergenic |
AGTGTGATTTGAAGATTGCG+AGG | 0.667949 | 2_4:+63555386 | None:intergenic |
ACAACCATACAATATTTCAG+TGG | 0.668094 | 2_4:+63553830 | None:intergenic |
TGATACGGGTAGATAGAGCA+AGG | 0.670563 | 2_4:+63556771 | None:intergenic |
TGCCACATAGGCAAGGGCAA+GGG | 0.671240 | 2_4:-63556937 | Msa0341700:five_prime_UTR |
AATCCAGATGAAGCTGCAGA+CGG | 0.674003 | 2_4:+63554278 | None:intergenic |
GTGCTTGCAGTCGATAACAG+TGG | 0.684221 | 2_4:+63553543 | None:intergenic |
AGGGCCGGGAATATCACCTG+TGG | 0.684521 | 2_4:+63554226 | None:intergenic |
ACAGTAGTAGTATCATGTGG+AGG | 0.690266 | 2_4:-63556863 | Msa0341700:five_prime_UTR |
TGGAGCTGCTACCGGCACTG+GGG | 0.700984 | 2_4:-63554078 | Msa0341700:CDS |
GTGAGAAAGATAAAAGGACA+AGG | 0.702650 | 2_4:+63557069 | None:intergenic |
GAGGAAGCAAGCAAAGACGG+TGG | 0.751539 | 2_4:-63553876 | Msa0341700:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAATAATAATTTATAA+TGG | + | chr2_4:63554256-63554275 | None:intergenic | 0.0% |
!! | AAATAAATAAATAAATGTGA+AGG | - | chr2_4:63553388-63553407 | Msa0341700:three_prime_UTR | 10.0% |
!!! | CTTCTTAATTTTATTATTTT+TGG | - | chr2_4:63554031-63554050 | Msa0341700:CDS | 10.0% |
!!! | TTATTTTATTTTATACCTTT+CGG | - | chr2_4:63554266-63554285 | Msa0341700:five_prime_UTR | 10.0% |
!! | AAATATGTTGTTAATTAAAT+TGG | + | chr2_4:63554300-63554319 | None:intergenic | 10.0% |
!! | ATAGTACAATATTTATTTAA+GGG | + | chr2_4:63554355-63554374 | None:intergenic | 10.0% |
!! | TATAGTACAATATTTATTTA+AGG | + | chr2_4:63554356-63554375 | None:intergenic | 10.0% |
!! | TAATACTTTACAAATAAAAT+TGG | - | chr2_4:63555245-63555264 | Msa0341700:five_prime_UTR | 10.0% |
!! | GTATATAATTATAATTTCCA+TGG | + | chr2_4:63553919-63553938 | None:intergenic | 15.0% |
!! | TAATTAAGTATATAGTTGAA+TGG | - | chr2_4:63554080-63554099 | Msa0341700:CDS | 15.0% |
!! | TACATCATATTAATAATTGA+TGG | - | chr2_4:63554648-63554667 | Msa0341700:five_prime_UTR | 15.0% |
!!! | TAAAGTATTAAATTTGTGTT+TGG | + | chr2_4:63555235-63555254 | None:intergenic | 15.0% |
!! | TATATTAACAAAATCATATG+AGG | - | chr2_4:63555345-63555364 | Msa0341700:five_prime_UTR | 15.0% |
!!! | ATTTTCACAAATCTAATAAT+TGG | + | chr2_4:63555624-63555643 | None:intergenic | 15.0% |
!! | ATTAATCATATAGGATATAT+AGG | - | chr2_4:63555699-63555718 | Msa0341700:intron | 15.0% |
!! | ACAACAAATTTATGCATATT+TGG | - | chr2_4:63553763-63553782 | Msa0341700:CDS | 20.0% |
!! | ATAATTATAATTTCCATGGA+TGG | + | chr2_4:63553915-63553934 | None:intergenic | 20.0% |
!! | TTATTTAAGGGAAAAAACTT+AGG | + | chr2_4:63554343-63554362 | None:intergenic | 20.0% |
!! | TGTAAGAATTACACAAAAAA+GGG | + | chr2_4:63554632-63554651 | None:intergenic | 20.0% |
!! | ATGTAAGAATTACACAAAAA+AGG | + | chr2_4:63554633-63554652 | None:intergenic | 20.0% |
!!! | TACTCTCACAAATTATATTT+TGG | + | chr2_4:63555875-63555894 | None:intergenic | 20.0% |
!! | AAATGATAAAATTTGATCAC+AGG | + | chr2_4:63555956-63555975 | None:intergenic | 20.0% |
!! | TCATGAATAGATATTATACA+TGG | - | chr2_4:63556199-63556218 | Msa0341700:intron | 20.0% |
!!! | TATTTTTGTTATGTCAAAAC+AGG | - | chr2_4:63557159-63557178 | Msa0341700:five_prime_UTR | 20.0% |
! | ATATAGAAACAGAAAGAGAA+AGG | + | chr2_4:63553485-63553504 | None:intergenic | 25.0% |
!!! | AATAAATAGTACCGTTTTTG+CGG | + | chr2_4:63553848-63553867 | None:intergenic | 25.0% |
! | CGTACAAATTATATATGTTG+CGG | + | chr2_4:63554004-63554023 | None:intergenic | 25.0% |
! | TAAGTATATAGTTGAATGGA+TGG | - | chr2_4:63554084-63554103 | Msa0341700:CDS | 25.0% |
! | TTAATATTACATAAGCACAC+AGG | - | chr2_4:63554187-63554206 | Msa0341700:five_prime_UTR | 25.0% |
! | TACAAAATACATGATACAAG+TGG | - | chr2_4:63554381-63554400 | Msa0341700:five_prime_UTR | 25.0% |
! | TGTATACTAGTATAGTATAG+GGG | + | chr2_4:63554561-63554580 | None:intergenic | 25.0% |
! | GTGTATACTAGTATAGTATA+GGG | + | chr2_4:63554562-63554581 | None:intergenic | 25.0% |
! | CTATACTATACTAGTATACA+CGG | - | chr2_4:63554561-63554580 | Msa0341700:five_prime_UTR | 25.0% |
! | GATATGATACTTTAGGTAAA+TGG | - | chr2_4:63554673-63554692 | Msa0341700:five_prime_UTR | 25.0% |
! | ATACTTTAGGTAAATGGAAA+GGG | - | chr2_4:63554679-63554698 | Msa0341700:five_prime_UTR | 25.0% |
! | AGGTTACCAAAAAGTTAAAT+GGG | + | chr2_4:63555557-63555576 | None:intergenic | 25.0% |
! | AAGGTTACCAAAAAGTTAAA+TGG | + | chr2_4:63555558-63555577 | None:intergenic | 25.0% |
! | CACATAAATCAAGAGATATA+AGG | + | chr2_4:63555577-63555596 | None:intergenic | 25.0% |
!! | ACAAAAATTTTGTCAAGTCT+TGG | - | chr2_4:63555671-63555690 | Msa0341700:intron | 25.0% |
!! | TTGGTAGCTATTAATCATAT+AGG | - | chr2_4:63555690-63555709 | Msa0341700:intron | 25.0% |
! | TCATATAGGATATATAGGAT+TGG | - | chr2_4:63555704-63555723 | Msa0341700:intron | 25.0% |
!! | CAAAAGTTCTCTTTCTTTTA+TGG | - | chr2_4:63555835-63555854 | Msa0341700:intron | 25.0% |
!!! | TTCACTTTACTTTTAATCAC+AGG | + | chr2_4:63555920-63555939 | None:intergenic | 25.0% |
! | TGTGATTAAAAGTAAAGTGA+AGG | - | chr2_4:63555919-63555938 | Msa0341700:intron | 25.0% |
! | ATACAATATGTATGAACTCA+GGG | - | chr2_4:63556041-63556060 | Msa0341700:intron | 25.0% |
! | AAATAGAACAATGACATTTC+TGG | - | chr2_4:63556093-63556112 | Msa0341700:intron | 25.0% |
! | TACCATAATAGCACATATAT+AGG | + | chr2_4:63556168-63556187 | None:intergenic | 25.0% |
! | TCAAAACAGGTTATAGATAA+GGG | - | chr2_4:63557172-63557191 | Msa0341700:five_prime_UTR | 25.0% |
GTACATGTGAGAAAGATAAA+AGG | + | chr2_4:63553529-63553548 | None:intergenic | 30.0% | |
AAGAAGAAGAAGAAGAAAGT+AGG | - | chr2_4:63553572-63553591 | Msa0341700:three_prime_UTR | 30.0% | |
!! | ATTGATTTGATTGCTACTAG+CGG | - | chr2_4:63553602-63553621 | Msa0341700:three_prime_UTR | 30.0% |
! | AAACTATGATTTTTCCTGTC+AGG | - | chr2_4:63553787-63553806 | Msa0341700:CDS | 30.0% |
ATACAATTACAAACCATCCA+TGG | - | chr2_4:63553899-63553918 | Msa0341700:CDS | 30.0% | |
ATTGACACTGATCATCATAA+TGG | + | chr2_4:63554151-63554170 | None:intergenic | 30.0% | |
TCAGTGTCAATATTTGCTTT+CGG | - | chr2_4:63554160-63554179 | Msa0341700:five_prime_UTR | 30.0% | |
AATTTGTCATGAACTTGAAG+TGG | + | chr2_4:63554213-63554232 | None:intergenic | 30.0% | |
TTTATAATGGCATTAGACGT+AGG | + | chr2_4:63554243-63554262 | None:intergenic | 30.0% | |
! | TTAACAACATATTTTCAGCC+AGG | - | chr2_4:63554306-63554325 | Msa0341700:five_prime_UTR | 30.0% |
! | ATATTTTCAGCCAGGATATA+CGG | - | chr2_4:63554314-63554333 | Msa0341700:five_prime_UTR | 30.0% |
TTTAAGGGAAAAAACTTAGG+TGG | + | chr2_4:63554340-63554359 | None:intergenic | 30.0% | |
AAAATACATGATACAAGTGG+TGG | - | chr2_4:63554384-63554403 | Msa0341700:five_prime_UTR | 30.0% | |
CGTGTATACTAGTATAGTAT+AGG | + | chr2_4:63554563-63554582 | None:intergenic | 30.0% | |
GATGGATGATATGATACTTT+AGG | - | chr2_4:63554666-63554685 | Msa0341700:five_prime_UTR | 30.0% | |
GATACTTTAGGTAAATGGAA+AGG | - | chr2_4:63554678-63554697 | Msa0341700:five_prime_UTR | 30.0% | |
TACTTTAGGTAAATGGAAAG+GGG | - | chr2_4:63554680-63554699 | Msa0341700:five_prime_UTR | 30.0% | |
ATTCTCTACAGATACTTCTT+GGG | + | chr2_4:63554911-63554930 | None:intergenic | 30.0% | |
TATTCTCTACAGATACTTCT+TGG | + | chr2_4:63554912-63554931 | None:intergenic | 30.0% | |
TACATGCATGATTGAATGTA+AGG | + | chr2_4:63554973-63554992 | None:intergenic | 30.0% | |
! | TACTCAATAACTCCATTTTG+AGG | - | chr2_4:63555429-63555448 | Msa0341700:five_prime_UTR | 30.0% |
TCTTTAATTAACAGCAAAGC+AGG | - | chr2_4:63555464-63555483 | Msa0341700:five_prime_UTR | 30.0% | |
TTATGTGAACCTTCCTAATT+CGG | - | chr2_4:63555590-63555609 | Msa0341700:intron | 30.0% | |
TGTGAAAATCACTTTCTGTA+AGG | - | chr2_4:63555635-63555654 | Msa0341700:intron | 30.0% | |
! | CTTTTGTATTACCGAATGAT+GGG | + | chr2_4:63555821-63555840 | None:intergenic | 30.0% |
! | ACTTTTGTATTACCGAATGA+TGG | + | chr2_4:63555822-63555841 | None:intergenic | 30.0% |
!! | ACTTTACTTTTAATCACAGG+TGG | + | chr2_4:63555917-63555936 | None:intergenic | 30.0% |
GATACAATATGTATGAACTC+AGG | - | chr2_4:63556040-63556059 | Msa0341700:intron | 30.0% | |
! | CTCCTATATATGTGCTATTA+TGG | - | chr2_4:63556163-63556182 | Msa0341700:intron | 30.0% |
CATAGATTGAGGAAAAAGTA+AGG | - | chr2_4:63556237-63556256 | Msa0341700:intron | 30.0% | |
AAAAGTAAGGAAGAGAGTTA+AGG | - | chr2_4:63556250-63556269 | Msa0341700:intron | 30.0% | |
ACAACCATACAATATTTCAG+TGG | + | chr2_4:63556762-63556781 | None:intergenic | 30.0% | |
GTTCAAAAATTCCAGAACAT+GGG | + | chr2_4:63556947-63556966 | None:intergenic | 30.0% | |
TGTTCAAAAATTCCAGAACA+TGG | + | chr2_4:63556948-63556967 | None:intergenic | 30.0% | |
GTCAAAACAGGTTATAGATA+AGG | - | chr2_4:63557171-63557190 | Msa0341700:five_prime_UTR | 30.0% | |
GTGAGAAAGATAAAAGGACA+AGG | + | chr2_4:63553523-63553542 | None:intergenic | 35.0% | |
AAGACAGTAGTAGTATCATG+TGG | - | chr2_4:63553723-63553742 | Msa0341700:CDS | 35.0% | |
ACAAACTTGATCTTGCTTTC+AGG | - | chr2_4:63553969-63553988 | Msa0341700:CDS | 35.0% | |
TGATCATCATAATGGTTGGT+TGG | + | chr2_4:63554143-63554162 | None:intergenic | 35.0% | |
ACACTGATCATCATAATGGT+TGG | + | chr2_4:63554147-63554166 | None:intergenic | 35.0% | |
AAGTTGCACTGAAAAAGATG+TGG | + | chr2_4:63554467-63554486 | None:intergenic | 35.0% | |
TTTATACCACTTTCATCGTG+CGG | - | chr2_4:63554485-63554504 | Msa0341700:five_prime_UTR | 35.0% | |
!! | ATGCTTCAAAAAGTGTCCTA+TGG | - | chr2_4:63554589-63554608 | Msa0341700:five_prime_UTR | 35.0% |
! | CACAAGATTTTCTCCTTCTT+GGG | + | chr2_4:63554717-63554736 | None:intergenic | 35.0% |
! | ACACAAGATTTTCTCCTTCT+TGG | + | chr2_4:63554718-63554737 | None:intergenic | 35.0% |
AAGAAGGAGAAAATCTTGTG+TGG | - | chr2_4:63554717-63554736 | Msa0341700:five_prime_UTR | 35.0% | |
AAAAAGAGAAGAGAGAGAAG+AGG | - | chr2_4:63554779-63554798 | Msa0341700:five_prime_UTR | 35.0% | |
AAAAGAGAAGAGAGAGAAGA+GGG | - | chr2_4:63554780-63554799 | Msa0341700:five_prime_UTR | 35.0% | |
GTGACCAAAACCAAAATTCT+TGG | - | chr2_4:63554861-63554880 | Msa0341700:five_prime_UTR | 35.0% | |
!!! | AGGACCAAGAATTTTGGTTT+TGG | + | chr2_4:63554868-63554887 | None:intergenic | 35.0% |
AAAACCAAAATTCTTGGTCC+TGG | - | chr2_4:63554867-63554886 | Msa0341700:five_prime_UTR | 35.0% | |
TTCTCTACAGATACTTCTTG+GGG | + | chr2_4:63554910-63554929 | None:intergenic | 35.0% | |
CAAGATGATGTACAAACTTG+TGG | - | chr2_4:63555046-63555065 | Msa0341700:five_prime_UTR | 35.0% | |
ATGAAGATGTACAAGTGATG+TGG | - | chr2_4:63555071-63555090 | Msa0341700:five_prime_UTR | 35.0% | |
TGAAGATGTACAAGTGATGT+GGG | - | chr2_4:63555072-63555091 | Msa0341700:five_prime_UTR | 35.0% | |
TGAGGTTTATCTCTTACAAC+TGG | - | chr2_4:63555363-63555382 | Msa0341700:five_prime_UTR | 35.0% | |
GCAGTAACTATTCCTCAAAA+TGG | + | chr2_4:63555444-63555463 | None:intergenic | 35.0% | |
ACCTTGTGTTGTGTGTTAAA+AGG | - | chr2_4:63555522-63555541 | Msa0341700:five_prime_UTR | 35.0% | |
! | TCCTTTTAACACACAACACA+AGG | + | chr2_4:63555526-63555545 | None:intergenic | 35.0% |
TATGTGAACCTTCCTAATTC+GGG | - | chr2_4:63555591-63555610 | Msa0341700:intron | 35.0% | |
ATTGGAACTTAACCCGAATT+AGG | + | chr2_4:63555606-63555625 | None:intergenic | 35.0% | |
TTTCTGTAAGGTATGAGTGA+TGG | - | chr2_4:63555647-63555666 | Msa0341700:intron | 35.0% | |
TGGATGCAGAAAATTAGCAA+TGG | - | chr2_4:63555724-63555743 | Msa0341700:intron | 35.0% | |
AGATACTTCACCAAGACTTA+TGG | + | chr2_4:63555758-63555777 | None:intergenic | 35.0% | |
TTTGATCACAGGTGAAACAA+GGG | + | chr2_4:63555945-63555964 | None:intergenic | 35.0% | |
ATTTGATCACAGGTGAAACA+AGG | + | chr2_4:63555946-63555965 | None:intergenic | 35.0% | |
GGATTTGTAGGAGATAATAC+TGG | - | chr2_4:63556329-63556348 | Msa0341700:intron | 35.0% | |
TGCACCACTGAAATATTGTA+TGG | - | chr2_4:63556755-63556774 | Msa0341700:intron | 35.0% | |
CAATTTGGTTAAAGCTGTTG+TGG | + | chr2_4:63556786-63556805 | None:intergenic | 35.0% | |
! | CACAACAGCTTTAACCAAAT+TGG | - | chr2_4:63556784-63556803 | Msa0341700:five_prime_UTR | 35.0% |
! | TAGTTTGATTTCCCATGTTC+TGG | - | chr2_4:63556933-63556952 | Msa0341700:five_prime_UTR | 35.0% |
TTTGAACATCAAAGTAGTCG+AGG | - | chr2_4:63556960-63556979 | Msa0341700:five_prime_UTR | 35.0% | |
! | AGTTTATTTCGCTTGCTAGT+TGG | - | chr2_4:63557086-63557105 | Msa0341700:five_prime_UTR | 35.0% |
! | GTTTATTTCGCTTGCTAGTT+GGG | - | chr2_4:63557087-63557106 | Msa0341700:five_prime_UTR | 35.0% |
GAAGGACTCTATAGTAGTAG+TGG | - | chr2_4:63553406-63553425 | Msa0341700:three_prime_UTR | 40.0% | |
! | AGTAGTAGTGGAATTGAGAG+AGG | - | chr2_4:63553418-63553437 | Msa0341700:three_prime_UTR | 40.0% |
CAACACTATTCTCTTTGACC+AGG | + | chr2_4:63553634-63553653 | None:intergenic | 40.0% | |
AGAGAATAGTGTTGCCACAT+AGG | - | chr2_4:63553640-63553659 | Msa0341700:three_prime_UTR | 40.0% | |
GGCATGGAAAGAACAAGAAA+TGG | - | chr2_4:63553685-63553704 | Msa0341700:exon | 40.0% | |
ACAGTAGTAGTATCATGTGG+AGG | - | chr2_4:63553726-63553745 | Msa0341700:CDS | 40.0% | |
!! | AAATAGTACCGTTTTTGCGG+TGG | + | chr2_4:63553845-63553864 | None:intergenic | 40.0% |
! | ATAATGGTTGGTTGGTTGGT+TGG | + | chr2_4:63554135-63554154 | None:intergenic | 40.0% |
! | CATCATAATGGTTGGTTGGT+TGG | + | chr2_4:63554139-63554158 | None:intergenic | 40.0% |
AAATTGGTTGTGATGCCGAA+AGG | + | chr2_4:63554284-63554303 | None:intergenic | 40.0% | |
! | TTGACGTAGCTTAGCTTTCA+GGG | + | chr2_4:63554513-63554532 | None:intergenic | 40.0% |
! | TTTGACGTAGCTTAGCTTTC+AGG | + | chr2_4:63554514-63554533 | None:intergenic | 40.0% |
CCTGTCTGTCATTAAACCAT+AGG | + | chr2_4:63554608-63554627 | None:intergenic | 40.0% | |
CCTATGGTTTAATGACAGAC+AGG | - | chr2_4:63554605-63554624 | Msa0341700:five_prime_UTR | 40.0% | |
! | AGATTTTCTCCTTCTTGGGA+GGG | + | chr2_4:63554713-63554732 | None:intergenic | 40.0% |
! | AAGATTTTCTCCTTCTTGGG+AGG | + | chr2_4:63554714-63554733 | None:intergenic | 40.0% |
AAGAGGGAAGAGAGAGAAAA+TGG | - | chr2_4:63554796-63554815 | Msa0341700:five_prime_UTR | 40.0% | |
GACATGAGTACATGTTTGTG+TGG | - | chr2_4:63554995-63555014 | Msa0341700:five_prime_UTR | 40.0% | |
AGTACATGTTTGTGTGGTAC+AGG | - | chr2_4:63555001-63555020 | Msa0341700:five_prime_UTR | 40.0% | |
CATACAAAGACTCTCCAGAA+AGG | + | chr2_4:63555157-63555176 | None:intergenic | 40.0% | |
! | AGCTTTAGTATGGTTGGAGT+TGG | + | chr2_4:63555182-63555201 | None:intergenic | 40.0% |
! | ATTGCGAGGAAGCTTTAGTA+TGG | + | chr2_4:63555192-63555211 | None:intergenic | 40.0% |
AGTGTGATTTGAAGATTGCG+AGG | + | chr2_4:63555206-63555225 | None:intergenic | 40.0% | |
ACAGCAAAGCAGGTTTCATA+TGG | - | chr2_4:63555474-63555493 | Msa0341700:five_prime_UTR | 40.0% | |
TGTTGTGTGTTAAAAGGAGC+TGG | - | chr2_4:63555528-63555547 | Msa0341700:five_prime_UTR | 40.0% | |
!! | TGGCTGCCCATTTAACTTTT+TGG | - | chr2_4:63555548-63555567 | Msa0341700:five_prime_UTR | 40.0% |
GAACTTAACCCGAATTAGGA+AGG | + | chr2_4:63555602-63555621 | None:intergenic | 40.0% | |
ACTTCACCAAGACTTATGGA+TGG | + | chr2_4:63555754-63555773 | None:intergenic | 40.0% | |
TACTCAAACCTCACAAGCAT+TGG | - | chr2_4:63555791-63555810 | Msa0341700:intron | 40.0% | |
ACTCAAACCTCACAAGCATT+GGG | - | chr2_4:63555792-63555811 | Msa0341700:intron | 40.0% | |
!! | GAGTTAGTCTTGTAAGTTGC+AGG | - | chr2_4:63556018-63556037 | Msa0341700:intron | 40.0% |
AGACTTTATCACCCCTGAAT+TGG | - | chr2_4:63556286-63556305 | Msa0341700:intron | 40.0% | |
GACTTTATCACCCCTGAATT+GGG | - | chr2_4:63556287-63556306 | Msa0341700:intron | 40.0% | |
TGTAGGAGATAATACTGGTG+CGG | - | chr2_4:63556334-63556353 | Msa0341700:intron | 40.0% | |
TAATGGAACAGGTGCCAATT+TGG | + | chr2_4:63556801-63556820 | None:intergenic | 40.0% | |
AAATTGGCACCTGTTCCATT+AGG | - | chr2_4:63556800-63556819 | Msa0341700:five_prime_UTR | 40.0% | |
AAAGTCACAGATCTTAGCAC+AGG | + | chr2_4:63556854-63556873 | None:intergenic | 40.0% | |
GCACATTGTTTCAATCCAGT+GGG | + | chr2_4:63556904-63556923 | None:intergenic | 40.0% | |
AGCACATTGTTTCAATCCAG+TGG | + | chr2_4:63556905-63556924 | None:intergenic | 40.0% | |
ACTGGATTGAAACAATGTGC+TGG | - | chr2_4:63556904-63556923 | Msa0341700:five_prime_UTR | 40.0% | |
ACCTTCTTGATCACATCCAT+TGG | - | chr2_4:63557001-63557020 | Msa0341700:five_prime_UTR | 40.0% | |
ACCAATGGATGTGATCAAGA+AGG | + | chr2_4:63557005-63557024 | None:intergenic | 40.0% | |
!!! | TCCATTGGTTTTCCTGAGAT+AGG | - | chr2_4:63557016-63557035 | Msa0341700:five_prime_UTR | 40.0% |
ACCTATCTCAGGAAAACCAA+TGG | + | chr2_4:63557020-63557039 | None:intergenic | 40.0% | |
ATAGTGTTGCCACATAGGCA+AGG | - | chr2_4:63553645-63553664 | Msa0341700:three_prime_UTR | 45.0% | |
TAGTGTTGCCACATAGGCAA+GGG | - | chr2_4:63553646-63553665 | Msa0341700:three_prime_UTR | 45.0% | |
TGATACGGGTAGATAGAGCA+AGG | + | chr2_4:63553821-63553840 | None:intergenic | 45.0% | |
!! | GTTTTTGCGGTGGTTGATAC+GGG | + | chr2_4:63553835-63553854 | None:intergenic | 45.0% |
!! | CGTTTTTGCGGTGGTTGATA+CGG | + | chr2_4:63553836-63553855 | None:intergenic | 45.0% |
CGTATCAACCACCGCAAAAA+CGG | - | chr2_4:63553834-63553853 | Msa0341700:CDS | 45.0% | |
GAGAAAATCTTGTGTGGTCC+TGG | - | chr2_4:63554723-63554742 | Msa0341700:five_prime_UTR | 45.0% | |
! | TGGACCAGGACCAAGAATTT+TGG | + | chr2_4:63554874-63554893 | None:intergenic | 45.0% |
ACATGTTTGTGTGGTACAGG+AGG | - | chr2_4:63555004-63555023 | Msa0341700:five_prime_UTR | 45.0% | |
! | CGAGGAAGCTTTAGTATGGT+TGG | + | chr2_4:63555188-63555207 | None:intergenic | 45.0% |
AAGAACTAGCACTGCAATGC+TGG | + | chr2_4:63555305-63555324 | None:intergenic | 45.0% | |
! | AGCATTGCAGTGCTAGTTCT+TGG | - | chr2_4:63555304-63555323 | Msa0341700:five_prime_UTR | 45.0% |
GGACATCCATCCATAAGTCT+TGG | - | chr2_4:63555745-63555764 | Msa0341700:intron | 45.0% | |
! | CTCAAACCTCACAAGCATTG+GGG | - | chr2_4:63555793-63555812 | Msa0341700:intron | 45.0% |
! | CAATCTATGTGCTGCTGTCT+AGG | + | chr2_4:63556226-63556245 | None:intergenic | 45.0% |
AGACAGCAGCACATAGATTG+AGG | - | chr2_4:63556226-63556245 | Msa0341700:intron | 45.0% | |
AATCCAGATGAAGCTGCAGA+CGG | + | chr2_4:63556314-63556333 | None:intergenic | 45.0% | |
GCAGCTTCATCTGGATTTGT+AGG | - | chr2_4:63556317-63556336 | Msa0341700:intron | 45.0% | |
GTAGGAGATAATACTGGTGC+GGG | - | chr2_4:63556335-63556354 | Msa0341700:intron | 45.0% | |
! | GACTTTACTGGTACTGGAAC+TGG | - | chr2_4:63556533-63556552 | Msa0341700:intron | 45.0% |
ACTGGAACTGGAGTAGCTAT+TGG | - | chr2_4:63556545-63556564 | Msa0341700:intron | 45.0% | |
AGTTATAGTTCCAGTGCCTG+TGG | + | chr2_4:63556600-63556619 | None:intergenic | 45.0% | |
!! | ACAGGCACTGGAACTATAAC+TGG | - | chr2_4:63556599-63556618 | Msa0341700:intron | 45.0% |
!! | ACTATAACTGGTGCTGCAAC+TGG | - | chr2_4:63556611-63556630 | Msa0341700:intron | 45.0% |
GCTGGAATACGTGAAACAAC+AGG | - | chr2_4:63556659-63556678 | Msa0341700:intron | 45.0% | |
ATACGTGAAACAACAGGAGC+CGG | - | chr2_4:63556665-63556684 | Msa0341700:intron | 45.0% | |
TTGGAGGAAGCAAGCAAAGA+CGG | - | chr2_4:63556710-63556729 | Msa0341700:intron | 45.0% | |
CCTTCTGATCCTAATGGAAC+AGG | + | chr2_4:63556812-63556831 | None:intergenic | 45.0% | |
CCTGTTCCATTAGGATCAGA+AGG | - | chr2_4:63556809-63556828 | Msa0341700:five_prime_UTR | 45.0% | |
TCCATTAGGATCAGAAGGAG+AGG | - | chr2_4:63556814-63556833 | Msa0341700:five_prime_UTR | 45.0% | |
ACCTCTCCTTCTGATCCTAA+TGG | + | chr2_4:63556818-63556837 | None:intergenic | 45.0% | |
TGCTTGCAGTCGATAACAGT+GGG | + | chr2_4:63557048-63557067 | None:intergenic | 45.0% | |
! | TTTCGCTTGCTAGTTGGGTT+TGG | - | chr2_4:63557092-63557111 | Msa0341700:five_prime_UTR | 45.0% |
! | TTCGCTTGCTAGTTGGGTTT+GGG | - | chr2_4:63557093-63557112 | Msa0341700:five_prime_UTR | 45.0% |
TACCCTGCATACAGCAGTTA+CGG | + | chr2_4:63557130-63557149 | None:intergenic | 45.0% | |
AACTGCTGTATGCAGGGTAT+TGG | - | chr2_4:63557131-63557150 | Msa0341700:five_prime_UTR | 45.0% | |
! | ACTGCTGTATGCAGGGTATT+GGG | - | chr2_4:63557132-63557151 | Msa0341700:five_prime_UTR | 45.0% |
TTGATTGCTACTAGCGGCAC+TGG | - | chr2_4:63553608-63553627 | Msa0341700:three_prime_UTR | 50.0% | |
ACTTAGGTGGCCGTATATCC+TGG | + | chr2_4:63554327-63554346 | None:intergenic | 50.0% | |
ATCCTTTGATCAGTGCCCTG+CGG | - | chr2_4:63554423-63554442 | Msa0341700:five_prime_UTR | 50.0% | |
CTACCTCTATTGTTGCCGCA+GGG | + | chr2_4:63554441-63554460 | None:intergenic | 50.0% | |
AAAGACCACTTGTGTGGACC+AGG | + | chr2_4:63554744-63554763 | None:intergenic | 50.0% | |
TGGTCCACACAAGTGGTCTT+TGG | - | chr2_4:63554743-63554762 | Msa0341700:five_prime_UTR | 50.0% | |
GTGACCAAAGACCACTTGTG+TGG | + | chr2_4:63554750-63554769 | None:intergenic | 50.0% | |
GAGAAACACTTGTGTGGACC+AGG | + | chr2_4:63554888-63554907 | None:intergenic | 50.0% | |
CTTGGGGAGAAACACTTGTG+TGG | + | chr2_4:63554894-63554913 | None:intergenic | 50.0% | |
AAGGCAGTTGCTTGCGCTTA+TGG | + | chr2_4:63555138-63555157 | None:intergenic | 50.0% | |
GCTTCCACAGGTGATATTCC+CGG | - | chr2_4:63556359-63556378 | Msa0341700:intron | 50.0% | |
AGCTGGAGCTTCAACTGGTA+CGG | - | chr2_4:63556394-63556413 | Msa0341700:intron | 50.0% | |
ACTGGGGACTTTACTGGTAC+TGG | - | chr2_4:63556527-63556546 | Msa0341700:intron | 50.0% | |
ACTGGAGTAGCTATTGGCAC+CGG | - | chr2_4:63556551-63556570 | Msa0341700:intron | 50.0% | |
!! | ATTGGCACCGGTGAAACTAC+TGG | - | chr2_4:63556563-63556582 | Msa0341700:intron | 50.0% |
ACCGGTGAAACTACTGGAAC+TGG | - | chr2_4:63556569-63556588 | Msa0341700:intron | 50.0% | |
GCCAGTTCCAGTAGTTTCAC+CGG | + | chr2_4:63556573-63556592 | None:intergenic | 50.0% | |
CACATCACATGCTCCTTCTC+CGG | + | chr2_4:63556687-63556706 | None:intergenic | 50.0% | |
! | AGGAGCATGTGATGTGGCAT+TGG | - | chr2_4:63556691-63556710 | Msa0341700:intron | 50.0% |
! | AGCATGTGATGTGGCATTGG+AGG | - | chr2_4:63556694-63556713 | Msa0341700:intron | 50.0% |
CAATCCAGTGGGCAAGCTAA+GGG | + | chr2_4:63556893-63556912 | None:intergenic | 50.0% | |
TCAATCCAGTGGGCAAGCTA+AGG | + | chr2_4:63556894-63556913 | None:intergenic | 50.0% | |
CAAAGTAGTCGAGGATGACG+TGG | - | chr2_4:63556969-63556988 | Msa0341700:five_prime_UTR | 50.0% | |
TGCAGTCGATAACAGTGGGA+TGG | + | chr2_4:63557044-63557063 | None:intergenic | 50.0% | |
GTGCTTGCAGTCGATAACAG+TGG | + | chr2_4:63557049-63557068 | None:intergenic | 50.0% | |
TTGCTAGTTGGGTTTGGGTG+AGG | - | chr2_4:63557098-63557117 | Msa0341700:five_prime_UTR | 50.0% | |
TTGCCGTAACTGCTGTATGC+AGG | - | chr2_4:63557124-63557143 | Msa0341700:five_prime_UTR | 50.0% | |
TGCCGTAACTGCTGTATGCA+GGG | - | chr2_4:63557125-63557144 | Msa0341700:five_prime_UTR | 50.0% | |
TTGCCACATAGGCAAGGGCA+AGG | - | chr2_4:63553651-63553670 | Msa0341700:three_prime_UTR | 55.0% | |
TGCCACATAGGCAAGGGCAA+GGG | - | chr2_4:63553652-63553671 | Msa0341700:three_prime_UTR | 55.0% | |
ATAGGCAAGGGCAAGGGCAA+GGG | - | chr2_4:63553658-63553677 | Msa0341700:three_prime_UTR | 55.0% | |
CCTACCTCTATTGTTGCCGC+AGG | + | chr2_4:63554442-63554461 | None:intergenic | 55.0% | |
CCTGCGGCAACAATAGAGGT+AGG | - | chr2_4:63554439-63554458 | Msa0341700:five_prime_UTR | 55.0% | |
TCTCCTTCTTGGGAGGGTCA+GGG | + | chr2_4:63554707-63554726 | None:intergenic | 55.0% | |
TTCTCCTTCTTGGGAGGGTC+AGG | + | chr2_4:63554708-63554727 | None:intergenic | 55.0% | |
TTGTGTGGTACAGGAGGAGC+AGG | - | chr2_4:63555010-63555029 | Msa0341700:five_prime_UTR | 55.0% | |
TGGTACAGGAGGAGCAGGAT+TGG | - | chr2_4:63555015-63555034 | Msa0341700:five_prime_UTR | 55.0% | |
GCAGTTGCTTGCGCTTATGG+TGG | + | chr2_4:63555135-63555154 | None:intergenic | 55.0% | |
AGCGCAAGCAACTGCCTTTC+TGG | - | chr2_4:63555140-63555159 | Msa0341700:five_prime_UTR | 55.0% | |
GCATTGGGGAGCCCATCATT+CGG | - | chr2_4:63555807-63555826 | Msa0341700:intron | 55.0% | |
TGCAGACGGTCCCAATTCAG+GGG | + | chr2_4:63556300-63556319 | None:intergenic | 55.0% | |
CTGCAGACGGTCCCAATTCA+GGG | + | chr2_4:63556301-63556320 | None:intergenic | 55.0% | |
GCTGGAGCTTCAACTGGTAC+GGG | - | chr2_4:63556395-63556414 | Msa0341700:intron | 55.0% | |
GCTTCAACTGGTACGGGTAC+TGG | - | chr2_4:63556401-63556420 | Msa0341700:intron | 55.0% | |
TACTGGAGCTGGAGCTGGTA+CGG | - | chr2_4:63556418-63556437 | Msa0341700:intron | 55.0% | |
ATTGGAGCTGGAGCTGTAGC+TGG | - | chr2_4:63556473-63556492 | Msa0341700:intron | 55.0% | |
AGCTGGAGCTGTAGCTGGTA+TGG | - | chr2_4:63556478-63556497 | Msa0341700:intron | 55.0% | |
GCTGTAGCTGGTATGGCTAC+TGG | - | chr2_4:63556485-63556504 | Msa0341700:intron | 55.0% | |
ACCAGTAAAGTCCCCAGTGC+CGG | + | chr2_4:63556525-63556544 | None:intergenic | 55.0% | |
ACTGGAACTGGCGATACCAC+AGG | - | chr2_4:63556581-63556600 | Msa0341700:intron | 55.0% | |
!! | ACTGGCACTGGTGATACCAC+TGG | - | chr2_4:63556629-63556648 | Msa0341700:intron | 55.0% |
ACTGGTGATACCACTGGCAC+AGG | - | chr2_4:63556635-63556654 | Msa0341700:intron | 55.0% | |
TATTCCAGCTCCTGTGCCAG+TGG | + | chr2_4:63556648-63556667 | None:intergenic | 55.0% | |
GAAACAACAGGAGCCGGAGA+AGG | - | chr2_4:63556671-63556690 | Msa0341700:intron | 55.0% | |
! | CGGAGAAGGAGCATGTGATG+TGG | - | chr2_4:63556685-63556704 | Msa0341700:intron | 55.0% |
GAGGAAGCAAGCAAAGACGG+TGG | - | chr2_4:63556713-63556732 | Msa0341700:intron | 55.0% | |
CAGTGGGCAAGCTAAGGGAT+CGG | + | chr2_4:63556888-63556907 | None:intergenic | 55.0% | |
AGTGGGATGGCACCTATCTC+AGG | + | chr2_4:63557031-63557050 | None:intergenic | 55.0% | |
TGCCCTTGCCCTTGCCTATG+TGG | + | chr2_4:63553657-63553676 | None:intergenic | 60.0% | |
CATAGGCAAGGGCAAGGGCA+AGG | - | chr2_4:63553657-63553676 | Msa0341700:three_prime_UTR | 60.0% | |
GCAAGGCATAGACGCCTGAC+AGG | + | chr2_4:63553804-63553823 | None:intergenic | 60.0% | |
!! | TGCCGCAGGGCACTGATCAA+AGG | + | chr2_4:63554428-63554447 | None:intergenic | 60.0% |
GTGCCCTGCGGCAACAATAG+AGG | - | chr2_4:63554435-63554454 | Msa0341700:five_prime_UTR | 60.0% | |
!! | AGGGCACCGCACGATGAAAG+TGG | + | chr2_4:63554494-63554513 | None:intergenic | 60.0% |
GTGGTCCTGGTCCACACAAG+TGG | - | chr2_4:63554736-63554755 | Msa0341700:five_prime_UTR | 60.0% | |
TGGGCTCCCCAATGCTTGTG+AGG | + | chr2_4:63555802-63555821 | None:intergenic | 60.0% | |
GCTGCAGACGGTCCCAATTC+AGG | + | chr2_4:63556302-63556321 | None:intergenic | 60.0% | |
GGACCGTCTGCAGCTTCATC+TGG | - | chr2_4:63556308-63556327 | Msa0341700:intron | 60.0% | |
AGGGCCGGGAATATCACCTG+TGG | + | chr2_4:63556366-63556385 | None:intergenic | 60.0% | |
ACAGGTGATATTCCCGGCCC+TGG | - | chr2_4:63556365-63556384 | Msa0341700:intron | 60.0% | |
AAGCTCCAGCTCCAGCTCCA+GGG | + | chr2_4:63556385-63556404 | None:intergenic | 60.0% | |
GCTGGAGCTGGAGCTTCAAC+TGG | - | chr2_4:63556389-63556408 | Msa0341700:intron | 60.0% | |
!! | ACTGGTACGGGTACTGGAGC+TGG | - | chr2_4:63556407-63556426 | Msa0341700:intron | 60.0% |
AGCTGGAGCTGCAGCAGGTA+CGG | - | chr2_4:63556448-63556467 | Msa0341700:intron | 60.0% | |
GCTGCAGCAGGTACGGCTAT+TGG | - | chr2_4:63556455-63556474 | Msa0341700:intron | 60.0% | |
GCAGGTACGGCTATTGGAGC+TGG | - | chr2_4:63556461-63556480 | Msa0341700:intron | 60.0% | |
GCTGGTATGGCTACTGGAGC+TGG | - | chr2_4:63556491-63556510 | Msa0341700:intron | 60.0% | |
ACTGGAGCTGGAGCTGCTAC+CGG | - | chr2_4:63556503-63556522 | Msa0341700:intron | 60.0% | |
! | ACCGGCACTGGGGACTTTAC+TGG | - | chr2_4:63556521-63556540 | Msa0341700:intron | 60.0% |
ACTGGCGATACCACAGGCAC+TGG | - | chr2_4:63556587-63556606 | Msa0341700:intron | 60.0% | |
!! | ACTGGTGCTGCAACTGGCAC+TGG | - | chr2_4:63556617-63556636 | Msa0341700:intron | 60.0% |
GATACCACTGGCACAGGAGC+TGG | - | chr2_4:63556641-63556660 | Msa0341700:intron | 60.0% | |
GGGCAAGCTAAGGGATCGGA+GGG | + | chr2_4:63556884-63556903 | None:intergenic | 60.0% | |
TGGGCAAGCTAAGGGATCGG+AGG | + | chr2_4:63556885-63556904 | None:intergenic | 60.0% | |
!! | CGATCCCTTAGCTTGCCCAC+TGG | - | chr2_4:63556886-63556905 | Msa0341700:five_prime_UTR | 60.0% |
!! | TGCTACTAGCGGCACTGGCC+TGG | - | chr2_4:63553613-63553632 | Msa0341700:three_prime_UTR | 65.0% |
CAAGGGCAAGGGCAAGGGCA+GGG | - | chr2_4:63553663-63553682 | Msa0341700:three_prime_UTR | 65.0% | |
AAGGGCAAGGGCAAGGGCAG+GGG | - | chr2_4:63553664-63553683 | Msa0341700:three_prime_UTR | 65.0% | |
GGTCCCTGACCCTCCCAAGA+AGG | - | chr2_4:63554701-63554720 | Msa0341700:five_prime_UTR | 65.0% | |
ACTGGTGCGGGAGCTTCCAC+AGG | - | chr2_4:63556347-63556366 | Msa0341700:intron | 65.0% | |
GATATTCCCGGCCCTGGAGC+TGG | - | chr2_4:63556371-63556390 | Msa0341700:intron | 65.0% | |
GAAGCTCCAGCTCCAGCTCC+AGG | + | chr2_4:63556386-63556405 | None:intergenic | 65.0% | |
!! | ACGGGTACTGGAGCTGGAGC+TGG | - | chr2_4:63556413-63556432 | Msa0341700:intron | 65.0% |
GCTGGAGCTGGTACGGCAAC+TGG | - | chr2_4:63556425-63556444 | Msa0341700:intron | 65.0% | |
GCTGGTACGGCAACTGGAGC+TGG | - | chr2_4:63556431-63556450 | Msa0341700:intron | 65.0% | |
ACTGGAGCTGGAGCTGCAGC+AGG | - | chr2_4:63556443-63556462 | Msa0341700:intron | 65.0% | |
CTGGAGCTGCTACCGGCACT+GGG | - | chr2_4:63556510-63556529 | Msa0341700:intron | 65.0% | |
TGGAGCTGCTACCGGCACTG+GGG | - | chr2_4:63556511-63556530 | Msa0341700:intron | 65.0% | |
GCAAGGGCAAGGGCAAGGGC+AGG | - | chr2_4:63553662-63553681 | Msa0341700:three_prime_UTR | 70.0% | |
CAAGGGCAAGGGCAGGGGCA+TGG | - | chr2_4:63553669-63553688 | Msa0341700:three_prime_UTR | 70.0% | |
TCCAGCTCCAGCTCCAGGGC+CGG | + | chr2_4:63556381-63556400 | None:intergenic | 70.0% | |
GCTGGAGCTGCTACCGGCAC+TGG | - | chr2_4:63556509-63556528 | Msa0341700:intron | 70.0% | |
CCAGCTCCAGCTCCAGGGCC+GGG | + | chr2_4:63556380-63556399 | None:intergenic | 75.0% | |
! | CCCGGCCCTGGAGCTGGAGC+TGG | - | chr2_4:63556377-63556396 | Msa0341700:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 63553372 | 63557239 | 63553372 | ID=Msa0341700;Name=Msa0341700 |
chr2_4 | mRNA | 63553372 | 63557239 | 63553372 | ID=Msa0341700-mRNA-1;Parent=Msa0341700;Name=Msa0341700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=1958|1|1|1|1|1|2|326|138 |
chr2_4 | exon | 63553372 | 63555588 | 63553372 | ID=Msa0341700-mRNA-1:exon:20300;Parent=Msa0341700-mRNA-1 |
chr2_4 | exon | 63556756 | 63557239 | 63556756 | ID=Msa0341700-mRNA-1:exon:20299;Parent=Msa0341700-mRNA-1 |
chr2_4 | five_prime_UTR | 63556756 | 63557239 | 63556756 | ID=Msa0341700-mRNA-1:five_prime_utr;Parent=Msa0341700-mRNA-1 |
chr2_4 | five_prime_UTR | 63554115 | 63555588 | 63554115 | ID=Msa0341700-mRNA-1:five_prime_utr;Parent=Msa0341700-mRNA-1 |
chr2_4 | CDS | 63553698 | 63554114 | 63553698 | ID=Msa0341700-mRNA-1:cds;Parent=Msa0341700-mRNA-1 |
chr2_4 | three_prime_UTR | 63553372 | 63553697 | 63553372 | ID=Msa0341700-mRNA-1:three_prime_utr;Parent=Msa0341700-mRNA-1 |
Gene Sequence |
Protein sequence |