AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0093840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093840 MtrunA17_Chr2g0334071 100.000 57 0 0 82 138 1 57 6.99e-36 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 201 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACAAATTTATGCATATT+TGG 0.139534 1_2:+76881135 Msa0093840:five_prime_UTR
TACTCTCACAAATTATATTT+TGG 0.159975 1_2:-76883244 None:intergenic
AGCGCAAGCAACTGCCTTTC+TGG 0.190152 1_2:+76882512 Msa0093840:five_prime_UTR
AAATAGAACAATGACATTTC+TGG 0.223530 1_2:+76883507 Msa0093840:five_prime_UTR
CTCCTATATATGTGCTATTA+TGG 0.225343 1_2:+76883577 Msa0093840:five_prime_UTR
TAATACTTTACAAATAAAAT+TGG 0.235179 1_2:+76882617 Msa0093840:five_prime_UTR
ATTGGAACTTAACCCGAATT+AGG 0.246617 1_2:-76882975 None:intergenic
TAGTTTGATTTCCCATGTTC+TGG 0.267157 1_2:+76884347 Msa0093840:three_prime_UTR
GCTGCAGACGGTCCCAATTC+AGG 0.274322 1_2:-76883713 None:intergenic
TAATGGAACAGGTGCCAATT+TGG 0.279667 1_2:-76884212 None:intergenic
TTATGTGAACCTTCCTAATT+CGG 0.280390 1_2:+76882962 Msa0093840:five_prime_UTR
CACAACAGCTTTAACCAAAT+TGG 0.282805 1_2:+76884198 Msa0093840:CDS
AAGGCAGTTGCTTGCGCTTA+TGG 0.292633 1_2:-76882507 None:intergenic
AGACTTTATCACCCCTGAAT+TGG 0.303446 1_2:+76883700 Msa0093840:five_prime_UTR
AGTTTATTTCGCTTGCTAGT+TGG 0.307097 1_2:+76884500 Msa0093840:three_prime_UTR
TTTCGCTTGCTAGTTGGGTT+TGG 0.308227 1_2:+76884506 Msa0093840:three_prime_UTR
TTCGCTTGCTAGTTGGGTTT+GGG 0.308772 1_2:+76884507 Msa0093840:three_prime_UTR
GCAGTAACTATTCCTCAAAA+TGG 0.310904 1_2:-76882813 None:intergenic
ACCTCTCCTTCTGATCCTAA+TGG 0.312323 1_2:-76884229 None:intergenic
AGCATTGCAGTGCTAGTTCT+TGG 0.316398 1_2:+76882676 Msa0093840:five_prime_UTR
GCTGGAGCTGCTACCGGCAC+TGG 0.325350 1_2:+76883923 Msa0093840:CDS
GGACCGTCTGCAGCTTCATC+TGG 0.330349 1_2:+76883722 Msa0093840:five_prime_UTR
ACCTTGTGTTGTGTGTTAAA+AGG 0.330666 1_2:+76882894 Msa0093840:five_prime_UTR
CAATCTATGTGCTGCTGTCT+AGG 0.336885 1_2:-76883637 None:intergenic
GTTTATTTCGCTTGCTAGTT+GGG 0.346701 1_2:+76884501 Msa0093840:three_prime_UTR
AGATACTTCACCAAGACTTA+TGG 0.347208 1_2:-76883127 None:intergenic
AAGGGCAAGGGCAAGGGCAG+GGG 0.349176 1_2:+76881036 Msa0093840:five_prime_UTR
GCAGCTTCATCTGGATTTGT+AGG 0.349857 1_2:+76883731 Msa0093840:five_prime_UTR
GAGTTAGCCTTGTAAGTTGC+AGG 0.351307 1_2:+76883432 Msa0093840:five_prime_UTR
TATGTGAACCTTCCTAATTC+GGG 0.363085 1_2:+76882963 Msa0093840:five_prime_UTR
GCTGGAGCTGGTACGGCAAC+TGG 0.363344 1_2:+76883839 Msa0093840:five_prime_UTR
CAAGGGCAAGGGCAGGGGCA+TGG 0.366059 1_2:+76881041 Msa0093840:five_prime_UTR
CCCGGCCCTGGAGCTGGAGC+TGG 0.367306 1_2:+76883791 Msa0093840:five_prime_UTR
CACATAAATCAAGAGATATA+AGG 0.370389 1_2:-76882946 None:intergenic
GCTGCAGCAGGTACGGCTAT+TGG 0.372360 1_2:+76883869 Msa0093840:five_prime_UTR
TCAAAACAGGTTATAGATAA+GGG 0.373172 1_2:+76884586 Msa0093840:three_prime_UTR
TAAAGTATTAAATTTGTGTT+TGG 0.378924 1_2:-76882604 None:intergenic
ACCGGCACTGGGGACTTTAC+TGG 0.380008 1_2:+76883935 Msa0093840:CDS
GACTTTATCACCCCTGAATT+GGG 0.384717 1_2:+76883701 Msa0093840:five_prime_UTR
ATTGCGAGGAAGCTTTAGTA+TGG 0.392622 1_2:-76882561 None:intergenic
GCAAGGGCAAGGGCAAGGGC+AGG 0.392948 1_2:+76881034 Msa0093840:five_prime_UTR
ACAGGCACTGGAACTATAAC+TGG 0.393725 1_2:+76884013 Msa0093840:CDS
AAATTGGCACCTGTTCCATT+AGG 0.394123 1_2:+76884214 Msa0093840:CDS
GATATTCCCGGCCCTGGAGC+TGG 0.394266 1_2:+76883785 Msa0093840:five_prime_UTR
ATTAATCATATAGGATATAT+AGG 0.394860 1_2:+76883071 Msa0093840:five_prime_UTR
CTGGAGCTGCTACCGGCACT+GGG 0.395926 1_2:+76883924 Msa0093840:CDS
ATCAGCAAAGAAGTTATTCC+AGG 0.397931 1_2:+76883373 Msa0093840:five_prime_UTR
GAAGCTCCAGCTCCAGCTCC+AGG 0.398532 1_2:-76883797 None:intergenic
TGCTACTAGCGGCACTGGCC+TGG 0.402795 1_2:+76880985 Msa0093840:five_prime_UTR
GTACATGTGAGAAAGATAAA+AGG 0.406565 1_2:-76880898 None:intergenic
TATATTAACAAAATCATATG+AGG 0.406749 1_2:+76882717 Msa0093840:five_prime_UTR
GACTTTACTGGTACTGGAAC+TGG 0.406809 1_2:+76883947 Msa0093840:CDS
TGTGAAAATCACTTTCTGTA+AGG 0.411240 1_2:+76883007 Msa0093840:five_prime_UTR
ACAGCAAAGCAGGTTTCATA+TGG 0.412230 1_2:+76882846 Msa0093840:five_prime_UTR
TGCCCTTGCCCTTGCCTATG+TGG 0.413272 1_2:-76881026 None:intergenic
TACTCAAACCTCACAAGCAT+TGG 0.414367 1_2:+76883163 Msa0093840:five_prime_UTR
TCCAGCTCCAGCTCCAGGGC+CGG 0.416867 1_2:-76883792 None:intergenic
ACCGGTGAAACTACTGGAAC+TGG 0.417489 1_2:+76883983 Msa0093840:CDS
ACTATAACTGGTGCTGCAAC+TGG 0.418376 1_2:+76884025 Msa0093840:CDS
GCTTCAACTGGTACGGGTAC+TGG 0.421812 1_2:+76883815 Msa0093840:five_prime_UTR
GCTGGTACGGCAACTGGAGC+TGG 0.423422 1_2:+76883845 Msa0093840:five_prime_UTR
GTCAAAACAGGTTATAGATA+AGG 0.423730 1_2:+76884585 Msa0093840:three_prime_UTR
TGAGGTTTATCTCTTACAAC+TGG 0.428414 1_2:+76882735 Msa0093840:five_prime_UTR
ACTCAAACCTCACAAGCATT+GGG 0.429574 1_2:+76883164 Msa0093840:five_prime_UTR
AAAAGTAAGGAAGAGAGTTA+AGG 0.430636 1_2:+76883664 Msa0093840:five_prime_UTR
CCAGCTCCAGCTCCAGGGCC+GGG 0.435270 1_2:-76883791 None:intergenic
CGAGGAAGCTTTAGTATGGT+TGG 0.440416 1_2:-76882557 None:intergenic
CCTTCTGATCCTAATGGAAC+AGG 0.442019 1_2:-76884223 None:intergenic
CATAGGCAAGGGCAAGGGCA+AGG 0.444965 1_2:+76881029 Msa0093840:five_prime_UTR
AACTGCTGTATGCAGGGTAT+TGG 0.447323 1_2:+76884545 Msa0093840:three_prime_UTR
AAGAACTAGCACTGCAATGC+TGG 0.448182 1_2:-76882674 None:intergenic
GCTGGTATGGCTACTGGAGC+TGG 0.451632 1_2:+76883905 Msa0093840:exon
CAAGGGCAAGGGCAAGGGCA+GGG 0.452394 1_2:+76881035 Msa0093840:five_prime_UTR
AGTGGGATGGCACCTATCTC+AGG 0.453316 1_2:-76884442 None:intergenic
ACTGGAGCTGGAGCTGCAGC+AGG 0.455752 1_2:+76883857 Msa0093840:five_prime_UTR
AGCTTTAGTATGGTTGGAGT+TGG 0.457080 1_2:-76882551 None:intergenic
GCTGTAGCTGGTATGGCTAC+TGG 0.462829 1_2:+76883899 Msa0093840:exon
ACTGCTGTATGCAGGGTATT+GGG 0.463006 1_2:+76884546 Msa0093840:three_prime_UTR
ACTGGGGACTTTACTGGTAC+TGG 0.463772 1_2:+76883941 Msa0093840:CDS
TTGCTGTAACTGCTGTATGC+AGG 0.466083 1_2:+76884538 Msa0093840:three_prime_UTR
GCTTCCACAGGTGATATTCC+CGG 0.467725 1_2:+76883773 Msa0093840:five_prime_UTR
GATACCACTGGCACAGGAGC+TGG 0.473271 1_2:+76884055 Msa0093840:CDS
TACCATAATAGCACATATAT+AGG 0.473334 1_2:-76883579 None:intergenic
ATTGGCACCGGTGAAACTAC+TGG 0.476508 1_2:+76883977 Msa0093840:CDS
GGCATGGAAAGAACAAGAAA+TGG 0.478139 1_2:+76881057 Msa0093840:five_prime_UTR
ATTGGAGCTGGAGCTGTAGC+TGG 0.478768 1_2:+76883887 Msa0093840:five_prime_UTR
GCTGGAGCTGGAGCTTCAAC+TGG 0.479614 1_2:+76883803 Msa0093840:five_prime_UTR
CTGCAGACGGTCCCAATTCA+GGG 0.482412 1_2:-76883712 None:intergenic
TGTTGTGTGTTAAAAGGAGC+TGG 0.483782 1_2:+76882900 Msa0093840:five_prime_UTR
ACTGGTACGGGTACTGGAGC+TGG 0.485392 1_2:+76883821 Msa0093840:five_prime_UTR
ACAGGTGATATTCCCGGCCC+TGG 0.487404 1_2:+76883779 Msa0093840:five_prime_UTR
GCAGGTACGGCTATTGGAGC+TGG 0.489794 1_2:+76883875 Msa0093840:five_prime_UTR
TCAATCCAGTGGGCAAGCTA+AGG 0.491495 1_2:-76884305 None:intergenic
AAATGATAAAATTTGATCAC+AGG 0.492614 1_2:-76883325 None:intergenic
AGCTGGAGCTTCAACTGGTA+CGG 0.493079 1_2:+76883808 Msa0093840:five_prime_UTR
TTGATTGCTACTAGCGGCAC+TGG 0.496670 1_2:+76880980 Msa0093840:five_prime_UTR
ACTGGAACTGGAGTAGCTAT+TGG 0.498938 1_2:+76883959 Msa0093840:CDS
TTGGTAGCTATTAATCATAT+AGG 0.499472 1_2:+76883062 Msa0093840:five_prime_UTR
AGCTGGAGCTGCAGCAGGTA+CGG 0.502806 1_2:+76883862 Msa0093840:five_prime_UTR
AGAGAATAGTGTTGCCACAT+AGG 0.505315 1_2:+76881012 Msa0093840:five_prime_UTR
CACATCACATGCTCCTTCTC+CGG 0.505499 1_2:-76884098 None:intergenic
TTGCTAGTTGGGTTTGGGTG+AGG 0.506434 1_2:+76884512 Msa0093840:three_prime_UTR
GCTGGAATACGTGAAACAAC+AGG 0.508392 1_2:+76884073 Msa0093840:CDS
CGATCCCTTAGCTTGCCCAC+TGG 0.508993 1_2:+76884300 Msa0093840:CDS
TTGTGTGGTACAGGAGGAGC+AGG 0.509693 1_2:+76882382 Msa0093840:intron
AGCTGGAGCTGTAGCTGGTA+TGG 0.509977 1_2:+76883892 Msa0093840:exon
ACCTTCTTGATCACATCCAT+TGG 0.511996 1_2:+76884415 Msa0093840:three_prime_UTR
AGGAGCATGTGATGTGGCAT+TGG 0.512016 1_2:+76884105 Msa0093840:CDS
AGCACATTGTTTCAATCCAG+TGG 0.514658 1_2:-76884316 None:intergenic
CAATTTGGTTAAAGCTGTTG+TGG 0.515039 1_2:-76884197 None:intergenic
CTAACCACTTGACTGTATCC+TGG 0.515613 1_2:-76883391 None:intergenic
TCTTTAATTAACAGCAAAGC+AGG 0.520053 1_2:+76882836 Msa0093840:five_prime_UTR
TACTGGAGCTGGAGCTGGTA+CGG 0.523812 1_2:+76883832 Msa0093840:five_prime_UTR
GATACAATATGTATGAACTC+AGG 0.525048 1_2:+76883454 Msa0093840:five_prime_UTR
ACTGGTGCGGGAGCTTCCAC+AGG 0.527911 1_2:+76883761 Msa0093840:five_prime_UTR
ACTGGCGATACCACAGGCAC+TGG 0.530919 1_2:+76884001 Msa0093840:CDS
TGCTGTAACTGCTGTATGCA+GGG 0.532247 1_2:+76884539 Msa0093840:three_prime_UTR
ACTGGTGCTGCAACTGGCAC+TGG 0.532604 1_2:+76884031 Msa0093840:CDS
GGATTTGTAGGAGATAATAC+TGG 0.532991 1_2:+76883743 Msa0093840:five_prime_UTR
GGACATCCATCCATAAGTCT+TGG 0.533357 1_2:+76883117 Msa0093840:five_prime_UTR
ACCAGTAAAGTCCCCAGTGC+CGG 0.533495 1_2:-76883936 None:intergenic
GCAAGGCATAGACGCCTGAC+AGG 0.537537 1_2:-76881173 None:intergenic
ATAGGCAAGGGCAAGGGCAA+GGG 0.539153 1_2:+76881030 Msa0093840:five_prime_UTR
GCCAGTTCCAGTAGTTTCAC+CGG 0.543123 1_2:-76883984 None:intergenic
ACTGGAGCTGGAGCTGCTAC+CGG 0.543784 1_2:+76883917 Msa0093840:CDS
GAAACAACAGGAGCCGGAGA+AGG 0.548703 1_2:+76884085 Msa0093840:CDS
CAATCCAGTGGGCAAGCTAA+GGG 0.551114 1_2:-76884304 None:intergenic
TCATATAGGATATATAGGAT+TGG 0.552029 1_2:+76883076 Msa0093840:five_prime_UTR
ATATAGAAACAGAAAGAGAA+AGG 0.554596 1_2:-76880854 None:intergenic
ATTGTATCCTGCAACTTACA+AGG 0.559884 1_2:-76883439 None:intergenic
CAAGATGATGTACAAACTTG+TGG 0.560224 1_2:+76882418 Msa0093840:five_prime_UTR
TGCACCACTGAAATATTGTA+TGG 0.560827 1_2:+76884169 Msa0093840:CDS
ATTTGATCACAGGTGAAACA+AGG 0.562127 1_2:-76883315 None:intergenic
AGTAGTAGTGGAATTGAGAG+AGG 0.562231 1_2:+76880790 Msa0093840:five_prime_UTR
AAGCTCCAGCTCCAGCTCCA+GGG 0.563448 1_2:-76883796 None:intergenic
TTGCCACATAGGCAAGGGCA+AGG 0.566012 1_2:+76881023 Msa0093840:five_prime_UTR
GAACTTAACCCGAATTAGGA+AGG 0.566291 1_2:-76882971 None:intergenic
GCATTGGGGAGCCCATCATT+CGG 0.566711 1_2:+76883179 Msa0093840:five_prime_UTR
AGCATGTGATGTGGCATTGG+AGG 0.566773 1_2:+76884108 Msa0093840:CDS
TGAAGATGTACAAGTGATGT+GGG 0.568556 1_2:+76882444 Msa0093840:five_prime_UTR
GCTGGAGCTTCAACTGGTAC+GGG 0.569244 1_2:+76883809 Msa0093840:five_prime_UTR
CCTGTTCCATTAGGATCAGA+AGG 0.569303 1_2:+76884223 Msa0093840:CDS
CAACACTATTCTCTTTGACC+AGG 0.569671 1_2:-76881003 None:intergenic
GTAGGAGATAATACTGGTGC+GGG 0.573004 1_2:+76883749 Msa0093840:five_prime_UTR
GAAGGACTCTATAGTAGTAG+TGG 0.575338 1_2:+76880778 Msa0093840:five_prime_UTR
ATACGTGAAACAACAGGAGC+CGG 0.575957 1_2:+76884079 Msa0093840:CDS
TGCTTGCAGTCGATAACAGT+GGG 0.577246 1_2:-76884459 None:intergenic
AGACAGCAGCACATAGATTG+AGG 0.579626 1_2:+76883640 Msa0093840:five_prime_UTR
ACTGGTGATACCACTGGCAC+AGG 0.580287 1_2:+76884049 Msa0093840:CDS
CAAAGTAGTCGAGGATGACG+TGG 0.581524 1_2:+76884383 Msa0093840:three_prime_UTR
ACGGGTACTGGAGCTGGAGC+TGG 0.582105 1_2:+76883827 Msa0093840:five_prime_UTR
TTTGAACATCAAAGTAGTCG+AGG 0.585179 1_2:+76884374 Msa0093840:three_prime_UTR
TCATGAATAGATATTATACA+TGG 0.587754 1_2:+76883613 Msa0093840:five_prime_UTR
TGTGATTAAAAGTAAAGTGA+AGG 0.587990 1_2:+76883291 Msa0093840:five_prime_UTR
TGTAGGAGATAATACTGGTG+CGG 0.592825 1_2:+76883748 Msa0093840:five_prime_UTR
GCACATTGTTTCAATCCAGT+GGG 0.593204 1_2:-76884315 None:intergenic
CATACAAAGACTCTCCAGAA+AGG 0.593758 1_2:-76882526 None:intergenic
ATACAATATGTATGAACTCA+GGG 0.595577 1_2:+76883455 Msa0093840:five_prime_UTR
TGGGCTCCCCAATGCTTGTG+AGG 0.596428 1_2:-76883171 None:intergenic
TTGGAGGAAGCAAGCAAAGA+CGG 0.598325 1_2:+76884124 Msa0093840:CDS
ACCAATGGATGTGATCAAGA+AGG 0.598927 1_2:-76884416 None:intergenic
AGTTATAGTTCCAGTGCCTG+TGG 0.602983 1_2:-76884011 None:intergenic
ATAGTGTTGCCACATAGGCA+AGG 0.603679 1_2:+76881017 Msa0093840:five_prime_UTR
ACTGGAACTGGCGATACCAC+AGG 0.604063 1_2:+76883995 Msa0093840:CDS
ACTGGATTGAAACAATGTGC+TGG 0.606473 1_2:+76884318 Msa0093840:exon
ACTGGCACTGGTGATACCAC+TGG 0.606553 1_2:+76884043 Msa0093840:CDS
ATGAAGATGTACAAGTGATG+TGG 0.606676 1_2:+76882443 Msa0093840:five_prime_UTR
TGGTACAGGAGGAGCAGGAT+TGG 0.606763 1_2:+76882387 Msa0093840:intron
CAGTGGGCAAGCTAAGGGAT+CGG 0.607003 1_2:-76884299 None:intergenic
TATTCCAGCTCCTGTGCCAG+TGG 0.610040 1_2:-76884059 None:intergenic
AAATAAATAAATAAATGTGA+AGG 0.610708 1_2:+76880760 Msa0093840:five_prime_UTR
TGCAGTCGATAACAGTGGGA+TGG 0.613260 1_2:-76884455 None:intergenic
TAGTGTTGCCACATAGGCAA+GGG 0.614827 1_2:+76881018 Msa0093840:five_prime_UTR
AAAGTCACAGATCTTAGCAC+AGG 0.615864 1_2:-76884265 None:intergenic
TTTCTGTAAGGTATGAGTGA+TGG 0.621732 1_2:+76883019 Msa0093840:five_prime_UTR
ACCTATCTCAGGAAAACCAA+TGG 0.626354 1_2:-76884431 None:intergenic
TGGATGCAGAAAATTAGCAA+TGG 0.628377 1_2:+76883096 Msa0093840:five_prime_UTR
ACTGGAGTAGCTATTGGCAC+CGG 0.628623 1_2:+76883965 Msa0093840:CDS
ACTTCACCAAGACTTATGGA+TGG 0.629003 1_2:-76883123 None:intergenic
CGGAGAAGGAGCATGTGATG+TGG 0.635216 1_2:+76884099 Msa0093840:CDS
GCAGTTGCTTGCGCTTATGG+TGG 0.635788 1_2:-76882504 None:intergenic
TGGGCAAGCTAAGGGATCGG+AGG 0.637132 1_2:-76884296 None:intergenic
ATTGATTTGATTGCTACTAG+CGG 0.638632 1_2:+76880974 Msa0093840:five_prime_UTR
TCCATTAGGATCAGAAGGAG+AGG 0.640280 1_2:+76884228 Msa0093840:CDS
GGGCAAGCTAAGGGATCGGA+GGG 0.640825 1_2:-76884295 None:intergenic
AAGACAGTAGTAGTATCATG+TGG 0.645963 1_2:+76881095 Msa0093840:five_prime_UTR
TTTGATCACAGGTGAAACAA+GGG 0.648496 1_2:-76883314 None:intergenic
CTCAAACCTCACAAGCATTG+GGG 0.654772 1_2:+76883165 Msa0093840:five_prime_UTR
TGCAGACGGTCCCAATTCAG+GGG 0.663383 1_2:-76883711 None:intergenic
TATTCCAGGATACAGTCAAG+TGG 0.666643 1_2:+76883387 Msa0093840:five_prime_UTR
AGTGTGATTTGAAGATTGCG+AGG 0.667949 1_2:-76882575 None:intergenic
ACAACCATACAATATTTCAG+TGG 0.668094 1_2:-76884173 None:intergenic
TGATACGGGTAGATAGAGCA+AGG 0.670563 1_2:-76881190 None:intergenic
TGCCACATAGGCAAGGGCAA+GGG 0.671240 1_2:+76881024 Msa0093840:five_prime_UTR
AATCCAGATGAAGCTGCAGA+CGG 0.674003 1_2:-76883725 None:intergenic
GTGCTTGCAGTCGATAACAG+TGG 0.684221 1_2:-76884460 None:intergenic
AGGGCCGGGAATATCACCTG+TGG 0.684521 1_2:-76883777 None:intergenic
ACAGTAGTAGTATCATGTGG+AGG 0.690266 1_2:+76881098 Msa0093840:five_prime_UTR
TGGAGCTGCTACCGGCACTG+GGG 0.700984 1_2:+76883925 Msa0093840:CDS
GTGAGAAAGATAAAAGGACA+AGG 0.702650 1_2:-76880892 None:intergenic
GAGGAAGCAAGCAAAGACGG+TGG 0.751539 1_2:+76884127 Msa0093840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAATAATTTATAA+TGG - chr1_2:76881628-76881647 None:intergenic 0.0%
!! AAATAAATAAATAAATGTGA+AGG + chr1_2:76880760-76880779 Msa0093840:five_prime_UTR 10.0%
!!! CTTCTTAATTTTATTATTTT+TGG + chr1_2:76881403-76881422 Msa0093840:intron 10.0%
!!! TTATTTTATTTTATACCTTT+CGG + chr1_2:76881638-76881657 Msa0093840:intron 10.0%
!! AAATATGTTGTTAATTAAAT+TGG - chr1_2:76881672-76881691 None:intergenic 10.0%
!! ATAGTACAATATTTATTTAA+GGG - chr1_2:76881727-76881746 None:intergenic 10.0%
!! TATAGTACAATATTTATTTA+AGG - chr1_2:76881728-76881747 None:intergenic 10.0%
!! TAATACTTTACAAATAAAAT+TGG + chr1_2:76882617-76882636 Msa0093840:five_prime_UTR 10.0%
!! GTATATAATTATAATTTCCA+TGG - chr1_2:76881291-76881310 None:intergenic 15.0%
!! TAATTAAGTATATAGTTGAA+TGG + chr1_2:76881452-76881471 Msa0093840:intron 15.0%
!! TACATCATATTAATAATTGA+TGG + chr1_2:76882020-76882039 Msa0093840:intron 15.0%
!!! TAAAGTATTAAATTTGTGTT+TGG - chr1_2:76882607-76882626 None:intergenic 15.0%
!! TATATTAACAAAATCATATG+AGG + chr1_2:76882717-76882736 Msa0093840:five_prime_UTR 15.0%
!!! ATTTTCACAAATCTAATAAT+TGG - chr1_2:76882996-76883015 None:intergenic 15.0%
!! ATTAATCATATAGGATATAT+AGG + chr1_2:76883071-76883090 Msa0093840:five_prime_UTR 15.0%
!! ACAACAAATTTATGCATATT+TGG + chr1_2:76881135-76881154 Msa0093840:five_prime_UTR 20.0%
!! ATAATTATAATTTCCATGGA+TGG - chr1_2:76881287-76881306 None:intergenic 20.0%
!! TTATTTAAGGGAAAAAACTT+AGG - chr1_2:76881715-76881734 None:intergenic 20.0%
!! TGTAAGAATTACACAAAAAA+GGG - chr1_2:76882004-76882023 None:intergenic 20.0%
!! ATGTAAGAATTACACAAAAA+AGG - chr1_2:76882005-76882024 None:intergenic 20.0%
!!! TACTCTCACAAATTATATTT+TGG - chr1_2:76883247-76883266 None:intergenic 20.0%
!! AAATGATAAAATTTGATCAC+AGG - chr1_2:76883328-76883347 None:intergenic 20.0%
!! TCATGAATAGATATTATACA+TGG + chr1_2:76883613-76883632 Msa0093840:five_prime_UTR 20.0%
!!! TATTTTTGTTATGTCAAAAC+AGG + chr1_2:76884573-76884592 Msa0093840:three_prime_UTR 20.0%
! ATATAGAAACAGAAAGAGAA+AGG - chr1_2:76880857-76880876 None:intergenic 25.0%
!!! AATAAATAGTACCGTTTTTG+CGG - chr1_2:76881220-76881239 None:intergenic 25.0%
! CGTACAAATTATATATGTTG+CGG - chr1_2:76881376-76881395 None:intergenic 25.0%
! TAAGTATATAGTTGAATGGA+TGG + chr1_2:76881456-76881475 Msa0093840:intron 25.0%
! TTAATATTACATAAGCACAC+AGG + chr1_2:76881559-76881578 Msa0093840:intron 25.0%
! TACAAAATACATGATACAAG+TGG + chr1_2:76881753-76881772 Msa0093840:intron 25.0%
! TGTATACTAGTATAGTATAG+GGG - chr1_2:76881933-76881952 None:intergenic 25.0%
! GTGTATACTAGTATAGTATA+GGG - chr1_2:76881934-76881953 None:intergenic 25.0%
! CTATACTATACTAGTATACA+CGG + chr1_2:76881933-76881952 Msa0093840:intron 25.0%
! GATATGATACTTTAGGTAAA+TGG + chr1_2:76882045-76882064 Msa0093840:intron 25.0%
! ATACTTTAGGTAAATGGAAA+GGG + chr1_2:76882051-76882070 Msa0093840:intron 25.0%
! AGGTTACCAAAAAGTTAAAT+GGG - chr1_2:76882929-76882948 None:intergenic 25.0%
! AAGGTTACCAAAAAGTTAAA+TGG - chr1_2:76882930-76882949 None:intergenic 25.0%
! CACATAAATCAAGAGATATA+AGG - chr1_2:76882949-76882968 None:intergenic 25.0%
!! ACAAAAATTTTGTCAAGTCT+TGG + chr1_2:76883043-76883062 Msa0093840:five_prime_UTR 25.0%
!! TTGGTAGCTATTAATCATAT+AGG + chr1_2:76883062-76883081 Msa0093840:five_prime_UTR 25.0%
! TCATATAGGATATATAGGAT+TGG + chr1_2:76883076-76883095 Msa0093840:five_prime_UTR 25.0%
!! CAAAAGTTCTCTTTCTTTTA+TGG + chr1_2:76883207-76883226 Msa0093840:five_prime_UTR 25.0%
!!! TTCACTTTACTTTTAATCAC+AGG - chr1_2:76883292-76883311 None:intergenic 25.0%
! TGTGATTAAAAGTAAAGTGA+AGG + chr1_2:76883291-76883310 Msa0093840:five_prime_UTR 25.0%
! ATACAATATGTATGAACTCA+GGG + chr1_2:76883455-76883474 Msa0093840:five_prime_UTR 25.0%
! AAATAGAACAATGACATTTC+TGG + chr1_2:76883507-76883526 Msa0093840:five_prime_UTR 25.0%
! TACCATAATAGCACATATAT+AGG - chr1_2:76883582-76883601 None:intergenic 25.0%
GTACATGTGAGAAAGATAAA+AGG - chr1_2:76880901-76880920 None:intergenic 30.0%
AAGAAGAAGAAGAAGAAAGT+AGG + chr1_2:76880944-76880963 Msa0093840:five_prime_UTR 30.0%
!! ATTGATTTGATTGCTACTAG+CGG + chr1_2:76880974-76880993 Msa0093840:five_prime_UTR 30.0%
! AAACTATGATTTTTCCTGTC+AGG + chr1_2:76881159-76881178 Msa0093840:five_prime_UTR 30.0%
ATACAATTACAAACCATCCA+TGG + chr1_2:76881271-76881290 Msa0093840:intron 30.0%
ATTGACACTGATCATCATAA+TGG - chr1_2:76881523-76881542 None:intergenic 30.0%
TCAGTGTCAATATTTGCTTT+CGG + chr1_2:76881532-76881551 Msa0093840:intron 30.0%
AATTTGTCATGAACTTGAAG+TGG - chr1_2:76881585-76881604 None:intergenic 30.0%
TTTATAATGGCATTAGACGT+AGG - chr1_2:76881615-76881634 None:intergenic 30.0%
! TTAACAACATATTTTCAGCC+AGG + chr1_2:76881678-76881697 Msa0093840:intron 30.0%
! ATATTTTCAGCCAGGATATA+CGG + chr1_2:76881686-76881705 Msa0093840:intron 30.0%
TTTAAGGGAAAAAACTTAGG+TGG - chr1_2:76881712-76881731 None:intergenic 30.0%
AAAATACATGATACAAGTGG+TGG + chr1_2:76881756-76881775 Msa0093840:intron 30.0%
CGTGTATACTAGTATAGTAT+AGG - chr1_2:76881935-76881954 None:intergenic 30.0%
GATGGATGATATGATACTTT+AGG + chr1_2:76882038-76882057 Msa0093840:intron 30.0%
GATACTTTAGGTAAATGGAA+AGG + chr1_2:76882050-76882069 Msa0093840:intron 30.0%
TACTTTAGGTAAATGGAAAG+GGG + chr1_2:76882052-76882071 Msa0093840:intron 30.0%
ATTCTCTACAGATACTTCTT+GGG - chr1_2:76882283-76882302 None:intergenic 30.0%
TATTCTCTACAGATACTTCT+TGG - chr1_2:76882284-76882303 None:intergenic 30.0%
TACATGCATGATTGAATGTA+AGG - chr1_2:76882345-76882364 None:intergenic 30.0%
! TACTCAATAACTCCATTTTG+AGG + chr1_2:76882801-76882820 Msa0093840:five_prime_UTR 30.0%
TCTTTAATTAACAGCAAAGC+AGG + chr1_2:76882836-76882855 Msa0093840:five_prime_UTR 30.0%
TTATGTGAACCTTCCTAATT+CGG + chr1_2:76882962-76882981 Msa0093840:five_prime_UTR 30.0%
TGTGAAAATCACTTTCTGTA+AGG + chr1_2:76883007-76883026 Msa0093840:five_prime_UTR 30.0%
! CTTTTGTATTACCGAATGAT+GGG - chr1_2:76883193-76883212 None:intergenic 30.0%
! ACTTTTGTATTACCGAATGA+TGG - chr1_2:76883194-76883213 None:intergenic 30.0%
!! ACTTTACTTTTAATCACAGG+TGG - chr1_2:76883289-76883308 None:intergenic 30.0%
GATACAATATGTATGAACTC+AGG + chr1_2:76883454-76883473 Msa0093840:five_prime_UTR 30.0%
! CTCCTATATATGTGCTATTA+TGG + chr1_2:76883577-76883596 Msa0093840:five_prime_UTR 30.0%
CATAGATTGAGGAAAAAGTA+AGG + chr1_2:76883651-76883670 Msa0093840:five_prime_UTR 30.0%
AAAAGTAAGGAAGAGAGTTA+AGG + chr1_2:76883664-76883683 Msa0093840:five_prime_UTR 30.0%
ACAACCATACAATATTTCAG+TGG - chr1_2:76884176-76884195 None:intergenic 30.0%
GTTCAAAAATTCCAGAACAT+GGG - chr1_2:76884361-76884380 None:intergenic 30.0%
TGTTCAAAAATTCCAGAACA+TGG - chr1_2:76884362-76884381 None:intergenic 30.0%
GTGAGAAAGATAAAAGGACA+AGG - chr1_2:76880895-76880914 None:intergenic 35.0%
AAGACAGTAGTAGTATCATG+TGG + chr1_2:76881095-76881114 Msa0093840:five_prime_UTR 35.0%
ACAAACTTGATCTTGCTTTC+AGG + chr1_2:76881341-76881360 Msa0093840:intron 35.0%
TGATCATCATAATGGTTGGT+TGG - chr1_2:76881515-76881534 None:intergenic 35.0%
ACACTGATCATCATAATGGT+TGG - chr1_2:76881519-76881538 None:intergenic 35.0%
AAGTTGCACTGAAAAAGATG+TGG - chr1_2:76881839-76881858 None:intergenic 35.0%
TTTATACCACTTTCATCGTG+CGG + chr1_2:76881857-76881876 Msa0093840:intron 35.0%
!! ATGCTTCAAAAAGTGTCCTA+TGG + chr1_2:76881961-76881980 Msa0093840:intron 35.0%
! CACAAGATTTTCTCCTTCTT+GGG - chr1_2:76882089-76882108 None:intergenic 35.0%
! ACACAAGATTTTCTCCTTCT+TGG - chr1_2:76882090-76882109 None:intergenic 35.0%
AAGAAGGAGAAAATCTTGTG+TGG + chr1_2:76882089-76882108 Msa0093840:intron 35.0%
AAAAAGAGAAGAGAGAGAAG+AGG + chr1_2:76882151-76882170 Msa0093840:intron 35.0%
AAAAGAGAAGAGAGAGAAGA+GGG + chr1_2:76882152-76882171 Msa0093840:intron 35.0%
GTGACCAAAACCAAAATTCT+TGG + chr1_2:76882233-76882252 Msa0093840:intron 35.0%
!!! AGGACCAAGAATTTTGGTTT+TGG - chr1_2:76882240-76882259 None:intergenic 35.0%
AAAACCAAAATTCTTGGTCC+TGG + chr1_2:76882239-76882258 Msa0093840:intron 35.0%
TTCTCTACAGATACTTCTTG+GGG - chr1_2:76882282-76882301 None:intergenic 35.0%
CAAGATGATGTACAAACTTG+TGG + chr1_2:76882418-76882437 Msa0093840:five_prime_UTR 35.0%
ATGAAGATGTACAAGTGATG+TGG + chr1_2:76882443-76882462 Msa0093840:five_prime_UTR 35.0%
TGAAGATGTACAAGTGATGT+GGG + chr1_2:76882444-76882463 Msa0093840:five_prime_UTR 35.0%
TGAGGTTTATCTCTTACAAC+TGG + chr1_2:76882735-76882754 Msa0093840:five_prime_UTR 35.0%
GCAGTAACTATTCCTCAAAA+TGG - chr1_2:76882816-76882835 None:intergenic 35.0%
ACCTTGTGTTGTGTGTTAAA+AGG + chr1_2:76882894-76882913 Msa0093840:five_prime_UTR 35.0%
! TCCTTTTAACACACAACACA+AGG - chr1_2:76882898-76882917 None:intergenic 35.0%
TATGTGAACCTTCCTAATTC+GGG + chr1_2:76882963-76882982 Msa0093840:five_prime_UTR 35.0%
ATTGGAACTTAACCCGAATT+AGG - chr1_2:76882978-76882997 None:intergenic 35.0%
TTTCTGTAAGGTATGAGTGA+TGG + chr1_2:76883019-76883038 Msa0093840:five_prime_UTR 35.0%
TGGATGCAGAAAATTAGCAA+TGG + chr1_2:76883096-76883115 Msa0093840:five_prime_UTR 35.0%
AGATACTTCACCAAGACTTA+TGG - chr1_2:76883130-76883149 None:intergenic 35.0%
TTTGATCACAGGTGAAACAA+GGG - chr1_2:76883317-76883336 None:intergenic 35.0%
ATTTGATCACAGGTGAAACA+AGG - chr1_2:76883318-76883337 None:intergenic 35.0%
ATCAGCAAAGAAGTTATTCC+AGG + chr1_2:76883373-76883392 Msa0093840:five_prime_UTR 35.0%
ATTGTATCCTGCAACTTACA+AGG - chr1_2:76883442-76883461 None:intergenic 35.0%
GGATTTGTAGGAGATAATAC+TGG + chr1_2:76883743-76883762 Msa0093840:five_prime_UTR 35.0%
TGCACCACTGAAATATTGTA+TGG + chr1_2:76884169-76884188 Msa0093840:CDS 35.0%
CAATTTGGTTAAAGCTGTTG+TGG - chr1_2:76884200-76884219 None:intergenic 35.0%
! CACAACAGCTTTAACCAAAT+TGG + chr1_2:76884198-76884217 Msa0093840:CDS 35.0%
! TAGTTTGATTTCCCATGTTC+TGG + chr1_2:76884347-76884366 Msa0093840:three_prime_UTR 35.0%
TTTGAACATCAAAGTAGTCG+AGG + chr1_2:76884374-76884393 Msa0093840:three_prime_UTR 35.0%
! AGTTTATTTCGCTTGCTAGT+TGG + chr1_2:76884500-76884519 Msa0093840:three_prime_UTR 35.0%
! GTTTATTTCGCTTGCTAGTT+GGG + chr1_2:76884501-76884520 Msa0093840:three_prime_UTR 35.0%
GAAGGACTCTATAGTAGTAG+TGG + chr1_2:76880778-76880797 Msa0093840:five_prime_UTR 40.0%
! AGTAGTAGTGGAATTGAGAG+AGG + chr1_2:76880790-76880809 Msa0093840:five_prime_UTR 40.0%
CAACACTATTCTCTTTGACC+AGG - chr1_2:76881006-76881025 None:intergenic 40.0%
AGAGAATAGTGTTGCCACAT+AGG + chr1_2:76881012-76881031 Msa0093840:five_prime_UTR 40.0%
GGCATGGAAAGAACAAGAAA+TGG + chr1_2:76881057-76881076 Msa0093840:five_prime_UTR 40.0%
ACAGTAGTAGTATCATGTGG+AGG + chr1_2:76881098-76881117 Msa0093840:five_prime_UTR 40.0%
!! AAATAGTACCGTTTTTGCGG+TGG - chr1_2:76881217-76881236 None:intergenic 40.0%
! ATAATGGTTGGTTGGTTGGT+TGG - chr1_2:76881507-76881526 None:intergenic 40.0%
! CATCATAATGGTTGGTTGGT+TGG - chr1_2:76881511-76881530 None:intergenic 40.0%
AAATTGGTTGTGATGCCGAA+AGG - chr1_2:76881656-76881675 None:intergenic 40.0%
! TTGACGTAGCTTAGCTTTCA+GGG - chr1_2:76881885-76881904 None:intergenic 40.0%
! TTTGACGTAGCTTAGCTTTC+AGG - chr1_2:76881886-76881905 None:intergenic 40.0%
CCTGTCTGTCATTAAACCAT+AGG - chr1_2:76881980-76881999 None:intergenic 40.0%
CCTATGGTTTAATGACAGAC+AGG + chr1_2:76881977-76881996 Msa0093840:intron 40.0%
! AGATTTTCTCCTTCTTGGGA+GGG - chr1_2:76882085-76882104 None:intergenic 40.0%
! AAGATTTTCTCCTTCTTGGG+AGG - chr1_2:76882086-76882105 None:intergenic 40.0%
AAGAGGGAAGAGAGAGAAAA+TGG + chr1_2:76882168-76882187 Msa0093840:intron 40.0%
GACATGAGTACATGTTTGTG+TGG + chr1_2:76882367-76882386 Msa0093840:intron 40.0%
AGTACATGTTTGTGTGGTAC+AGG + chr1_2:76882373-76882392 Msa0093840:intron 40.0%
CATACAAAGACTCTCCAGAA+AGG - chr1_2:76882529-76882548 None:intergenic 40.0%
! AGCTTTAGTATGGTTGGAGT+TGG - chr1_2:76882554-76882573 None:intergenic 40.0%
! ATTGCGAGGAAGCTTTAGTA+TGG - chr1_2:76882564-76882583 None:intergenic 40.0%
AGTGTGATTTGAAGATTGCG+AGG - chr1_2:76882578-76882597 None:intergenic 40.0%
ACAGCAAAGCAGGTTTCATA+TGG + chr1_2:76882846-76882865 Msa0093840:five_prime_UTR 40.0%
TGTTGTGTGTTAAAAGGAGC+TGG + chr1_2:76882900-76882919 Msa0093840:five_prime_UTR 40.0%
!! TGGCTGCCCATTTAACTTTT+TGG + chr1_2:76882920-76882939 Msa0093840:five_prime_UTR 40.0%
GAACTTAACCCGAATTAGGA+AGG - chr1_2:76882974-76882993 None:intergenic 40.0%
ACTTCACCAAGACTTATGGA+TGG - chr1_2:76883126-76883145 None:intergenic 40.0%
TACTCAAACCTCACAAGCAT+TGG + chr1_2:76883163-76883182 Msa0093840:five_prime_UTR 40.0%
ACTCAAACCTCACAAGCATT+GGG + chr1_2:76883164-76883183 Msa0093840:five_prime_UTR 40.0%
TATTCCAGGATACAGTCAAG+TGG + chr1_2:76883387-76883406 Msa0093840:five_prime_UTR 40.0%
AGACTTTATCACCCCTGAAT+TGG + chr1_2:76883700-76883719 Msa0093840:five_prime_UTR 40.0%
GACTTTATCACCCCTGAATT+GGG + chr1_2:76883701-76883720 Msa0093840:five_prime_UTR 40.0%
TGTAGGAGATAATACTGGTG+CGG + chr1_2:76883748-76883767 Msa0093840:five_prime_UTR 40.0%
TAATGGAACAGGTGCCAATT+TGG - chr1_2:76884215-76884234 None:intergenic 40.0%
AAATTGGCACCTGTTCCATT+AGG + chr1_2:76884214-76884233 Msa0093840:CDS 40.0%
AAAGTCACAGATCTTAGCAC+AGG - chr1_2:76884268-76884287 None:intergenic 40.0%
GCACATTGTTTCAATCCAGT+GGG - chr1_2:76884318-76884337 None:intergenic 40.0%
AGCACATTGTTTCAATCCAG+TGG - chr1_2:76884319-76884338 None:intergenic 40.0%
ACTGGATTGAAACAATGTGC+TGG + chr1_2:76884318-76884337 Msa0093840:exon 40.0%
ACCTTCTTGATCACATCCAT+TGG + chr1_2:76884415-76884434 Msa0093840:three_prime_UTR 40.0%
ACCAATGGATGTGATCAAGA+AGG - chr1_2:76884419-76884438 None:intergenic 40.0%
!!! TCCATTGGTTTTCCTGAGAT+AGG + chr1_2:76884430-76884449 Msa0093840:three_prime_UTR 40.0%
ACCTATCTCAGGAAAACCAA+TGG - chr1_2:76884434-76884453 None:intergenic 40.0%
ATAGTGTTGCCACATAGGCA+AGG + chr1_2:76881017-76881036 Msa0093840:five_prime_UTR 45.0%
TAGTGTTGCCACATAGGCAA+GGG + chr1_2:76881018-76881037 Msa0093840:five_prime_UTR 45.0%
TGATACGGGTAGATAGAGCA+AGG - chr1_2:76881193-76881212 None:intergenic 45.0%
!! GTTTTTGCGGTGGTTGATAC+GGG - chr1_2:76881207-76881226 None:intergenic 45.0%
!! CGTTTTTGCGGTGGTTGATA+CGG - chr1_2:76881208-76881227 None:intergenic 45.0%
CGTATCAACCACCGCAAAAA+CGG + chr1_2:76881206-76881225 Msa0093840:five_prime_UTR 45.0%
GAGAAAATCTTGTGTGGTCC+TGG + chr1_2:76882095-76882114 Msa0093840:intron 45.0%
! TGGACCAGGACCAAGAATTT+TGG - chr1_2:76882246-76882265 None:intergenic 45.0%
ACATGTTTGTGTGGTACAGG+AGG + chr1_2:76882376-76882395 Msa0093840:intron 45.0%
! CGAGGAAGCTTTAGTATGGT+TGG - chr1_2:76882560-76882579 None:intergenic 45.0%
AAGAACTAGCACTGCAATGC+TGG - chr1_2:76882677-76882696 None:intergenic 45.0%
! AGCATTGCAGTGCTAGTTCT+TGG + chr1_2:76882676-76882695 Msa0093840:five_prime_UTR 45.0%
GGACATCCATCCATAAGTCT+TGG + chr1_2:76883117-76883136 Msa0093840:five_prime_UTR 45.0%
! CTCAAACCTCACAAGCATTG+GGG + chr1_2:76883165-76883184 Msa0093840:five_prime_UTR 45.0%
CTAACCACTTGACTGTATCC+TGG - chr1_2:76883394-76883413 None:intergenic 45.0%
!! GAGTTAGCCTTGTAAGTTGC+AGG + chr1_2:76883432-76883451 Msa0093840:five_prime_UTR 45.0%
! CAATCTATGTGCTGCTGTCT+AGG - chr1_2:76883640-76883659 None:intergenic 45.0%
AGACAGCAGCACATAGATTG+AGG + chr1_2:76883640-76883659 Msa0093840:five_prime_UTR 45.0%
AATCCAGATGAAGCTGCAGA+CGG - chr1_2:76883728-76883747 None:intergenic 45.0%
GCAGCTTCATCTGGATTTGT+AGG + chr1_2:76883731-76883750 Msa0093840:five_prime_UTR 45.0%
GTAGGAGATAATACTGGTGC+GGG + chr1_2:76883749-76883768 Msa0093840:five_prime_UTR 45.0%
! GACTTTACTGGTACTGGAAC+TGG + chr1_2:76883947-76883966 Msa0093840:CDS 45.0%
ACTGGAACTGGAGTAGCTAT+TGG + chr1_2:76883959-76883978 Msa0093840:CDS 45.0%
AGTTATAGTTCCAGTGCCTG+TGG - chr1_2:76884014-76884033 None:intergenic 45.0%
!! ACAGGCACTGGAACTATAAC+TGG + chr1_2:76884013-76884032 Msa0093840:CDS 45.0%
!! ACTATAACTGGTGCTGCAAC+TGG + chr1_2:76884025-76884044 Msa0093840:CDS 45.0%
GCTGGAATACGTGAAACAAC+AGG + chr1_2:76884073-76884092 Msa0093840:CDS 45.0%
ATACGTGAAACAACAGGAGC+CGG + chr1_2:76884079-76884098 Msa0093840:CDS 45.0%
TTGGAGGAAGCAAGCAAAGA+CGG + chr1_2:76884124-76884143 Msa0093840:CDS 45.0%
CCTTCTGATCCTAATGGAAC+AGG - chr1_2:76884226-76884245 None:intergenic 45.0%
CCTGTTCCATTAGGATCAGA+AGG + chr1_2:76884223-76884242 Msa0093840:CDS 45.0%
TCCATTAGGATCAGAAGGAG+AGG + chr1_2:76884228-76884247 Msa0093840:CDS 45.0%
ACCTCTCCTTCTGATCCTAA+TGG - chr1_2:76884232-76884251 None:intergenic 45.0%
TGCTTGCAGTCGATAACAGT+GGG - chr1_2:76884462-76884481 None:intergenic 45.0%
! TTTCGCTTGCTAGTTGGGTT+TGG + chr1_2:76884506-76884525 Msa0093840:three_prime_UTR 45.0%
! TTCGCTTGCTAGTTGGGTTT+GGG + chr1_2:76884507-76884526 Msa0093840:three_prime_UTR 45.0%
TTGCTGTAACTGCTGTATGC+AGG + chr1_2:76884538-76884557 Msa0093840:three_prime_UTR 45.0%
TGCTGTAACTGCTGTATGCA+GGG + chr1_2:76884539-76884558 Msa0093840:three_prime_UTR 45.0%
AACTGCTGTATGCAGGGTAT+TGG + chr1_2:76884545-76884564 Msa0093840:three_prime_UTR 45.0%
! ACTGCTGTATGCAGGGTATT+GGG + chr1_2:76884546-76884565 Msa0093840:three_prime_UTR 45.0%
TTGATTGCTACTAGCGGCAC+TGG + chr1_2:76880980-76880999 Msa0093840:five_prime_UTR 50.0%
ACTTAGGTGGCCGTATATCC+TGG - chr1_2:76881699-76881718 None:intergenic 50.0%
ATCCTTTGATCAGTGCCCTG+CGG + chr1_2:76881795-76881814 Msa0093840:intron 50.0%
CTACCTCTATTGTTGCCGCA+GGG - chr1_2:76881813-76881832 None:intergenic 50.0%
AAAGACCACTTGTGTGGACC+AGG - chr1_2:76882116-76882135 None:intergenic 50.0%
TGGTCCACACAAGTGGTCTT+TGG + chr1_2:76882115-76882134 Msa0093840:intron 50.0%
GTGACCAAAGACCACTTGTG+TGG - chr1_2:76882122-76882141 None:intergenic 50.0%
GAGAAACACTTGTGTGGACC+AGG - chr1_2:76882260-76882279 None:intergenic 50.0%
CTTGGGGAGAAACACTTGTG+TGG - chr1_2:76882266-76882285 None:intergenic 50.0%
AAGGCAGTTGCTTGCGCTTA+TGG - chr1_2:76882510-76882529 None:intergenic 50.0%
GCTTCCACAGGTGATATTCC+CGG + chr1_2:76883773-76883792 Msa0093840:five_prime_UTR 50.0%
AGCTGGAGCTTCAACTGGTA+CGG + chr1_2:76883808-76883827 Msa0093840:five_prime_UTR 50.0%
ACTGGGGACTTTACTGGTAC+TGG + chr1_2:76883941-76883960 Msa0093840:CDS 50.0%
ACTGGAGTAGCTATTGGCAC+CGG + chr1_2:76883965-76883984 Msa0093840:CDS 50.0%
!! ATTGGCACCGGTGAAACTAC+TGG + chr1_2:76883977-76883996 Msa0093840:CDS 50.0%
ACCGGTGAAACTACTGGAAC+TGG + chr1_2:76883983-76884002 Msa0093840:CDS 50.0%
GCCAGTTCCAGTAGTTTCAC+CGG - chr1_2:76883987-76884006 None:intergenic 50.0%
CACATCACATGCTCCTTCTC+CGG - chr1_2:76884101-76884120 None:intergenic 50.0%
! AGGAGCATGTGATGTGGCAT+TGG + chr1_2:76884105-76884124 Msa0093840:CDS 50.0%
! AGCATGTGATGTGGCATTGG+AGG + chr1_2:76884108-76884127 Msa0093840:CDS 50.0%
CAATCCAGTGGGCAAGCTAA+GGG - chr1_2:76884307-76884326 None:intergenic 50.0%
TCAATCCAGTGGGCAAGCTA+AGG - chr1_2:76884308-76884327 None:intergenic 50.0%
CAAAGTAGTCGAGGATGACG+TGG + chr1_2:76884383-76884402 Msa0093840:three_prime_UTR 50.0%
TGCAGTCGATAACAGTGGGA+TGG - chr1_2:76884458-76884477 None:intergenic 50.0%
GTGCTTGCAGTCGATAACAG+TGG - chr1_2:76884463-76884482 None:intergenic 50.0%
TTGCTAGTTGGGTTTGGGTG+AGG + chr1_2:76884512-76884531 Msa0093840:three_prime_UTR 50.0%
TTGCCACATAGGCAAGGGCA+AGG + chr1_2:76881023-76881042 Msa0093840:five_prime_UTR 55.0%
TGCCACATAGGCAAGGGCAA+GGG + chr1_2:76881024-76881043 Msa0093840:five_prime_UTR 55.0%
ATAGGCAAGGGCAAGGGCAA+GGG + chr1_2:76881030-76881049 Msa0093840:five_prime_UTR 55.0%
CCTACCTCTATTGTTGCCGC+AGG - chr1_2:76881814-76881833 None:intergenic 55.0%
CCTGCGGCAACAATAGAGGT+AGG + chr1_2:76881811-76881830 Msa0093840:intron 55.0%
TCTCCTTCTTGGGAGGGTCA+GGG - chr1_2:76882079-76882098 None:intergenic 55.0%
TTCTCCTTCTTGGGAGGGTC+AGG - chr1_2:76882080-76882099 None:intergenic 55.0%
TTGTGTGGTACAGGAGGAGC+AGG + chr1_2:76882382-76882401 Msa0093840:intron 55.0%
TGGTACAGGAGGAGCAGGAT+TGG + chr1_2:76882387-76882406 Msa0093840:intron 55.0%
GCAGTTGCTTGCGCTTATGG+TGG - chr1_2:76882507-76882526 None:intergenic 55.0%
AGCGCAAGCAACTGCCTTTC+TGG + chr1_2:76882512-76882531 Msa0093840:five_prime_UTR 55.0%
GCATTGGGGAGCCCATCATT+CGG + chr1_2:76883179-76883198 Msa0093840:five_prime_UTR 55.0%
TGCAGACGGTCCCAATTCAG+GGG - chr1_2:76883714-76883733 None:intergenic 55.0%
CTGCAGACGGTCCCAATTCA+GGG - chr1_2:76883715-76883734 None:intergenic 55.0%
GCTGGAGCTTCAACTGGTAC+GGG + chr1_2:76883809-76883828 Msa0093840:five_prime_UTR 55.0%
GCTTCAACTGGTACGGGTAC+TGG + chr1_2:76883815-76883834 Msa0093840:five_prime_UTR 55.0%
TACTGGAGCTGGAGCTGGTA+CGG + chr1_2:76883832-76883851 Msa0093840:five_prime_UTR 55.0%
ATTGGAGCTGGAGCTGTAGC+TGG + chr1_2:76883887-76883906 Msa0093840:five_prime_UTR 55.0%
AGCTGGAGCTGTAGCTGGTA+TGG + chr1_2:76883892-76883911 Msa0093840:exon 55.0%
GCTGTAGCTGGTATGGCTAC+TGG + chr1_2:76883899-76883918 Msa0093840:exon 55.0%
ACCAGTAAAGTCCCCAGTGC+CGG - chr1_2:76883939-76883958 None:intergenic 55.0%
ACTGGAACTGGCGATACCAC+AGG + chr1_2:76883995-76884014 Msa0093840:CDS 55.0%
!! ACTGGCACTGGTGATACCAC+TGG + chr1_2:76884043-76884062 Msa0093840:CDS 55.0%
ACTGGTGATACCACTGGCAC+AGG + chr1_2:76884049-76884068 Msa0093840:CDS 55.0%
TATTCCAGCTCCTGTGCCAG+TGG - chr1_2:76884062-76884081 None:intergenic 55.0%
GAAACAACAGGAGCCGGAGA+AGG + chr1_2:76884085-76884104 Msa0093840:CDS 55.0%
! CGGAGAAGGAGCATGTGATG+TGG + chr1_2:76884099-76884118 Msa0093840:CDS 55.0%
GAGGAAGCAAGCAAAGACGG+TGG + chr1_2:76884127-76884146 Msa0093840:CDS 55.0%
CAGTGGGCAAGCTAAGGGAT+CGG - chr1_2:76884302-76884321 None:intergenic 55.0%
AGTGGGATGGCACCTATCTC+AGG - chr1_2:76884445-76884464 None:intergenic 55.0%
TGCCCTTGCCCTTGCCTATG+TGG - chr1_2:76881029-76881048 None:intergenic 60.0%
CATAGGCAAGGGCAAGGGCA+AGG + chr1_2:76881029-76881048 Msa0093840:five_prime_UTR 60.0%
GCAAGGCATAGACGCCTGAC+AGG - chr1_2:76881176-76881195 None:intergenic 60.0%
!! TGCCGCAGGGCACTGATCAA+AGG - chr1_2:76881800-76881819 None:intergenic 60.0%
GTGCCCTGCGGCAACAATAG+AGG + chr1_2:76881807-76881826 Msa0093840:intron 60.0%
!! AGGGCACCGCACGATGAAAG+TGG - chr1_2:76881866-76881885 None:intergenic 60.0%
GTGGTCCTGGTCCACACAAG+TGG + chr1_2:76882108-76882127 Msa0093840:intron 60.0%
TGGGCTCCCCAATGCTTGTG+AGG - chr1_2:76883174-76883193 None:intergenic 60.0%
GCTGCAGACGGTCCCAATTC+AGG - chr1_2:76883716-76883735 None:intergenic 60.0%
GGACCGTCTGCAGCTTCATC+TGG + chr1_2:76883722-76883741 Msa0093840:five_prime_UTR 60.0%
AGGGCCGGGAATATCACCTG+TGG - chr1_2:76883780-76883799 None:intergenic 60.0%
ACAGGTGATATTCCCGGCCC+TGG + chr1_2:76883779-76883798 Msa0093840:five_prime_UTR 60.0%
AAGCTCCAGCTCCAGCTCCA+GGG - chr1_2:76883799-76883818 None:intergenic 60.0%
GCTGGAGCTGGAGCTTCAAC+TGG + chr1_2:76883803-76883822 Msa0093840:five_prime_UTR 60.0%
!! ACTGGTACGGGTACTGGAGC+TGG + chr1_2:76883821-76883840 Msa0093840:five_prime_UTR 60.0%
AGCTGGAGCTGCAGCAGGTA+CGG + chr1_2:76883862-76883881 Msa0093840:five_prime_UTR 60.0%
GCTGCAGCAGGTACGGCTAT+TGG + chr1_2:76883869-76883888 Msa0093840:five_prime_UTR 60.0%
GCAGGTACGGCTATTGGAGC+TGG + chr1_2:76883875-76883894 Msa0093840:five_prime_UTR 60.0%
GCTGGTATGGCTACTGGAGC+TGG + chr1_2:76883905-76883924 Msa0093840:exon 60.0%
ACTGGAGCTGGAGCTGCTAC+CGG + chr1_2:76883917-76883936 Msa0093840:CDS 60.0%
! ACCGGCACTGGGGACTTTAC+TGG + chr1_2:76883935-76883954 Msa0093840:CDS 60.0%
ACTGGCGATACCACAGGCAC+TGG + chr1_2:76884001-76884020 Msa0093840:CDS 60.0%
!! ACTGGTGCTGCAACTGGCAC+TGG + chr1_2:76884031-76884050 Msa0093840:CDS 60.0%
GATACCACTGGCACAGGAGC+TGG + chr1_2:76884055-76884074 Msa0093840:CDS 60.0%
GGGCAAGCTAAGGGATCGGA+GGG - chr1_2:76884298-76884317 None:intergenic 60.0%
TGGGCAAGCTAAGGGATCGG+AGG - chr1_2:76884299-76884318 None:intergenic 60.0%
!! CGATCCCTTAGCTTGCCCAC+TGG + chr1_2:76884300-76884319 Msa0093840:CDS 60.0%
!! TGCTACTAGCGGCACTGGCC+TGG + chr1_2:76880985-76881004 Msa0093840:five_prime_UTR 65.0%
CAAGGGCAAGGGCAAGGGCA+GGG + chr1_2:76881035-76881054 Msa0093840:five_prime_UTR 65.0%
AAGGGCAAGGGCAAGGGCAG+GGG + chr1_2:76881036-76881055 Msa0093840:five_prime_UTR 65.0%
GGTCCCTGACCCTCCCAAGA+AGG + chr1_2:76882073-76882092 Msa0093840:intron 65.0%
ACTGGTGCGGGAGCTTCCAC+AGG + chr1_2:76883761-76883780 Msa0093840:five_prime_UTR 65.0%
GATATTCCCGGCCCTGGAGC+TGG + chr1_2:76883785-76883804 Msa0093840:five_prime_UTR 65.0%
GAAGCTCCAGCTCCAGCTCC+AGG - chr1_2:76883800-76883819 None:intergenic 65.0%
!! ACGGGTACTGGAGCTGGAGC+TGG + chr1_2:76883827-76883846 Msa0093840:five_prime_UTR 65.0%
GCTGGAGCTGGTACGGCAAC+TGG + chr1_2:76883839-76883858 Msa0093840:five_prime_UTR 65.0%
GCTGGTACGGCAACTGGAGC+TGG + chr1_2:76883845-76883864 Msa0093840:five_prime_UTR 65.0%
ACTGGAGCTGGAGCTGCAGC+AGG + chr1_2:76883857-76883876 Msa0093840:five_prime_UTR 65.0%
CTGGAGCTGCTACCGGCACT+GGG + chr1_2:76883924-76883943 Msa0093840:CDS 65.0%
TGGAGCTGCTACCGGCACTG+GGG + chr1_2:76883925-76883944 Msa0093840:CDS 65.0%
GCAAGGGCAAGGGCAAGGGC+AGG + chr1_2:76881034-76881053 Msa0093840:five_prime_UTR 70.0%
CAAGGGCAAGGGCAGGGGCA+TGG + chr1_2:76881041-76881060 Msa0093840:five_prime_UTR 70.0%
TCCAGCTCCAGCTCCAGGGC+CGG - chr1_2:76883795-76883814 None:intergenic 70.0%
GCTGGAGCTGCTACCGGCAC+TGG + chr1_2:76883923-76883942 Msa0093840:CDS 70.0%
CCAGCTCCAGCTCCAGGGCC+GGG - chr1_2:76883794-76883813 None:intergenic 75.0%
! CCCGGCCCTGGAGCTGGAGC+TGG + chr1_2:76883791-76883810 Msa0093840:five_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 76880744 76884606 76880744 ID=Msa0093840;Name=Msa0093840
chr1_2 mRNA 76880744 76884606 76880744 ID=Msa0093840-mRNA-1;Parent=Msa0093840;Name=Msa0093840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=2000|1|1|1|1|1|2|279|138
chr1_2 exon 76880744 76881227 76880744 ID=Msa0093840-mRNA-1:exon:27123;Parent=Msa0093840-mRNA-1
chr1_2 exon 76882395 76884606 76882395 ID=Msa0093840-mRNA-1:exon:27124;Parent=Msa0093840-mRNA-1
chr1_2 five_prime_UTR 76880744 76881227 76880744 ID=Msa0093840-mRNA-1:five_prime_utr;Parent=Msa0093840-mRNA-1
chr1_2 five_prime_UTR 76882395 76883910 76882395 ID=Msa0093840-mRNA-1:five_prime_utr;Parent=Msa0093840-mRNA-1
chr1_2 CDS 76883911 76884327 76883911 ID=Msa0093840-mRNA-1:cds;Parent=Msa0093840-mRNA-1
chr1_2 three_prime_UTR 76884328 76884606 76884328 ID=Msa0093840-mRNA-1:three_prime_utr;Parent=Msa0093840-mRNA-1
Gene Sequence

>Msa0093840

ATGGCTACTGGAGCTGGAGCTGCTACCGGCACTGGGGACTTTACTGGTACTGGAACTGGAGTAGCTATTGGCACCGGTGAAACTACTGGAACTGGCGATACCACAGGCACTGGAACTATAACTGGTGCTGCAACTGGCACTGGTGATACCACTGGCACAGGAGCTGGAATACGTGAAACAACAGGAGCCGGAGAAGGAGCATGTGATGTGGCATTGGAGGAAGCAAGCAAAGACGGTGGCAAAATGACAGTGCTGATCTGCACCACTGAAATATTGTATGGTTGTGCCACAACAGCTTTAACCAAATTGGCACCTGTTCCATTAGGATCAGAAGGAGAGGTAAAAGTGACAGCACCTGTGCTAAGATCTGTGACTTTCATGAAACCCTCCGATCCCTTAGCTTGCCCACTGGATTGA
Protein sequence

>Msa0093840

MATGAGAATGTGDFTGTGTGVAIGTGETTGTGDTTGTGTITGAATGTGDTTGTGAGIRETTGAGEGACDVALEEASKDGGKMTVLICTTEILYGCATTALTKLAPVPLGSEGEVKVTAPVLRSVTFMKPSDPLACPLD*