Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342020 | XP_003597730.1 | 97.076 | 171 | 4 | 1 | 1 | 170 | 1 | 171 | 1.05e-120 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342020 | sp|Q9M815|PCR8_ARATH | 63.576 | 151 | 52 | 2 | 21 | 170 | 42 | 190 | 6.58e-71 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342020 | Q2HU50 | 97.076 | 171 | 4 | 1 | 1 | 170 | 1 | 171 | 5.03e-121 | 347 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0342020 | Msa0342040 | 0.915212 | 7.696702e-85 | -8.615850e-47 |
| Msa0342020 | Msa0861820 | 0.814895 | 1.220309e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342020 | MtrunA17_Chr2g0331531 | 97.076 | 171 | 4 | 1 | 1 | 170 | 1 | 171 | 9.69e-125 | 347 |
| Msa0342020 | MtrunA17_Chr4g0045011 | 40.458 | 131 | 78 | 0 | 32 | 162 | 64 | 194 | 1.13e-29 | 107 |
| Msa0342020 | MtrunA17_Chr8g0391441 | 34.320 | 169 | 108 | 1 | 2 | 170 | 4 | 169 | 1.40e-27 | 101 |
| Msa0342020 | MtrunA17_Chr4g0045001 | 42.149 | 121 | 66 | 1 | 25 | 141 | 40 | 160 | 1.19e-26 | 99.0 |
| Msa0342020 | MtrunA17_Chr8g0391431 | 38.938 | 113 | 69 | 0 | 32 | 144 | 52 | 164 | 3.77e-26 | 98.6 |
| Msa0342020 | MtrunA17_Chr1g0187341 | 46.903 | 113 | 59 | 1 | 32 | 144 | 12 | 123 | 8.19e-26 | 95.9 |
| Msa0342020 | MtrunA17_Chr5g0402421 | 37.931 | 116 | 69 | 1 | 32 | 144 | 52 | 167 | 1.01e-24 | 94.7 |
| Msa0342020 | MtrunA17_Chr6g0484871 | 37.795 | 127 | 74 | 2 | 20 | 142 | 2 | 127 | 1.27e-22 | 88.2 |
| Msa0342020 | MtrunA17_Chr8g0391401 | 35.172 | 145 | 82 | 4 | 25 | 161 | 2 | 142 | 1.49e-21 | 85.5 |
| Msa0342020 | MtrunA17_Chr5g0405841 | 27.528 | 178 | 99 | 5 | 1 | 168 | 257 | 414 | 3.89e-12 | 63.2 |
| Msa0342020 | MtrunA17_Chr2g0280931 | 28.571 | 140 | 68 | 6 | 32 | 144 | 76 | 210 | 1.05e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342020 | AT1G52200.1 | 63.576 | 151 | 52 | 2 | 21 | 170 | 42 | 190 | 6.69e-72 | 215 |
| Msa0342020 | AT1G52200.2 | 65.891 | 129 | 44 | 0 | 21 | 149 | 42 | 170 | 3.79e-65 | 197 |
| Msa0342020 | AT1G49030.1 | 44.898 | 147 | 79 | 1 | 22 | 168 | 78 | 222 | 1.07e-36 | 126 |
| Msa0342020 | AT3G18470.1 | 47.788 | 113 | 59 | 0 | 32 | 144 | 5 | 117 | 1.42e-36 | 123 |
| Msa0342020 | AT3G18460.1 | 41.606 | 137 | 72 | 2 | 32 | 168 | 54 | 182 | 1.03e-34 | 120 |
| Msa0342020 | AT3G18450.1 | 40.559 | 143 | 79 | 3 | 26 | 168 | 46 | 182 | 4.98e-32 | 113 |
| Msa0342020 | AT1G58320.1 | 51.327 | 113 | 53 | 2 | 32 | 143 | 17 | 128 | 3.84e-31 | 110 |
| Msa0342020 | AT1G68630.1 | 41.441 | 111 | 64 | 1 | 32 | 142 | 29 | 138 | 1.32e-27 | 101 |
| Msa0342020 | AT5G35525.1 | 35.252 | 139 | 88 | 1 | 32 | 170 | 16 | 152 | 9.58e-27 | 99.4 |
| Msa0342020 | AT1G14870.1 | 38.843 | 121 | 74 | 0 | 32 | 152 | 16 | 136 | 1.43e-26 | 98.6 |
| Msa0342020 | AT1G14880.1 | 38.053 | 113 | 70 | 0 | 32 | 144 | 15 | 127 | 8.91e-24 | 91.7 |
| Msa0342020 | AT1G14870.2 | 40.000 | 110 | 66 | 0 | 32 | 141 | 16 | 125 | 1.30e-23 | 90.9 |
| Msa0342020 | AT1G68610.1 | 37.324 | 142 | 84 | 3 | 32 | 170 | 19 | 158 | 1.19e-20 | 83.6 |
| Msa0342020 | AT2G40935.8 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.08e-15 | 71.6 |
| Msa0342020 | AT2G40935.9 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.08e-15 | 71.6 |
| Msa0342020 | AT2G40935.1 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.08e-15 | 71.6 |
| Msa0342020 | AT2G40935.6 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.08e-15 | 71.6 |
| Msa0342020 | AT2G40935.5 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.08e-15 | 71.6 |
| Msa0342020 | AT2G40935.3 | 34.694 | 98 | 47 | 2 | 51 | 132 | 55 | 151 | 3.86e-12 | 61.6 |
| Msa0342020 | AT2G40935.2 | 34.694 | 98 | 47 | 2 | 51 | 132 | 42 | 138 | 9.48e-12 | 60.5 |
| Msa0342020 | AT2G40935.7 | 34.694 | 98 | 47 | 2 | 51 | 132 | 42 | 138 | 9.48e-12 | 60.5 |
| Msa0342020 | AT2G40935.4 | 34.694 | 98 | 47 | 2 | 51 | 132 | 42 | 138 | 9.48e-12 | 60.5 |
| Msa0342020 | AT4G35920.1 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 5.19e-11 | 60.5 |
| Msa0342020 | AT4G35920.5 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 5.19e-11 | 60.5 |
| Msa0342020 | AT4G35920.4 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 5.19e-11 | 60.5 |
| Msa0342020 | AT4G35920.2 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 5.19e-11 | 60.5 |
| Msa0342020 | AT4G35920.3 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 5.19e-11 | 60.5 |
Find 39 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGATATTACCATTTGTT+TGG | 0.364288 | 2_4:-63938804 | None:intergenic |
| GTTAAGGAAGAAGTATGATT+TGG | 0.371388 | 2_4:+63939558 | Msa0342020:CDS |
| TTCAGAGAGCTCAAAATTAG+AGG | 0.383494 | 2_4:+63939646 | Msa0342020:CDS |
| TTTGTGCACACAATGGATTA+TGG | 0.383643 | 2_4:+63939516 | Msa0342020:CDS |
| TTGTGCACACAATGGATTAT+GGG | 0.412784 | 2_4:+63939517 | Msa0342020:CDS |
| ATAATGTAAGGTTGCCATCT+TGG | 0.416334 | 2_4:+63939463 | Msa0342020:intron |
| TCATACCTTGAGCCAACAAC+AGG | 0.458603 | 2_4:-63938718 | None:intergenic |
| GAGGGAGGATTGTTCAATGT+TGG | 0.461435 | 2_4:-63939829 | None:intergenic |
| AGAGGACTTGACCCTGCTCT+TGG | 0.473756 | 2_4:+63939664 | Msa0342020:CDS |
| CAAAGTATAGAACAAAGTTA+AGG | 0.474519 | 2_4:+63939542 | Msa0342020:CDS |
| TGGACAGATAGCAGAAGTAT+TGG | 0.475164 | 2_4:+63939346 | Msa0342020:CDS |
| CAACAGCAGGAACCTGTTGT+TGG | 0.477266 | 2_4:+63938706 | Msa0342020:CDS |
| GTGAATTAAATACCAAGAGC+AGG | 0.481342 | 2_4:-63939676 | None:intergenic |
| GTAGGGAGTCCATGGAGTAC+TGG | 0.489984 | 2_4:+63938760 | Msa0342020:CDS |
| CTAATACAATTCAGCAAGTA+GGG | 0.490574 | 2_4:+63938743 | Msa0342020:CDS |
| GCTAATACAATTCAGCAAGT+AGG | 0.494698 | 2_4:+63938742 | Msa0342020:CDS |
| TTAGACATGAATTGAGTTGA+GGG | 0.500404 | 2_4:-63939847 | None:intergenic |
| AAGGAAGAAGTATGATTTGG+TGG | 0.502714 | 2_4:+63939561 | Msa0342020:CDS |
| ATCCATTGTGTGCACAAAGC+AGG | 0.505668 | 2_4:-63939511 | None:intergenic |
| CTCTCTGAACTCTTGACATA+GGG | 0.516209 | 2_4:-63939632 | None:intergenic |
| ACAAAGCAGGCATCATTAGC+AGG | 0.519823 | 2_4:-63939498 | None:intergenic |
| TTCAGCAAGTAGGGAGTCCA+TGG | 0.521718 | 2_4:+63938752 | Msa0342020:CDS |
| TGTCATGAGAACCAAACAAA+TGG | 0.529201 | 2_4:+63938793 | Msa0342020:CDS |
| GCTCTCTGAACTCTTGACAT+AGG | 0.530518 | 2_4:-63939633 | None:intergenic |
| CTTAGACATGAATTGAGTTG+AGG | 0.545566 | 2_4:-63939848 | None:intergenic |
| AGGAACCTGTTGTTGGCTCA+AGG | 0.566558 | 2_4:+63938713 | Msa0342020:CDS |
| GGTAAATGAAGCTTCCAAGA+TGG | 0.581380 | 2_4:-63939477 | None:intergenic |
| GACATGAATTGAGTTGAGGG+AGG | 0.606886 | 2_4:-63939844 | None:intergenic |
| TCAAATAGTCCAGTACTCCA+TGG | 0.612473 | 2_4:-63938769 | None:intergenic |
| GGAGCAGAAGACTCAACAGC+AGG | 0.615251 | 2_4:+63938693 | Msa0342020:CDS |
| CAGATAGCAGAAGTATTGGA+TGG | 0.622869 | 2_4:+63939350 | Msa0342020:CDS |
| TTGAGTCTTCTGCTCCTCAG+TGG | 0.624600 | 2_4:-63938686 | None:intergenic |
| TGAATTAAATACCAAGAGCA+GGG | 0.629149 | 2_4:-63939675 | None:intergenic |
| ATCTGTCCAAATGTTACACA+AGG | 0.643300 | 2_4:-63939332 | None:intergenic |
| TGCCTGCTTTGTGCACACAA+TGG | 0.656127 | 2_4:+63939509 | Msa0342020:CDS |
| TGAGAAATCACATCTGAATG+TGG | 0.657682 | 2_4:-63939589 | None:intergenic |
| ATAGCAGAAGTATTGGATGG+TGG | 0.672429 | 2_4:+63939353 | Msa0342020:CDS |
| AAGGGAGATGCAGACCACTG+AGG | 0.731299 | 2_4:+63938672 | None:intergenic |
| TCTTGACATAGGGAACAACA+AGG | 0.757057 | 2_4:-63939622 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTAATCAAATACA+TGG | - | chr2_4:63939414-63939433 | None:intergenic | 10.0% |
| !!! | ATTTTATTTAATCAAATACA+TGG | - | chr2_4:63939414-63939433 | None:intergenic | 10.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | + | chr2_4:63939082-63939101 | Msa0342020:intron | 15.0% |
| !!! | ATATATACCTTCTTTTTTTA+TGG | + | chr2_4:63939282-63939301 | Msa0342020:intron | 15.0% |
| !! | TTGTTAATTGTAATAATGTA+AGG | + | chr2_4:63939451-63939470 | Msa0342020:intron | 15.0% |
| !! | TTTATTCATCAAATATAAAG+TGG | - | chr2_4:63939704-63939723 | None:intergenic | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | + | chr2_4:63939082-63939101 | Msa0342020:intron | 15.0% |
| !!! | ATATATACCTTCTTTTTTTA+TGG | + | chr2_4:63939282-63939301 | Msa0342020:intron | 15.0% |
| !! | TTGTTAATTGTAATAATGTA+AGG | + | chr2_4:63939451-63939470 | Msa0342020:intron | 15.0% |
| !! | TTTATTCATCAAATATAAAG+TGG | - | chr2_4:63939704-63939723 | None:intergenic | 15.0% |
| !! | AGAAAAAACTTGATGAAATT+TGG | + | chr2_4:63938913-63938932 | Msa0342020:intron | 20.0% |
| !! | ATTACTTAAGAAATTCAACA+AGG | - | chr2_4:63938949-63938968 | None:intergenic | 20.0% |
| !! | CAATGAAATAATAATGTGTT+TGG | - | chr2_4:63939224-63939243 | None:intergenic | 20.0% |
| !! | AGAAAAAACTTGATGAAATT+TGG | + | chr2_4:63938913-63938932 | Msa0342020:intron | 20.0% |
| !! | ATTACTTAAGAAATTCAACA+AGG | - | chr2_4:63938949-63938968 | None:intergenic | 20.0% |
| !! | CAATGAAATAATAATGTGTT+TGG | - | chr2_4:63939224-63939243 | None:intergenic | 20.0% |
| ! | AGAAGATATTACCATTTGTT+TGG | - | chr2_4:63938807-63938826 | None:intergenic | 25.0% |
| ! | AAACAAACTAAGTAGTTCAA+TGG | - | chr2_4:63938841-63938860 | None:intergenic | 25.0% |
| ! | ACAATTCATAGTTCATAGTA+GGG | - | chr2_4:63939162-63939181 | None:intergenic | 25.0% |
| ! | AACAATTCATAGTTCATAGT+AGG | - | chr2_4:63939163-63939182 | None:intergenic | 25.0% |
| ! | TTGTTAAACTTGTAATATGC+AGG | + | chr2_4:63939241-63939260 | Msa0342020:intron | 25.0% |
| ! | AATCAAATACATGGTGATTT+GGG | - | chr2_4:63939405-63939424 | None:intergenic | 25.0% |
| ! | TAATCAAATACATGGTGATT+TGG | - | chr2_4:63939406-63939425 | None:intergenic | 25.0% |
| ! | CAAAGTATAGAACAAAGTTA+AGG | + | chr2_4:63939542-63939561 | Msa0342020:CDS | 25.0% |
| ! | ATTCATCAAATATAAAGTGG+AGG | - | chr2_4:63939701-63939720 | None:intergenic | 25.0% |
| !!! | ATAACAAATTTTTTGAGTGC+AGG | + | chr2_4:63939760-63939779 | Msa0342020:intron | 25.0% |
| !!! | TAACAAATTTTTTGAGTGCA+GGG | + | chr2_4:63939761-63939780 | Msa0342020:intron | 25.0% |
| ! | AGAAGATATTACCATTTGTT+TGG | - | chr2_4:63938807-63938826 | None:intergenic | 25.0% |
| ! | AAACAAACTAAGTAGTTCAA+TGG | - | chr2_4:63938841-63938860 | None:intergenic | 25.0% |
| ! | ACAATTCATAGTTCATAGTA+GGG | - | chr2_4:63939162-63939181 | None:intergenic | 25.0% |
| ! | AACAATTCATAGTTCATAGT+AGG | - | chr2_4:63939163-63939182 | None:intergenic | 25.0% |
| ! | TTGTTAAACTTGTAATATGC+AGG | + | chr2_4:63939241-63939260 | Msa0342020:intron | 25.0% |
| ! | AATCAAATACATGGTGATTT+GGG | - | chr2_4:63939405-63939424 | None:intergenic | 25.0% |
| ! | TAATCAAATACATGGTGATT+TGG | - | chr2_4:63939406-63939425 | None:intergenic | 25.0% |
| ! | CAAAGTATAGAACAAAGTTA+AGG | + | chr2_4:63939542-63939561 | Msa0342020:CDS | 25.0% |
| ! | ATTCATCAAATATAAAGTGG+AGG | - | chr2_4:63939701-63939720 | None:intergenic | 25.0% |
| !!! | ATAACAAATTTTTTGAGTGC+AGG | + | chr2_4:63939760-63939779 | Msa0342020:intron | 25.0% |
| !!! | TAACAAATTTTTTGAGTGCA+GGG | + | chr2_4:63939761-63939780 | Msa0342020:intron | 25.0% |
| CTAATACAATTCAGCAAGTA+GGG | + | chr2_4:63938743-63938762 | Msa0342020:CDS | 30.0% | |
| TTAAGTAATTCTTGAGCACA+TGG | + | chr2_4:63938960-63938979 | Msa0342020:intron | 30.0% | |
| ! | ACACTTTCAATTTGAAGTGT+CGG | - | chr2_4:63939008-63939027 | None:intergenic | 30.0% |
| CTGCAAACCATAAAAAAAGA+AGG | - | chr2_4:63939292-63939311 | None:intergenic | 30.0% | |
| ! | TTTTTGCCTTGTGTAACATT+TGG | + | chr2_4:63939326-63939345 | Msa0342020:CDS | 30.0% |
| ! | GTTAAGGAAGAAGTATGATT+TGG | + | chr2_4:63939558-63939577 | Msa0342020:CDS | 30.0% |
| TGAATTAAATACCAAGAGCA+GGG | - | chr2_4:63939678-63939697 | None:intergenic | 30.0% | |
| !! | TTAGACATGAATTGAGTTGA+GGG | - | chr2_4:63939850-63939869 | None:intergenic | 30.0% |
| CTAATACAATTCAGCAAGTA+GGG | + | chr2_4:63938743-63938762 | Msa0342020:CDS | 30.0% | |
| TTAAGTAATTCTTGAGCACA+TGG | + | chr2_4:63938960-63938979 | Msa0342020:intron | 30.0% | |
| ! | ACACTTTCAATTTGAAGTGT+CGG | - | chr2_4:63939008-63939027 | None:intergenic | 30.0% |
| CTGCAAACCATAAAAAAAGA+AGG | - | chr2_4:63939292-63939311 | None:intergenic | 30.0% | |
| ! | TTTTTGCCTTGTGTAACATT+TGG | + | chr2_4:63939326-63939345 | Msa0342020:CDS | 30.0% |
| ! | GTTAAGGAAGAAGTATGATT+TGG | + | chr2_4:63939558-63939577 | Msa0342020:CDS | 30.0% |
| TGAATTAAATACCAAGAGCA+GGG | - | chr2_4:63939678-63939697 | None:intergenic | 30.0% | |
| !! | TTAGACATGAATTGAGTTGA+GGG | - | chr2_4:63939850-63939869 | None:intergenic | 30.0% |
| GCTAATACAATTCAGCAAGT+AGG | + | chr2_4:63938742-63938761 | Msa0342020:CDS | 35.0% | |
| TGTCATGAGAACCAAACAAA+TGG | + | chr2_4:63938793-63938812 | Msa0342020:CDS | 35.0% | |
| ! | GGTGCTACATATATTTGTGA+CGG | - | chr2_4:63938987-63939006 | None:intergenic | 35.0% |
| ATCTGTCCAAATGTTACACA+AGG | - | chr2_4:63939335-63939354 | None:intergenic | 35.0% | |
| ATAATGTAAGGTTGCCATCT+TGG | + | chr2_4:63939463-63939482 | Msa0342020:intron | 35.0% | |
| !! | TTTGTGCACACAATGGATTA+TGG | + | chr2_4:63939516-63939535 | Msa0342020:CDS | 35.0% |
| !! | TTGTGCACACAATGGATTAT+GGG | + | chr2_4:63939517-63939536 | Msa0342020:CDS | 35.0% |
| ! | AAGGAAGAAGTATGATTTGG+TGG | + | chr2_4:63939561-63939580 | Msa0342020:CDS | 35.0% |
| TGAGAAATCACATCTGAATG+TGG | - | chr2_4:63939592-63939611 | None:intergenic | 35.0% | |
| TTCAGAGAGCTCAAAATTAG+AGG | + | chr2_4:63939646-63939665 | Msa0342020:CDS | 35.0% | |
| GTGAATTAAATACCAAGAGC+AGG | - | chr2_4:63939679-63939698 | None:intergenic | 35.0% | |
| ! | CTTAGACATGAATTGAGTTG+AGG | - | chr2_4:63939851-63939870 | None:intergenic | 35.0% |
| GCTAATACAATTCAGCAAGT+AGG | + | chr2_4:63938742-63938761 | Msa0342020:CDS | 35.0% | |
| TGTCATGAGAACCAAACAAA+TGG | + | chr2_4:63938793-63938812 | Msa0342020:CDS | 35.0% | |
| ! | GGTGCTACATATATTTGTGA+CGG | - | chr2_4:63938987-63939006 | None:intergenic | 35.0% |
| ATCTGTCCAAATGTTACACA+AGG | - | chr2_4:63939335-63939354 | None:intergenic | 35.0% | |
| ATAATGTAAGGTTGCCATCT+TGG | + | chr2_4:63939463-63939482 | Msa0342020:intron | 35.0% | |
| !! | TTTGTGCACACAATGGATTA+TGG | + | chr2_4:63939516-63939535 | Msa0342020:CDS | 35.0% |
| !! | TTGTGCACACAATGGATTAT+GGG | + | chr2_4:63939517-63939536 | Msa0342020:CDS | 35.0% |
| ! | AAGGAAGAAGTATGATTTGG+TGG | + | chr2_4:63939561-63939580 | Msa0342020:CDS | 35.0% |
| TGAGAAATCACATCTGAATG+TGG | - | chr2_4:63939592-63939611 | None:intergenic | 35.0% | |
| TTCAGAGAGCTCAAAATTAG+AGG | + | chr2_4:63939646-63939665 | Msa0342020:CDS | 35.0% | |
| GTGAATTAAATACCAAGAGC+AGG | - | chr2_4:63939679-63939698 | None:intergenic | 35.0% | |
| ! | CTTAGACATGAATTGAGTTG+AGG | - | chr2_4:63939851-63939870 | None:intergenic | 35.0% |
| TCAAATAGTCCAGTACTCCA+TGG | - | chr2_4:63938772-63938791 | None:intergenic | 40.0% | |
| ! | TGGACAGATAGCAGAAGTAT+TGG | + | chr2_4:63939346-63939365 | Msa0342020:CDS | 40.0% |
| !! | CAGATAGCAGAAGTATTGGA+TGG | + | chr2_4:63939350-63939369 | Msa0342020:CDS | 40.0% |
| !! | ATAGCAGAAGTATTGGATGG+TGG | + | chr2_4:63939353-63939372 | Msa0342020:CDS | 40.0% |
| GGTAAATGAAGCTTCCAAGA+TGG | - | chr2_4:63939480-63939499 | None:intergenic | 40.0% | |
| TCTTGACATAGGGAACAACA+AGG | - | chr2_4:63939625-63939644 | None:intergenic | 40.0% | |
| CTCTCTGAACTCTTGACATA+GGG | - | chr2_4:63939635-63939654 | None:intergenic | 40.0% | |
| !!! | CAAATTTTTTGAGTGCAGGG+TGG | + | chr2_4:63939764-63939783 | Msa0342020:intron | 40.0% |
| TCAAATAGTCCAGTACTCCA+TGG | - | chr2_4:63938772-63938791 | None:intergenic | 40.0% | |
| ! | TGGACAGATAGCAGAAGTAT+TGG | + | chr2_4:63939346-63939365 | Msa0342020:CDS | 40.0% |
| !! | CAGATAGCAGAAGTATTGGA+TGG | + | chr2_4:63939350-63939369 | Msa0342020:CDS | 40.0% |
| !! | ATAGCAGAAGTATTGGATGG+TGG | + | chr2_4:63939353-63939372 | Msa0342020:CDS | 40.0% |
| GGTAAATGAAGCTTCCAAGA+TGG | - | chr2_4:63939480-63939499 | None:intergenic | 40.0% | |
| TCTTGACATAGGGAACAACA+AGG | - | chr2_4:63939625-63939644 | None:intergenic | 40.0% | |
| CTCTCTGAACTCTTGACATA+GGG | - | chr2_4:63939635-63939654 | None:intergenic | 40.0% | |
| !!! | CAAATTTTTTGAGTGCAGGG+TGG | + | chr2_4:63939764-63939783 | Msa0342020:intron | 40.0% |
| TCATACCTTGAGCCAACAAC+AGG | - | chr2_4:63938721-63938740 | None:intergenic | 45.0% | |
| ! | TGGTGATTTGGGAGTTAGAG+AGG | - | chr2_4:63939394-63939413 | None:intergenic | 45.0% |
| ACAAAGCAGGCATCATTAGC+AGG | - | chr2_4:63939501-63939520 | None:intergenic | 45.0% | |
| ATCCATTGTGTGCACAAAGC+AGG | - | chr2_4:63939514-63939533 | None:intergenic | 45.0% | |
| GCTCTCTGAACTCTTGACAT+AGG | - | chr2_4:63939636-63939655 | None:intergenic | 45.0% | |
| !!! | TTTTTGAGTGCAGGGTGGAA+TGG | + | chr2_4:63939769-63939788 | Msa0342020:intron | 45.0% |
| GAGGGAGGATTGTTCAATGT+TGG | - | chr2_4:63939832-63939851 | None:intergenic | 45.0% | |
| !! | GACATGAATTGAGTTGAGGG+AGG | - | chr2_4:63939847-63939866 | None:intergenic | 45.0% |
| TCATACCTTGAGCCAACAAC+AGG | - | chr2_4:63938721-63938740 | None:intergenic | 45.0% | |
| ! | TGGTGATTTGGGAGTTAGAG+AGG | - | chr2_4:63939394-63939413 | None:intergenic | 45.0% |
| ACAAAGCAGGCATCATTAGC+AGG | - | chr2_4:63939501-63939520 | None:intergenic | 45.0% | |
| ATCCATTGTGTGCACAAAGC+AGG | - | chr2_4:63939514-63939533 | None:intergenic | 45.0% | |
| GCTCTCTGAACTCTTGACAT+AGG | - | chr2_4:63939636-63939655 | None:intergenic | 45.0% | |
| !!! | TTTTTGAGTGCAGGGTGGAA+TGG | + | chr2_4:63939769-63939788 | Msa0342020:intron | 45.0% |
| GAGGGAGGATTGTTCAATGT+TGG | - | chr2_4:63939832-63939851 | None:intergenic | 45.0% | |
| !! | GACATGAATTGAGTTGAGGG+AGG | - | chr2_4:63939847-63939866 | None:intergenic | 45.0% |
| TTGAGTCTTCTGCTCCTCAG+TGG | - | chr2_4:63938689-63938708 | None:intergenic | 50.0% | |
| CAACAGCAGGAACCTGTTGT+TGG | + | chr2_4:63938706-63938725 | Msa0342020:CDS | 50.0% | |
| !! | AGGAACCTGTTGTTGGCTCA+AGG | + | chr2_4:63938713-63938732 | Msa0342020:CDS | 50.0% |
| TTCAGCAAGTAGGGAGTCCA+TGG | + | chr2_4:63938752-63938771 | Msa0342020:CDS | 50.0% | |
| GTCAGACACAGATGACGTGT+TGG | - | chr2_4:63939033-63939052 | None:intergenic | 50.0% | |
| TGCCTGCTTTGTGCACACAA+TGG | + | chr2_4:63939509-63939528 | Msa0342020:CDS | 50.0% | |
| TTGAGTCTTCTGCTCCTCAG+TGG | - | chr2_4:63938689-63938708 | None:intergenic | 50.0% | |
| CAACAGCAGGAACCTGTTGT+TGG | + | chr2_4:63938706-63938725 | Msa0342020:CDS | 50.0% | |
| !! | AGGAACCTGTTGTTGGCTCA+AGG | + | chr2_4:63938713-63938732 | Msa0342020:CDS | 50.0% |
| TTCAGCAAGTAGGGAGTCCA+TGG | + | chr2_4:63938752-63938771 | Msa0342020:CDS | 50.0% | |
| GTCAGACACAGATGACGTGT+TGG | - | chr2_4:63939033-63939052 | None:intergenic | 50.0% | |
| TGCCTGCTTTGTGCACACAA+TGG | + | chr2_4:63939509-63939528 | Msa0342020:CDS | 50.0% | |
| GGAGCAGAAGACTCAACAGC+AGG | + | chr2_4:63938693-63938712 | Msa0342020:CDS | 55.0% | |
| GTAGGGAGTCCATGGAGTAC+TGG | + | chr2_4:63938760-63938779 | Msa0342020:CDS | 55.0% | |
| AGAGGACTTGACCCTGCTCT+TGG | + | chr2_4:63939664-63939683 | Msa0342020:CDS | 55.0% | |
| GGAGCAGAAGACTCAACAGC+AGG | + | chr2_4:63938693-63938712 | Msa0342020:CDS | 55.0% | |
| GTAGGGAGTCCATGGAGTAC+TGG | + | chr2_4:63938760-63938779 | Msa0342020:CDS | 55.0% | |
| AGAGGACTTGACCCTGCTCT+TGG | + | chr2_4:63939664-63939683 | Msa0342020:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 63938679 | 63939873 | 63938679 | ID=Msa0342020;Name=Msa0342020 |
| chr2_4 | mRNA | 63938679 | 63939873 | 63938679 | ID=Msa0342020-mRNA-1;Parent=Msa0342020;Name=Msa0342020-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|4|0|170 |
| chr2_4 | exon | 63938679 | 63938814 | 63938679 | ID=Msa0342020-mRNA-1:exon:20517;Parent=Msa0342020-mRNA-1 |
| chr2_4 | exon | 63939312 | 63939383 | 63939312 | ID=Msa0342020-mRNA-1:exon:20518;Parent=Msa0342020-mRNA-1 |
| chr2_4 | exon | 63939473 | 63939685 | 63939473 | ID=Msa0342020-mRNA-1:exon:20519;Parent=Msa0342020-mRNA-1 |
| chr2_4 | exon | 63939782 | 63939873 | 63939782 | ID=Msa0342020-mRNA-1:exon:20520;Parent=Msa0342020-mRNA-1 |
| chr2_4 | CDS | 63938679 | 63938814 | 63938679 | ID=Msa0342020-mRNA-1:cds;Parent=Msa0342020-mRNA-1 |
| chr2_4 | CDS | 63939312 | 63939383 | 63939312 | ID=Msa0342020-mRNA-1:cds;Parent=Msa0342020-mRNA-1 |
| chr2_4 | CDS | 63939473 | 63939685 | 63939473 | ID=Msa0342020-mRNA-1:cds;Parent=Msa0342020-mRNA-1 |
| chr2_4 | CDS | 63939782 | 63939873 | 63939782 | ID=Msa0342020-mRNA-1:cds;Parent=Msa0342020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
