AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861820 MtrunA17_Chr5g0442131 98.168 273 5 0 1 273 1 273 0.0 558
Msa0861820 MtrunA17_Chr3g0095111 81.319 273 51 0 1 273 1 273 6.23e-168 471
Msa0861820 MtrunA17_Chr5g0428161 90.984 122 4 1 152 273 2 116 1.62e-75 226
Msa0861820 MtrunA17_Chr5g0428171 92.063 63 5 0 28 90 1 63 6.22e-33 115
Msa0861820 MtrunA17_Chr5g0445291 92.500 40 3 0 81 120 1 40 2.99e-21 85.1
Msa0861820 MtrunA17_Chr5g0445301 92.683 41 3 0 233 273 7 47 1.73e-20 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861820 AT2G13360.3 80.952 273 52 0 1 273 1 273 1.33e-167 470
Msa0861820 AT2G13360.1 80.952 273 52 0 1 273 1 273 1.33e-167 470
Msa0861820 AT2G13360.2 80.952 273 52 0 1 273 1 273 1.33e-167 470

Find 72 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATACAAATTGCCTTTA+TGG 0.084246 5_4:+61286136 None:intergenic
GCTACAACTTGGGAACTTAT+TGG 0.227479 5_4:-61285316 Msa0861820:CDS
TTCAGTTGCTCTATGGTCTA+AGG 0.263982 5_4:-61285277 Msa0861820:CDS
CACTTAGATCTTTCTTTGAT+TGG 0.276960 5_4:-61285355 Msa0861820:CDS
TTCAAAGCTTCAATGGCTTT+AGG 0.328680 5_4:+61285389 None:intergenic
CCTTCCATTCAGTTGCTCTA+TGG 0.334757 5_4:-61285284 Msa0861820:CDS
TTTGTCAATGCTGTTATTGC+TGG 0.351983 5_4:+61286785 None:intergenic
TCGGACAATTCAGCTTGCTT+TGG 0.363589 5_4:-61286271 Msa0861820:CDS
AGAAACCATCTCTTTGTTCC+TGG 0.371920 5_4:-61286872 Msa0861820:CDS
CCAGTTGTGGGGATGAGAAA+TGG 0.387252 5_4:+61286713 None:intergenic
AGAAAGAGCTTTCTGAGAAC+TGG 0.405377 5_4:+61285445 None:intergenic
TGATTTCCGCATGGATGAAT+GGG 0.408622 5_4:-61285486 Msa0861820:CDS
ATTGCACGAATAACATGTTC+AGG 0.410447 5_4:+61286836 None:intergenic
TCGAAATTGGATAGGATGCT+TGG 0.412521 5_4:-61284589 Msa0861820:intron
CTTTCTCTTCCTACTGGAAT+GGG 0.414514 5_4:-61285428 Msa0861820:CDS
TTGATTTCCGCATGGATGAA+TGG 0.416031 5_4:-61285487 Msa0861820:CDS
ACAAAGAGATGGTTTCTTCC+AGG 0.418053 5_4:+61286878 None:intergenic
TGCAGATTTCAAAGCTTCAA+TGG 0.433654 5_4:+61285382 None:intergenic
CGAAATTGGATAGGATGCTT+GGG 0.436952 5_4:-61284588 Msa0861820:intron
AAAGCTCTTTCTCTTCCTAC+TGG 0.444514 5_4:-61285434 Msa0861820:CDS
AGATAAAACGCATACCATAA+AGG 0.445325 5_4:-61286150 Msa0861820:CDS
TTGTTTCAGGTACCGGTGCA+TGG 0.452534 5_4:-61286349 Msa0861820:intron
AACTGAATGGAAGGAGTGTA+TGG 0.455927 5_4:+61285293 None:intergenic
TGATGCTCTAGAATCAAAAC+TGG 0.458787 5_4:-61286177 Msa0861820:CDS
CCATTTCTCATCCCCACAAC+TGG 0.462759 5_4:-61286713 Msa0861820:intron
GTTGATGCGGTGTCTTCAAT+CGG 0.463044 5_4:-61285515 Msa0861820:CDS
AGATCTTTCTTTGATTGGAA+TGG 0.470224 5_4:-61285350 Msa0861820:CDS
TCTTTCTCTTCCTACTGGAA+TGG 0.479245 5_4:-61285429 Msa0861820:CDS
CAGTTGTGGGGATGAGAAAT+GGG 0.482700 5_4:+61286714 None:intergenic
GTTCACAATGAGACAACAAC+AGG 0.484768 5_4:-61286116 Msa0861820:CDS
GCATCAACAATAATGAGTGC+TGG 0.492711 5_4:+61285530 None:intergenic
TACTTGAAATGCTACAACTT+GGG 0.493378 5_4:-61285326 Msa0861820:CDS
TTGACAAATACTTTGTCTCC+CGG 0.495186 5_4:-61286317 Msa0861820:CDS
TCTAAGGGCAGCCCTTGACT+TGG 0.497508 5_4:-61285261 Msa0861820:CDS
AAAAGATACAGTACGATCCC+CGG 0.500419 5_4:+61286298 None:intergenic
TTGATGTTGTAGAAAGTGAA+TGG 0.508510 5_4:-61286217 Msa0861820:CDS
TGACAAATACTTTGTCTCCC+GGG 0.516801 5_4:-61286316 Msa0861820:CDS
CAATTATACAATACCAGTTG+TGG 0.523225 5_4:+61286700 None:intergenic
TCAGGGATGTTGGTAGGTCC+AGG 0.525986 5_4:+61286854 None:intergenic
TTACTTGAAATGCTACAACT+TGG 0.530532 5_4:-61285327 Msa0861820:CDS
AATTATACAATACCAGTTGT+GGG 0.531739 5_4:+61286701 None:intergenic
TGTTTCAGGTACCGGTGCAT+GGG 0.532953 5_4:-61286348 Msa0861820:intron
TGATGTTGTAGAAAGTGAAT+GGG 0.540744 5_4:-61286216 Msa0861820:CDS
TCAGTTGCTCTATGGTCTAA+GGG 0.543879 5_4:-61285276 Msa0861820:CDS
TAGACCATAGAGCAACTGAA+TGG 0.550731 5_4:+61285280 None:intergenic
TGTAGAAAGTGAATGGGGCC+AGG 0.551786 5_4:-61286210 Msa0861820:CDS
TTGCACGAATAACATGTTCA+GGG 0.553105 5_4:+61286837 None:intergenic
AATAACATGTTCAGGGATGT+TGG 0.562695 5_4:+61286844 None:intergenic
CCATAGAGCAACTGAATGGA+AGG 0.563284 5_4:+61285284 None:intergenic
CAATAATGAGTGCTGGGTGC+TGG 0.567172 5_4:+61285537 None:intergenic
ACTAAAGTGAGAAAACTCCT+TGG 0.581027 5_4:-61286077 Msa0861820:intron
CATCAACAATAATGAGTGCT+GGG 0.584013 5_4:+61285531 None:intergenic
GAGCATCAAGATCAGCACCC+TGG 0.596981 5_4:+61286192 None:intergenic
AAAGATACAGTACGATCCCC+GGG 0.598348 5_4:+61286299 None:intergenic
AGCACTCATTATTGTTGATG+CGG 0.602112 5_4:-61285528 Msa0861820:CDS
CGGAGCTCTTGATTTCCGCA+TGG 0.603311 5_4:-61285495 Msa0861820:CDS
ACATGTTCAGGGATGTTGGT+AGG 0.606345 5_4:+61286848 None:intergenic
GACAAATACTTTGTCTCCCG+GGG 0.610271 5_4:-61286315 Msa0861820:CDS
CAATGCACTCTCCCATGCAC+CGG 0.610924 5_4:+61286337 None:intergenic
ATATTCTATTGAAAGTTCAG+TGG 0.613476 5_4:-61284556 Msa0861820:CDS
CAACATCAACCTTAAAGTTG+AGG 0.623731 5_4:+61286231 None:intergenic
CATACAATTCCCATTCCAGT+AGG 0.632224 5_4:+61285419 None:intergenic
TAGGTCCAGGAACAAAGAGA+TGG 0.632427 5_4:+61286867 None:intergenic
GGAATGGGAATTGTATGTGC+AGG 0.648178 5_4:-61285413 Msa0861820:CDS
GTAGAAAGTGAATGGGGCCA+GGG 0.661044 5_4:-61286209 Msa0861820:CDS
GGATGAATGGGGTGTAGACG+TGG 0.667971 5_4:-61285474 Msa0861820:CDS
ATTATACAATACCAGTTGTG+GGG 0.675615 5_4:+61286702 None:intergenic
TTCACAATGAGACAACAACA+GGG 0.686862 5_4:-61286115 Msa0861820:CDS
GATTTCCGCATGGATGAATG+GGG 0.690927 5_4:-61285485 Msa0861820:CDS
GATGTTGTAGAAAGTGAATG+GGG 0.730361 5_4:-61286215 Msa0861820:CDS
CTACACCCCATTCATCCATG+CGG 0.753299 5_4:+61285480 None:intergenic
TCACAATGAGACAACAACAG+GGG 0.780788 5_4:-61286114 Msa0861820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTAATTAGAATTAG+TGG - chr5_4:61286741-61286760 Msa0861820:CDS 10.0%
!! TTCTTATAAAAAAAAATAAG+TGG + chr5_4:61286781-61286800 None:intergenic 10.0%
!! TATATATTAATTAGAATTAG+TGG - chr5_4:61286741-61286760 Msa0861820:CDS 10.0%
!! TTCTTATAAAAAAAAATAAG+TGG + chr5_4:61286781-61286800 None:intergenic 10.0%
!!! TTTTAAAATGTAAAATGACT+TGG - chr5_4:61286661-61286680 Msa0861820:intron 15.0%
!!! TTTTAAAATGTAAAATGACT+TGG - chr5_4:61286661-61286680 Msa0861820:intron 15.0%
!!! TTTTCAATTTCAATCTTAGT+AGG + chr5_4:61284922-61284941 None:intergenic 20.0%
!! AATAACAAACATAGTTAGAA+GGG + chr5_4:61285405-61285424 None:intergenic 20.0%
!! TGAAAGATATTTGAATTTGT+TGG - chr5_4:61285484-61285503 Msa0861820:CDS 20.0%
!! TGATTTCAAATGTTATATTC+CGG - chr5_4:61285726-61285745 Msa0861820:intron 20.0%
!! AAGTAAAAAAACATAACGTT+AGG + chr5_4:61285883-61285902 None:intergenic 20.0%
!!! GATTTGAAAATGTGATTTTA+AGG - chr5_4:61286223-61286242 Msa0861820:CDS 20.0%
!! ATAAAAAAAAATAAGTGGCA+GGG + chr5_4:61286776-61286795 None:intergenic 20.0%
!! TATAAAAAAAAATAAGTGGC+AGG + chr5_4:61286777-61286796 None:intergenic 20.0%
!!! TTTTTATAAGAACTGTTTGT+TGG - chr5_4:61286789-61286808 Msa0861820:CDS 20.0%
!!! TTTTCAATTTCAATCTTAGT+AGG + chr5_4:61284922-61284941 None:intergenic 20.0%
!! AATAACAAACATAGTTAGAA+GGG + chr5_4:61285405-61285424 None:intergenic 20.0%
!! TGAAAGATATTTGAATTTGT+TGG - chr5_4:61285484-61285503 Msa0861820:CDS 20.0%
!! TGATTTCAAATGTTATATTC+CGG - chr5_4:61285726-61285745 Msa0861820:intron 20.0%
!! AAGTAAAAAAACATAACGTT+AGG + chr5_4:61285883-61285902 None:intergenic 20.0%
!!! GATTTGAAAATGTGATTTTA+AGG - chr5_4:61286223-61286242 Msa0861820:CDS 20.0%
!! ATAAAAAAAAATAAGTGGCA+GGG + chr5_4:61286776-61286795 None:intergenic 20.0%
!! TATAAAAAAAAATAAGTGGC+AGG + chr5_4:61286777-61286796 None:intergenic 20.0%
!!! TTTTTATAAGAACTGTTTGT+TGG - chr5_4:61286789-61286808 Msa0861820:CDS 20.0%
!!! AAAATTTTCAAGACTACTTC+TGG - chr5_4:61284709-61284728 Msa0861820:intron 25.0%
! AATTATACAATACCAGTTGT+GGG + chr5_4:61284751-61284770 None:intergenic 25.0%
! ATAGAACATTCTAATGACTA+AGG + chr5_4:61284853-61284872 None:intergenic 25.0%
!! TCTTTTACCTTTTTACATTG+AGG - chr5_4:61284884-61284903 Msa0861820:intron 25.0%
! TTTAAGTCCTCAATGTAAAA+AGG + chr5_4:61284894-61284913 None:intergenic 25.0%
! TAACTTAAATTATAAGCGCA+GGG + chr5_4:61285069-61285088 None:intergenic 25.0%
! ATAACTTAAATTATAAGCGC+AGG + chr5_4:61285070-61285089 None:intergenic 25.0%
! AACAATACAAATTGCCTTTA+TGG + chr5_4:61285316-61285335 None:intergenic 25.0%
! GAATAACAAACATAGTTAGA+AGG + chr5_4:61285406-61285425 None:intergenic 25.0%
! ATCACAATACATGGAAAATT+TGG + chr5_4:61285547-61285566 None:intergenic 25.0%
! ACTAAAGATGCTATATATGT+AGG + chr5_4:61285672-61285691 None:intergenic 25.0%
! GATTTCAAATGTTATATTCC+GGG - chr5_4:61285727-61285746 Msa0861820:intron 25.0%
! ATTCCATTAAGCAAACATTA+AGG - chr5_4:61286383-61286402 Msa0861820:intron 25.0%
!!! CCTTAATGTTTTTGTTTTGT+TGG + chr5_4:61286561-61286580 None:intergenic 25.0%
! CCAACAAAACAAAAACATTA+AGG - chr5_4:61286558-61286577 Msa0861820:intron 25.0%
! TAAAAAAAAATAAGTGGCAG+GGG + chr5_4:61286775-61286794 None:intergenic 25.0%
! ATATTCTATTGAAAGTTCAG+TGG - chr5_4:61286893-61286912 Msa0861820:CDS 25.0%
!!! AAAATTTTCAAGACTACTTC+TGG - chr5_4:61284709-61284728 Msa0861820:intron 25.0%
! AATTATACAATACCAGTTGT+GGG + chr5_4:61284751-61284770 None:intergenic 25.0%
! ATAGAACATTCTAATGACTA+AGG + chr5_4:61284853-61284872 None:intergenic 25.0%
!! TCTTTTACCTTTTTACATTG+AGG - chr5_4:61284884-61284903 Msa0861820:intron 25.0%
! TTTAAGTCCTCAATGTAAAA+AGG + chr5_4:61284894-61284913 None:intergenic 25.0%
! TAACTTAAATTATAAGCGCA+GGG + chr5_4:61285069-61285088 None:intergenic 25.0%
! ATAACTTAAATTATAAGCGC+AGG + chr5_4:61285070-61285089 None:intergenic 25.0%
! AACAATACAAATTGCCTTTA+TGG + chr5_4:61285316-61285335 None:intergenic 25.0%
! GAATAACAAACATAGTTAGA+AGG + chr5_4:61285406-61285425 None:intergenic 25.0%
! ATCACAATACATGGAAAATT+TGG + chr5_4:61285547-61285566 None:intergenic 25.0%
! ACTAAAGATGCTATATATGT+AGG + chr5_4:61285672-61285691 None:intergenic 25.0%
! GATTTCAAATGTTATATTCC+GGG - chr5_4:61285727-61285746 Msa0861820:intron 25.0%
! ATTCCATTAAGCAAACATTA+AGG - chr5_4:61286383-61286402 Msa0861820:intron 25.0%
!!! CCTTAATGTTTTTGTTTTGT+TGG + chr5_4:61286561-61286580 None:intergenic 25.0%
! CCAACAAAACAAAAACATTA+AGG - chr5_4:61286558-61286577 Msa0861820:intron 25.0%
! TAAAAAAAAATAAGTGGCAG+GGG + chr5_4:61286775-61286794 None:intergenic 25.0%
! ATATTCTATTGAAAGTTCAG+TGG - chr5_4:61286893-61286912 Msa0861820:CDS 25.0%
ATTATACAATACCAGTTGTG+GGG + chr5_4:61284750-61284769 None:intergenic 30.0%
CAATTATACAATACCAGTTG+TGG + chr5_4:61284752-61284771 None:intergenic 30.0%
CACAACTGGTATTGTATAAT+TGG - chr5_4:61284750-61284769 Msa0861820:intron 30.0%
TCAATAGAAATTGTTCGAGA+CGG + chr5_4:61284962-61284981 None:intergenic 30.0%
TATGATCCTTCATTTGTTTC+AGG - chr5_4:61285087-61285106 Msa0861820:intron 30.0%
! CGTACTGTATCTTTTCTAAT+CGG - chr5_4:61285159-61285178 Msa0861820:intron 30.0%
TTGATGTTGTAGAAAGTGAA+TGG - chr5_4:61285232-61285251 Msa0861820:intron 30.0%
TGATGTTGTAGAAAGTGAAT+GGG - chr5_4:61285233-61285252 Msa0861820:intron 30.0%
AGATAAAACGCATACCATAA+AGG - chr5_4:61285299-61285318 Msa0861820:CDS 30.0%
CAACAAGATATCACAATACA+TGG + chr5_4:61285556-61285575 None:intergenic 30.0%
TTGTGATATCTTGTTGATCA+AGG - chr5_4:61285560-61285579 Msa0861820:intron 30.0%
! CAACAAGGTATCACAAATTT+AGG + chr5_4:61285630-61285649 None:intergenic 30.0%
CAAGTCAAACAAATGTAATG+AGG + chr5_4:61285753-61285772 None:intergenic 30.0%
CACTTAGATCTTTCTTTGAT+TGG - chr5_4:61286094-61286113 Msa0861820:CDS 30.0%
AGATCTTTCTTTGATTGGAA+TGG - chr5_4:61286099-61286118 Msa0861820:CDS 30.0%
TTACTTGAAATGCTACAACT+TGG - chr5_4:61286122-61286141 Msa0861820:CDS 30.0%
TACTTGAAATGCTACAACTT+GGG - chr5_4:61286123-61286142 Msa0861820:CDS 30.0%
TCACCTTAATGTTTGCTTAA+TGG + chr5_4:61286389-61286408 None:intergenic 30.0%
! AAGAACTGTTTGTTGGTTAT+CGG - chr5_4:61286796-61286815 Msa0861820:CDS 30.0%
AATTTCGAAAGAATAGGCAA+GGG + chr5_4:61286848-61286867 None:intergenic 30.0%
CTATCCAATTTCGAAAGAAT+AGG + chr5_4:61286854-61286873 None:intergenic 30.0%
CTATTCTTTCGAAATTGGAT+AGG - chr5_4:61286852-61286871 Msa0861820:CDS 30.0%
ATTATACAATACCAGTTGTG+GGG + chr5_4:61284750-61284769 None:intergenic 30.0%
CAATTATACAATACCAGTTG+TGG + chr5_4:61284752-61284771 None:intergenic 30.0%
CACAACTGGTATTGTATAAT+TGG - chr5_4:61284750-61284769 Msa0861820:intron 30.0%
TCAATAGAAATTGTTCGAGA+CGG + chr5_4:61284962-61284981 None:intergenic 30.0%
TATGATCCTTCATTTGTTTC+AGG - chr5_4:61285087-61285106 Msa0861820:intron 30.0%
! CGTACTGTATCTTTTCTAAT+CGG - chr5_4:61285159-61285178 Msa0861820:intron 30.0%
TTGATGTTGTAGAAAGTGAA+TGG - chr5_4:61285232-61285251 Msa0861820:intron 30.0%
TGATGTTGTAGAAAGTGAAT+GGG - chr5_4:61285233-61285252 Msa0861820:intron 30.0%
AGATAAAACGCATACCATAA+AGG - chr5_4:61285299-61285318 Msa0861820:CDS 30.0%
CAACAAGATATCACAATACA+TGG + chr5_4:61285556-61285575 None:intergenic 30.0%
TTGTGATATCTTGTTGATCA+AGG - chr5_4:61285560-61285579 Msa0861820:intron 30.0%
! CAACAAGGTATCACAAATTT+AGG + chr5_4:61285630-61285649 None:intergenic 30.0%
CAAGTCAAACAAATGTAATG+AGG + chr5_4:61285753-61285772 None:intergenic 30.0%
CACTTAGATCTTTCTTTGAT+TGG - chr5_4:61286094-61286113 Msa0861820:CDS 30.0%
AGATCTTTCTTTGATTGGAA+TGG - chr5_4:61286099-61286118 Msa0861820:CDS 30.0%
TTACTTGAAATGCTACAACT+TGG - chr5_4:61286122-61286141 Msa0861820:CDS 30.0%
TACTTGAAATGCTACAACTT+GGG - chr5_4:61286123-61286142 Msa0861820:CDS 30.0%
TCACCTTAATGTTTGCTTAA+TGG + chr5_4:61286389-61286408 None:intergenic 30.0%
! AAGAACTGTTTGTTGGTTAT+CGG - chr5_4:61286796-61286815 Msa0861820:CDS 30.0%
AATTTCGAAAGAATAGGCAA+GGG + chr5_4:61286848-61286867 None:intergenic 30.0%
CTATCCAATTTCGAAAGAAT+AGG + chr5_4:61286854-61286873 None:intergenic 30.0%
CTATTCTTTCGAAATTGGAT+AGG - chr5_4:61286852-61286871 Msa0861820:CDS 30.0%
AATAACATGTTCAGGGATGT+TGG + chr5_4:61284608-61284627 None:intergenic 35.0%
TTGCACGAATAACATGTTCA+GGG + chr5_4:61284615-61284634 None:intergenic 35.0%
ATTGCACGAATAACATGTTC+AGG + chr5_4:61284616-61284635 None:intergenic 35.0%
TTTGTCAATGCTGTTATTGC+TGG + chr5_4:61284667-61284686 None:intergenic 35.0%
CAATAGAAATTGTTCGAGAC+GGG + chr5_4:61284961-61284980 None:intergenic 35.0%
TTGACAAATACTTTGTCTCC+CGG - chr5_4:61285132-61285151 Msa0861820:intron 35.0%
ACAAAAACGCCTCAACTTTA+AGG - chr5_4:61285209-61285228 Msa0861820:intron 35.0%
CAACATCAACCTTAAAGTTG+AGG + chr5_4:61285221-61285240 None:intergenic 35.0%
GATGTTGTAGAAAGTGAATG+GGG - chr5_4:61285234-61285253 Msa0861820:intron 35.0%
!! TGATGCTCTAGAATCAAAAC+TGG - chr5_4:61285272-61285291 Msa0861820:CDS 35.0%
TTCACAATGAGACAACAACA+GGG - chr5_4:61285334-61285353 Msa0861820:CDS 35.0%
ACTAAAGTGAGAAAACTCCT+TGG - chr5_4:61285372-61285391 Msa0861820:CDS 35.0%
TGACATACATGTGCTTTCTT+AGG - chr5_4:61285817-61285836 Msa0861820:intron 35.0%
CATCAACAATAATGAGTGCT+GGG + chr5_4:61285921-61285940 None:intergenic 35.0%
AGCACTCATTATTGTTGATG+CGG - chr5_4:61285921-61285940 Msa0861820:intron 35.0%
TTCAAAGCTTCAATGGCTTT+AGG + chr5_4:61286063-61286082 None:intergenic 35.0%
TGCAGATTTCAAAGCTTCAA+TGG + chr5_4:61286070-61286089 None:intergenic 35.0%
TTCCTCAAAAACCAAGTCAA+GGG + chr5_4:61286202-61286221 None:intergenic 35.0%
AACATTAAGGTGACACAAAC+AGG - chr5_4:61286396-61286415 Msa0861820:intron 35.0%
AGTCAAACTCTGAATTGTCA+AGG - chr5_4:61286504-61286523 Msa0861820:intron 35.0%
!!! TTTTGTTGGTCTTAATCACC+CGG + chr5_4:61286547-61286566 None:intergenic 35.0%
!! TGTTGGTTATCGGCATTTTA+AGG - chr5_4:61286806-61286825 Msa0861820:CDS 35.0%
! GTTGGTTATCGGCATTTTAA+GGG - chr5_4:61286807-61286826 Msa0861820:CDS 35.0%
! TTGGTTATCGGCATTTTAAG+GGG - chr5_4:61286808-61286827 Msa0861820:CDS 35.0%
CAATTTCGAAAGAATAGGCA+AGG + chr5_4:61286849-61286868 None:intergenic 35.0%
CTTGCCTATTCTTTCGAAAT+TGG - chr5_4:61286847-61286866 Msa0861820:CDS 35.0%
AATAACATGTTCAGGGATGT+TGG + chr5_4:61284608-61284627 None:intergenic 35.0%
TTGCACGAATAACATGTTCA+GGG + chr5_4:61284615-61284634 None:intergenic 35.0%
ATTGCACGAATAACATGTTC+AGG + chr5_4:61284616-61284635 None:intergenic 35.0%
TTTGTCAATGCTGTTATTGC+TGG + chr5_4:61284667-61284686 None:intergenic 35.0%
CAATAGAAATTGTTCGAGAC+GGG + chr5_4:61284961-61284980 None:intergenic 35.0%
TTGACAAATACTTTGTCTCC+CGG - chr5_4:61285132-61285151 Msa0861820:intron 35.0%
ACAAAAACGCCTCAACTTTA+AGG - chr5_4:61285209-61285228 Msa0861820:intron 35.0%
CAACATCAACCTTAAAGTTG+AGG + chr5_4:61285221-61285240 None:intergenic 35.0%
GATGTTGTAGAAAGTGAATG+GGG - chr5_4:61285234-61285253 Msa0861820:intron 35.0%
!! TGATGCTCTAGAATCAAAAC+TGG - chr5_4:61285272-61285291 Msa0861820:CDS 35.0%
TTCACAATGAGACAACAACA+GGG - chr5_4:61285334-61285353 Msa0861820:CDS 35.0%
ACTAAAGTGAGAAAACTCCT+TGG - chr5_4:61285372-61285391 Msa0861820:CDS 35.0%
TGACATACATGTGCTTTCTT+AGG - chr5_4:61285817-61285836 Msa0861820:intron 35.0%
CATCAACAATAATGAGTGCT+GGG + chr5_4:61285921-61285940 None:intergenic 35.0%
AGCACTCATTATTGTTGATG+CGG - chr5_4:61285921-61285940 Msa0861820:intron 35.0%
TTCAAAGCTTCAATGGCTTT+AGG + chr5_4:61286063-61286082 None:intergenic 35.0%
TGCAGATTTCAAAGCTTCAA+TGG + chr5_4:61286070-61286089 None:intergenic 35.0%
TTCCTCAAAAACCAAGTCAA+GGG + chr5_4:61286202-61286221 None:intergenic 35.0%
AACATTAAGGTGACACAAAC+AGG - chr5_4:61286396-61286415 Msa0861820:intron 35.0%
AGTCAAACTCTGAATTGTCA+AGG - chr5_4:61286504-61286523 Msa0861820:intron 35.0%
!!! TTTTGTTGGTCTTAATCACC+CGG + chr5_4:61286547-61286566 None:intergenic 35.0%
!! TGTTGGTTATCGGCATTTTA+AGG - chr5_4:61286806-61286825 Msa0861820:CDS 35.0%
! GTTGGTTATCGGCATTTTAA+GGG - chr5_4:61286807-61286826 Msa0861820:CDS 35.0%
! TTGGTTATCGGCATTTTAAG+GGG - chr5_4:61286808-61286827 Msa0861820:CDS 35.0%
CAATTTCGAAAGAATAGGCA+AGG + chr5_4:61286849-61286868 None:intergenic 35.0%
CTTGCCTATTCTTTCGAAAT+TGG - chr5_4:61286847-61286866 Msa0861820:CDS 35.0%
! ATGGATTTTGCTTATGGACC+TGG - chr5_4:61284553-61284572 Msa0861820:CDS 40.0%
ACAAAGAGATGGTTTCTTCC+AGG + chr5_4:61284574-61284593 None:intergenic 40.0%
AGAAACCATCTCTTTGTTCC+TGG - chr5_4:61284577-61284596 Msa0861820:CDS 40.0%
! TATTGACCGACTCAAAGTCA+GGG - chr5_4:61284976-61284995 Msa0861820:intron 40.0%
! CCTTCATTTGTTTCAGGTAC+CGG - chr5_4:61285093-61285112 Msa0861820:intron 40.0%
TGACAAATACTTTGTCTCCC+GGG - chr5_4:61285133-61285152 Msa0861820:intron 40.0%
AAAAGATACAGTACGATCCC+CGG + chr5_4:61285154-61285173 None:intergenic 40.0%
GTTCACAATGAGACAACAAC+AGG - chr5_4:61285333-61285352 Msa0861820:CDS 40.0%
TCACAATGAGACAACAACAG+GGG - chr5_4:61285335-61285354 Msa0861820:CDS 40.0%
CACAAACGCACATGACAATA+AGG + chr5_4:61285604-61285623 None:intergenic 40.0%
TCATGTGCACACAATCAACA+AGG + chr5_4:61285645-61285664 None:intergenic 40.0%
CAAACAAATGTAATGAGGCC+CGG + chr5_4:61285748-61285767 None:intergenic 40.0%
GCATCAACAATAATGAGTGC+TGG + chr5_4:61285922-61285941 None:intergenic 40.0%
TTGATTTCCGCATGGATGAA+TGG - chr5_4:61285962-61285981 Msa0861820:intron 40.0%
TGATTTCCGCATGGATGAAT+GGG - chr5_4:61285963-61285982 Msa0861820:intron 40.0%
! AGAAAGAGCTTTCTGAGAAC+TGG + chr5_4:61286007-61286026 None:intergenic 40.0%
AAAGCTCTTTCTCTTCCTAC+TGG - chr5_4:61286015-61286034 Msa0861820:intron 40.0%
TCTTTCTCTTCCTACTGGAA+TGG - chr5_4:61286020-61286039 Msa0861820:intron 40.0%
CTTTCTCTTCCTACTGGAAT+GGG - chr5_4:61286021-61286040 Msa0861820:intron 40.0%
CATACAATTCCCATTCCAGT+AGG + chr5_4:61286033-61286052 None:intergenic 40.0%
GCTACAACTTGGGAACTTAT+TGG - chr5_4:61286133-61286152 Msa0861820:CDS 40.0%
! AACTGAATGGAAGGAGTGTA+TGG + chr5_4:61286159-61286178 None:intergenic 40.0%
TAGACCATAGAGCAACTGAA+TGG + chr5_4:61286172-61286191 None:intergenic 40.0%
TTCAGTTGCTCTATGGTCTA+AGG - chr5_4:61286172-61286191 Msa0861820:CDS 40.0%
TCAGTTGCTCTATGGTCTAA+GGG - chr5_4:61286173-61286192 Msa0861820:CDS 40.0%
CTTCCTCAAAAACCAAGTCA+AGG + chr5_4:61286203-61286222 None:intergenic 40.0%
!!! CTTGACTTGGTTTTTGAGGA+AGG - chr5_4:61286201-61286220 Msa0861820:CDS 40.0%
!!! GGTCATTTTTACCTCAGAAC+CGG - chr5_4:61286525-61286544 Msa0861820:intron 40.0%
!!! GTCATTTTTACCTCAGAACC+GGG - chr5_4:61286526-61286545 Msa0861820:intron 40.0%
TCGAAATTGGATAGGATGCT+TGG - chr5_4:61286860-61286879 Msa0861820:CDS 40.0%
CGAAATTGGATAGGATGCTT+GGG - chr5_4:61286861-61286880 Msa0861820:CDS 40.0%
! ATGGATTTTGCTTATGGACC+TGG - chr5_4:61284553-61284572 Msa0861820:CDS 40.0%
ACAAAGAGATGGTTTCTTCC+AGG + chr5_4:61284574-61284593 None:intergenic 40.0%
AGAAACCATCTCTTTGTTCC+TGG - chr5_4:61284577-61284596 Msa0861820:CDS 40.0%
! TATTGACCGACTCAAAGTCA+GGG - chr5_4:61284976-61284995 Msa0861820:intron 40.0%
! CCTTCATTTGTTTCAGGTAC+CGG - chr5_4:61285093-61285112 Msa0861820:intron 40.0%
TGACAAATACTTTGTCTCCC+GGG - chr5_4:61285133-61285152 Msa0861820:intron 40.0%
AAAAGATACAGTACGATCCC+CGG + chr5_4:61285154-61285173 None:intergenic 40.0%
GTTCACAATGAGACAACAAC+AGG - chr5_4:61285333-61285352 Msa0861820:CDS 40.0%
TCACAATGAGACAACAACAG+GGG - chr5_4:61285335-61285354 Msa0861820:CDS 40.0%
CACAAACGCACATGACAATA+AGG + chr5_4:61285604-61285623 None:intergenic 40.0%
TCATGTGCACACAATCAACA+AGG + chr5_4:61285645-61285664 None:intergenic 40.0%
CAAACAAATGTAATGAGGCC+CGG + chr5_4:61285748-61285767 None:intergenic 40.0%
GCATCAACAATAATGAGTGC+TGG + chr5_4:61285922-61285941 None:intergenic 40.0%
TTGATTTCCGCATGGATGAA+TGG - chr5_4:61285962-61285981 Msa0861820:intron 40.0%
TGATTTCCGCATGGATGAAT+GGG - chr5_4:61285963-61285982 Msa0861820:intron 40.0%
! AGAAAGAGCTTTCTGAGAAC+TGG + chr5_4:61286007-61286026 None:intergenic 40.0%
AAAGCTCTTTCTCTTCCTAC+TGG - chr5_4:61286015-61286034 Msa0861820:intron 40.0%
TCTTTCTCTTCCTACTGGAA+TGG - chr5_4:61286020-61286039 Msa0861820:intron 40.0%
CTTTCTCTTCCTACTGGAAT+GGG - chr5_4:61286021-61286040 Msa0861820:intron 40.0%
CATACAATTCCCATTCCAGT+AGG + chr5_4:61286033-61286052 None:intergenic 40.0%
GCTACAACTTGGGAACTTAT+TGG - chr5_4:61286133-61286152 Msa0861820:CDS 40.0%
! AACTGAATGGAAGGAGTGTA+TGG + chr5_4:61286159-61286178 None:intergenic 40.0%
TAGACCATAGAGCAACTGAA+TGG + chr5_4:61286172-61286191 None:intergenic 40.0%
TTCAGTTGCTCTATGGTCTA+AGG - chr5_4:61286172-61286191 Msa0861820:CDS 40.0%
TCAGTTGCTCTATGGTCTAA+GGG - chr5_4:61286173-61286192 Msa0861820:CDS 40.0%
CTTCCTCAAAAACCAAGTCA+AGG + chr5_4:61286203-61286222 None:intergenic 40.0%
!!! CTTGACTTGGTTTTTGAGGA+AGG - chr5_4:61286201-61286220 Msa0861820:CDS 40.0%
!!! GGTCATTTTTACCTCAGAAC+CGG - chr5_4:61286525-61286544 Msa0861820:intron 40.0%
!!! GTCATTTTTACCTCAGAACC+GGG - chr5_4:61286526-61286545 Msa0861820:intron 40.0%
TCGAAATTGGATAGGATGCT+TGG - chr5_4:61286860-61286879 Msa0861820:CDS 40.0%
CGAAATTGGATAGGATGCTT+GGG - chr5_4:61286861-61286880 Msa0861820:CDS 40.0%
TAGGTCCAGGAACAAAGAGA+TGG + chr5_4:61284585-61284604 None:intergenic 45.0%
ACATGTTCAGGGATGTTGGT+AGG + chr5_4:61284604-61284623 None:intergenic 45.0%
CAGTTGTGGGGATGAGAAAT+GGG + chr5_4:61284738-61284757 None:intergenic 45.0%
! CTATTGACCGACTCAAAGTC+AGG - chr5_4:61284975-61284994 Msa0861820:intron 45.0%
CCGGTACCTGAAACAAATGA+AGG + chr5_4:61285096-61285115 None:intergenic 45.0%
GACAAATACTTTGTCTCCCG+GGG - chr5_4:61285134-61285153 Msa0861820:intron 45.0%
AAAGATACAGTACGATCCCC+GGG + chr5_4:61285153-61285172 None:intergenic 45.0%
! TCGGACAATTCAGCTTGCTT+TGG - chr5_4:61285178-61285197 Msa0861820:intron 45.0%
GTTGATGCGGTGTCTTCAAT+CGG - chr5_4:61285934-61285953 Msa0861820:intron 45.0%
GATTTCCGCATGGATGAATG+GGG - chr5_4:61285964-61285983 Msa0861820:intron 45.0%
GGAATGGGAATTGTATGTGC+AGG - chr5_4:61286036-61286055 Msa0861820:intron 45.0%
CCATAGAGCAACTGAATGGA+AGG + chr5_4:61286168-61286187 None:intergenic 45.0%
CCTTCCATTCAGTTGCTCTA+TGG - chr5_4:61286165-61286184 Msa0861820:CDS 45.0%
!!! AGCCCTTGACTTGGTTTTTG+AGG - chr5_4:61286197-61286216 Msa0861820:CDS 45.0%
TAGGTCCAGGAACAAAGAGA+TGG + chr5_4:61284585-61284604 None:intergenic 45.0%
ACATGTTCAGGGATGTTGGT+AGG + chr5_4:61284604-61284623 None:intergenic 45.0%
CAGTTGTGGGGATGAGAAAT+GGG + chr5_4:61284738-61284757 None:intergenic 45.0%
! CTATTGACCGACTCAAAGTC+AGG - chr5_4:61284975-61284994 Msa0861820:intron 45.0%
CCGGTACCTGAAACAAATGA+AGG + chr5_4:61285096-61285115 None:intergenic 45.0%
GACAAATACTTTGTCTCCCG+GGG - chr5_4:61285134-61285153 Msa0861820:intron 45.0%
AAAGATACAGTACGATCCCC+GGG + chr5_4:61285153-61285172 None:intergenic 45.0%
! TCGGACAATTCAGCTTGCTT+TGG - chr5_4:61285178-61285197 Msa0861820:intron 45.0%
GTTGATGCGGTGTCTTCAAT+CGG - chr5_4:61285934-61285953 Msa0861820:intron 45.0%
GATTTCCGCATGGATGAATG+GGG - chr5_4:61285964-61285983 Msa0861820:intron 45.0%
GGAATGGGAATTGTATGTGC+AGG - chr5_4:61286036-61286055 Msa0861820:intron 45.0%
CCATAGAGCAACTGAATGGA+AGG + chr5_4:61286168-61286187 None:intergenic 45.0%
CCTTCCATTCAGTTGCTCTA+TGG - chr5_4:61286165-61286184 Msa0861820:CDS 45.0%
!!! AGCCCTTGACTTGGTTTTTG+AGG - chr5_4:61286197-61286216 Msa0861820:CDS 45.0%
CCAGTTGTGGGGATGAGAAA+TGG + chr5_4:61284739-61284758 None:intergenic 50.0%
CCATTTCTCATCCCCACAAC+TGG - chr5_4:61284736-61284755 Msa0861820:intron 50.0%
CTAGCTCCCTGACTTTGAGT+CGG + chr5_4:61284985-61285004 None:intergenic 50.0%
!! TTGTTTCAGGTACCGGTGCA+TGG - chr5_4:61285100-61285119 Msa0861820:intron 50.0%
!! TGTTTCAGGTACCGGTGCAT+GGG - chr5_4:61285101-61285120 Msa0861820:intron 50.0%
TGTAGAAAGTGAATGGGGCC+AGG - chr5_4:61285239-61285258 Msa0861820:CDS 50.0%
GTAGAAAGTGAATGGGGCCA+GGG - chr5_4:61285240-61285259 Msa0861820:CDS 50.0%
GTTAGAAGGGATGCTCACCA+AGG + chr5_4:61285392-61285411 None:intergenic 50.0%
!! CAATAATGAGTGCTGGGTGC+TGG + chr5_4:61285915-61285934 None:intergenic 50.0%
CTACACCCCATTCATCCATG+CGG + chr5_4:61285972-61285991 None:intergenic 50.0%
GTCTTAATCACCCGGTTCTG+AGG + chr5_4:61286539-61286558 None:intergenic 50.0%
CCAGTTGTGGGGATGAGAAA+TGG + chr5_4:61284739-61284758 None:intergenic 50.0%
CCATTTCTCATCCCCACAAC+TGG - chr5_4:61284736-61284755 Msa0861820:intron 50.0%
CTAGCTCCCTGACTTTGAGT+CGG + chr5_4:61284985-61285004 None:intergenic 50.0%
!! TTGTTTCAGGTACCGGTGCA+TGG - chr5_4:61285100-61285119 Msa0861820:intron 50.0%
!! TGTTTCAGGTACCGGTGCAT+GGG - chr5_4:61285101-61285120 Msa0861820:intron 50.0%
TGTAGAAAGTGAATGGGGCC+AGG - chr5_4:61285239-61285258 Msa0861820:CDS 50.0%
GTAGAAAGTGAATGGGGCCA+GGG - chr5_4:61285240-61285259 Msa0861820:CDS 50.0%
GTTAGAAGGGATGCTCACCA+AGG + chr5_4:61285392-61285411 None:intergenic 50.0%
!! CAATAATGAGTGCTGGGTGC+TGG + chr5_4:61285915-61285934 None:intergenic 50.0%
CTACACCCCATTCATCCATG+CGG + chr5_4:61285972-61285991 None:intergenic 50.0%
GTCTTAATCACCCGGTTCTG+AGG + chr5_4:61286539-61286558 None:intergenic 50.0%
! TCAGGGATGTTGGTAGGTCC+AGG + chr5_4:61284598-61284617 None:intergenic 55.0%
CAATGCACTCTCCCATGCAC+CGG + chr5_4:61285115-61285134 None:intergenic 55.0%
GAGCATCAAGATCAGCACCC+TGG + chr5_4:61285260-61285279 None:intergenic 55.0%
CGGAGCTCTTGATTTCCGCA+TGG - chr5_4:61285954-61285973 Msa0861820:intron 55.0%
GGATGAATGGGGTGTAGACG+TGG - chr5_4:61285975-61285994 Msa0861820:intron 55.0%
TCTAAGGGCAGCCCTTGACT+TGG - chr5_4:61286188-61286207 Msa0861820:CDS 55.0%
! TCAGGGATGTTGGTAGGTCC+AGG + chr5_4:61284598-61284617 None:intergenic 55.0%
CAATGCACTCTCCCATGCAC+CGG + chr5_4:61285115-61285134 None:intergenic 55.0%
GAGCATCAAGATCAGCACCC+TGG + chr5_4:61285260-61285279 None:intergenic 55.0%
CGGAGCTCTTGATTTCCGCA+TGG - chr5_4:61285954-61285973 Msa0861820:intron 55.0%
GGATGAATGGGGTGTAGACG+TGG - chr5_4:61285975-61285994 Msa0861820:intron 55.0%
TCTAAGGGCAGCCCTTGACT+TGG - chr5_4:61286188-61286207 Msa0861820:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 61284553 61286918 61284553 ID=Msa0861820;Name=Msa0861820
chr5_4 mRNA 61284553 61286918 61284553 ID=Msa0861820-mRNA-1;Parent=Msa0861820;Name=Msa0861820-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.75|1|1|4|0|287
chr5_4 exon 61286714 61286918 61286714 ID=Msa0861820-mRNA-1:exon:18971;Parent=Msa0861820-mRNA-1
chr5_4 exon 61286078 61286362 61286078 ID=Msa0861820-mRNA-1:exon:18970;Parent=Msa0861820-mRNA-1
chr5_4 exon 61285238 61285566 61285238 ID=Msa0861820-mRNA-1:exon:18969;Parent=Msa0861820-mRNA-1
chr5_4 exon 61284553 61284597 61284553 ID=Msa0861820-mRNA-1:exon:18968;Parent=Msa0861820-mRNA-1
chr5_4 CDS 61286714 61286918 61286714 ID=Msa0861820-mRNA-1:cds;Parent=Msa0861820-mRNA-1
chr5_4 CDS 61286078 61286362 61286078 ID=Msa0861820-mRNA-1:cds;Parent=Msa0861820-mRNA-1
chr5_4 CDS 61285238 61285566 61285238 ID=Msa0861820-mRNA-1:cds;Parent=Msa0861820-mRNA-1
chr5_4 CDS 61284553 61284597 61284553 ID=Msa0861820-mRNA-1:cds;Parent=Msa0861820-mRNA-1
Gene Sequence

>Msa0861820

ATGGATTTTGCTTATGGACCTGGAAGAAACCATCTCTTTGTTCCTGGACCTACCAACATCCCTGAACATGTTATTCGTGCAATGAACAGAAACAATGAAAATCATCGTACTCCAGCAATAACAGCATTGACAAAAACATTACTTGATGATGTCAAGAAAATTTTCAAGACTACTTCTGGAATCCCATTTCTCATCCCCACAACTGGTACCGGTGCATGGGAGAGTGCATTGACAAATACTTTGTCTCCCGGGGATCGTACTGTATCTTTTCTAATCGGACAATTCAGCTTGCTTTGGATTGAACAACAAAAACGCCTCAACTTTAAGGTTGATGTTGTAGAAAGTGAATGGGGCCAGGGTGCTGATCTTGATGCTCTAGAATCAAAACTGGCTTCAGATAAAACGCATACCATAAAGGCAATTTGTATTGTTCACAATGAGACAACAACAGGGGTCACAAATGACTTGACTAAAGTGAGAAAACTCCTTGACAAGTACCAGCACCCAGCACTCATTATTGTTGATGCGGTGTCTTCAATCGGAGCTCTTGATTTCCGCATGGATGAATGGGGTGTAGACGTGGTAGTGACCAGTTCTCAGAAAGCTCTTTCTCTTCCTACTGGAATGGGAATTGTATGTGCAGGACCTAAAGCCATTGAAGCTTTGAAATCTGCAAGATCACTTAGATCTTTCTTTGATTGGAATGGTTACTTGAAATGCTACAACTTGGGAACTTATTGGCCATACACTCCTTCCATTCAGTTGCTCTATGGTCTAAGGGCAGCCCTTGACTTGGTTTTTGAGGAAGGATTTGAAAATGATGCTTGGGATATTCTTCATATTCTATTGAAAGTTCAGTGGTAA

Protein sequence

>Msa0861820

MDFAYGPGRNHLFVPGPTNIPEHVIRAMNRNNENHRTPAITALTKTLLDDVKKIFKTTSGIPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIEQQKRLNFKVDVVESEWGQGADLDALESKLASDKTHTIKAICIVHNETTTGVTNDLTKVRKLLDKYQHPALIIVDAVSSIGALDFRMDEWGVDVVVTSSQKALSLPTGMGIVCAGPKAIEALKSARSLRSFFDWNGYLKCYNLGTYWPYTPSIQLLYGLRAALDLVFEEGFENDAWDILHILLKVQW*