Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345260 | XP_003598092.2 | 99.454 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 1.72e-128 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345260 | G7J0A0 | 99.454 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 8.22e-129 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0345260 | Msa0391940 | 0.989899 | 3.797524e-180 | -8.615850e-47 |
| Msa0345260 | Msa0392710 | 0.851541 | 8.297138e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345260 | MtrunA17_Chr3g0077951 | 100.000 | 156 | 0 | 0 | 28 | 183 | 24 | 179 | 8.26e-110 | 311 |
| Msa0345260 | MtrunA17_Chr4g0013571 | 65.169 | 178 | 62 | 0 | 6 | 183 | 1 | 178 | 3.67e-82 | 241 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345260 | AT1G33490.1 | 71.598 | 169 | 48 | 0 | 1 | 169 | 1 | 169 | 7.40e-85 | 248 |
| Msa0345260 | AT4G10140.1 | 64.286 | 182 | 65 | 0 | 1 | 182 | 1 | 182 | 3.08e-80 | 236 |
| Msa0345260 | AT1G33490.3 | 73.846 | 130 | 34 | 0 | 1 | 130 | 1 | 130 | 5.83e-66 | 199 |
| Msa0345260 | AT1G33490.2 | 72.441 | 127 | 35 | 0 | 43 | 169 | 1 | 127 | 1.01e-62 | 190 |
Find 54 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCATCACCTTTCATTCT+TGG | 0.152177 | 3_1:+4400000 | Msa0345260:CDS |
| TATGATGCTCACGAACTTTA+TGG | 0.165738 | 3_1:+4398098 | Msa0345260:CDS |
| TTATCACAGTTTGAAAATTT+AGG | 0.242645 | 3_1:-4396171 | None:intergenic |
| AAGACTTGTTCCTGTTTATA+AGG | 0.263804 | 3_1:+4400226 | Msa0345260:three_prime_UTR |
| TTTAAAGCATCAGATGTTAA+AGG | 0.291346 | 3_1:-4398852 | None:intergenic |
| GCAGAGAAAGCCAACTGATT+TGG | 0.316448 | 3_1:-4397236 | None:intergenic |
| TTCAAACTCTTCTGATAAAC+AGG | 0.321433 | 3_1:+4400331 | Msa0345260:three_prime_UTR |
| CGCTTTGGTGAATTTATGTC+TGG | 0.345445 | 3_1:+4398816 | Msa0345260:CDS |
| TTGGCTTTCTCTGCTGCTCT+TGG | 0.354022 | 3_1:+4397245 | Msa0345260:CDS |
| ATTGTTCCGTTTCTACGCTT+TGG | 0.358192 | 3_1:+4398801 | Msa0345260:CDS |
| TTAAAGCATCAGATGTTAAA+GGG | 0.367451 | 3_1:-4398851 | None:intergenic |
| GTTATGAACATGTTCTTTAG+TGG | 0.371547 | 3_1:+4400179 | Msa0345260:three_prime_UTR |
| GCTTTAAAGAAAGTTCTTAC+TGG | 0.374819 | 3_1:+4398867 | Msa0345260:CDS |
| GCATATTACCTCAACTCTAT+TGG | 0.377682 | 3_1:-4398126 | None:intergenic |
| TTAAAATTCAAGTATATTGT+TGG | 0.396178 | 3_1:+4400388 | Msa0345260:three_prime_UTR |
| TCAAGTATATTGTTGGCATA+TGG | 0.403219 | 3_1:+4400395 | Msa0345260:three_prime_UTR |
| AAGAATCTCACCTTATAAAC+AGG | 0.404591 | 3_1:-4400236 | None:intergenic |
| GCTGCTCTTGGCATTACATT+GGG | 0.408552 | 3_1:+4397257 | Msa0345260:CDS |
| TGCTGCTCTTGGCATTACAT+TGG | 0.419462 | 3_1:+4397256 | Msa0345260:CDS |
| ATTTAGCTTGAAAATTGAAA+AGG | 0.430969 | 3_1:-4396203 | None:intergenic |
| TTCGAAACTTTGAACGAAGA+TGG | 0.430983 | 3_1:+4396226 | Msa0345260:exon |
| CTCTTGTTTCCATTCTTCAC+AGG | 0.437303 | 3_1:+4396300 | Msa0345260:CDS |
| ACAGCATACTTTACAACATA+AGG | 0.448054 | 3_1:-4400262 | None:intergenic |
| GGAAGATGGCTATTACCAAT+TGG | 0.470067 | 3_1:+4396255 | Msa0345260:CDS |
| TCCTTTCACACTCAGAACTA+AGG | 0.471434 | 3_1:+4400106 | Msa0345260:CDS |
| ACACTCAGAACTAAGGTTGA+AGG | 0.480792 | 3_1:+4400113 | Msa0345260:CDS |
| TTGGGAGTATTTCCTATATG+TGG | 0.488852 | 3_1:+4397275 | Msa0345260:CDS |
| TTTAGCTTGAAAATTGAAAA+GGG | 0.491622 | 3_1:-4396202 | None:intergenic |
| TGAAGAGTACCTGTGAAGAA+TGG | 0.505109 | 3_1:-4396309 | None:intergenic |
| AATTACAACATACCACATAT+AGG | 0.509787 | 3_1:-4397287 | None:intergenic |
| AAACAGGTTCATAGAGATAG+AGG | 0.509858 | 3_1:+4400347 | Msa0345260:three_prime_UTR |
| AATTCACCAAAGCGTAGAAA+CGG | 0.510527 | 3_1:-4398807 | None:intergenic |
| ACCTTAGTTCTGAGTGTGAA+AGG | 0.513975 | 3_1:-4400107 | None:intergenic |
| GGAATGGCTATTGCATTGCT+TGG | 0.517080 | 3_1:+4398054 | Msa0345260:CDS |
| CACTGTATTCCTCTGCGGAA+TGG | 0.522128 | 3_1:+4398038 | Msa0345260:CDS |
| TTTGGTGAATTTATGTCTGG+CGG | 0.528238 | 3_1:+4398819 | Msa0345260:CDS |
| TTTGAACGAAGATGGCGAAT+GGG | 0.528659 | 3_1:+4396234 | Msa0345260:exon |
| GAAGATGGCGAATGGGAAGA+TGG | 0.532129 | 3_1:+4396241 | Msa0345260:exon |
| TTGGTGAATTTATGTCTGGC+GGG | 0.533407 | 3_1:+4398820 | Msa0345260:CDS |
| CTTTGAACGAAGATGGCGAA+TGG | 0.546126 | 3_1:+4396233 | Msa0345260:exon |
| AAGTTCGTGAGCATCATAGT+TGG | 0.557950 | 3_1:-4398093 | None:intergenic |
| TGAACTAGAATTCTGAACAA+TGG | 0.566355 | 3_1:-4400045 | None:intergenic |
| TATAGTGCTCCAAGAATGAA+AGG | 0.570927 | 3_1:-4400009 | None:intergenic |
| TCAGATGTTAAAGGGAAATG+AGG | 0.588588 | 3_1:-4398843 | None:intergenic |
| AGGAGCTGAACCAAATCAGT+TGG | 0.589478 | 3_1:+4397226 | Msa0345260:CDS |
| AGAGGTATAATTCAGAAGTA+CGG | 0.590091 | 3_1:+4400365 | Msa0345260:three_prime_UTR |
| TGGCGACGCCAATAGAGTTG+AGG | 0.614691 | 3_1:+4398118 | Msa0345260:CDS |
| CTGTGAAGAATGGAAACAAG+AGG | 0.624294 | 3_1:-4396299 | None:intergenic |
| CATATTAAGCGTTGTCCATG+CGG | 0.628787 | 3_1:+4398908 | Msa0345260:CDS |
| AGTTCTGAGTGTGAAAGGAG+TGG | 0.632827 | 3_1:-4400102 | None:intergenic |
| TACTGGTCAAGCTTCACACG+AGG | 0.668132 | 3_1:+4398884 | Msa0345260:CDS |
| GTTTGACAAATATAGTAACA+TGG | 0.686824 | 3_1:+4400144 | Msa0345260:exon |
| ATGCAATAGCCATTCCGCAG+AGG | 0.697698 | 3_1:-4398047 | None:intergenic |
| GGTGTCACTGTATTCCTCTG+CGG | 0.703627 | 3_1:+4398033 | Msa0345260:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTCTTTATATGAT+TGG | + | chr3_1:4397421-4397440 | Msa0345260:intron | 10.0% |
| !!! | ATATTGATAGTTTAATTATT+TGG | + | chr3_1:4398766-4398785 | Msa0345260:intron | 10.0% |
| !!! | AATTTTATTTCTGTAATGAT+TGG | + | chr3_1:4396400-4396419 | Msa0345260:intron | 15.0% |
| !! | TAAAGAAAAAAAAAACAAAC+TGG | - | chr3_1:4397415-4397434 | None:intergenic | 15.0% |
| !!! | AAATTATTTTGATTGTAACA+TGG | - | chr3_1:4398225-4398244 | None:intergenic | 15.0% |
| !!! | TTTTGAGTTTACATTATATA+TGG | + | chr3_1:4398563-4398582 | Msa0345260:intron | 15.0% |
| !!! | TTTGCTATTAGAATTTTAAT+AGG | - | chr3_1:4399149-4399168 | None:intergenic | 15.0% |
| !! | AAATTCTAATAGCAAATATT+AGG | + | chr3_1:4399153-4399172 | Msa0345260:intron | 15.0% |
| !! | TTAAAATTCAAGTATATTGT+TGG | + | chr3_1:4400388-4400407 | Msa0345260:three_prime_UTR | 15.0% |
| !! | TTATCACAGTTTGAAAATTT+AGG | - | chr3_1:4396174-4396193 | None:intergenic | 20.0% |
| !!! | TTTAGCTTGAAAATTGAAAA+GGG | - | chr3_1:4396205-4396224 | None:intergenic | 20.0% |
| !!! | ATTTAGCTTGAAAATTGAAA+AGG | - | chr3_1:4396206-4396225 | None:intergenic | 20.0% |
| !! | TTATCACAATAAACAAATAG+TGG | - | chr3_1:4396361-4396380 | None:intergenic | 20.0% |
| !!! | ATAATCAAAGTCAGTTTTAA+AGG | - | chr3_1:4396487-4396506 | None:intergenic | 20.0% |
| !!! | TGATTTTGATATGTTTTGTT+CGG | + | chr3_1:4396704-4396723 | Msa0345260:intron | 20.0% |
| !! | ATATATATCCAGGAAATTAT+GGG | - | chr3_1:4397021-4397040 | None:intergenic | 20.0% |
| !!! | TTATTTTAGCATATATATCC+AGG | - | chr3_1:4397031-4397050 | None:intergenic | 20.0% |
| !! | TTAGATATGAAATGTCTTTA+TGG | + | chr3_1:4397120-4397139 | Msa0345260:intron | 20.0% |
| !! | ATTGAATTACAGTTATCTTT+AGG | - | chr3_1:4397184-4397203 | None:intergenic | 20.0% |
| !! | TCATGAAATTAAGCTTAAAA+AGG | - | chr3_1:4397551-4397570 | None:intergenic | 20.0% |
| !!! | TTTTCTTAGATTTTCCTAAT+TGG | - | chr3_1:4398401-4398420 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGATAGAGAACTA+TGG | + | chr3_1:4398470-4398489 | Msa0345260:intron | 20.0% |
| !! | AAATCAACAGGAAAATATTA+TGG | - | chr3_1:4398948-4398967 | None:intergenic | 20.0% |
| !! | GATATGGTTAAAGAATAAAT+AGG | - | chr3_1:4399776-4399795 | None:intergenic | 20.0% |
| !!! | AAATCAAATACTTTAGGATA+TGG | - | chr3_1:4399792-4399811 | None:intergenic | 20.0% |
| !! | ACTATGTAACAATTAAAAAC+AGG | + | chr3_1:4400303-4400322 | Msa0345260:three_prime_UTR | 20.0% |
| !! | CTATGTAACAATTAAAAACA+GGG | + | chr3_1:4400304-4400323 | Msa0345260:three_prime_UTR | 20.0% |
| !! | TAAAACTGACTTTGATTATG+AGG | + | chr3_1:4396488-4396507 | Msa0345260:intron | 25.0% |
| !!! | TTCTTTGAAGAAAGTGATTT+TGG | + | chr3_1:4396561-4396580 | Msa0345260:intron | 25.0% |
| !!! | AAGTGATTTTGGTATCAAAA+AGG | + | chr3_1:4396572-4396591 | Msa0345260:intron | 25.0% |
| !!! | AGTGATTTTGGTATCAAAAA+GGG | + | chr3_1:4396573-4396592 | Msa0345260:intron | 25.0% |
| !! | TGTTTGTAAAAGTGTATGTT+TGG | + | chr3_1:4396637-4396656 | Msa0345260:intron | 25.0% |
| !!! | ATTTTGGTTAATCCAAAAGT+GGG | - | chr3_1:4396664-4396683 | None:intergenic | 25.0% |
| !!! | AATTTTGGTTAATCCAAAAG+TGG | - | chr3_1:4396665-4396684 | None:intergenic | 25.0% |
| ! | CATATATATCCAGGAAATTA+TGG | - | chr3_1:4397022-4397041 | None:intergenic | 25.0% |
| ! | TGATATCAAGCATAAATAAG+AGG | - | chr3_1:4397071-4397090 | None:intergenic | 25.0% |
| !!! | TTTTGCTATGTTTTTTTCAG+AGG | + | chr3_1:4397206-4397225 | Msa0345260:intron | 25.0% |
| ! | AATTACAACATACCACATAT+AGG | - | chr3_1:4397290-4397309 | None:intergenic | 25.0% |
| ! | TGGTTAATGATTATGCTAAA+TGG | - | chr3_1:4397395-4397414 | None:intergenic | 25.0% |
| ! | TTCTTTATATGATTGGACAT+TGG | + | chr3_1:4397428-4397447 | Msa0345260:intron | 25.0% |
| ! | TCTTTATATGATTGGACATT+GGG | + | chr3_1:4397429-4397448 | Msa0345260:intron | 25.0% |
| !! | TTTTTGTTCATGCTATAAGT+GGG | - | chr3_1:4397597-4397616 | None:intergenic | 25.0% |
| ! | TATATGGATGTGAAATATGT+CGG | + | chr3_1:4397966-4397985 | Msa0345260:intron | 25.0% |
| ! | TCTGCAATATGTTAAATATG+AGG | + | chr3_1:4397993-4398012 | Msa0345260:intron | 25.0% |
| ! | TTCTAATTTAATTGCATCCA+AGG | + | chr3_1:4398328-4398347 | Msa0345260:intron | 25.0% |
| !! | TTAAAGCATCAGATGTTAAA+GGG | - | chr3_1:4398854-4398873 | None:intergenic | 25.0% |
| !! | TTTAAAGCATCAGATGTTAA+AGG | - | chr3_1:4398855-4398874 | None:intergenic | 25.0% |
| ! | AGGAAAATATTATGGTATAG+TGG | - | chr3_1:4398940-4398959 | None:intergenic | 25.0% |
| !!! | TCCTGTTGATTTATTTTGAA+AGG | + | chr3_1:4398956-4398975 | Msa0345260:intron | 25.0% |
| ! | TCCTTTCAAAATAAATCAAC+AGG | - | chr3_1:4398960-4398979 | None:intergenic | 25.0% |
| ! | GCGATTATTTAATGCAAAAA+AGG | - | chr3_1:4399088-4399107 | None:intergenic | 25.0% |
| ! | TAATAGCAAATATTAGGTCT+TGG | + | chr3_1:4399159-4399178 | Msa0345260:intron | 25.0% |
| !!! | AAAATCTAATGGATTAGGAT+CGG | - | chr3_1:4399356-4399375 | None:intergenic | 25.0% |
| !! | ATCCTAATCCATTAGATTTT+AGG | + | chr3_1:4399356-4399375 | Msa0345260:intron | 25.0% |
| ! | AACTATCTTAAATCAGTTGT+CGG | - | chr3_1:4399527-4399546 | None:intergenic | 25.0% |
| ! | AAGAATAAATAGGACAATCA+GGG | - | chr3_1:4399766-4399785 | None:intergenic | 25.0% |
| ! | AAAGAATAAATAGGACAATC+AGG | - | chr3_1:4399767-4399786 | None:intergenic | 25.0% |
| !!! | TCCTAAAGTATTTGATTTTC+TGG | + | chr3_1:4399794-4399813 | Msa0345260:intron | 25.0% |
| ! | ACCAGAAAATCAAATACTTT+AGG | - | chr3_1:4399798-4399817 | None:intergenic | 25.0% |
| !!! | GTAACATAAAGGTATTTTTG+TGG | - | chr3_1:4399847-4399866 | None:intergenic | 25.0% |
| !! | ATCAAACTTTTGCAGTTATA+TGG | + | chr3_1:4399970-4399989 | Msa0345260:intron | 25.0% |
| !! | TCAAACTTTTGCAGTTATAT+GGG | + | chr3_1:4399971-4399990 | Msa0345260:intron | 25.0% |
| ! | GTTTGACAAATATAGTAACA+TGG | + | chr3_1:4400144-4400163 | Msa0345260:exon | 25.0% |
| !!! | CATCGATTTGTAAAAATAAC+AGG | - | chr3_1:4400494-4400513 | None:intergenic | 25.0% |
| GGTTATATGTGATCTGTTTA+TGG | + | chr3_1:4396421-4396440 | Msa0345260:intron | 30.0% | |
| TGACTTTGATTATGAGGTTT+AGG | + | chr3_1:4396494-4396513 | Msa0345260:intron | 30.0% | |
| GACTTTGATTATGAGGTTTA+GGG | + | chr3_1:4396495-4396514 | Msa0345260:intron | 30.0% | |
| ACTTTGATTATGAGGTTTAG+GGG | + | chr3_1:4396496-4396515 | Msa0345260:intron | 30.0% | |
| ! | GGATTAACCAAAATTGATTC+TGG | + | chr3_1:4396670-4396689 | Msa0345260:intron | 30.0% |
| ! | TTAACCAAAATTGATTCTGG+AGG | + | chr3_1:4396673-4396692 | Msa0345260:intron | 30.0% |
| AGTGATTTATGTTTGGACTT+TGG | - | chr3_1:4396853-4396872 | None:intergenic | 30.0% | |
| AAGCTGAAGTGATTTATGTT+TGG | - | chr3_1:4396860-4396879 | None:intergenic | 30.0% | |
| !! | TCACTTTTAGAAGTTCTAAC+AGG | - | chr3_1:4396946-4396965 | None:intergenic | 30.0% |
| ! | AAGTTGTGACGTTTTTCTTT+TGG | + | chr3_1:4397148-4397167 | Msa0345260:intron | 30.0% |
| ATAAATGACGGTATAGTTCA+AGG | - | chr3_1:4397326-4397345 | None:intergenic | 30.0% | |
| AACTATACCGTCATTTATGT+AGG | + | chr3_1:4397328-4397347 | Msa0345260:intron | 30.0% | |
| TGCAAATACTAAACAAGACA+TGG | - | chr3_1:4397371-4397390 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr3_1:4397455-4397474 | None:intergenic | 30.0% | |
| ! | GTTTTTGTTCATGCTATAAG+TGG | - | chr3_1:4397598-4397617 | None:intergenic | 30.0% |
| GAATCATACAATGTCATAAC+TGG | - | chr3_1:4397720-4397739 | None:intergenic | 30.0% | |
| ! | AAATTTTTCTTAGCTGTGGT+TGG | - | chr3_1:4397749-4397768 | None:intergenic | 30.0% |
| ! | ACAGAAATTTTTCTTAGCTG+TGG | - | chr3_1:4397753-4397772 | None:intergenic | 30.0% |
| AAAAGAGTTGTAACTGTGTA+CGG | + | chr3_1:4397846-4397865 | Msa0345260:intron | 30.0% | |
| TAAGTGAAAGAAAGTAAGTG+CGG | + | chr3_1:4397917-4397936 | Msa0345260:intron | 30.0% | |
| ATTACGATTCACAAAGAGAA+TGG | - | chr3_1:4398186-4398205 | None:intergenic | 30.0% | |
| ! | TCTTTACGATCCATTTTGTT+AGG | + | chr3_1:4398268-4398287 | Msa0345260:intron | 30.0% |
| TAATTTAATTGCATCCAAGG+AGG | + | chr3_1:4398331-4398350 | Msa0345260:intron | 30.0% | |
| CTTCCATTTGTTCTACTTAT+CGG | - | chr3_1:4398373-4398392 | None:intergenic | 30.0% | |
| ! | GATTGTTGTTGTTAAATCCT+AGG | + | chr3_1:4398538-4398557 | Msa0345260:intron | 30.0% |
| AATGTAAACTCAAAACTCCT+AGG | - | chr3_1:4398558-4398577 | None:intergenic | 30.0% | |
| AAACATTGACATGAGAACAA+GGG | - | chr3_1:4398686-4398705 | None:intergenic | 30.0% | |
| !! | GCTTTAAAGAAAGTTCTTAC+TGG | + | chr3_1:4398867-4398886 | Msa0345260:CDS | 30.0% |
| ! | TATTTTATATCGTAGAGCGT+AGG | + | chr3_1:4399109-4399128 | Msa0345260:intron | 30.0% |
| TGATCTCAGATTAATGGTTT+GGG | - | chr3_1:4399229-4399248 | None:intergenic | 30.0% | |
| !! | AAATCTAATGGATTAGGATC+GGG | - | chr3_1:4399355-4399374 | None:intergenic | 30.0% |
| ! | AATAGGCATTGTTTATGACT+TGG | + | chr3_1:4399432-4399451 | Msa0345260:intron | 30.0% |
| AGATAGTTTATGACTCCATT+TGG | + | chr3_1:4399539-4399558 | Msa0345260:intron | 30.0% | |
| ! | TATGACTCCATTTGGATTTT+AGG | + | chr3_1:4399547-4399566 | Msa0345260:intron | 30.0% |
| ATTAGATATAGCACCTAACA+GGG | - | chr3_1:4399646-4399665 | None:intergenic | 30.0% | |
| GTGCTATATCTAATCTATGT+AGG | + | chr3_1:4399652-4399671 | Msa0345260:intron | 30.0% | |
| CTAATGGTAAACCATCATAT+AGG | + | chr3_1:4399688-4399707 | Msa0345260:intron | 30.0% | |
| TTCATTAAGTGGCAAAATCT+CGG | - | chr3_1:4399715-4399734 | None:intergenic | 30.0% | |
| ATCGTAAGTTCGTAACATAA+AGG | - | chr3_1:4399858-4399877 | None:intergenic | 30.0% | |
| TGAACTAGAATTCTGAACAA+TGG | - | chr3_1:4400048-4400067 | None:intergenic | 30.0% | |
| GTTATGAACATGTTCTTTAG+TGG | + | chr3_1:4400179-4400198 | Msa0345260:three_prime_UTR | 30.0% | |
| ! | AAGACTTGTTCCTGTTTATA+AGG | + | chr3_1:4400226-4400245 | Msa0345260:three_prime_UTR | 30.0% |
| AAGAATCTCACCTTATAAAC+AGG | - | chr3_1:4400239-4400258 | None:intergenic | 30.0% | |
| ACAGCATACTTTACAACATA+AGG | - | chr3_1:4400265-4400284 | None:intergenic | 30.0% | |
| TTCAAACTCTTCTGATAAAC+AGG | + | chr3_1:4400331-4400350 | Msa0345260:three_prime_UTR | 30.0% | |
| ! | AGAGGTATAATTCAGAAGTA+CGG | + | chr3_1:4400365-4400384 | Msa0345260:three_prime_UTR | 30.0% |
| TCAAGTATATTGTTGGCATA+TGG | + | chr3_1:4400395-4400414 | Msa0345260:three_prime_UTR | 30.0% | |
| TTCGAAACTTTGAACGAAGA+TGG | + | chr3_1:4396226-4396245 | Msa0345260:exon | 35.0% | |
| !!! | GATTTTCTTCTGGAACCAAT+TGG | - | chr3_1:4396273-4396292 | None:intergenic | 35.0% |
| ! | TGGATTCTATCACTTGTTGA+AGG | + | chr3_1:4396441-4396460 | Msa0345260:intron | 35.0% |
| !! | TTGGGAGTATTTCCTATATG+TGG | + | chr3_1:4397275-4397294 | Msa0345260:CDS | 35.0% |
| CTGCATTCCTACATAAATGA+CGG | - | chr3_1:4397338-4397357 | None:intergenic | 35.0% | |
| TACTAAACAAGACATGGTTG+CGG | - | chr3_1:4397365-4397384 | None:intergenic | 35.0% | |
| TTAAGCTGTTTGTCCAAACA+GGG | + | chr3_1:4397694-4397713 | Msa0345260:intron | 35.0% | |
| CACATCCATATATGCTTTCT+CGG | - | chr3_1:4397958-4397977 | None:intergenic | 35.0% | |
| ! | GAGGCTAATGTTTTGCAAAT+AGG | + | chr3_1:4398012-4398031 | Msa0345260:intron | 35.0% |
| TATGATGCTCACGAACTTTA+TGG | + | chr3_1:4398098-4398117 | Msa0345260:CDS | 35.0% | |
| GCATATTACCTCAACTCTAT+TGG | - | chr3_1:4398129-4398148 | None:intergenic | 35.0% | |
| ! | TTACGATCCATTTTGTTAGG+AGG | + | chr3_1:4398271-4398290 | Msa0345260:intron | 35.0% |
| AAATGGAAGACAGTCCAATT+AGG | + | chr3_1:4398384-4398403 | Msa0345260:intron | 35.0% | |
| ACAATCAAACCATCTTCACT+AGG | - | chr3_1:4398524-4398543 | None:intergenic | 35.0% | |
| CAAACATTGACATGAGAACA+AGG | - | chr3_1:4398687-4398706 | None:intergenic | 35.0% | |
| AATTCACCAAAGCGTAGAAA+CGG | - | chr3_1:4398810-4398829 | None:intergenic | 35.0% | |
| TTTGGTGAATTTATGTCTGG+CGG | + | chr3_1:4398819-4398838 | Msa0345260:CDS | 35.0% | |
| TCAGATGTTAAAGGGAAATG+AGG | - | chr3_1:4398846-4398865 | None:intergenic | 35.0% | |
| ! | ACCAAATGCGCATTTTACAT+AGG | + | chr3_1:4399035-4399054 | Msa0345260:intron | 35.0% |
| ACCTATGTAAAATGCGCATT+TGG | - | chr3_1:4399039-4399058 | None:intergenic | 35.0% | |
| CTGATCTCAGATTAATGGTT+TGG | - | chr3_1:4399230-4399249 | None:intergenic | 35.0% | |
| ! | ACCATTAATCTGAGATCAGA+CGG | + | chr3_1:4399231-4399250 | Msa0345260:intron | 35.0% |
| AATTGAGATCAAAAACTGCG+TGG | + | chr3_1:4399316-4399335 | Msa0345260:intron | 35.0% | |
| !! | GGCCTAAAATCTAATGGATT+AGG | - | chr3_1:4399361-4399380 | None:intergenic | 35.0% |
| GAATCAGGCCTAAAATCTAA+TGG | - | chr3_1:4399367-4399386 | None:intergenic | 35.0% | |
| ACAATGCCTATTACAAAGCT+TGG | - | chr3_1:4399424-4399443 | None:intergenic | 35.0% | |
| ! | CTGCACAAAACTAACTTGTA+CGG | + | chr3_1:4399587-4399606 | Msa0345260:intron | 35.0% |
| ! | AGCTTTATAAACTCCCTGTT+AGG | + | chr3_1:4399630-4399649 | Msa0345260:intron | 35.0% |
| GATTAGATATAGCACCTAAC+AGG | - | chr3_1:4399647-4399666 | None:intergenic | 35.0% | |
| ! | AGGACTTGAGTCTTTTCTAA+TGG | + | chr3_1:4399672-4399691 | Msa0345260:intron | 35.0% |
| AAAATCTCGGTCCTATATGA+TGG | - | chr3_1:4399702-4399721 | None:intergenic | 35.0% | |
| ! | CAATTTTCCTTTTGCAATGC+AGG | + | chr3_1:4399878-4399897 | Msa0345260:intron | 35.0% |
| ! | AACTTTTGCAGTTATATGGG+TGG | + | chr3_1:4399974-4399993 | Msa0345260:intron | 35.0% |
| TATAGTGCTCCAAGAATGAA+AGG | - | chr3_1:4400012-4400031 | None:intergenic | 35.0% | |
| !! | TTTTGGACTTAAAGGTACAC+TGG | - | chr3_1:4400079-4400098 | None:intergenic | 35.0% |
| !!! | AGTGGCTTTTTTGGACTTAA+AGG | - | chr3_1:4400087-4400106 | None:intergenic | 35.0% |
| AAACAGGTTCATAGAGATAG+AGG | + | chr3_1:4400347-4400366 | Msa0345260:three_prime_UTR | 35.0% | |
| TTTGAACGAAGATGGCGAAT+GGG | + | chr3_1:4396234-4396253 | Msa0345260:exon | 40.0% | |
| GGAAGATGGCTATTACCAAT+TGG | + | chr3_1:4396255-4396274 | Msa0345260:CDS | 40.0% | |
| !!! | GAGGATCACTGATTTTCTTC+TGG | - | chr3_1:4396283-4396302 | None:intergenic | 40.0% |
| CTGTGAAGAATGGAAACAAG+AGG | - | chr3_1:4396302-4396321 | None:intergenic | 40.0% | |
| ! | CTCTTGTTTCCATTCTTCAC+AGG | + | chr3_1:4396300-4396319 | Msa0345260:CDS | 40.0% |
| !! | TGAAGAGTACCTGTGAAGAA+TGG | - | chr3_1:4396312-4396331 | None:intergenic | 40.0% |
| ! | TGTATGTTTGGTCCCACTTT+TGG | + | chr3_1:4396649-4396668 | Msa0345260:intron | 40.0% |
| ! | TGCACCTCCAGAATCAATTT+TGG | - | chr3_1:4396680-4396699 | None:intergenic | 40.0% |
| TTGTTCGGCTAGAGAAGAAT+TGG | + | chr3_1:4396719-4396738 | Msa0345260:intron | 40.0% | |
| CAAATGTGCCCATAATTTCC+TGG | + | chr3_1:4397010-4397029 | Msa0345260:intron | 40.0% | |
| ATGACGGTATAGTTCAAGGT+GGG | - | chr3_1:4397322-4397341 | None:intergenic | 40.0% | |
| AATGACGGTATAGTTCAAGG+TGG | - | chr3_1:4397323-4397342 | None:intergenic | 40.0% | |
| ACTAAACAAGACATGGTTGC+GGG | - | chr3_1:4397364-4397383 | None:intergenic | 40.0% | |
| GTGGGTTTCATAAGCTATCT+TGG | - | chr3_1:4397579-4397598 | None:intergenic | 40.0% | |
| GTTAAGCTGTTTGTCCAAAC+AGG | + | chr3_1:4397693-4397712 | Msa0345260:intron | 40.0% | |
| ! | AGGATCCGAGAAAGCATATA+TGG | + | chr3_1:4397950-4397969 | Msa0345260:intron | 40.0% |
| AAGTTCGTGAGCATCATAGT+TGG | - | chr3_1:4398096-4398115 | None:intergenic | 40.0% | |
| ! | GATCCATTTTGTTAGGAGGA+TGG | + | chr3_1:4398275-4398294 | Msa0345260:intron | 40.0% |
| AAGCCATCCTCCTAACAAAA+TGG | - | chr3_1:4398281-4398300 | None:intergenic | 40.0% | |
| CCATTTGTTCTACTTATCGG+CGG | - | chr3_1:4398370-4398389 | None:intergenic | 40.0% | |
| GACACAGGGATGTAAAATTG+TGG | - | chr3_1:4398610-4398629 | None:intergenic | 40.0% | |
| CAATGGCACTAAAAGACACA+GGG | - | chr3_1:4398624-4398643 | None:intergenic | 40.0% | |
| TCAATGGCACTAAAAGACAC+AGG | - | chr3_1:4398625-4398644 | None:intergenic | 40.0% | |
| GTGGCATATCAATGAGTCAA+TGG | - | chr3_1:4398641-4398660 | None:intergenic | 40.0% | |
| ATTGTTCCGTTTCTACGCTT+TGG | + | chr3_1:4398801-4398820 | Msa0345260:CDS | 40.0% | |
| CGCTTTGGTGAATTTATGTC+TGG | + | chr3_1:4398816-4398835 | Msa0345260:CDS | 40.0% | |
| TTGGTGAATTTATGTCTGGC+GGG | + | chr3_1:4398820-4398839 | Msa0345260:CDS | 40.0% | |
| ! | CATATTAAGCGTTGTCCATG+CGG | + | chr3_1:4398908-4398927 | Msa0345260:CDS | 40.0% |
| TTTATATCGTAGAGCGTAGG+TGG | + | chr3_1:4399112-4399131 | Msa0345260:intron | 40.0% | |
| ACCGTCTGATCTCAGATTAA+TGG | - | chr3_1:4399235-4399254 | None:intergenic | 40.0% | |
| ! | ACCTTACACATCGGTTAAGT+GGG | - | chr3_1:4399393-4399412 | None:intergenic | 40.0% |
| ! | TGAGTGCCAAGCTTTGTAAT+AGG | + | chr3_1:4399415-4399434 | Msa0345260:intron | 40.0% |
| TAGGCATGAGAGGATATACT+AGG | - | chr3_1:4399464-4399483 | None:intergenic | 40.0% | |
| ATGCCTAACACTATTGGACA+TGG | + | chr3_1:4399477-4399496 | Msa0345260:intron | 40.0% | |
| ACACCATGTCCAATAGTGTT+AGG | - | chr3_1:4399483-4399502 | None:intergenic | 40.0% | |
| GACATGGTGTGTGGATAATA+TGG | + | chr3_1:4399493-4399512 | Msa0345260:intron | 40.0% | |
| ATGGTGTGTGGATAATATGG+TGG | + | chr3_1:4399496-4399515 | Msa0345260:intron | 40.0% | |
| CGTTAGGCCTAAAATCCAAA+TGG | - | chr3_1:4399557-4399576 | None:intergenic | 40.0% | |
| ! | CAAAACTAACTTGTACGGTG+AGG | + | chr3_1:4399592-4399611 | Msa0345260:intron | 40.0% |
| ACAGGGAGTTTATAAAGCTC+TGG | - | chr3_1:4399629-4399648 | None:intergenic | 40.0% | |
| GATTGCGTGCATTCATTAAG+TGG | - | chr3_1:4399726-4399745 | None:intergenic | 40.0% | |
| CACAAATCCTGCATTGCAAA+AGG | - | chr3_1:4399888-4399907 | None:intergenic | 40.0% | |
| !!! | TGTGAAAGGAGTGGCTTTTT+TGG | - | chr3_1:4400096-4400115 | None:intergenic | 40.0% |
| TCCTTTCACACTCAGAACTA+AGG | + | chr3_1:4400106-4400125 | Msa0345260:CDS | 40.0% | |
| !! | ACCTTAGTTCTGAGTGTGAA+AGG | - | chr3_1:4400110-4400129 | None:intergenic | 40.0% |
| ACACTCAGAACTAAGGTTGA+AGG | + | chr3_1:4400113-4400132 | Msa0345260:CDS | 40.0% | |
| CTTTGAACGAAGATGGCGAA+TGG | + | chr3_1:4396233-4396252 | Msa0345260:exon | 45.0% | |
| AGGAGCTGAACCAAATCAGT+TGG | + | chr3_1:4397226-4397245 | Msa0345260:CDS | 45.0% | |
| GCAGAGAAAGCCAACTGATT+TGG | - | chr3_1:4397239-4397258 | None:intergenic | 45.0% | |
| TGCTGCTCTTGGCATTACAT+TGG | + | chr3_1:4397256-4397275 | Msa0345260:CDS | 45.0% | |
| GCTGCTCTTGGCATTACATT+GGG | + | chr3_1:4397257-4397276 | Msa0345260:CDS | 45.0% | |
| CTAAACAAGACATGGTTGCG+GGG | - | chr3_1:4397363-4397382 | None:intergenic | 45.0% | |
| ATGTCATAACTGGCCCTGTT+TGG | - | chr3_1:4397710-4397729 | None:intergenic | 45.0% | |
| GGAATGGCTATTGCATTGCT+TGG | + | chr3_1:4398054-4398073 | Msa0345260:CDS | 45.0% | |
| GATGGCTTCTTAGTTTCTCG+TGG | + | chr3_1:4398293-4398312 | Msa0345260:intron | 45.0% | |
| CATCCAAGGAGGATGAATAG+AGG | + | chr3_1:4398342-4398361 | Msa0345260:intron | 45.0% | |
| CCGCCGATAAGTAGAACAAA+TGG | + | chr3_1:4398367-4398386 | Msa0345260:intron | 45.0% | |
| TCATTCCTGCCTAGTGAAGA+TGG | + | chr3_1:4398512-4398531 | Msa0345260:intron | 45.0% | |
| TCAAACCATCTTCACTAGGC+AGG | - | chr3_1:4398520-4398539 | None:intergenic | 45.0% | |
| CTCATTGATATGCCACGTCT+TGG | + | chr3_1:4398645-4398664 | Msa0345260:intron | 45.0% | |
| ATGCCACGTCTTGGACATAT+AGG | + | chr3_1:4398654-4398673 | Msa0345260:intron | 45.0% | |
| GAACCTATATGTCCAAGACG+TGG | - | chr3_1:4398660-4398679 | None:intergenic | 45.0% | |
| GATCGTTTGATCAAACTGCG+TGG | - | chr3_1:4399207-4399226 | None:intergenic | 45.0% | |
| ! | CCTTACACATCGGTTAAGTG+GGG | - | chr3_1:4399392-4399411 | None:intergenic | 45.0% |
| ! | CACCTTACACATCGGTTAAG+TGG | - | chr3_1:4399394-4399413 | None:intergenic | 45.0% |
| CACTTAACCGATGTGTAAGG+TGG | + | chr3_1:4399392-4399411 | Msa0345260:intron | 45.0% | |
| CCAATAGTGTTAGGCATGAG+AGG | - | chr3_1:4399474-4399493 | None:intergenic | 45.0% | |
| CCTCTCATGCCTAACACTAT+TGG | + | chr3_1:4399471-4399490 | Msa0345260:intron | 45.0% | |
| ACACTATTGGACATGGTGTG+TGG | + | chr3_1:4399484-4399503 | Msa0345260:intron | 45.0% | |
| GTGCAGTTATCTGTTGCGTT+AGG | - | chr3_1:4399573-4399592 | None:intergenic | 45.0% | |
| GCTGCATCACCTTTCATTCT+TGG | + | chr3_1:4400000-4400019 | Msa0345260:CDS | 45.0% | |
| !! | AGTTCTGAGTGTGAAAGGAG+TGG | - | chr3_1:4400105-4400124 | None:intergenic | 45.0% |
| GAAGATGGCGAATGGGAAGA+TGG | + | chr3_1:4396241-4396260 | Msa0345260:exon | 50.0% | |
| ! | TTGGCTTTCTCTGCTGCTCT+TGG | + | chr3_1:4397245-4397264 | Msa0345260:CDS | 50.0% |
| GATTGGACATTGGGCCTGTT+TGG | + | chr3_1:4397438-4397457 | Msa0345260:intron | 50.0% | |
| TTTCTCGGATCCTCTACAGC+AGG | - | chr3_1:4397943-4397962 | None:intergenic | 50.0% | |
| !! | GGTGTCACTGTATTCCTCTG+CGG | + | chr3_1:4398033-4398052 | Msa0345260:intron | 50.0% |
| CACTGTATTCCTCTGCGGAA+TGG | + | chr3_1:4398038-4398057 | Msa0345260:CDS | 50.0% | |
| ATGCAATAGCCATTCCGCAG+AGG | - | chr3_1:4398050-4398069 | None:intergenic | 50.0% | |
| GAGCCTCTATTCATCCTCCT+TGG | - | chr3_1:4398348-4398367 | None:intergenic | 50.0% | |
| TACTGGTCAAGCTTCACACG+AGG | + | chr3_1:4398884-4398903 | Msa0345260:CDS | 50.0% | |
| ! | TTAAGCGTTGTCCATGCGGT+AGG | + | chr3_1:4398912-4398931 | Msa0345260:intron | 50.0% |
| GTAGAGCGTAGGTGGTTGTT+TGG | + | chr3_1:4399120-4399139 | Msa0345260:intron | 50.0% | |
| GGAATTGCTGCAGGCAATCT+GGG | - | chr3_1:4399186-4399205 | None:intergenic | 50.0% | |
| TGGAATTGCTGCAGGCAATC+TGG | - | chr3_1:4399187-4399206 | None:intergenic | 50.0% | |
| AAACTGCGTGGAATTGCTGC+AGG | - | chr3_1:4399195-4399214 | None:intergenic | 50.0% | |
| CGGTTAAGTGGGGTTGAATC+AGG | - | chr3_1:4399382-4399401 | None:intergenic | 50.0% | |
| CCCCACTTAACCGATGTGTA+AGG | + | chr3_1:4399389-4399408 | Msa0345260:intron | 50.0% | |
| GCACTCACCACCTTACACAT+CGG | - | chr3_1:4399402-4399421 | None:intergenic | 50.0% | |
| AACTTGTACGGTGAGGACTG+AGG | + | chr3_1:4399599-4399618 | Msa0345260:intron | 50.0% | |
| ! | GCACGCAATCTGTTTTCCTG+TGG | + | chr3_1:4399736-4399755 | Msa0345260:intron | 50.0% |
| GGACAATCAGGGAATACCAC+AGG | - | chr3_1:4399755-4399774 | None:intergenic | 50.0% | |
| GATCCTCTACAGCAGCTGCA+TGG | + | chr3_1:4397868-4397887 | Msa0345260:intron | 55.0% | |
| TGGCGACGCCAATAGAGTTG+AGG | + | chr3_1:4398118-4398137 | Msa0345260:CDS | 55.0% | |
| GTATAGTGGCACCTACCGCA+TGG | - | chr3_1:4398926-4398945 | None:intergenic | 55.0% | |
| GCACCATGCAGCTGCTGTAG+AGG | - | chr3_1:4397874-4397893 | None:intergenic | 60.0% | |
| GCAGCACACTGCACAGCTGT+TGG | + | chr3_1:4397892-4397911 | Msa0345260:intron | 60.0% | |
| GTAAGTGCGGCCTGCTGTAG+AGG | + | chr3_1:4397930-4397949 | Msa0345260:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 4396110 | 4400565 | 4396110 | ID=Msa0345260;Name=Msa0345260 |
| chr3_1 | mRNA | 4396110 | 4400565 | 4396110 | ID=Msa0345260-mRNA-1;Parent=Msa0345260;Name=Msa0345260-mRNA-1;_AED=0.08;_eAED=0.08;_QI=112|1|1|1|0.6|0.5|6|416|183 |
| chr3_1 | exon | 4396110 | 4396128 | 4396110 | ID=Msa0345260-mRNA-1:exon:1417;Parent=Msa0345260-mRNA-1 |
| chr3_1 | exon | 4396152 | 4396321 | 4396152 | ID=Msa0345260-mRNA-1:exon:1418;Parent=Msa0345260-mRNA-1 |
| chr3_1 | exon | 4397226 | 4397296 | 4397226 | ID=Msa0345260-mRNA-1:exon:1419;Parent=Msa0345260-mRNA-1 |
| chr3_1 | exon | 4398034 | 4398139 | 4398034 | ID=Msa0345260-mRNA-1:exon:1420;Parent=Msa0345260-mRNA-1 |
| chr3_1 | exon | 4398797 | 4398929 | 4398797 | ID=Msa0345260-mRNA-1:exon:1421;Parent=Msa0345260-mRNA-1 |
| chr3_1 | exon | 4399985 | 4400565 | 4399985 | ID=Msa0345260-mRNA-1:exon:1422;Parent=Msa0345260-mRNA-1 |
| chr3_1 | five_prime_UTR | 4396110 | 4396128 | 4396110 | ID=Msa0345260-mRNA-1:five_prime_utr;Parent=Msa0345260-mRNA-1 |
| chr3_1 | five_prime_UTR | 4396152 | 4396244 | 4396152 | ID=Msa0345260-mRNA-1:five_prime_utr;Parent=Msa0345260-mRNA-1 |
| chr3_1 | CDS | 4396245 | 4396321 | 4396245 | ID=Msa0345260-mRNA-1:cds;Parent=Msa0345260-mRNA-1 |
| chr3_1 | CDS | 4397226 | 4397296 | 4397226 | ID=Msa0345260-mRNA-1:cds;Parent=Msa0345260-mRNA-1 |
| chr3_1 | CDS | 4398034 | 4398139 | 4398034 | ID=Msa0345260-mRNA-1:cds;Parent=Msa0345260-mRNA-1 |
| chr3_1 | CDS | 4398797 | 4398929 | 4398797 | ID=Msa0345260-mRNA-1:cds;Parent=Msa0345260-mRNA-1 |
| chr3_1 | CDS | 4399985 | 4400149 | 4399985 | ID=Msa0345260-mRNA-1:cds;Parent=Msa0345260-mRNA-1 |
| chr3_1 | three_prime_UTR | 4400150 | 4400565 | 4400150 | ID=Msa0345260-mRNA-1:three_prime_utr;Parent=Msa0345260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
