Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391940 | XP_003598092.2 | 99.454 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 1.72e-128 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391940 | G7J0A0 | 99.454 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 8.22e-129 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0391940 | Msa0392710 | 0.845340 | 4.317646e-59 | -8.615850e-47 |
| Msa0345260 | Msa0391940 | 0.989899 | 3.797524e-180 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391940 | MtrunA17_Chr3g0077951 | 100.000 | 156 | 0 | 0 | 28 | 183 | 24 | 179 | 8.26e-110 | 311 |
| Msa0391940 | MtrunA17_Chr4g0013571 | 65.169 | 178 | 62 | 0 | 6 | 183 | 1 | 178 | 3.67e-82 | 241 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391940 | AT1G33490.1 | 71.598 | 169 | 48 | 0 | 1 | 169 | 1 | 169 | 7.40e-85 | 248 |
| Msa0391940 | AT4G10140.1 | 64.286 | 182 | 65 | 0 | 1 | 182 | 1 | 182 | 3.08e-80 | 236 |
| Msa0391940 | AT1G33490.3 | 73.846 | 130 | 34 | 0 | 1 | 130 | 1 | 130 | 5.83e-66 | 199 |
| Msa0391940 | AT1G33490.2 | 72.441 | 127 | 35 | 0 | 43 | 169 | 1 | 127 | 1.01e-62 | 190 |
Find 54 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCATCACCTTTCATTCT+TGG | 0.152177 | 3_2:+4846949 | Msa0391940:CDS |
| TATGATGCTCACGAACTTTA+TGG | 0.165738 | 3_2:+4845047 | Msa0391940:CDS |
| TTATCACAGTTTGAAAATTT+AGG | 0.242645 | 3_2:-4843119 | None:intergenic |
| AAGACTTGTTCCTGTTTATA+AGG | 0.263804 | 3_2:+4847175 | Msa0391940:three_prime_UTR |
| TTTAAAGCATCAGATGTTAA+AGG | 0.291346 | 3_2:-4845801 | None:intergenic |
| GCAGAGAAAGCCAACTGATT+TGG | 0.316448 | 3_2:-4844184 | None:intergenic |
| TTCAAACTCTTCTGATAAAC+AGG | 0.321433 | 3_2:+4847280 | Msa0391940:three_prime_UTR |
| CGCTTTGGTGAATTTATGTC+TGG | 0.345445 | 3_2:+4845765 | Msa0391940:CDS |
| TTGGCTTTCTCTGCTGCTCT+TGG | 0.354022 | 3_2:+4844193 | Msa0391940:CDS |
| ATTGTTCCGTTTCTACGCTT+TGG | 0.358192 | 3_2:+4845750 | Msa0391940:CDS |
| TTAAAGCATCAGATGTTAAA+GGG | 0.367451 | 3_2:-4845800 | None:intergenic |
| GTTATGAACATGTTCTTTAG+TGG | 0.371547 | 3_2:+4847128 | Msa0391940:three_prime_UTR |
| GCTTTAAAGAAAGTTCTTAC+TGG | 0.374819 | 3_2:+4845816 | Msa0391940:CDS |
| GCATATTACCTCAACTCTAT+TGG | 0.377682 | 3_2:-4845075 | None:intergenic |
| TTAAAATTCAAGTATATTGT+TGG | 0.396178 | 3_2:+4847337 | Msa0391940:three_prime_UTR |
| TCAAGTATATTGTTGGCATA+TGG | 0.403219 | 3_2:+4847344 | Msa0391940:three_prime_UTR |
| AAGAATCTCACCTTATAAAC+AGG | 0.404591 | 3_2:-4847185 | None:intergenic |
| GCTGCTCTTGGCATTACATT+GGG | 0.408552 | 3_2:+4844205 | Msa0391940:CDS |
| TGCTGCTCTTGGCATTACAT+TGG | 0.419462 | 3_2:+4844204 | Msa0391940:CDS |
| ATTTAGCTTGAAAATTGAAA+AGG | 0.430969 | 3_2:-4843151 | None:intergenic |
| TTCGAAACTTTGAACGAAGA+TGG | 0.430983 | 3_2:+4843174 | Msa0391940:exon |
| CTCTTGTTTCCATTCTTCAC+AGG | 0.437303 | 3_2:+4843248 | Msa0391940:CDS |
| ACAGCATACTTTACAACATA+AGG | 0.448054 | 3_2:-4847211 | None:intergenic |
| GGAAGATGGCTATTACCAAT+TGG | 0.470067 | 3_2:+4843203 | Msa0391940:CDS |
| TCCTTTCACACTCAGAACTA+AGG | 0.471434 | 3_2:+4847055 | Msa0391940:CDS |
| ACACTCAGAACTAAGGTTGA+AGG | 0.480792 | 3_2:+4847062 | Msa0391940:CDS |
| TTGGGAGTATTTCCTATATG+TGG | 0.488852 | 3_2:+4844223 | Msa0391940:CDS |
| TTTAGCTTGAAAATTGAAAA+GGG | 0.491622 | 3_2:-4843150 | None:intergenic |
| TGAAGAGTACCTGTGAAGAA+TGG | 0.505109 | 3_2:-4843257 | None:intergenic |
| AATTACAACATACCACATAT+AGG | 0.509787 | 3_2:-4844235 | None:intergenic |
| AAACAGGTTCATAGAGATAG+AGG | 0.509858 | 3_2:+4847296 | Msa0391940:three_prime_UTR |
| AATTCACCAAAGCGTAGAAA+CGG | 0.510527 | 3_2:-4845756 | None:intergenic |
| ACCTTAGTTCTGAGTGTGAA+AGG | 0.513975 | 3_2:-4847056 | None:intergenic |
| GGAATGGCTATTGCATTGCT+TGG | 0.517080 | 3_2:+4845003 | Msa0391940:CDS |
| CACTGTATTCCTCTGCGGAA+TGG | 0.522128 | 3_2:+4844987 | Msa0391940:CDS |
| TTTGGTGAATTTATGTCTGG+CGG | 0.528238 | 3_2:+4845768 | Msa0391940:CDS |
| TTTGAACGAAGATGGCGAAT+GGG | 0.528659 | 3_2:+4843182 | Msa0391940:exon |
| GAAGATGGCGAATGGGAAGA+TGG | 0.532129 | 3_2:+4843189 | Msa0391940:exon |
| TTGGTGAATTTATGTCTGGC+GGG | 0.533407 | 3_2:+4845769 | Msa0391940:CDS |
| CTTTGAACGAAGATGGCGAA+TGG | 0.546126 | 3_2:+4843181 | Msa0391940:exon |
| AAGTTCGTGAGCATCATAGT+TGG | 0.557950 | 3_2:-4845042 | None:intergenic |
| TGAACTAGAATTCTGAACAA+TGG | 0.566355 | 3_2:-4846994 | None:intergenic |
| TATAGTGCTCCAAGAATGAA+AGG | 0.570927 | 3_2:-4846958 | None:intergenic |
| TCAGATGTTAAAGGGAAATG+AGG | 0.588588 | 3_2:-4845792 | None:intergenic |
| AGGAGCTGAACCAAATCAGT+TGG | 0.589478 | 3_2:+4844174 | Msa0391940:CDS |
| AGAGGTATAATTCAGAAGTA+CGG | 0.590091 | 3_2:+4847314 | Msa0391940:three_prime_UTR |
| TGGCGACGCCAATAGAGTTG+AGG | 0.614691 | 3_2:+4845067 | Msa0391940:CDS |
| CTGTGAAGAATGGAAACAAG+AGG | 0.624294 | 3_2:-4843247 | None:intergenic |
| CATATTAAGCGTTGTCCATG+CGG | 0.628787 | 3_2:+4845857 | Msa0391940:CDS |
| AGTTCTGAGTGTGAAAGGAG+TGG | 0.632827 | 3_2:-4847051 | None:intergenic |
| TACTGGTCAAGCTTCACACG+AGG | 0.668132 | 3_2:+4845833 | Msa0391940:CDS |
| GTTTGACAAATATAGTAACA+TGG | 0.686824 | 3_2:+4847093 | Msa0391940:exon |
| ATGCAATAGCCATTCCGCAG+AGG | 0.697698 | 3_2:-4844996 | None:intergenic |
| GGTGTCACTGTATTCCTCTG+CGG | 0.703627 | 3_2:+4844982 | Msa0391940:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTCTTTATATGAT+TGG | + | chr3_2:4844369-4844388 | Msa0391940:intron | 10.0% |
| !!! | ATATTGATAGTTTAATTATT+TGG | + | chr3_2:4845715-4845734 | Msa0391940:intron | 10.0% |
| !!! | AATTTTATTTCTGTAATGAT+TGG | + | chr3_2:4843348-4843367 | Msa0391940:intron | 15.0% |
| !! | TAAAGAAAAAAAAAACAAAC+TGG | - | chr3_2:4844363-4844382 | None:intergenic | 15.0% |
| !!! | AAATTATTTTGATTGTAACA+TGG | - | chr3_2:4845174-4845193 | None:intergenic | 15.0% |
| !!! | TTTTGAGTTTACATTATATA+TGG | + | chr3_2:4845512-4845531 | Msa0391940:intron | 15.0% |
| !!! | TTTGCTATTAGAATTTTAAT+AGG | - | chr3_2:4846098-4846117 | None:intergenic | 15.0% |
| !! | AAATTCTAATAGCAAATATT+AGG | + | chr3_2:4846102-4846121 | Msa0391940:intron | 15.0% |
| !! | TTAAAATTCAAGTATATTGT+TGG | + | chr3_2:4847337-4847356 | Msa0391940:three_prime_UTR | 15.0% |
| !! | TTATCACAGTTTGAAAATTT+AGG | - | chr3_2:4843122-4843141 | None:intergenic | 20.0% |
| !!! | TTTAGCTTGAAAATTGAAAA+GGG | - | chr3_2:4843153-4843172 | None:intergenic | 20.0% |
| !!! | ATTTAGCTTGAAAATTGAAA+AGG | - | chr3_2:4843154-4843173 | None:intergenic | 20.0% |
| !! | TTATCACAATAAACAAATAG+TGG | - | chr3_2:4843309-4843328 | None:intergenic | 20.0% |
| !!! | ATAATCAAAGTCAGTTTTAA+AGG | - | chr3_2:4843435-4843454 | None:intergenic | 20.0% |
| !!! | TGATTTTGATATGTTTTGTT+CGG | + | chr3_2:4843652-4843671 | Msa0391940:intron | 20.0% |
| !! | ATATATATCCAGGAAATTAT+GGG | - | chr3_2:4843969-4843988 | None:intergenic | 20.0% |
| !!! | TTATTTTAGCATATATATCC+AGG | - | chr3_2:4843979-4843998 | None:intergenic | 20.0% |
| !! | TTAGATATGAAATGTCTTTA+TGG | + | chr3_2:4844068-4844087 | Msa0391940:intron | 20.0% |
| !! | ATTGAATTACAGTTATCTTT+AGG | - | chr3_2:4844132-4844151 | None:intergenic | 20.0% |
| !! | TCATGAAATTAAGCTTAAAA+AGG | - | chr3_2:4844499-4844518 | None:intergenic | 20.0% |
| !!! | TTTTCTTAGATTTTCCTAAT+TGG | - | chr3_2:4845350-4845369 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGATAGAGAACTA+TGG | + | chr3_2:4845419-4845438 | Msa0391940:intron | 20.0% |
| !! | AAATCAACAGGAAAATATTA+TGG | - | chr3_2:4845897-4845916 | None:intergenic | 20.0% |
| !! | GATATGGTTAAAGAATAAAT+AGG | - | chr3_2:4846725-4846744 | None:intergenic | 20.0% |
| !!! | AAATCAAATACTTTAGGATA+TGG | - | chr3_2:4846741-4846760 | None:intergenic | 20.0% |
| !! | ACTATGTAACAATTAAAAAC+AGG | + | chr3_2:4847252-4847271 | Msa0391940:three_prime_UTR | 20.0% |
| !! | CTATGTAACAATTAAAAACA+GGG | + | chr3_2:4847253-4847272 | Msa0391940:three_prime_UTR | 20.0% |
| !! | TAAAACTGACTTTGATTATG+AGG | + | chr3_2:4843436-4843455 | Msa0391940:intron | 25.0% |
| !!! | TTCTTTGAAGAAAGTGATTT+TGG | + | chr3_2:4843509-4843528 | Msa0391940:intron | 25.0% |
| !!! | AAGTGATTTTGGTATCAAAA+AGG | + | chr3_2:4843520-4843539 | Msa0391940:intron | 25.0% |
| !!! | AGTGATTTTGGTATCAAAAA+GGG | + | chr3_2:4843521-4843540 | Msa0391940:intron | 25.0% |
| !! | TGTTTGTAAAAGTGTATGTT+TGG | + | chr3_2:4843585-4843604 | Msa0391940:intron | 25.0% |
| !!! | ATTTTGGTTAATCCAAAAGT+GGG | - | chr3_2:4843612-4843631 | None:intergenic | 25.0% |
| !!! | AATTTTGGTTAATCCAAAAG+TGG | - | chr3_2:4843613-4843632 | None:intergenic | 25.0% |
| ! | CATATATATCCAGGAAATTA+TGG | - | chr3_2:4843970-4843989 | None:intergenic | 25.0% |
| ! | TGATATCAAGCATAAATAAG+AGG | - | chr3_2:4844019-4844038 | None:intergenic | 25.0% |
| !!! | TTTTGCTATGTTTTTTTCAG+AGG | + | chr3_2:4844154-4844173 | Msa0391940:intron | 25.0% |
| ! | AATTACAACATACCACATAT+AGG | - | chr3_2:4844238-4844257 | None:intergenic | 25.0% |
| ! | TGGTTAATGATTATGCTAAA+TGG | - | chr3_2:4844343-4844362 | None:intergenic | 25.0% |
| ! | TTCTTTATATGATTGGACAT+TGG | + | chr3_2:4844376-4844395 | Msa0391940:intron | 25.0% |
| ! | TCTTTATATGATTGGACATT+GGG | + | chr3_2:4844377-4844396 | Msa0391940:intron | 25.0% |
| !! | TTTTTGTTCATGCTATAAGT+GGG | - | chr3_2:4844545-4844564 | None:intergenic | 25.0% |
| ! | TATATGGATGTGAAATATGT+CGG | + | chr3_2:4844915-4844934 | Msa0391940:intron | 25.0% |
| ! | TCTGCAATATGTTAAATATG+AGG | + | chr3_2:4844942-4844961 | Msa0391940:intron | 25.0% |
| ! | TTCTAATTTAATTGCATCCA+AGG | + | chr3_2:4845277-4845296 | Msa0391940:intron | 25.0% |
| !! | TTAAAGCATCAGATGTTAAA+GGG | - | chr3_2:4845803-4845822 | None:intergenic | 25.0% |
| !! | TTTAAAGCATCAGATGTTAA+AGG | - | chr3_2:4845804-4845823 | None:intergenic | 25.0% |
| ! | AGGAAAATATTATGGTATAG+TGG | - | chr3_2:4845889-4845908 | None:intergenic | 25.0% |
| !!! | TCCTGTTGATTTATTTTGAA+AGG | + | chr3_2:4845905-4845924 | Msa0391940:intron | 25.0% |
| ! | TCCTTTCAAAATAAATCAAC+AGG | - | chr3_2:4845909-4845928 | None:intergenic | 25.0% |
| ! | GCGATTATTTAATGCAAAAA+AGG | - | chr3_2:4846037-4846056 | None:intergenic | 25.0% |
| ! | TAATAGCAAATATTAGGTCT+TGG | + | chr3_2:4846108-4846127 | Msa0391940:intron | 25.0% |
| !!! | AAAATCTAATGGATTAGGAT+CGG | - | chr3_2:4846305-4846324 | None:intergenic | 25.0% |
| !! | ATCCTAATCCATTAGATTTT+AGG | + | chr3_2:4846305-4846324 | Msa0391940:intron | 25.0% |
| ! | AACTATCTTAAATCAGTTGT+CGG | - | chr3_2:4846476-4846495 | None:intergenic | 25.0% |
| ! | AAGAATAAATAGGACAATCA+GGG | - | chr3_2:4846715-4846734 | None:intergenic | 25.0% |
| ! | AAAGAATAAATAGGACAATC+AGG | - | chr3_2:4846716-4846735 | None:intergenic | 25.0% |
| !!! | TCCTAAAGTATTTGATTTTC+TGG | + | chr3_2:4846743-4846762 | Msa0391940:intron | 25.0% |
| ! | ACCAGAAAATCAAATACTTT+AGG | - | chr3_2:4846747-4846766 | None:intergenic | 25.0% |
| !!! | GTAACATAAAGGTATTTTTG+TGG | - | chr3_2:4846796-4846815 | None:intergenic | 25.0% |
| !! | ATCAAACTTTTGCAGTTATA+TGG | + | chr3_2:4846919-4846938 | Msa0391940:intron | 25.0% |
| !! | TCAAACTTTTGCAGTTATAT+GGG | + | chr3_2:4846920-4846939 | Msa0391940:intron | 25.0% |
| ! | GTTTGACAAATATAGTAACA+TGG | + | chr3_2:4847093-4847112 | Msa0391940:exon | 25.0% |
| !!! | CATCGATTTGTAAAAATAAC+AGG | - | chr3_2:4847443-4847462 | None:intergenic | 25.0% |
| GGTTATATGTGATCTGTTTA+TGG | + | chr3_2:4843369-4843388 | Msa0391940:intron | 30.0% | |
| TGACTTTGATTATGAGGTTT+AGG | + | chr3_2:4843442-4843461 | Msa0391940:intron | 30.0% | |
| GACTTTGATTATGAGGTTTA+GGG | + | chr3_2:4843443-4843462 | Msa0391940:intron | 30.0% | |
| ACTTTGATTATGAGGTTTAG+GGG | + | chr3_2:4843444-4843463 | Msa0391940:intron | 30.0% | |
| ! | GGATTAACCAAAATTGATTC+TGG | + | chr3_2:4843618-4843637 | Msa0391940:intron | 30.0% |
| ! | TTAACCAAAATTGATTCTGG+AGG | + | chr3_2:4843621-4843640 | Msa0391940:intron | 30.0% |
| AGTGATTTATGTTTGGACTT+TGG | - | chr3_2:4843801-4843820 | None:intergenic | 30.0% | |
| AAGCTGAAGTGATTTATGTT+TGG | - | chr3_2:4843808-4843827 | None:intergenic | 30.0% | |
| !! | TCACTTTTAGAAGTTCTAAC+AGG | - | chr3_2:4843894-4843913 | None:intergenic | 30.0% |
| ! | AAGTTGTGACGTTTTTCTTT+TGG | + | chr3_2:4844096-4844115 | Msa0391940:intron | 30.0% |
| ATAAATGACGGTATAGTTCA+AGG | - | chr3_2:4844274-4844293 | None:intergenic | 30.0% | |
| AACTATACCGTCATTTATGT+AGG | + | chr3_2:4844276-4844295 | Msa0391940:intron | 30.0% | |
| TGCAAATACTAAACAAGACA+TGG | - | chr3_2:4844319-4844338 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr3_2:4844403-4844422 | None:intergenic | 30.0% | |
| ! | GTTTTTGTTCATGCTATAAG+TGG | - | chr3_2:4844546-4844565 | None:intergenic | 30.0% |
| GAATCATACAATGTCATAAC+TGG | - | chr3_2:4844668-4844687 | None:intergenic | 30.0% | |
| ! | AAATTTTTCTTAGCTGTGGT+TGG | - | chr3_2:4844697-4844716 | None:intergenic | 30.0% |
| ! | ACAGAAATTTTTCTTAGCTG+TGG | - | chr3_2:4844701-4844720 | None:intergenic | 30.0% |
| AAAAGAGTTGTAACTGTGTA+CGG | + | chr3_2:4844795-4844814 | Msa0391940:intron | 30.0% | |
| TAAGTGAAAGAAAGTAAGTG+CGG | + | chr3_2:4844866-4844885 | Msa0391940:intron | 30.0% | |
| ATTACGATTCACAAAGAGAA+TGG | - | chr3_2:4845135-4845154 | None:intergenic | 30.0% | |
| ! | TCTTTACGATCCATTTTGTT+AGG | + | chr3_2:4845217-4845236 | Msa0391940:intron | 30.0% |
| TAATTTAATTGCATCCAAGG+AGG | + | chr3_2:4845280-4845299 | Msa0391940:intron | 30.0% | |
| CTTCCATTTGTTCTACTTAT+CGG | - | chr3_2:4845322-4845341 | None:intergenic | 30.0% | |
| ! | GATTGTTGTTGTTAAATCCT+AGG | + | chr3_2:4845487-4845506 | Msa0391940:intron | 30.0% |
| AATGTAAACTCAAAACTCCT+AGG | - | chr3_2:4845507-4845526 | None:intergenic | 30.0% | |
| AAACATTGACATGAGAACAA+GGG | - | chr3_2:4845635-4845654 | None:intergenic | 30.0% | |
| !! | GCTTTAAAGAAAGTTCTTAC+TGG | + | chr3_2:4845816-4845835 | Msa0391940:CDS | 30.0% |
| ! | TATTTTATATCGTAGAGCGT+AGG | + | chr3_2:4846058-4846077 | Msa0391940:intron | 30.0% |
| TGATCTCAGATTAATGGTTT+GGG | - | chr3_2:4846178-4846197 | None:intergenic | 30.0% | |
| !! | AAATCTAATGGATTAGGATC+GGG | - | chr3_2:4846304-4846323 | None:intergenic | 30.0% |
| ! | AATAGGCATTGTTTATGACT+TGG | + | chr3_2:4846381-4846400 | Msa0391940:intron | 30.0% |
| AGATAGTTTATGACTCCATT+TGG | + | chr3_2:4846488-4846507 | Msa0391940:intron | 30.0% | |
| ! | TATGACTCCATTTGGATTTT+AGG | + | chr3_2:4846496-4846515 | Msa0391940:intron | 30.0% |
| ATTAGATATAGCACCTAACA+GGG | - | chr3_2:4846595-4846614 | None:intergenic | 30.0% | |
| GTGCTATATCTAATCTATGT+AGG | + | chr3_2:4846601-4846620 | Msa0391940:intron | 30.0% | |
| CTAATGGTAAACCATCATAT+AGG | + | chr3_2:4846637-4846656 | Msa0391940:intron | 30.0% | |
| TTCATTAAGTGGCAAAATCT+CGG | - | chr3_2:4846664-4846683 | None:intergenic | 30.0% | |
| ATCGTAAGTTCGTAACATAA+AGG | - | chr3_2:4846807-4846826 | None:intergenic | 30.0% | |
| TGAACTAGAATTCTGAACAA+TGG | - | chr3_2:4846997-4847016 | None:intergenic | 30.0% | |
| GTTATGAACATGTTCTTTAG+TGG | + | chr3_2:4847128-4847147 | Msa0391940:three_prime_UTR | 30.0% | |
| ! | AAGACTTGTTCCTGTTTATA+AGG | + | chr3_2:4847175-4847194 | Msa0391940:three_prime_UTR | 30.0% |
| AAGAATCTCACCTTATAAAC+AGG | - | chr3_2:4847188-4847207 | None:intergenic | 30.0% | |
| ACAGCATACTTTACAACATA+AGG | - | chr3_2:4847214-4847233 | None:intergenic | 30.0% | |
| TTCAAACTCTTCTGATAAAC+AGG | + | chr3_2:4847280-4847299 | Msa0391940:three_prime_UTR | 30.0% | |
| ! | AGAGGTATAATTCAGAAGTA+CGG | + | chr3_2:4847314-4847333 | Msa0391940:three_prime_UTR | 30.0% |
| TCAAGTATATTGTTGGCATA+TGG | + | chr3_2:4847344-4847363 | Msa0391940:three_prime_UTR | 30.0% | |
| TTCGAAACTTTGAACGAAGA+TGG | + | chr3_2:4843174-4843193 | Msa0391940:exon | 35.0% | |
| !!! | GATTTTCTTCTGGAACCAAT+TGG | - | chr3_2:4843221-4843240 | None:intergenic | 35.0% |
| ! | TGGATTCTATCACTTGTTGA+AGG | + | chr3_2:4843389-4843408 | Msa0391940:intron | 35.0% |
| !! | TTGGGAGTATTTCCTATATG+TGG | + | chr3_2:4844223-4844242 | Msa0391940:CDS | 35.0% |
| CTGCATTCCTACATAAATGA+CGG | - | chr3_2:4844286-4844305 | None:intergenic | 35.0% | |
| TACTAAACAAGACATGGTTG+CGG | - | chr3_2:4844313-4844332 | None:intergenic | 35.0% | |
| TTAAGCTGTTTGTCCAAACA+GGG | + | chr3_2:4844642-4844661 | Msa0391940:intron | 35.0% | |
| CACATCCATATATGCTTTCT+CGG | - | chr3_2:4844907-4844926 | None:intergenic | 35.0% | |
| ! | GAGGCTAATGTTTTGCAAAT+AGG | + | chr3_2:4844961-4844980 | Msa0391940:intron | 35.0% |
| TATGATGCTCACGAACTTTA+TGG | + | chr3_2:4845047-4845066 | Msa0391940:CDS | 35.0% | |
| GCATATTACCTCAACTCTAT+TGG | - | chr3_2:4845078-4845097 | None:intergenic | 35.0% | |
| ! | TTACGATCCATTTTGTTAGG+AGG | + | chr3_2:4845220-4845239 | Msa0391940:intron | 35.0% |
| AAATGGAAGACAGTCCAATT+AGG | + | chr3_2:4845333-4845352 | Msa0391940:intron | 35.0% | |
| ACAATCAAACCATCTTCACT+AGG | - | chr3_2:4845473-4845492 | None:intergenic | 35.0% | |
| CAAACATTGACATGAGAACA+AGG | - | chr3_2:4845636-4845655 | None:intergenic | 35.0% | |
| AATTCACCAAAGCGTAGAAA+CGG | - | chr3_2:4845759-4845778 | None:intergenic | 35.0% | |
| TTTGGTGAATTTATGTCTGG+CGG | + | chr3_2:4845768-4845787 | Msa0391940:CDS | 35.0% | |
| TCAGATGTTAAAGGGAAATG+AGG | - | chr3_2:4845795-4845814 | None:intergenic | 35.0% | |
| ! | ACCAAATGCGCATTTTACAT+AGG | + | chr3_2:4845984-4846003 | Msa0391940:intron | 35.0% |
| ACCTATGTAAAATGCGCATT+TGG | - | chr3_2:4845988-4846007 | None:intergenic | 35.0% | |
| CTGATCTCAGATTAATGGTT+TGG | - | chr3_2:4846179-4846198 | None:intergenic | 35.0% | |
| ! | ACCATTAATCTGAGATCAGA+CGG | + | chr3_2:4846180-4846199 | Msa0391940:intron | 35.0% |
| AATTGAGATCAAAAACTGCG+TGG | + | chr3_2:4846265-4846284 | Msa0391940:intron | 35.0% | |
| !! | GGCCTAAAATCTAATGGATT+AGG | - | chr3_2:4846310-4846329 | None:intergenic | 35.0% |
| GAATCAGGCCTAAAATCTAA+TGG | - | chr3_2:4846316-4846335 | None:intergenic | 35.0% | |
| ACAATGCCTATTACAAAGCT+TGG | - | chr3_2:4846373-4846392 | None:intergenic | 35.0% | |
| ! | CTGCACAAAACTAACTTGTA+CGG | + | chr3_2:4846536-4846555 | Msa0391940:intron | 35.0% |
| ! | AGCTTTATAAACTCCCTGTT+AGG | + | chr3_2:4846579-4846598 | Msa0391940:intron | 35.0% |
| GATTAGATATAGCACCTAAC+AGG | - | chr3_2:4846596-4846615 | None:intergenic | 35.0% | |
| ! | AGGACTTGAGTCTTTTCTAA+TGG | + | chr3_2:4846621-4846640 | Msa0391940:intron | 35.0% |
| AAAATCTCGGTCCTATATGA+TGG | - | chr3_2:4846651-4846670 | None:intergenic | 35.0% | |
| ! | CAATTTTCCTTTTGCAATGC+AGG | + | chr3_2:4846827-4846846 | Msa0391940:intron | 35.0% |
| ! | AACTTTTGCAGTTATATGGG+TGG | + | chr3_2:4846923-4846942 | Msa0391940:intron | 35.0% |
| TATAGTGCTCCAAGAATGAA+AGG | - | chr3_2:4846961-4846980 | None:intergenic | 35.0% | |
| !! | TTTTGGACTTAAAGGTACAC+TGG | - | chr3_2:4847028-4847047 | None:intergenic | 35.0% |
| !!! | AGTGGCTTTTTTGGACTTAA+AGG | - | chr3_2:4847036-4847055 | None:intergenic | 35.0% |
| AAACAGGTTCATAGAGATAG+AGG | + | chr3_2:4847296-4847315 | Msa0391940:three_prime_UTR | 35.0% | |
| TTTGAACGAAGATGGCGAAT+GGG | + | chr3_2:4843182-4843201 | Msa0391940:exon | 40.0% | |
| GGAAGATGGCTATTACCAAT+TGG | + | chr3_2:4843203-4843222 | Msa0391940:CDS | 40.0% | |
| !!! | GAGGATCACTGATTTTCTTC+TGG | - | chr3_2:4843231-4843250 | None:intergenic | 40.0% |
| CTGTGAAGAATGGAAACAAG+AGG | - | chr3_2:4843250-4843269 | None:intergenic | 40.0% | |
| ! | CTCTTGTTTCCATTCTTCAC+AGG | + | chr3_2:4843248-4843267 | Msa0391940:CDS | 40.0% |
| !! | TGAAGAGTACCTGTGAAGAA+TGG | - | chr3_2:4843260-4843279 | None:intergenic | 40.0% |
| ! | TGTATGTTTGGTCCCACTTT+TGG | + | chr3_2:4843597-4843616 | Msa0391940:intron | 40.0% |
| ! | TGCACCTCCAGAATCAATTT+TGG | - | chr3_2:4843628-4843647 | None:intergenic | 40.0% |
| TTGTTCGGCTAGAGAAGAAT+TGG | + | chr3_2:4843667-4843686 | Msa0391940:intron | 40.0% | |
| CAAATGTGCCCATAATTTCC+TGG | + | chr3_2:4843958-4843977 | Msa0391940:intron | 40.0% | |
| ATGACGGTATAGTTCAAGGT+GGG | - | chr3_2:4844270-4844289 | None:intergenic | 40.0% | |
| AATGACGGTATAGTTCAAGG+TGG | - | chr3_2:4844271-4844290 | None:intergenic | 40.0% | |
| ACTAAACAAGACATGGTTGC+GGG | - | chr3_2:4844312-4844331 | None:intergenic | 40.0% | |
| GTGGGTTTCATAAGCTATCT+TGG | - | chr3_2:4844527-4844546 | None:intergenic | 40.0% | |
| GTTAAGCTGTTTGTCCAAAC+AGG | + | chr3_2:4844641-4844660 | Msa0391940:intron | 40.0% | |
| ! | AGGATCCGAGAAAGCATATA+TGG | + | chr3_2:4844899-4844918 | Msa0391940:intron | 40.0% |
| AAGTTCGTGAGCATCATAGT+TGG | - | chr3_2:4845045-4845064 | None:intergenic | 40.0% | |
| ! | GATCCATTTTGTTAGGAGGA+TGG | + | chr3_2:4845224-4845243 | Msa0391940:intron | 40.0% |
| AAGCCATCCTCCTAACAAAA+TGG | - | chr3_2:4845230-4845249 | None:intergenic | 40.0% | |
| CCATTTGTTCTACTTATCGG+CGG | - | chr3_2:4845319-4845338 | None:intergenic | 40.0% | |
| GACACAGGGATGTAAAATTG+TGG | - | chr3_2:4845559-4845578 | None:intergenic | 40.0% | |
| CAATGGCACTAAAAGACACA+GGG | - | chr3_2:4845573-4845592 | None:intergenic | 40.0% | |
| TCAATGGCACTAAAAGACAC+AGG | - | chr3_2:4845574-4845593 | None:intergenic | 40.0% | |
| GTGGCATATCAATGAGTCAA+TGG | - | chr3_2:4845590-4845609 | None:intergenic | 40.0% | |
| ATTGTTCCGTTTCTACGCTT+TGG | + | chr3_2:4845750-4845769 | Msa0391940:CDS | 40.0% | |
| CGCTTTGGTGAATTTATGTC+TGG | + | chr3_2:4845765-4845784 | Msa0391940:CDS | 40.0% | |
| TTGGTGAATTTATGTCTGGC+GGG | + | chr3_2:4845769-4845788 | Msa0391940:CDS | 40.0% | |
| ! | CATATTAAGCGTTGTCCATG+CGG | + | chr3_2:4845857-4845876 | Msa0391940:CDS | 40.0% |
| TTTATATCGTAGAGCGTAGG+TGG | + | chr3_2:4846061-4846080 | Msa0391940:intron | 40.0% | |
| ACCGTCTGATCTCAGATTAA+TGG | - | chr3_2:4846184-4846203 | None:intergenic | 40.0% | |
| ! | ACCTTACACATCGGTTAAGT+GGG | - | chr3_2:4846342-4846361 | None:intergenic | 40.0% |
| ! | TGAGTGCCAAGCTTTGTAAT+AGG | + | chr3_2:4846364-4846383 | Msa0391940:intron | 40.0% |
| TAGGCATGAGAGGATATACT+AGG | - | chr3_2:4846413-4846432 | None:intergenic | 40.0% | |
| ATGCCTAACACTATTGGACA+TGG | + | chr3_2:4846426-4846445 | Msa0391940:intron | 40.0% | |
| ACACCATGTCCAATAGTGTT+AGG | - | chr3_2:4846432-4846451 | None:intergenic | 40.0% | |
| GACATGGTGTGTGGATAATA+TGG | + | chr3_2:4846442-4846461 | Msa0391940:intron | 40.0% | |
| ATGGTGTGTGGATAATATGG+TGG | + | chr3_2:4846445-4846464 | Msa0391940:intron | 40.0% | |
| CGTTAGGCCTAAAATCCAAA+TGG | - | chr3_2:4846506-4846525 | None:intergenic | 40.0% | |
| ! | CAAAACTAACTTGTACGGTG+AGG | + | chr3_2:4846541-4846560 | Msa0391940:intron | 40.0% |
| ACAGGGAGTTTATAAAGCTC+TGG | - | chr3_2:4846578-4846597 | None:intergenic | 40.0% | |
| GATTGCGTGCATTCATTAAG+TGG | - | chr3_2:4846675-4846694 | None:intergenic | 40.0% | |
| CACAAATCCTGCATTGCAAA+AGG | - | chr3_2:4846837-4846856 | None:intergenic | 40.0% | |
| !!! | TGTGAAAGGAGTGGCTTTTT+TGG | - | chr3_2:4847045-4847064 | None:intergenic | 40.0% |
| TCCTTTCACACTCAGAACTA+AGG | + | chr3_2:4847055-4847074 | Msa0391940:CDS | 40.0% | |
| !! | ACCTTAGTTCTGAGTGTGAA+AGG | - | chr3_2:4847059-4847078 | None:intergenic | 40.0% |
| ACACTCAGAACTAAGGTTGA+AGG | + | chr3_2:4847062-4847081 | Msa0391940:CDS | 40.0% | |
| CTTTGAACGAAGATGGCGAA+TGG | + | chr3_2:4843181-4843200 | Msa0391940:exon | 45.0% | |
| AGGAGCTGAACCAAATCAGT+TGG | + | chr3_2:4844174-4844193 | Msa0391940:CDS | 45.0% | |
| GCAGAGAAAGCCAACTGATT+TGG | - | chr3_2:4844187-4844206 | None:intergenic | 45.0% | |
| TGCTGCTCTTGGCATTACAT+TGG | + | chr3_2:4844204-4844223 | Msa0391940:CDS | 45.0% | |
| GCTGCTCTTGGCATTACATT+GGG | + | chr3_2:4844205-4844224 | Msa0391940:CDS | 45.0% | |
| CTAAACAAGACATGGTTGCG+GGG | - | chr3_2:4844311-4844330 | None:intergenic | 45.0% | |
| ATGTCATAACTGGCCCTGTT+TGG | - | chr3_2:4844658-4844677 | None:intergenic | 45.0% | |
| GGAATGGCTATTGCATTGCT+TGG | + | chr3_2:4845003-4845022 | Msa0391940:CDS | 45.0% | |
| GATGGCTTCTTAGTTTCTCG+TGG | + | chr3_2:4845242-4845261 | Msa0391940:intron | 45.0% | |
| CATCCAAGGAGGATGAATAG+AGG | + | chr3_2:4845291-4845310 | Msa0391940:intron | 45.0% | |
| CCGCCGATAAGTAGAACAAA+TGG | + | chr3_2:4845316-4845335 | Msa0391940:intron | 45.0% | |
| TCATTCCTGCCTAGTGAAGA+TGG | + | chr3_2:4845461-4845480 | Msa0391940:intron | 45.0% | |
| TCAAACCATCTTCACTAGGC+AGG | - | chr3_2:4845469-4845488 | None:intergenic | 45.0% | |
| CTCATTGATATGCCACGTCT+TGG | + | chr3_2:4845594-4845613 | Msa0391940:intron | 45.0% | |
| ATGCCACGTCTTGGACATAT+AGG | + | chr3_2:4845603-4845622 | Msa0391940:intron | 45.0% | |
| GAACCTATATGTCCAAGACG+TGG | - | chr3_2:4845609-4845628 | None:intergenic | 45.0% | |
| GATCGTTTGATCAAACTGCG+TGG | - | chr3_2:4846156-4846175 | None:intergenic | 45.0% | |
| ! | CCTTACACATCGGTTAAGTG+GGG | - | chr3_2:4846341-4846360 | None:intergenic | 45.0% |
| ! | CACCTTACACATCGGTTAAG+TGG | - | chr3_2:4846343-4846362 | None:intergenic | 45.0% |
| CACTTAACCGATGTGTAAGG+TGG | + | chr3_2:4846341-4846360 | Msa0391940:intron | 45.0% | |
| CCAATAGTGTTAGGCATGAG+AGG | - | chr3_2:4846423-4846442 | None:intergenic | 45.0% | |
| CCTCTCATGCCTAACACTAT+TGG | + | chr3_2:4846420-4846439 | Msa0391940:intron | 45.0% | |
| ACACTATTGGACATGGTGTG+TGG | + | chr3_2:4846433-4846452 | Msa0391940:intron | 45.0% | |
| GTGCAGTTATCTGTTGCGTT+AGG | - | chr3_2:4846522-4846541 | None:intergenic | 45.0% | |
| GCTGCATCACCTTTCATTCT+TGG | + | chr3_2:4846949-4846968 | Msa0391940:CDS | 45.0% | |
| !! | AGTTCTGAGTGTGAAAGGAG+TGG | - | chr3_2:4847054-4847073 | None:intergenic | 45.0% |
| GAAGATGGCGAATGGGAAGA+TGG | + | chr3_2:4843189-4843208 | Msa0391940:exon | 50.0% | |
| ! | TTGGCTTTCTCTGCTGCTCT+TGG | + | chr3_2:4844193-4844212 | Msa0391940:CDS | 50.0% |
| GATTGGACATTGGGCCTGTT+TGG | + | chr3_2:4844386-4844405 | Msa0391940:intron | 50.0% | |
| TTTCTCGGATCCTCTACAGC+AGG | - | chr3_2:4844892-4844911 | None:intergenic | 50.0% | |
| !! | GGTGTCACTGTATTCCTCTG+CGG | + | chr3_2:4844982-4845001 | Msa0391940:intron | 50.0% |
| CACTGTATTCCTCTGCGGAA+TGG | + | chr3_2:4844987-4845006 | Msa0391940:CDS | 50.0% | |
| ATGCAATAGCCATTCCGCAG+AGG | - | chr3_2:4844999-4845018 | None:intergenic | 50.0% | |
| GAGCCTCTATTCATCCTCCT+TGG | - | chr3_2:4845297-4845316 | None:intergenic | 50.0% | |
| TACTGGTCAAGCTTCACACG+AGG | + | chr3_2:4845833-4845852 | Msa0391940:CDS | 50.0% | |
| ! | TTAAGCGTTGTCCATGCGGT+AGG | + | chr3_2:4845861-4845880 | Msa0391940:intron | 50.0% |
| GTAGAGCGTAGGTGGTTGTT+TGG | + | chr3_2:4846069-4846088 | Msa0391940:intron | 50.0% | |
| GGAATTGCTGCAGGCAATCT+GGG | - | chr3_2:4846135-4846154 | None:intergenic | 50.0% | |
| TGGAATTGCTGCAGGCAATC+TGG | - | chr3_2:4846136-4846155 | None:intergenic | 50.0% | |
| AAACTGCGTGGAATTGCTGC+AGG | - | chr3_2:4846144-4846163 | None:intergenic | 50.0% | |
| CGGTTAAGTGGGGTTGAATC+AGG | - | chr3_2:4846331-4846350 | None:intergenic | 50.0% | |
| CCCCACTTAACCGATGTGTA+AGG | + | chr3_2:4846338-4846357 | Msa0391940:intron | 50.0% | |
| GCACTCACCACCTTACACAT+CGG | - | chr3_2:4846351-4846370 | None:intergenic | 50.0% | |
| AACTTGTACGGTGAGGACTG+AGG | + | chr3_2:4846548-4846567 | Msa0391940:intron | 50.0% | |
| ! | GCACGCAATCTGTTTTCCTG+TGG | + | chr3_2:4846685-4846704 | Msa0391940:intron | 50.0% |
| GGACAATCAGGGAATACCAC+AGG | - | chr3_2:4846704-4846723 | None:intergenic | 50.0% | |
| GATCCTCTACAGCAGCTGCA+TGG | + | chr3_2:4844817-4844836 | Msa0391940:intron | 55.0% | |
| TGGCGACGCCAATAGAGTTG+AGG | + | chr3_2:4845067-4845086 | Msa0391940:CDS | 55.0% | |
| GTATAGTGGCACCTACCGCA+TGG | - | chr3_2:4845875-4845894 | None:intergenic | 55.0% | |
| GCACCATGCAGCTGCTGTAG+AGG | - | chr3_2:4844823-4844842 | None:intergenic | 60.0% | |
| GCAGCACACTGCACAGCTGT+TGG | + | chr3_2:4844841-4844860 | Msa0391940:intron | 60.0% | |
| GTAAGTGCGGCCTGCTGTAG+AGG | + | chr3_2:4844879-4844898 | Msa0391940:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 4843058 | 4847514 | 4843058 | ID=Msa0391940;Name=Msa0391940 |
| chr3_2 | mRNA | 4843058 | 4847514 | 4843058 | ID=Msa0391940-mRNA-1;Parent=Msa0391940;Name=Msa0391940-mRNA-1;_AED=0.08;_eAED=0.08;_QI=112|1|1|1|0.8|0.66|6|416|183 |
| chr3_2 | exon | 4843058 | 4843076 | 4843058 | ID=Msa0391940-mRNA-1:exon:1127;Parent=Msa0391940-mRNA-1 |
| chr3_2 | exon | 4843100 | 4843269 | 4843100 | ID=Msa0391940-mRNA-1:exon:1128;Parent=Msa0391940-mRNA-1 |
| chr3_2 | exon | 4844174 | 4844244 | 4844174 | ID=Msa0391940-mRNA-1:exon:1129;Parent=Msa0391940-mRNA-1 |
| chr3_2 | exon | 4844983 | 4845088 | 4844983 | ID=Msa0391940-mRNA-1:exon:1130;Parent=Msa0391940-mRNA-1 |
| chr3_2 | exon | 4845746 | 4845878 | 4845746 | ID=Msa0391940-mRNA-1:exon:1131;Parent=Msa0391940-mRNA-1 |
| chr3_2 | exon | 4846934 | 4847514 | 4846934 | ID=Msa0391940-mRNA-1:exon:1132;Parent=Msa0391940-mRNA-1 |
| chr3_2 | five_prime_UTR | 4843058 | 4843076 | 4843058 | ID=Msa0391940-mRNA-1:five_prime_utr;Parent=Msa0391940-mRNA-1 |
| chr3_2 | five_prime_UTR | 4843100 | 4843192 | 4843100 | ID=Msa0391940-mRNA-1:five_prime_utr;Parent=Msa0391940-mRNA-1 |
| chr3_2 | CDS | 4843193 | 4843269 | 4843193 | ID=Msa0391940-mRNA-1:cds;Parent=Msa0391940-mRNA-1 |
| chr3_2 | CDS | 4844174 | 4844244 | 4844174 | ID=Msa0391940-mRNA-1:cds;Parent=Msa0391940-mRNA-1 |
| chr3_2 | CDS | 4844983 | 4845088 | 4844983 | ID=Msa0391940-mRNA-1:cds;Parent=Msa0391940-mRNA-1 |
| chr3_2 | CDS | 4845746 | 4845878 | 4845746 | ID=Msa0391940-mRNA-1:cds;Parent=Msa0391940-mRNA-1 |
| chr3_2 | CDS | 4846934 | 4847098 | 4846934 | ID=Msa0391940-mRNA-1:cds;Parent=Msa0391940-mRNA-1 |
| chr3_2 | three_prime_UTR | 4847099 | 4847514 | 4847099 | ID=Msa0391940-mRNA-1:three_prime_utr;Parent=Msa0391940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
