AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0345270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0345270 MtrunA17_Chr3g0077801 93.750 352 22 0 384 735 1 352 0.0 687
Msa0345270 MtrunA17_Chr3g0077801 60.632 348 87 3 6 303 4 351 1.88e-136 406
Msa0345270 MtrunA17_Chr3g0077901 80.114 352 20 3 1 302 19 370 0.0 544
Msa0345270 MtrunA17_Chr3g0077901 69.034 352 109 0 380 731 17 368 1.39e-177 512
Msa0345270 MtrunA17_Chr3g0077851 73.494 332 88 0 400 731 1 332 1.00e-176 508
Msa0345270 MtrunA17_Chr3g0077851 76.647 334 28 3 19 302 1 334 2.21e-173 499
Msa0345270 MtrunA17_Chr4g0075971 60.000 435 134 4 303 732 200 599 5.80e-165 488
Msa0345270 MtrunA17_Chr4g0075971 58.239 352 95 5 1 302 251 600 7.97e-117 364
Msa0345270 MtrunA17_Chr6g0488101 48.747 439 187 8 303 732 43 452 1.20e-131 397
Msa0345270 MtrunA17_Chr6g0488101 51.117 358 118 6 1 302 97 453 1.40e-103 325
Msa0345270 MtrunA17_Chr6g0488271 48.519 439 188 8 303 732 3 412 7.82e-131 394
Msa0345270 MtrunA17_Chr6g0488271 51.117 358 118 6 1 302 57 413 2.59e-104 325
Msa0345270 MtrunA17_Chr3g0112311 57.263 358 140 4 384 732 1 354 2.47e-128 385
Msa0345270 MtrunA17_Chr3g0112311 52.809 356 111 6 4 303 2 356 8.30e-102 317
Msa0345270 MtrunA17_Chr3g0093911 56.374 353 144 5 384 732 1 347 1.28e-120 365
Msa0345270 MtrunA17_Chr3g0093911 46.724 351 131 6 4 302 2 348 3.69e-83 268
Msa0345270 MtrunA17_Chr7g0252101 50.229 436 163 10 303 732 42 429 2.97e-119 365
Msa0345270 MtrunA17_Chr7g0252101 47.025 353 124 10 5 302 86 430 7.46e-78 256
Msa0345270 MtrunA17_Chr1g0207351 56.338 355 138 6 388 732 16 363 6.30e-118 358
Msa0345270 MtrunA17_Chr1g0207351 49.425 348 115 7 12 302 21 364 7.66e-88 280
Msa0345270 MtrunA17_Chr7g0243331 56.105 344 147 4 390 732 7 347 4.40e-117 356
Msa0345270 MtrunA17_Chr7g0243331 46.532 346 133 6 7 302 5 348 2.97e-81 263
Msa0345270 MtrunA17_Chr6g0452641 56.494 308 122 3 434 732 33 337 5.96e-102 316
Msa0345270 MtrunA17_Chr6g0452641 45.970 335 120 8 28 302 5 338 6.63e-69 229
Msa0345270 MtrunA17_Chr1g0209051 58.209 268 104 3 469 732 5 268 1.70e-91 286
Msa0345270 MtrunA17_Chr1g0209051 43.321 277 96 4 79 302 1 269 2.85e-56 193
Msa0345270 MtrunA17_Chr3g0122991 47.352 321 109 4 389 699 5 275 1.71e-87 276
Msa0345270 MtrunA17_Chr3g0122991 46.053 304 94 6 5 268 2 275 3.35e-70 231
Msa0345270 MtrunA17_Chr3g0123471 57.034 263 107 4 466 727 2 259 4.12e-83 264
Msa0345270 MtrunA17_Chr3g0123471 45.977 261 96 5 79 296 1 259 2.58e-57 196
Msa0345270 MtrunA17_Chr7g0243391 52.336 214 100 1 380 593 14 225 1.02e-59 201
Msa0345270 MtrunA17_Chr7g0243391 47.847 209 86 2 2 187 17 225 7.56e-43 155
Msa0345270 MtrunA17_Chr1g0202841 54.802 177 76 2 559 732 1 176 9.87e-54 183
Msa0345270 MtrunA17_Chr1g0202841 42.373 177 73 2 154 302 2 177 3.44e-32 123
Msa0345270 MtrunA17_Chr4g0075861 51.980 202 69 2 303 504 200 373 2.47e-50 180
Msa0345270 MtrunA17_Chr4g0075861 67.480 123 35 1 1 118 251 373 2.48e-40 152
Msa0345270 MtrunA17_Chr6g0486591 51.282 156 67 3 586 732 1 156 3.38e-43 153
Msa0345270 MtrunA17_Chr6g0486591 42.675 157 56 4 180 302 1 157 8.27e-28 110
Msa0345270 MtrunA17_Chr1g0196231 52.632 152 67 3 376 526 219 366 8.47e-41 153
Msa0345270 MtrunA17_Chr1g0196231 55.556 144 56 3 2 140 226 366 6.68e-38 145
Msa0345270 MtrunA17_Chr3g0077811 93.671 79 5 0 303 381 42 120 8.85e-36 131
Msa0345270 MtrunA17_Chr1g0206951 59.292 113 40 2 6 112 2 114 1.92e-35 130
Msa0345270 MtrunA17_Chr1g0206951 53.097 113 52 1 387 498 2 114 8.07e-32 120
Msa0345270 MtrunA17_Chr1g0187941 53.488 129 57 1 565 690 7 135 7.25e-33 123
Msa0345270 MtrunA17_Chr1g0187941 41.085 129 48 1 159 259 7 135 1.93e-19 85.1
Msa0345270 MtrunA17_Chr1g0209191 56.250 96 38 1 641 732 1 96 5.23e-28 108
Msa0345270 MtrunA17_Chr1g0209191 40.506 79 35 2 232 302 23 97 9.08e-11 59.3
Msa0345270 MtrunA17_Chr7g0238781 43.284 134 74 2 416 549 27 158 2.62e-26 105
Msa0345270 MtrunA17_Chr7g0238781 43.411 129 68 2 35 159 27 154 8.15e-23 95.9
Msa0345270 MtrunA17_Chr6g0459061 27.797 295 205 6 396 688 22 310 1.96e-25 108
Msa0345270 MtrunA17_Chr6g0459061 24.597 248 163 5 15 239 22 268 7.09e-16 80.1
Msa0345270 MtrunA17_Chr3g0077881 77.049 61 13 1 303 362 37 97 5.75e-24 99.4
Msa0345270 MtrunA17_Chr1g0196241 68.056 72 22 1 632 702 3 74 1.04e-23 95.9
Msa0345270 MtrunA17_Chr3g0077891 80.328 61 11 1 303 362 37 97 1.98e-20 89.4
Msa0345270 MtrunA17_Chr3g0077911 70.690 58 17 0 298 355 28 85 8.16e-20 87.0
Msa0345270 MtrunA17_Chr3g0077941 80.000 60 12 0 303 362 37 96 1.81e-19 86.7
Msa0345270 MtrunA17_Chr3g0077861 70.370 54 16 0 302 355 32 85 7.62e-18 81.6
Msa0345270 MtrunA17_Chr1g0209061 57.407 54 22 1 371 423 54 107 2.36e-14 69.7
Msa0345270 MtrunA17_Chr1g0209061 70.732 41 12 0 2 42 67 107 2.73e-13 66.6
Msa0345270 MtrunA17_Chr1g0205811 56.364 55 22 1 303 357 42 94 3.11e-12 64.3
Msa0345270 MtrunA17_Chr1g0205821 61.111 54 19 1 303 356 41 92 8.39e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 121 sgRNAs with CRISPR-Local

Find 487 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGGTACTTAGCCTATTT+TGG 0.108241 3_1:+4409731 Msa0345270:CDS
AGTAGAAAACTTTACTTTAA+AGG 0.129713 3_1:-4403041 None:intergenic
ACCTTCTTTCTTCTTGTAAA+TGG 0.145840 3_1:-4409812 None:intergenic
TGTCTATCAGTCTCGAAATT+TGG 0.157460 3_1:+4409958 Msa0345270:CDS
CGATCTTGCCTAATGTATTT+TGG 0.185757 3_1:-4403613 None:intergenic
GGGAATTTCATAAAATTTAT+TGG 0.195974 3_1:+4402780 Msa0345270:CDS
CTATCATGCTTAATGTATTT+TGG 0.196702 3_1:-4410421 None:intergenic
ATATGTAGAATTGACTTTAA+AGG 0.213151 3_1:-4409849 None:intergenic
TACCATGTCTTACTTGCTTT+TGG 0.226717 3_1:+4403070 Msa0345270:CDS
TACCATGTCTTACTTGCTTT+TGG 0.226717 3_1:+4409878 Msa0345270:CDS
AATTTATTGGAGAAATTTCT+TGG 0.271876 3_1:+4402793 Msa0345270:CDS
GGGAGTTTCATAAAATTTAC+TGG 0.278281 3_1:+4409588 Msa0345270:CDS
ATTATCTTCTATGTTATTCA+TGG 0.297170 3_1:-4409474 None:intergenic
ACAACATGTAAAGTGTGTTT+AGG 0.310726 3_1:+4410382 Msa0345270:CDS
ATCTCAAAATTAAATCTTCA+TGG 0.311366 3_1:-4407203 None:intergenic
CTCAGAGGAGTTTGTCTTAG+TGG 0.311907 3_1:+4403099 Msa0345270:CDS
ATCAAATGCATAGTATGTTT+AGG 0.314526 3_1:+4403574 Msa0345270:CDS
TCAAGAATATCCCAGGAAAA+TGG 0.316158 3_1:-4409500 None:intergenic
TCAAATGCATAGTATGTTTA+GGG 0.321365 3_1:+4403575 Msa0345270:CDS
GACGACCTCTTTGAATTTGC+TGG 0.321873 3_1:+4402740 Msa0345270:CDS
GTCTATCAGTCTCGAAATTT+GGG 0.331483 3_1:+4409959 Msa0345270:CDS
CAACATGTAAAGTGTGTTTA+GGG 0.332853 3_1:+4410383 Msa0345270:CDS
GTCGCTTCATGTAAAAGTTC+TGG 0.333120 3_1:+4409926 Msa0345270:CDS
CAAAGGTGATCAATCACTTT+TGG 0.340937 3_1:+4402906 Msa0345270:intron
TTCCAGCTTGACATAATTCA+TGG 0.341057 3_1:-4410245 None:intergenic
TTTAATAACTAATGGTTCTT+GGG 0.345665 3_1:-4409627 None:intergenic
CAATAACCATGTTACTCATT+TGG 0.348533 3_1:-4410523 None:intergenic
TTTCTTGCGTGTGCAAGAAT+TGG 0.355227 3_1:+4409564 Msa0345270:CDS
GTGGCTTTATGTAAAAGTTC+TGG 0.359573 3_1:+4403118 Msa0345270:CDS
CGAAGACGATCAATCAATTC+TGG 0.363197 3_1:+4409714 Msa0345270:CDS
TCCGCTAGAACATCCAAAAT+AGG 0.373337 3_1:-4409744 None:intergenic
ATTAAGAGTGTACGAGTTGT+TGG 0.382597 3_1:+4407176 Msa0345270:CDS
AAAGGAAAATGCCTACTTGC+TGG 0.383831 3_1:+4410459 Msa0345270:CDS
TTTCAAAACCCCACCTCCTC+AGG 0.410146 3_1:-4410327 None:intergenic
TTTGGCACTTAGCCTATTGT+GGG 0.419830 3_1:+4402924 Msa0345270:CDS
TTAGTTCTTCCTCATGCATA+AGG 0.423714 3_1:+4403332 Msa0345270:CDS
TACATTAAGCATGATAGAAC+TGG 0.424208 3_1:+4410427 Msa0345270:CDS
TTGCTGGTGTGTGCAAGAAT+TGG 0.427087 3_1:+4402756 Msa0345270:CDS
ACAAACTGCCAAAATACATT+AGG 0.431460 3_1:+4403605 Msa0345270:CDS
AGGAAAAGAATTTCTTATCA+TGG 0.433315 3_1:-4409658 None:intergenic
TTTGATAGATGAAAGATTGA+TGG 0.433680 3_1:-4403557 None:intergenic
TAAACACACTTTACATGTTG+TGG 0.439177 3_1:-4410380 None:intergenic
AAACACCAATCCAACAAGTA+TGG 0.440540 3_1:-4403661 None:intergenic
TTATGTCAAGCTGGAAACTT+TGG 0.444741 3_1:+4410252 Msa0345270:CDS
AGTTTGATTTCATATTTAGT+TGG 0.445957 3_1:-4407240 None:intergenic
ATCAGTCTCGAAATTTGGGT+TGG 0.448207 3_1:+4409963 Msa0345270:CDS
TATGTCAAGCTGGAAACTTT+GGG 0.448977 3_1:+4410253 Msa0345270:CDS
GCCTATTGTGGGTCTTCTAG+TGG 0.450870 3_1:+4402935 Msa0345270:CDS
GTCATCGAAATCTAGATCTC+TGG 0.451722 3_1:-4409531 None:intergenic
TCAGTCTCGAAATTTGGGTT+GGG 0.465385 3_1:+4409964 Msa0345270:CDS
TTCATATTTAGTTGGCAAGA+AGG 0.469109 3_1:-4407232 None:intergenic
CTAAGGTTAGTTTGCTGTGA+TGG 0.475690 3_1:+4410157 Msa0345270:CDS
TCTATTTACAAGAAGAAAGA+TGG 0.476603 3_1:+4403003 Msa0345270:CDS
ATATGAAATCAAACTTCCAT+TGG 0.479714 3_1:+4407248 Msa0345270:CDS
GAAGACCATACTTGTTGGAT+TGG 0.481190 3_1:+4403656 Msa0345270:CDS
AGCGGATATTTGATCATGAA+AGG 0.482955 3_1:+4409761 Msa0345270:CDS
TACACCTATGTTGACCTTGT+CGG 0.484152 3_1:-4403254 None:intergenic
CATTGAGCAACCTGAGGAGG+TGG 0.488223 3_1:+4410317 Msa0345270:CDS
TAGAAGAAGACCATACTTGT+TGG 0.489906 3_1:+4403651 Msa0345270:CDS
AAAATGCCTACTTGCTGGAT+TGG 0.490737 3_1:+4410464 Msa0345270:CDS
GTAAACATTCAATATTTCCT+CGG 0.492474 3_1:-4410206 None:intergenic
ACAAAGTCAACAACCTTCCA+TGG 0.493618 3_1:-4410010 None:intergenic
CTTGCGTGTGCAAGAATTGG+AGG 0.496446 3_1:+4409567 Msa0345270:CDS
TCCATTTACAAGAAGAAAGA+AGG 0.500617 3_1:+4409811 Msa0345270:CDS
GCGGATATTTGATCATGAAA+GGG 0.505605 3_1:+4409762 Msa0345270:CDS
AACCATGAATTATGTCAAGC+TGG 0.505920 3_1:+4410243 Msa0345270:CDS
TCGGTCAGCTATGCTGATGA+AGG 0.509137 3_1:-4409678 None:intergenic
GTCACCAACGAGGCCATCAT+AGG 0.512536 3_1:+4410058 Msa0345270:CDS
ACAAATTATGAAGGATTACA+AGG 0.516015 3_1:+4407125 Msa0345270:intron
AATCACACCTTCAGTTCAGC+TGG 0.522086 3_1:+4407344 Msa0345270:CDS
TCCACTAGAAGACCCACAAT+AGG 0.522549 3_1:-4402936 None:intergenic
CATCACAGCAAACTAACCTT+AGG 0.524454 3_1:-4410156 None:intergenic
TCGGTCAGGTAAGCTGATGA+AGG 0.528144 3_1:-4402870 None:intergenic
CATGAGGAAGAACTAACATT+GGG 0.529241 3_1:-4403325 None:intergenic
GGCTGAAAGAATTGATGCTA+GGG 0.536935 3_1:+4407146 Msa0345270:CDS
CAAGTCGAGTACACCTATGA+TGG 0.537478 3_1:-4410071 None:intergenic
AGGCTGAAAGAATTGATGCT+AGG 0.540522 3_1:+4407145 Msa0345270:CDS
GGAAATATTGAATGTTTACA+AGG 0.540759 3_1:+4410210 Msa0345270:CDS
TGTTGTGGATGAAAGATTGA+TGG 0.544678 3_1:-4410365 None:intergenic
TGGGTTACATATTTAACAGT+GGG 0.544949 3_1:+4409983 Msa0345270:CDS
CTTTAGACATCAACGATATG+AGG 0.560266 3_1:+4410489 Msa0345270:CDS
GCATGAGGAAGAACTAACAT+TGG 0.560385 3_1:-4403326 None:intergenic
ATTTAACAGTGGGAAATCCA+TGG 0.561286 3_1:+4409993 Msa0345270:CDS
TACACCTATGATGGCCTCGT+TGG 0.570402 3_1:-4410062 None:intergenic
AATGACATCAAGAATATCCC+AGG 0.580022 3_1:-4409507 None:intergenic
AGTGGTTCATATTGAGTCCG+AGG 0.581618 3_1:+4410189 Msa0345270:CDS
CCAGTGTCCAGCTGAACTGA+AGG 0.581775 3_1:-4407351 None:intergenic
CTGGTGTGTGCAAGAATTGG+AGG 0.583364 3_1:+4402759 Msa0345270:CDS
CCTTCAGTTCAGCTGGACAC+TGG 0.584057 3_1:+4407351 Msa0345270:CDS
TCATCGTCATCACGATCCAA+TGG 0.590882 3_1:-4407264 None:intergenic
TAACATCTACGTCACACCTA+AGG 0.591743 3_1:+4410140 Msa0345270:CDS
TTGCGTGTGCAAGAATTGGA+GGG 0.591841 3_1:+4409568 Msa0345270:CDS
ACACGCAAGAAAATTGAAAG+AGG 0.594871 3_1:-4409553 None:intergenic
TGTGACGTAGATGTTACATC+GGG 0.598252 3_1:-4410133 None:intergenic
TAAACATCTACACTATGAGG+TGG 0.602066 3_1:+4403684 Msa0345270:CDS
TTGAGCAACCTGAGGAGGTG+GGG 0.603109 3_1:+4410319 Msa0345270:CDS
AACAGTGGGAAATCCATGGA+AGG 0.604878 3_1:+4409997 Msa0345270:CDS
ATTGAGCAACCTGAGGAGGT+GGG 0.606051 3_1:+4410318 Msa0345270:CDS
TACATTAGGCAAGATCGACA+TGG 0.609700 3_1:+4403619 Msa0345270:CDS
TAGACATCAACGATATGAGG+TGG 0.615065 3_1:+4410492 Msa0345270:CDS
TTGGGTTACATATTTAACAG+TGG 0.618018 3_1:+4409982 Msa0345270:CDS
AAAGCACCAATCCAGCAAGT+AGG 0.620337 3_1:-4410470 None:intergenic
CGGATATTTGATCATGAAAG+GGG 0.623275 3_1:+4409763 Msa0345270:CDS
GTGTGACGTAGATGTTACAT+CGG 0.623306 3_1:-4410134 None:intergenic
TATTTACGTCGTCACCGACA+AGG 0.624444 3_1:+4403240 Msa0345270:CDS
AGAGTGTACGAGTTGTTGGA+CGG 0.625456 3_1:+4407180 Msa0345270:CDS
TAGAACTGGAGTTCCTCCAA+AGG 0.630462 3_1:+4410441 Msa0345270:CDS
ATGCATTGAGCAACCTGAGG+AGG 0.630478 3_1:+4410314 Msa0345270:CDS
ATAAGGATGATTAGTTGTGA+TGG 0.632071 3_1:+4403349 Msa0345270:CDS
ACTAATCATCCTTATGCATG+AGG 0.641975 3_1:-4403341 None:intergenic
ATGATATCAAGCAAATCCCA+AGG 0.642250 3_1:-4402698 None:intergenic
TGCCAAAAGCAAGTAAGACA+TGG 0.647599 3_1:-4403072 None:intergenic
TGCCAAAAGCAAGTAAGACA+TGG 0.647599 3_1:-4409880 None:intergenic
GTCACCGACAAGGTCAACAT+AGG 0.650684 3_1:+4403250 Msa0345270:CDS
ACACACCAGCAAATTCAAAG+AGG 0.672639 3_1:-4402745 None:intergenic
CAAATGCATAGTATGTTTAG+GGG 0.675474 3_1:+4403576 Msa0345270:CDS
TCTATGCATTGAGCAACCTG+AGG 0.699387 3_1:+4410311 Msa0345270:CDS
AACATGTAAAGTGTGTTTAG+GGG 0.701783 3_1:+4410384 Msa0345270:CDS
GACGATGATGAAGAACAAGA+TGG 0.708057 3_1:+4407279 Msa0345270:CDS
TGGTGTGTGCAAGAATTGGA+GGG 0.716460 3_1:+4402760 Msa0345270:CDS
TATATATGTTGTCACCAACG+AGG 0.759362 3_1:+4410048 Msa0345270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAATACAAAATATAATAA+AGG - chr3_1:4403868-4403887 None:intergenic 10.0%
!!! TTTATTATATTTTGTATTGA+TGG + chr3_1:4403867-4403886 Msa0345270:intron 10.0%
!! TAAAAATAGTAAAAGTTTAT+TGG - chr3_1:4404908-4404927 None:intergenic 10.0%
!! TGATAATCAAAATAAAAAAT+AGG + chr3_1:4405105-4405124 Msa0345270:intron 10.0%
!!! TTTTTTATAAGAAAAAGTTT+AGG - chr3_1:4406688-4406707 None:intergenic 10.0%
!!! AATTTAGTTGTTAATTTTAA+AGG + chr3_1:4406788-4406807 Msa0345270:intron 10.0%
!!! ATTTAGTTGTTAATTTTAAA+GGG + chr3_1:4406789-4406808 Msa0345270:intron 10.0%
!! ATTATTAAATTTCAATCTTA+GGG - chr3_1:4407690-4407709 None:intergenic 10.0%
!! TATTATTAAATTTCAATCTT+AGG - chr3_1:4407691-4407710 None:intergenic 10.0%
!!! TCTTTATCTTATTATTTTTA+AGG + chr3_1:4408672-4408691 Msa0345270:intron 10.0%
!!! AAAAATATTTTTTTGGTTTT+AGG + chr3_1:4408750-4408769 Msa0345270:intron 10.0%
!! CAAATATTCTATATATTATA+AGG + chr3_1:4408897-4408916 Msa0345270:intron 10.0%
!!! TTCTAAAAAATTTATATTTG+AGG - chr3_1:4410101-4410120 None:intergenic 10.0%
!! CAAATTATTGGAAAATAAAA+GGG - chr3_1:4403793-4403812 None:intergenic 15.0%
!! TCAAATTATTGGAAAATAAA+AGG - chr3_1:4403794-4403813 None:intergenic 15.0%
!! AGTTTATTTAGTCAAATTAT+TGG - chr3_1:4403805-4403824 None:intergenic 15.0%
!! TTAAGTAGAAAATATAAGTT+TGG + chr3_1:4404303-4404322 Msa0345270:intron 15.0%
!!! ATTTTTAGAACAAGTTAAAA+TGG + chr3_1:4404921-4404940 Msa0345270:intron 15.0%
!!! TTTATTTTGATTATCATGTT+TGG - chr3_1:4405101-4405120 None:intergenic 15.0%
!!! TTAATTTTATCTAACAATTG+AGG + chr3_1:4405162-4405181 Msa0345270:intron 15.0%
!!! TAGCATATTTATTTTTTCTT+TGG - chr3_1:4405778-4405797 None:intergenic 15.0%
!! ATAAAGAAAAAACATTCATA+CGG + chr3_1:4405905-4405924 Msa0345270:intron 15.0%
!!! CAATATTGTTTATACTATTT+TGG + chr3_1:4406044-4406063 Msa0345270:intron 15.0%
!!! ACTTGATTATTTTTCTATTA+TGG - chr3_1:4406136-4406155 None:intergenic 15.0%
!!! AAATAATCAAGTTGATTTTT+TGG + chr3_1:4406144-4406163 Msa0345270:intron 15.0%
!!! AATAATCAAGTTGATTTTTT+GGG + chr3_1:4406145-4406164 Msa0345270:intron 15.0%
!!! TTTGGTGTATAATTTAATAT+TGG + chr3_1:4406250-4406269 Msa0345270:intron 15.0%
!! TTGGTGTATAATTTAATATT+GGG + chr3_1:4406251-4406270 Msa0345270:intron 15.0%
!!! TTTTAGTAAACTAATTAGTA+GGG - chr3_1:4406499-4406518 None:intergenic 15.0%
!!! TTTTTAGTAAACTAATTAGT+AGG - chr3_1:4406500-4406519 None:intergenic 15.0%
!!! TATATAAAGTGTCAATAAAT+TGG + chr3_1:4407490-4407509 Msa0345270:intron 15.0%
!! GATTGAAATTTAATAATAGA+AGG + chr3_1:4407693-4407712 Msa0345270:intron 15.0%
!!! AATGTTTACAAAATATTTTC+TGG - chr3_1:4407927-4407946 None:intergenic 15.0%
!!! TTATTTTTAAGGCTTAAATA+TGG + chr3_1:4408683-4408702 Msa0345270:intron 15.0%
!!! ACCAAAAAAATATTTTTACA+GGG - chr3_1:4409007-4409026 None:intergenic 15.0%
!!! AACCAAAAAAATATTTTTAC+AGG - chr3_1:4409006-4409025 None:intergenic 15.0%
!!! AAATATAGAATAATTGGTTT+TGG + chr3_1:4408779-4408798 Msa0345270:intron 15.0%
!! AAATCATTTCATATTGAAAT+TGG + chr3_1:4408830-4408849 Msa0345270:intron 15.0%
!!! AAATATACAAAATTTGGTTT+TGG - chr3_1:4408975-4408994 None:intergenic 15.0%
!!! AACCAAAAAAATATTTTTAC+AGG + chr3_1:4409006-4409025 Msa0345270:intron 15.0%
!!! ACCAAAAAAATATTTTTACA+GGG + chr3_1:4409007-4409026 Msa0345270:intron 15.0%
!! AATGAGATGTTAAATTAATA+AGG - chr3_1:4409163-4409182 None:intergenic 15.0%
!! TAAATAACAAAGGATAATAT+TGG + chr3_1:4409205-4409224 Msa0345270:intron 15.0%
!!! TAAGACTTTTTAATAACTAA+TGG - chr3_1:4409638-4409657 None:intergenic 15.0%
!! GGGAATTTCATAAAATTTAT+TGG + chr3_1:4402780-4402799 Msa0345270:CDS 20.0%
!! AATTTATTGGAGAAATTTCT+TGG + chr3_1:4402793-4402812 Msa0345270:CDS 20.0%
!! AGTAGAAAACTTTACTTTAA+AGG - chr3_1:4403044-4403063 None:intergenic 20.0%
!!! TTTGACTAAATAAACTTGTT+TGG + chr3_1:4403809-4403828 Msa0345270:intron 20.0%
!!! TTATATTTTGTATTGATGGA+AGG + chr3_1:4403871-4403890 Msa0345270:intron 20.0%
!!! TATATTTTGTATTGATGGAA+GGG + chr3_1:4403872-4403891 Msa0345270:intron 20.0%
!! AGAAGTTCATAAAATACAAA+TGG + chr3_1:4403998-4404017 Msa0345270:intron 20.0%
!! GATATAATATAATTTCTGCT+TGG - chr3_1:4404127-4404146 None:intergenic 20.0%
!!! ATATTTGTGATGTTTAAAGT+CGG + chr3_1:4404821-4404840 Msa0345270:intron 20.0%
!! AAATTAAGCTACAATCTTAT+TGG - chr3_1:4405149-4405168 None:intergenic 20.0%
!! TTTGTGATTTATCATTTACA+AGG - chr3_1:4405627-4405646 None:intergenic 20.0%
!! TTGAAATTCATTTGTATTTG+AGG + chr3_1:4405724-4405743 Msa0345270:intron 20.0%
!! TAATAAAAAGTAGAAAGAAG+TGG - chr3_1:4405879-4405898 None:intergenic 20.0%
!!! TGTTTGATTGCTTATTATTT+TGG + chr3_1:4406084-4406103 Msa0345270:intron 20.0%
!! GTACAAAATAATGAAATATG+TGG + chr3_1:4406167-4406186 Msa0345270:intron 20.0%
!! TGGTGTATAATTTAATATTG+GGG + chr3_1:4406252-4406271 Msa0345270:intron 20.0%
!! AAGAAAATTAAAGATCAAGA+AGG - chr3_1:4406291-4406310 None:intergenic 20.0%
!!! CTTGATCTTTAATTTTCTTT+AGG + chr3_1:4406292-4406311 Msa0345270:intron 20.0%
!! TTAAAAGAAATTTGGAAAAG+AGG - chr3_1:4406815-4406834 None:intergenic 20.0%
!!! TCTTTTCCAAATTTCTTTTA+AGG + chr3_1:4406814-4406833 Msa0345270:intron 20.0%
!!! ATCTTTTCTACAAATTATGA+AGG + chr3_1:4407116-4407135 Msa0345270:intron 20.0%
!! ATCTCAAAATTAAATCTTCA+TGG - chr3_1:4407206-4407225 None:intergenic 20.0%
!!! AGTTTGATTTCATATTTAGT+TGG - chr3_1:4407243-4407262 None:intergenic 20.0%
!! TTTATATAGCTATATAGCTA+AGG - chr3_1:4407478-4407497 None:intergenic 20.0%
!! GAGTACTAAAAAAATGATTA+GGG + chr3_1:4408157-4408176 Msa0345270:intron 20.0%
!! AGTACTAAAAAAATGATTAG+GGG + chr3_1:4408158-4408177 Msa0345270:intron 20.0%
!!! ATAGTTTATTATCCCATTTT+CGG - chr3_1:4408595-4408614 None:intergenic 20.0%
!! AACTATTCACATTAAAATGT+TGG + chr3_1:4408609-4408628 Msa0345270:intron 20.0%
!! ATTATATTCCCAAACAAAAA+TGG - chr3_1:4408638-4408657 None:intergenic 20.0%
!!! ATTTTTGTTTGGGAATATAA+TGG + chr3_1:4408637-4408656 Msa0345270:intron 20.0%
!!! TTTTTGTTTGGGAATATAAT+GGG + chr3_1:4408638-4408657 Msa0345270:intron 20.0%
!!! TCCCTGTAAAAATATTTTTT+TGG + chr3_1:4408743-4408762 Msa0345270:intron 20.0%
!!! CAATATGAAATGATTTTACA+AGG - chr3_1:4408826-4408845 None:intergenic 20.0%
!! GGACTAAAATGAATATTATA+GGG - chr3_1:4408857-4408876 None:intergenic 20.0%
!! AGGACTAAAATGAATATTAT+AGG - chr3_1:4408858-4408877 None:intergenic 20.0%
!!! AAATTGATTCATATTGGATT+TGG - chr3_1:4408924-4408943 None:intergenic 20.0%
!!! CTTGTAAAATTGATTCATAT+TGG - chr3_1:4408930-4408949 None:intergenic 20.0%
!!! CAATATGAATCAATTTTACA+AGG + chr3_1:4408928-4408947 Msa0345270:intron 20.0%
!!! TCCCTGTAAAAATATTTTTT+TGG - chr3_1:4408743-4408762 None:intergenic 20.0%
!! TCAAAAAGTGACAATTAAAA+AGG - chr3_1:4409066-4409085 None:intergenic 20.0%
!!! TTATCCTTTGTTATTTATTG+CGG - chr3_1:4409202-4409221 None:intergenic 20.0%
!! TGTATACTGTCATTAAAAAT+AGG - chr3_1:4409358-4409377 None:intergenic 20.0%
!! ATTATCTTCTATGTTATTCA+TGG - chr3_1:4409477-4409496 None:intergenic 20.0%
!! AATTTACTGGAAAAAATTCT+TGG + chr3_1:4409601-4409620 Msa0345270:CDS 20.0%
!! TTTAATAACTAATGGTTCTT+GGG - chr3_1:4409630-4409649 None:intergenic 20.0%
!!! TTTTAATAACTAATGGTTCT+TGG - chr3_1:4409631-4409650 None:intergenic 20.0%
!!! ATATGTAGAATTGACTTTAA+AGG - chr3_1:4409852-4409871 None:intergenic 20.0%
!!! AGATGATTTTTTAGTTCCTT+GGG + chr3_1:4402682-4402701 Msa0345270:CDS 25.0%
! GGAAAAAGATTTCTCATAAT+GGG - chr3_1:4402852-4402871 None:intergenic 25.0%
! AGGAAAAAGATTTCTCATAA+TGG - chr3_1:4402853-4402872 None:intergenic 25.0%
! TCTATTTACAAGAAGAAAGA+TGG + chr3_1:4403003-4403022 Msa0345270:CDS 25.0%
!! AATCAAGAATTTTGTCAAGT+TGG + chr3_1:4403435-4403454 Msa0345270:intron 25.0%
! TTTGATAGATGAAAGATTGA+TGG - chr3_1:4403560-4403579 None:intergenic 25.0%
! ATCAAATGCATAGTATGTTT+AGG + chr3_1:4403574-4403593 Msa0345270:CDS 25.0%
! TCAAATGCATAGTATGTTTA+GGG + chr3_1:4403575-4403594 Msa0345270:CDS 25.0%
!! TTTTAAACATCTACACTATG+AGG + chr3_1:4403681-4403700 Msa0345270:CDS 25.0%
! TGTAACTTACTATTTGTGTT+TGG + chr3_1:4403749-4403768 Msa0345270:intron 25.0%
! ATCATGAAAAGTTTACTCTA+TGG - chr3_1:4404064-4404083 None:intergenic 25.0%
! GCAGAAATTATATTATATCG+AGG + chr3_1:4404128-4404147 Msa0345270:intron 25.0%
!!! TTTGACAAGGATATTTTTTG+TGG + chr3_1:4404158-4404177 Msa0345270:intron 25.0%
! TTGAATATTGTCAAACTGTT+TGG - chr3_1:4404275-4404294 None:intergenic 25.0%
! TCGTTAACGAAATATTAGTT+TGG - chr3_1:4404330-4404349 None:intergenic 25.0%
!!! TTGGAAGATTTTAAGAATGT+AGG - chr3_1:4404380-4404399 None:intergenic 25.0%
! GAGACAATAATAAATTAGGT+AGG - chr3_1:4404697-4404716 None:intergenic 25.0%
! TTGGCTTAAGAAATTGTAAA+TGG + chr3_1:4404731-4404750 Msa0345270:intron 25.0%
! ATAGTAAAAGTTTATTGGTG+TGG - chr3_1:4404903-4404922 None:intergenic 25.0%
!!! ATTTTGATTATCATGTTTGG+TGG - chr3_1:4405098-4405117 None:intergenic 25.0%
! TGTAAGTAGAGTAAAAGTTT+AGG - chr3_1:4405275-4405294 None:intergenic 25.0%
!! TGATTAATTTTCATCGTATG+TGG + chr3_1:4405305-4405324 Msa0345270:intron 25.0%
! AGAGAAATATTAGAATGTTC+TGG - chr3_1:4405581-4405600 None:intergenic 25.0%
! CCTGTAAAATAAATAAACAG+TGG - chr3_1:4406005-4406024 None:intergenic 25.0%
!!! CCACTGTTTATTTATTTTAC+AGG + chr3_1:4406002-4406021 Msa0345270:intron 25.0%
! TATAATTTAATATTGGGGAG+TGG + chr3_1:4406257-4406276 Msa0345270:intron 25.0%
! TGTATGTTTCCAATTGTTAT+TGG - chr3_1:4406353-4406372 None:intergenic 25.0%
! ACAAAAATGTCGAAATTGAT+AGG - chr3_1:4406424-4406443 None:intergenic 25.0%
!! ACATTTTTGTTAGTTATGCT+AGG + chr3_1:4406434-4406453 Msa0345270:intron 25.0%
! TATAGGCCTTAAAAGAAATT+TGG - chr3_1:4406823-4406842 None:intergenic 25.0%
!! AAGTTTAATTAACTTGAGTC+GGG - chr3_1:4406873-4406892 None:intergenic 25.0%
!! GAAGTTTAATTAACTTGAGT+CGG - chr3_1:4406874-4406893 None:intergenic 25.0%
! ATGAAAGAAGATTACAATGA+AGG - chr3_1:4406954-4406973 None:intergenic 25.0%
! TCAGCATTAAAATGTAAGTT+TGG + chr3_1:4407069-4407088 Msa0345270:intron 25.0%
! TAAGTTTGGATATGAGAAAA+GGG + chr3_1:4407083-4407102 Msa0345270:intron 25.0%
! ACAAATTATGAAGGATTACA+AGG + chr3_1:4407125-4407144 Msa0345270:intron 25.0%
! ATATGAAATCAAACTTCCAT+TGG + chr3_1:4407248-4407267 Msa0345270:CDS 25.0%
!!! ACAAGTTGATGTTATATCTT+TGG + chr3_1:4407790-4407809 Msa0345270:intron 25.0%
!! ATCTTTGGAGAATTAAAAGT+AGG + chr3_1:4407805-4407824 Msa0345270:intron 25.0%
!! TCTTTGGAGAATTAAAAGTA+GGG + chr3_1:4407806-4407825 Msa0345270:intron 25.0%
!! TTCATGCATTTTATGTCTAT+AGG + chr3_1:4407837-4407856 Msa0345270:intron 25.0%
! AGATAAAATAGAGAATCCTA+TGG - chr3_1:4408005-4408024 None:intergenic 25.0%
!! TAGTTGATGTAACAAAGATA+TGG + chr3_1:4408120-4408139 Msa0345270:intron 25.0%
!! GGAGTACTAAAAAAATGATT+AGG + chr3_1:4408156-4408175 Msa0345270:intron 25.0%
!! GCATTTTATTGTTCTAACTA+AGG + chr3_1:4408186-4408205 Msa0345270:intron 25.0%
! ATTTAATTCCAAAGTTTCAG+AGG - chr3_1:4408241-4408260 None:intergenic 25.0%
! TACACTTTCAATAGCAATAT+AGG - chr3_1:4408380-4408399 None:intergenic 25.0%
! AATATTTCTTTCCACCTATT+CGG + chr3_1:4408440-4408459 Msa0345270:intron 25.0%
! ATGTTTCAATTGCTATACAT+TGG + chr3_1:4408562-4408581 Msa0345270:intron 25.0%
!! TAGTTTATTATCCCATTTTC+GGG - chr3_1:4408594-4408613 None:intergenic 25.0%
! CCAATTATTCTATATTTGCA+AGG - chr3_1:4408776-4408795 None:intergenic 25.0%
! CCTTGCAAATATAGAATAAT+TGG + chr3_1:4408773-4408792 Msa0345270:intron 25.0%
! AGGATTAAAACAAAATACGA+AGG - chr3_1:4408806-4408825 None:intergenic 25.0%
!! ACCAAATTTTGTATATTTGC+AGG + chr3_1:4408977-4408996 Msa0345270:intron 25.0%
!! CCAAATTTTGTATATTTGCA+GGG + chr3_1:4408978-4408997 Msa0345270:intron 25.0%
! AAGTGACAATTAAAAAGGAA+CGG - chr3_1:4409061-4409080 None:intergenic 25.0%
!! GAAACAATTATTGATTGTCT+TGG - chr3_1:4409102-4409121 None:intergenic 25.0%
! TTTGAAAGTGACAGTTAAAT+AGG + chr3_1:4409256-4409275 Msa0345270:intron 25.0%
! AGGAAAAGAATTTCTTATCA+TGG - chr3_1:4409661-4409680 None:intergenic 25.0%
! GTAAACATTCAATATTTCCT+CGG - chr3_1:4410209-4410228 None:intergenic 25.0%
! GGAAATATTGAATGTTTACA+AGG + chr3_1:4410210-4410229 Msa0345270:CDS 25.0%
!! CTATCATGCTTAATGTATTT+TGG - chr3_1:4410424-4410443 None:intergenic 25.0%
!!! CAGATGATTTTTTAGTTCCT+TGG + chr3_1:4402681-4402700 Msa0345270:CDS 30.0%
! GAAGACTTTTGAACAAGTAA+TGG - chr3_1:4402830-4402849 None:intergenic 30.0%
! CCTTTGAGTGATAAACTTTT+CGG - chr3_1:4402892-4402911 None:intergenic 30.0%
! ATAAGGATGATTAGTTGTGA+TGG + chr3_1:4403349-4403368 Msa0345270:CDS 30.0%
!!! TTTTGTCAAGTTGGAAACTT+TGG + chr3_1:4403444-4403463 Msa0345270:intron 30.0%
!! TTTGTCAAGTTGGAAACTTT+GGG + chr3_1:4403445-4403464 Msa0345270:intron 30.0%
CAAATGCATAGTATGTTTAG+GGG + chr3_1:4403576-4403595 Msa0345270:CDS 30.0%
ACAAACTGCCAAAATACATT+AGG + chr3_1:4403605-4403624 Msa0345270:CDS 30.0%
GAAAATAAAAGGGAAACATG+GGG - chr3_1:4403783-4403802 None:intergenic 30.0%
GGAAAATAAAAGGGAAACAT+GGG - chr3_1:4403784-4403803 None:intergenic 30.0%
TGGAAAATAAAAGGGAAACA+TGG - chr3_1:4403785-4403804 None:intergenic 30.0%
TGGTTTATAGAAAACATGGA+GGG - chr3_1:4403909-4403928 None:intergenic 30.0%
CTATAAACCACGCAAATATT+AGG + chr3_1:4403919-4403938 Msa0345270:intron 30.0%
CAAATATTAGGATGTCATTG+TGG + chr3_1:4403931-4403950 Msa0345270:intron 30.0%
! CATAATACATGCAAAAGTAC+GGG - chr3_1:4404201-4404220 None:intergenic 30.0%
GCATAATACATGCAAAAGTA+CGG - chr3_1:4404202-4404221 None:intergenic 30.0%
GAGGGGTAAAATTGTAATAT+TGG - chr3_1:4404399-4404418 None:intergenic 30.0%
! AATTTTGTAATCTCGAAGAG+GGG - chr3_1:4404416-4404435 None:intergenic 30.0%
! GAATTTTGTAATCTCGAAGA+GGG - chr3_1:4404417-4404436 None:intergenic 30.0%
CTCTTCGAGATTACAAAATT+CGG + chr3_1:4404416-4404435 Msa0345270:intron 30.0%
GAGTTATAGAGTATGAAAAC+AGG - chr3_1:4404584-4404603 None:intergenic 30.0%
AGATCAAGTTCATAAACCAA+TGG + chr3_1:4404611-4404630 Msa0345270:intron 30.0%
! CGATTGCATTTTTATTCCAT+TGG - chr3_1:4404630-4404649 None:intergenic 30.0%
TTTGTGAGTTTCAACTTTGA+AGG + chr3_1:4404850-4404869 Msa0345270:intron 30.0%
! TTAACTTTTGATGTTCTTCC+CGG - chr3_1:4404985-4405004 None:intergenic 30.0%
TTGTGTTTAGACAATATGGA+AGG - chr3_1:4405226-4405245 None:intergenic 30.0%
TGTCTTGTGTTTAGACAATA+TGG - chr3_1:4405230-4405249 None:intergenic 30.0%
AGCTTAGTTAGTATGATTAG+TGG + chr3_1:4405375-4405394 Msa0345270:intron 30.0%
TATCATCACTTCATGCAAAA+AGG + chr3_1:4405817-4405836 Msa0345270:intron 30.0%
GGAATAGGAAGATTGATAAA+AGG - chr3_1:4405858-4405877 None:intergenic 30.0%
AAAGTAGAAAGAAGTGGAAT+AGG - chr3_1:4405873-4405892 None:intergenic 30.0%
CAAAGCAAAAGATATATGCT+TGG + chr3_1:4405951-4405970 Msa0345270:intron 30.0%
AATATGTGGTTTCATACATG+TGG + chr3_1:4406181-4406200 Msa0345270:intron 30.0%
! TTCCAATTGTTATTGGCATT+TGG - chr3_1:4406346-4406365 None:intergenic 30.0%
TCAGACACACTAATTAAGTA+GGG - chr3_1:4406401-4406420 None:intergenic 30.0%
TGAGTAAAATTTGTACCATG+TGG - chr3_1:4406469-4406488 None:intergenic 30.0%
AACAGTCATAGCATCATTTA+CGG - chr3_1:4406532-4406551 None:intergenic 30.0%
! TTTAAGGCCTATAGATTTGT+TGG + chr3_1:4406830-4406849 Msa0345270:intron 30.0%
! TTAAGGCCTATAGATTTGTT+GGG + chr3_1:4406831-4406850 Msa0345270:intron 30.0%
GTAAGTTTGGATATGAGAAA+AGG + chr3_1:4407082-4407101 Msa0345270:intron 30.0%
TTCATATTTAGTTGGCAAGA+AGG - chr3_1:4407235-4407254 None:intergenic 30.0%
ATGTCAAGTAGAATAATGGT+AGG - chr3_1:4407384-4407403 None:intergenic 30.0%
ACACATGTCAAGTAGAATAA+TGG - chr3_1:4407388-4407407 None:intergenic 30.0%
TGATAGATTACAGCAAAAAG+CGG - chr3_1:4407452-4407471 None:intergenic 30.0%
TTCTCTCAATACAATAACGA+TGG - chr3_1:4407517-4407536 None:intergenic 30.0%
AGAAGTGAGTGTAAGATTAA+GGG + chr3_1:4407533-4407552 Msa0345270:intron 30.0%
CTCATAGTTTAACGATAAGT+TGG + chr3_1:4407592-4407611 Msa0345270:intron 30.0%
!! TAGTTTAACGATAAGTTGGT+AGG + chr3_1:4407596-4407615 Msa0345270:intron 30.0%
!! AGTTTAACGATAAGTTGGTA+GGG + chr3_1:4407597-4407616 Msa0345270:intron 30.0%
TTAGGGGAAATCTTGTAAAT+TGG + chr3_1:4407631-4407650 Msa0345270:intron 30.0%
! AATAATAGAAGGTACACGAT+TGG + chr3_1:4407704-4407723 Msa0345270:intron 30.0%
! CTTTGGAGAATTAAAAGTAG+GGG + chr3_1:4407807-4407826 Msa0345270:intron 30.0%
ATATGACATTGTTCAACCAT+AGG + chr3_1:4407986-4408005 Msa0345270:intron 30.0%
ATCAACTAAAAAACACACAG+TGG - chr3_1:4408108-4408127 None:intergenic 30.0%
TGATGTAACAAAGATATGGA+AGG + chr3_1:4408124-4408143 Msa0345270:intron 30.0%
! AGATATGGAAGGTATATCTT+TGG + chr3_1:4408135-4408154 Msa0345270:intron 30.0%
!!! TCATTTTAGTCCTTGTTTTG+AGG + chr3_1:4408865-4408884 Msa0345270:intron 30.0%
!!! CATTTTAGTCCTTGTTTTGA+GGG + chr3_1:4408866-4408885 Msa0345270:intron 30.0%
AGGACTAAAACAAAATACCA+AGG + chr3_1:4408948-4408967 Msa0345270:intron 30.0%
CCCTGCAAATATACAAAATT+TGG - chr3_1:4408981-4409000 None:intergenic 30.0%
TCCAAAAGAGACACTTAAAA+AGG + chr3_1:4409292-4409311 Msa0345270:intron 30.0%
!!! TCCTTTTTAAGTGTCTCTTT+TGG - chr3_1:4409296-4409315 None:intergenic 30.0%
AAGAGACACTTAAAAAGGAA+CGG + chr3_1:4409297-4409316 Msa0345270:intron 30.0%
! AAGATAATTGTCCATTTTCC+TGG + chr3_1:4409489-4409508 Msa0345270:CDS 30.0%
! AGATAATTGTCCATTTTCCT+GGG + chr3_1:4409490-4409509 Msa0345270:CDS 30.0%
GGGAGTTTCATAAAATTTAC+TGG + chr3_1:4409588-4409607 Msa0345270:CDS 30.0%
! TCTTCGAGTGATAAACTTTT+CGG - chr3_1:4409700-4409719 None:intergenic 30.0%
TCCATTTACAAGAAGAAAGA+AGG + chr3_1:4409811-4409830 Msa0345270:CDS 30.0%
ACCTTCTTTCTTCTTGTAAA+TGG - chr3_1:4409815-4409834 None:intergenic 30.0%
TTGGGTTACATATTTAACAG+TGG + chr3_1:4409982-4410001 Msa0345270:CDS 30.0%
TGGGTTACATATTTAACAGT+GGG + chr3_1:4409983-4410002 Msa0345270:CDS 30.0%
!!! CATTGCCTTATTTTATGCTT+CGG + chr3_1:4410279-4410298 Msa0345270:CDS 30.0%
!!! ATTGCCTTATTTTATGCTTC+GGG + chr3_1:4410280-4410299 Msa0345270:CDS 30.0%
TAAACACACTTTACATGTTG+TGG - chr3_1:4410383-4410402 None:intergenic 30.0%
ACAACATGTAAAGTGTGTTT+AGG + chr3_1:4410382-4410401 Msa0345270:CDS 30.0%
CAACATGTAAAGTGTGTTTA+GGG + chr3_1:4410383-4410402 Msa0345270:CDS 30.0%
AACATGTAAAGTGTGTTTAG+GGG + chr3_1:4410384-4410403 Msa0345270:CDS 30.0%
TACATTAAGCATGATAGAAC+TGG + chr3_1:4410427-4410446 Msa0345270:CDS 30.0%
! ATCTGCTACCTTCTTCTTTT+TGG - chr3_1:4402666-4402685 None:intergenic 35.0%
ATGATATCAAGCAAATCCCA+AGG - chr3_1:4402701-4402720 None:intergenic 35.0%
CCGAAAAGTTTATCACTCAA+AGG + chr3_1:4402889-4402908 Msa0345270:intron 35.0%
! CAAAGGTGATCAATCACTTT+TGG + chr3_1:4402906-4402925 Msa0345270:intron 35.0%
! TACCATGTCTTACTTGCTTT+TGG + chr3_1:4403070-4403089 Msa0345270:CDS 35.0%
!! GTGGCTTTATGTAAAAGTTC+TGG + chr3_1:4403118-4403137 Msa0345270:CDS 35.0%
! GTCTACCAATCTCGAAATTT+TGG + chr3_1:4403151-4403170 Msa0345270:intron 35.0%
!! ACCAATCTCGAAATTTTGGT+TGG + chr3_1:4403155-4403174 Msa0345270:intron 35.0%
!!! CCAATCTCGAAATTTTGGTT+GGG + chr3_1:4403156-4403175 Msa0345270:intron 35.0%
TGGATTTCCCTTTGTTGAAT+AGG - chr3_1:4403185-4403204 None:intergenic 35.0%
ATTCAACAAAGGGAAATCCA+TGG + chr3_1:4403185-4403204 Msa0345270:intron 35.0%
CATGAGGAAGAACTAACATT+GGG - chr3_1:4403328-4403347 None:intergenic 35.0%
! TTAGTTCTTCCTCATGCATA+AGG + chr3_1:4403332-4403351 Msa0345270:CDS 35.0%
ACTAATCATCCTTATGCATG+AGG - chr3_1:4403344-4403363 None:intergenic 35.0%
! ATGCATTGATAAACCCTGAA+AGG + chr3_1:4403506-4403525 Msa0345270:intron 35.0%
ATTGATAAACCCTGAAAGGT+GGG + chr3_1:4403510-4403529 Msa0345270:intron 35.0%
! CGATCTTGCCTAATGTATTT+TGG - chr3_1:4403616-4403635 None:intergenic 35.0%
TAGAAGAAGACCATACTTGT+TGG + chr3_1:4403651-4403670 Msa0345270:CDS 35.0%
AAACACCAATCCAACAAGTA+TGG - chr3_1:4403664-4403683 None:intergenic 35.0%
TAAACATCTACACTATGAGG+TGG + chr3_1:4403684-4403703 Msa0345270:CDS 35.0%
GTGGTTTATAGAAAACATGG+AGG - chr3_1:4403910-4403929 None:intergenic 35.0%
TGCGTGGTTTATAGAAAACA+TGG - chr3_1:4403913-4403932 None:intergenic 35.0%
ATGACATCCTAATATTTGCG+TGG - chr3_1:4403929-4403948 None:intergenic 35.0%
TGTCACAGATAATTAAGACG+TGG - chr3_1:4403975-4403994 None:intergenic 35.0%
!!! GACAAGGATATTTTTTGTGG+TGG + chr3_1:4404161-4404180 Msa0345270:intron 35.0%
! CTCACGAGTACATTTTGAAT+AGG + chr3_1:4404246-4404265 Msa0345270:intron 35.0%
! CGAATTTTGTAATCTCGAAG+AGG - chr3_1:4404418-4404437 None:intergenic 35.0%
! AATACCTAAGGATTTTGCTG+CGG + chr3_1:4404513-4404532 Msa0345270:intron 35.0%
GAGTATGAAAACAGGAAAAG+TGG - chr3_1:4404576-4404595 None:intergenic 35.0%
CGCGGAGACAATAATAAATT+AGG - chr3_1:4404701-4404720 None:intergenic 35.0%
AGACTCTACAAAGATTTCGA+AGG + chr3_1:4405011-4405030 Msa0345270:intron 35.0%
AATTCCTTACACACACAGTA+GGG + chr3_1:4405065-4405084 Msa0345270:intron 35.0%
TTATCTAACAATTGAGGCAG+TGG + chr3_1:4405168-4405187 Msa0345270:intron 35.0%
GGAGAAACTAGAATCAAAAC+AGG + chr3_1:4405926-4405945 Msa0345270:intron 35.0%
GACCAAATGCCAATAACAAT+TGG + chr3_1:4406341-4406360 Msa0345270:intron 35.0%
GTCAGACACACTAATTAAGT+AGG - chr3_1:4406402-4406421 None:intergenic 35.0%
GTTAGTTATGCTAGGATTTG+TGG + chr3_1:4406442-4406461 Msa0345270:intron 35.0%
GTAAATGATGCTATGACTGT+TGG + chr3_1:4406531-4406550 Msa0345270:intron 35.0%
! TATCTCTTTTAGTGCTCTCA+CGG + chr3_1:4406630-4406649 Msa0345270:intron 35.0%
GATTACAATGAAGGAAGAGA+AGG - chr3_1:4406945-4406964 None:intergenic 35.0%
GAGAGATTCTTCATCTTGAA+AGG - chr3_1:4407024-4407043 None:intergenic 35.0%
! ATTAAGAGTGTACGAGTTGT+TGG + chr3_1:4407176-4407195 Msa0345270:CDS 35.0%
GAGAAGTGAGTGTAAGATTA+AGG + chr3_1:4407532-4407551 Msa0345270:intron 35.0%
! CACTTTGCATTTGTTGAGTA+TGG + chr3_1:4407569-4407588 Msa0345270:intron 35.0%
CAAACTTTGTGATCGAATCT+CGG + chr3_1:4407728-4407747 Msa0345270:intron 35.0%
AAACTTTGTGATCGAATCTC+GGG + chr3_1:4407729-4407748 Msa0345270:intron 35.0%
GAGAATTAAAAGTAGGGGTT+TGG + chr3_1:4407812-4407831 Msa0345270:intron 35.0%
!! GAATGAGAAGTATTCTGAGT+TGG - chr3_1:4408033-4408052 None:intergenic 35.0%
!! GATAGTTTCCTCTGAAACTT+TGG + chr3_1:4408230-4408249 Msa0345270:intron 35.0%
AATAGCATATGAGTATGAGC+TGG - chr3_1:4408348-4408367 None:intergenic 35.0%
AGAATGTTAATTTCCCTCTG+AGG + chr3_1:4408522-4408541 Msa0345270:intron 35.0%
! TAGCAATTTTCATCCTCAGA+GGG - chr3_1:4408538-4408557 None:intergenic 35.0%
! ATAGCAATTTTCATCCTCAG+AGG - chr3_1:4408539-4408558 None:intergenic 35.0%
!! TGTTGGTCACCATTTTTGTT+TGG + chr3_1:4408626-4408645 Msa0345270:intron 35.0%
!! GTTGGTCACCATTTTTGTTT+GGG + chr3_1:4408627-4408646 Msa0345270:intron 35.0%
AAATGATCCCTGCAAATATC+TGG + chr3_1:4408706-4408725 Msa0345270:intron 35.0%
CAAAACACCAGATATTTGCA+GGG - chr3_1:4408716-4408735 None:intergenic 35.0%
!! GATTTTAGTCCCTCAAAACA+AGG - chr3_1:4408878-4408897 None:intergenic 35.0%
!!! CAAAATTTGGTTTTGGTCCT+TGG - chr3_1:4408968-4408987 None:intergenic 35.0%
! GGAAGTAGTATCTGACATTT+TGG - chr3_1:4409040-4409059 None:intergenic 35.0%
CTCTCCGCAATAAATAACAA+AGG + chr3_1:4409195-4409214 Msa0345270:intron 35.0%
ATCACAACAATGACAAGGTT+AGG - chr3_1:4409442-4409461 None:intergenic 35.0%
TGTGTATCACAACAATGACA+AGG - chr3_1:4409447-4409466 None:intergenic 35.0%
TTGTCATTGTTGTGATACAC+AGG + chr3_1:4409446-4409465 Msa0345270:intron 35.0%
TGTCATTGTTGTGATACACA+GGG + chr3_1:4409447-4409466 Msa0345270:intron 35.0%
TCAAGAATATCCCAGGAAAA+TGG - chr3_1:4409503-4409522 None:intergenic 35.0%
AATGACATCAAGAATATCCC+AGG - chr3_1:4409510-4409529 None:intergenic 35.0%
ACACGCAAGAAAATTGAAAG+AGG - chr3_1:4409556-4409575 None:intergenic 35.0%
! TTCTGGTACTTAGCCTATTT+TGG + chr3_1:4409731-4409750 Msa0345270:CDS 35.0%
AGCGGATATTTGATCATGAA+AGG + chr3_1:4409761-4409780 Msa0345270:CDS 35.0%
GCGGATATTTGATCATGAAA+GGG + chr3_1:4409762-4409781 Msa0345270:CDS 35.0%
CGGATATTTGATCATGAAAG+GGG + chr3_1:4409763-4409782 Msa0345270:CDS 35.0%
! TACCATGTCTTACTTGCTTT+TGG + chr3_1:4403070-4403089 Msa0345270:CDS 35.0%
TGTCTATCAGTCTCGAAATT+TGG + chr3_1:4409958-4409977 Msa0345270:CDS 35.0%
GTCTATCAGTCTCGAAATTT+GGG + chr3_1:4409959-4409978 Msa0345270:CDS 35.0%
ATTTAACAGTGGGAAATCCA+TGG + chr3_1:4409993-4410012 Msa0345270:CDS 35.0%
TATATATGTTGTCACCAACG+AGG + chr3_1:4410048-4410067 Msa0345270:CDS 35.0%
AACCATGAATTATGTCAAGC+TGG + chr3_1:4410243-4410262 Msa0345270:CDS 35.0%
TTCCAGCTTGACATAATTCA+TGG - chr3_1:4410248-4410267 None:intergenic 35.0%
TTATGTCAAGCTGGAAACTT+TGG + chr3_1:4410252-4410271 Msa0345270:CDS 35.0%
TATGTCAAGCTGGAAACTTT+GGG + chr3_1:4410253-4410272 Msa0345270:CDS 35.0%
!!! TTGCCTTATTTTATGCTTCG+GGG + chr3_1:4410281-4410300 Msa0345270:CDS 35.0%
TGTTGTGGATGAAAGATTGA+TGG - chr3_1:4410368-4410387 None:intergenic 35.0%
CTTTAGACATCAACGATATG+AGG + chr3_1:4410489-4410508 Msa0345270:CDS 35.0%
ACACACCAGCAAATTCAAAG+AGG - chr3_1:4402748-4402767 None:intergenic 40.0%
! GAGTGATAAACTTTTCGGTC+AGG - chr3_1:4402887-4402906 None:intergenic 40.0%
! TTTTGGCACTTAGCCTATTG+TGG + chr3_1:4402923-4402942 Msa0345270:CDS 40.0%
TTTGGCACTTAGCCTATTGT+GGG + chr3_1:4402924-4402943 Msa0345270:CDS 40.0%
TGCCAAAAGCAAGTAAGACA+TGG - chr3_1:4403075-4403094 None:intergenic 40.0%
!! GTCTTACTTGCTTTTGGCAA+AGG + chr3_1:4403076-4403095 Msa0345270:CDS 40.0%
CCCAACCAAAATTTCGAGAT+TGG - chr3_1:4403159-4403178 None:intergenic 40.0%
TTGGGCTACCTATTCAACAA+AGG + chr3_1:4403174-4403193 Msa0345270:intron 40.0%
TGGGCTACCTATTCAACAAA+GGG + chr3_1:4403175-4403194 Msa0345270:intron 40.0%
AACAAAGGGAAATCCATGGA+AGG + chr3_1:4403189-4403208 Msa0345270:intron 40.0%
ACAAAGTCAACAACCTTCCA+TGG - chr3_1:4403205-4403224 None:intergenic 40.0%
TACACCTATGTTGACCTTGT+CGG - chr3_1:4403257-4403276 None:intergenic 40.0%
GCATGAGGAAGAACTAACAT+TGG - chr3_1:4403329-4403348 None:intergenic 40.0%
TTGGAAACTTTGGGTGACAT+TGG + chr3_1:4403454-4403473 Msa0345270:intron 40.0%
CATTGATAAACCCTGAAAGG+TGG + chr3_1:4403509-4403528 Msa0345270:intron 40.0%
TTGATAAACCCTGAAAGGTG+GGG + chr3_1:4403511-4403530 Msa0345270:intron 40.0%
TTTCAAAACCCCACCTTTCA+GGG - chr3_1:4403522-4403541 None:intergenic 40.0%
TACATTAGGCAAGATCGACA+TGG + chr3_1:4403619-4403638 Msa0345270:CDS 40.0%
! GAAGACCATACTTGTTGGAT+TGG + chr3_1:4403656-4403675 Msa0345270:CDS 40.0%
!!! GGATATTTTTTGTGGTGGTC+CGG + chr3_1:4404166-4404185 Msa0345270:intron 40.0%
!!! GATATTTTTTGTGGTGGTCC+GGG + chr3_1:4404167-4404186 Msa0345270:intron 40.0%
!!! ATATTTTTTGTGGTGGTCCG+GGG + chr3_1:4404168-4404187 Msa0345270:intron 40.0%
AGAATTCTGCGCATTTCATG+CGG + chr3_1:4404463-4404482 Msa0345270:intron 40.0%
AATATGCGCAGGAATACCTA+AGG + chr3_1:4404501-4404520 Msa0345270:intron 40.0%
TTATCCGCAGCAAAATCCTT+AGG - chr3_1:4404520-4404539 None:intergenic 40.0%
GGAAAAGTGGTAGTTACCTT+AGG - chr3_1:4404563-4404582 None:intergenic 40.0%
CACATCTTGTCAAGGACATT+TGG - chr3_1:4404962-4404981 None:intergenic 40.0%
GAATTCCTTACACACACAGT+AGG + chr3_1:4405064-4405083 Msa0345270:intron 40.0%
ATTCCTTACACACACAGTAG+GGG + chr3_1:4405066-4405085 Msa0345270:intron 40.0%
TACGATTACTCTTTCTTGCC+GGG - chr3_1:4405675-4405694 None:intergenic 40.0%
CTACGATTACTCTTTCTTGC+CGG - chr3_1:4405676-4405695 None:intergenic 40.0%
ACAGTGGCTTCTTCTTCATT+TGG - chr3_1:4405989-4406008 None:intergenic 40.0%
TGCTAGCATGATGACTTCTT+TGG + chr3_1:4406232-4406251 Msa0345270:intron 40.0%
TTTAATATTGGGGAGTGGTG+AGG + chr3_1:4406262-4406281 Msa0345270:intron 40.0%
TCGTGAGTTCAACTCTTGTT+GGG + chr3_1:4406577-4406596 Msa0345270:intron 40.0%
TTGTTGGGTCATGACATCTT+TGG + chr3_1:4406592-4406611 Msa0345270:intron 40.0%
TACAATGAAGGAAGAGAAGG+AGG - chr3_1:4406942-4406961 None:intergenic 40.0%
TAACCCTAATGCATCGTCAA+GGG - chr3_1:4407046-4407065 None:intergenic 40.0%
TTAACCCTAATGCATCGTCA+AGG - chr3_1:4407047-4407066 None:intergenic 40.0%
AGGCTGAAAGAATTGATGCT+AGG + chr3_1:4407145-4407164 Msa0345270:CDS 40.0%
GGCTGAAAGAATTGATGCTA+GGG + chr3_1:4407146-4407165 Msa0345270:CDS 40.0%
GACGATGATGAAGAACAAGA+TGG + chr3_1:4407279-4407298 Msa0345270:CDS 40.0%
AGATTTCCCCTAAACCTTGA+GGG - chr3_1:4407624-4407643 None:intergenic 40.0%
AAGATTTCCCCTAAACCTTG+AGG - chr3_1:4407625-4407644 None:intergenic 40.0%
CGAGATTCGATCACAAAGTT+TGG - chr3_1:4407730-4407749 None:intergenic 40.0%
AGTGTATGAACATTCGCGTT+AGG + chr3_1:4408394-4408413 Msa0345270:intron 40.0%
TTTCTTTCCACCTATTCGGA+AGG + chr3_1:4408444-4408463 Msa0345270:intron 40.0%
ATTGGCATGATCCCGAAAAT+GGG + chr3_1:4408580-4408599 Msa0345270:intron 40.0%
CCAAAACACCAGATATTTGC+AGG - chr3_1:4408717-4408736 None:intergenic 40.0%
! CCTGCAAATATCTGGTGTTT+TGG + chr3_1:4408714-4408733 Msa0345270:intron 40.0%
AGACACTTAAAAAGGAACGG+AGG + chr3_1:4409300-4409319 Msa0345270:intron 40.0%
GACACTTAAAAAGGAACGGA+GGG + chr3_1:4409301-4409320 Msa0345270:intron 40.0%
GTCATTGTTGTGATACACAG+GGG + chr3_1:4409448-4409467 Msa0345270:intron 40.0%
GTCATCGAAATCTAGATCTC+TGG - chr3_1:4409534-4409553 None:intergenic 40.0%
TTTCTTGCGTGTGCAAGAAT+TGG + chr3_1:4409564-4409583 Msa0345270:CDS 40.0%
CGAAGACGATCAATCAATTC+TGG + chr3_1:4409714-4409733 Msa0345270:CDS 40.0%
!! GCCTATTTTGGATGTTCTAG+CGG + chr3_1:4409743-4409762 Msa0345270:CDS 40.0%
TCCGCTAGAACATCCAAAAT+AGG - chr3_1:4409747-4409766 None:intergenic 40.0%
TGCCAAAAGCAAGTAAGACA+TGG - chr3_1:4403075-4403094 None:intergenic 40.0%
!! GTCTTACTTGCTTTTGGCAA+AGG + chr3_1:4403076-4403095 Msa0345270:CDS 40.0%
GTCGCTTCATGTAAAAGTTC+TGG + chr3_1:4409926-4409945 Msa0345270:CDS 40.0%
ATCAGTCTCGAAATTTGGGT+TGG + chr3_1:4409963-4409982 Msa0345270:CDS 40.0%
! TCAGTCTCGAAATTTGGGTT+GGG + chr3_1:4409964-4409983 Msa0345270:CDS 40.0%
ACAAAGTCAACAACCTTCCA+TGG - chr3_1:4403205-4403224 None:intergenic 40.0%
TGTGACGTAGATGTTACATC+GGG - chr3_1:4410136-4410155 None:intergenic 40.0%
GTGTGACGTAGATGTTACAT+CGG - chr3_1:4410137-4410156 None:intergenic 40.0%
TAACATCTACGTCACACCTA+AGG + chr3_1:4410140-4410159 Msa0345270:CDS 40.0%
CATCACAGCAAACTAACCTT+AGG - chr3_1:4410159-4410178 None:intergenic 40.0%
!! CTAAGGTTAGTTTGCTGTGA+TGG + chr3_1:4410157-4410176 Msa0345270:CDS 40.0%
!!! CTGTGATGGACAACTTTTAG+TGG + chr3_1:4410171-4410190 Msa0345270:CDS 40.0%
!!! TGCCTTATTTTATGCTTCGG+GGG + chr3_1:4410282-4410301 Msa0345270:CDS 40.0%
TTCCCCCGAAGCATAAAATA+AGG - chr3_1:4410287-4410306 None:intergenic 40.0%
! AAGTAGGCATTTTCCTTTGG+AGG - chr3_1:4410457-4410476 None:intergenic 40.0%
! AGCAAGTAGGCATTTTCCTT+TGG - chr3_1:4410460-4410479 None:intergenic 40.0%
AAAGGAAAATGCCTACTTGC+TGG + chr3_1:4410459-4410478 Msa0345270:CDS 40.0%
! AAAATGCCTACTTGCTGGAT+TGG + chr3_1:4410464-4410483 Msa0345270:CDS 40.0%
TAGACATCAACGATATGAGG+TGG + chr3_1:4410492-4410511 Msa0345270:CDS 40.0%
GACGACCTCTTTGAATTTGC+TGG + chr3_1:4402740-4402759 Msa0345270:CDS 45.0%
TTGCTGGTGTGTGCAAGAAT+TGG + chr3_1:4402756-4402775 Msa0345270:CDS 45.0%
TGGTGTGTGCAAGAATTGGA+GGG + chr3_1:4402760-4402779 Msa0345270:CDS 45.0%
TCCACTAGAAGACCCACAAT+AGG - chr3_1:4402939-4402958 None:intergenic 45.0%
CTCAGAGGAGTTTGTCTTAG+TGG + chr3_1:4403099-4403118 Msa0345270:CDS 45.0%
TATTTACGTCGTCACCGACA+AGG + chr3_1:4403240-4403259 Msa0345270:CDS 45.0%
CTTTCAAAACCCCACCTTTC+AGG - chr3_1:4403523-4403542 None:intergenic 45.0%
AAAGGGAAACATGGGGAACA+AGG - chr3_1:4403776-4403795 None:intergenic 45.0%
TAAGACGTGGATTCCATCAG+TGG - chr3_1:4403962-4403981 None:intergenic 45.0%
TCGAGGCTTTCACTTTGACA+AGG + chr3_1:4404145-4404164 Msa0345270:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr3_1:4404230-4404249 None:intergenic 45.0%
TCTTGAGAACGAATATGCGC+AGG + chr3_1:4404490-4404509 Msa0345270:intron 45.0%
TGCTGCGGATAATGCTACTA+TGG + chr3_1:4404528-4404547 Msa0345270:intron 45.0%
ACTATGGCAGGCAAATCCTA+AGG + chr3_1:4404544-4404563 Msa0345270:intron 45.0%
ATGTCCTTGACAAGATGTGC+CGG + chr3_1:4404963-4404982 Msa0345270:intron 45.0%
AATCCCCTACTGTGTGTGTA+AGG - chr3_1:4405072-4405091 None:intergenic 45.0%
CCACACACTCACACTTATAG+AGG - chr3_1:4405520-4405539 None:intergenic 45.0%
CCTCTATAAGTGTGAGTGTG+TGG + chr3_1:4405517-4405536 Msa0345270:intron 45.0%
TCAAGATGCCCAAATATGCC+CGG + chr3_1:4405654-4405673 Msa0345270:intron 45.0%
CTTTCTTGCCGGGCATATTT+GGG - chr3_1:4405665-4405684 None:intergenic 45.0%
TCTTTCTTGCCGGGCATATT+TGG - chr3_1:4405666-4405685 None:intergenic 45.0%
ATGATGCTATGACTGTTGGC+TGG + chr3_1:4406535-4406554 Msa0345270:intron 45.0%
GAGTTGAACTCACGACATTG+TGG - chr3_1:4406572-4406591 None:intergenic 45.0%
GTCGTGAGTTCAACTCTTGT+TGG + chr3_1:4406576-4406595 Msa0345270:intron 45.0%
TTGGGTCATGACATCTTTGG+TGG + chr3_1:4406595-4406614 Msa0345270:intron 45.0%
! AGTTTAGGTGAGTTGAGCTC+CGG - chr3_1:4406673-4406692 None:intergenic 45.0%
TCTCCCTTGACGATGCATTA+GGG + chr3_1:4407040-4407059 Msa0345270:intron 45.0%
AGAGTGTACGAGTTGTTGGA+CGG + chr3_1:4407180-4407199 Msa0345270:CDS 45.0%
TCATCGTCATCACGATCCAA+TGG - chr3_1:4407267-4407286 None:intergenic 45.0%
AATCACACCTTCAGTTCAGC+TGG + chr3_1:4407344-4407363 Msa0345270:CDS 45.0%
CTTCTTACCTTCCGAATAGG+TGG - chr3_1:4408454-4408473 None:intergenic 45.0%
CGTCTTCTTACCTTCCGAAT+AGG - chr3_1:4408457-4408476 None:intergenic 45.0%
CATTGGCATGATCCCGAAAA+TGG + chr3_1:4408579-4408598 Msa0345270:intron 45.0%
TTGCGTGTGCAAGAATTGGA+GGG + chr3_1:4409568-4409587 Msa0345270:CDS 45.0%
!! ACTTGCTTTTGGCAAAGGCT+CGG + chr3_1:4403081-4403100 Msa0345270:CDS 45.0%
AACAGTGGGAAATCCATGGA+AGG + chr3_1:4409997-4410016 Msa0345270:CDS 45.0%
CAAGTCGAGTACACCTATGA+TGG - chr3_1:4410074-4410093 None:intergenic 45.0%
AGTGGTTCATATTGAGTCCG+AGG + chr3_1:4410189-4410208 Msa0345270:CDS 45.0%
TCTATGCATTGAGCAACCTG+AGG + chr3_1:4410311-4410330 Msa0345270:CDS 45.0%
TAGAACTGGAGTTCCTCCAA+AGG + chr3_1:4410441-4410460 Msa0345270:CDS 45.0%
! AAAGCACCAATCCAGCAAGT+AGG - chr3_1:4410473-4410492 None:intergenic 45.0%
!!! TAAGTTTTTAAATATAAAAA+AGG - chr3_1:4404091-4404110 None:intergenic 5.0%
!!! AAATAAAAAAACATATATTT+TGG + chr3_1:4409385-4409404 Msa0345270:intron 5.0%
CTGGTGTGTGCAAGAATTGG+AGG + chr3_1:4402759-4402778 Msa0345270:CDS 50.0%
TCGGTCAGGTAAGCTGATGA+AGG - chr3_1:4402873-4402892 None:intergenic 50.0%
GCCTATTGTGGGTCTTCTAG+TGG + chr3_1:4402935-4402954 Msa0345270:CDS 50.0%
! TGCTTTTGGCAAAGGCTCAG+AGG + chr3_1:4403084-4403103 Msa0345270:CDS 50.0%
GTCACCGACAAGGTCAACAT+AGG + chr3_1:4403250-4403269 Msa0345270:CDS 50.0%
CATTGTGGAAGCTCCACTGA+TGG + chr3_1:4403946-4403965 Msa0345270:intron 50.0%
AAAGTACGGGATTCGAACCC+CGG - chr3_1:4404188-4404207 None:intergenic 50.0%
ACTCGTGAGCTTAGCTCAGT+TGG - chr3_1:4404235-4404254 None:intergenic 50.0%
GCGGATAATGCTACTATGGC+AGG + chr3_1:4404532-4404551 Msa0345270:intron 50.0%
ATTATTGTCTCCGCGCTCGT+AGG + chr3_1:4404706-4404725 Msa0345270:intron 50.0%
TTATTGTCTCCGCGCTCGTA+GGG + chr3_1:4404707-4404726 Msa0345270:intron 50.0%
TGTCCTTGACAAGATGTGCC+GGG + chr3_1:4404964-4404983 Msa0345270:intron 50.0%
GCTAGGATTTGTGGACCACA+TGG + chr3_1:4406451-4406470 Msa0345270:intron 50.0%
! CTATGACTGTTGGCTGGAGT+TGG + chr3_1:4406541-4406560 Msa0345270:intron 50.0%
! TTTAGGTGAGTTGAGCTCCG+GGG - chr3_1:4406671-4406690 None:intergenic 50.0%
! GTTTAGGTGAGTTGAGCTCC+GGG - chr3_1:4406672-4406691 None:intergenic 50.0%
!! GGCCTATAGATTTGTTGGGC+CGG + chr3_1:4406835-4406854 Msa0345270:intron 50.0%
AGCCGGCCCAACAAATCTAT+AGG - chr3_1:4406840-4406859 None:intergenic 50.0%
!! ATAGATTTGTTGGGCCGGCT+CGG + chr3_1:4406840-4406859 Msa0345270:intron 50.0%
GGAGCATACCGTTGTATCTG+CGG - chr3_1:4406921-4406940 None:intergenic 50.0%
CTCTCCCTTGACGATGCATT+AGG + chr3_1:4407039-4407058 Msa0345270:intron 50.0%
!! TAAGTTGGTAGGGTCCCTCA+AGG + chr3_1:4407607-4407626 Msa0345270:intron 50.0%
GTAGGGTCCCTCAAGGTTTA+GGG + chr3_1:4407614-4407633 Msa0345270:intron 50.0%
TAGGGTCCCTCAAGGTTTAG+GGG + chr3_1:4407615-4407634 Msa0345270:intron 50.0%
GCGAATGTTCACACATGAGC+TGG - chr3_1:4408289-4408308 None:intergenic 50.0%
! GGATGAGAAGTGTGCTGAGT+TGG - chr3_1:4408327-4408346 None:intergenic 50.0%
!! GAACGGAGGGAGTATTTGCA+GGG + chr3_1:4409314-4409333 Msa0345270:intron 50.0%
!! AACGGAGGGAGTATTTGCAG+GGG + chr3_1:4409315-4409334 Msa0345270:intron 50.0%
CTTGCGTGTGCAAGAATTGG+AGG + chr3_1:4409567-4409586 Msa0345270:CDS 50.0%
TCGGTCAGCTATGCTGATGA+AGG - chr3_1:4409681-4409700 None:intergenic 50.0%
TACACCTATGATGGCCTCGT+TGG - chr3_1:4410065-4410084 None:intergenic 50.0%
ATGCATTGAGCAACCTGAGG+AGG + chr3_1:4410314-4410333 Msa0345270:CDS 50.0%
ATTGAGCAACCTGAGGAGGT+GGG + chr3_1:4410318-4410337 Msa0345270:CDS 50.0%
TTTCAAAACCCCACCTCCTC+AGG - chr3_1:4410330-4410349 None:intergenic 50.0%
TAAGCCAAACCCTACGAGCG+CGG - chr3_1:4404719-4404738 None:intergenic 55.0%
CTTCCCGGCACATCTTGTCA+AGG - chr3_1:4404970-4404989 None:intergenic 55.0%
CTCTGTCGCCGCAGATACAA+CGG + chr3_1:4406910-4406929 Msa0345270:intron 55.0%
CCAGTGTCCAGCTGAACTGA+AGG - chr3_1:4407354-4407373 None:intergenic 55.0%
CCTTCAGTTCAGCTGGACAC+TGG + chr3_1:4407351-4407370 Msa0345270:CDS 55.0%
GGTAGGGTCCCTCAAGGTTT+AGG + chr3_1:4407613-4407632 Msa0345270:intron 55.0%
!! GGAACGGAGGGAGTATTTGC+AGG + chr3_1:4409313-4409332 Msa0345270:intron 55.0%
! TGCTTTTGGCAAAGGCTCGG+AGG + chr3_1:4409892-4409911 Msa0345270:CDS 55.0%
GTCACCAACGAGGCCATCAT+AGG + chr3_1:4410058-4410077 Msa0345270:CDS 55.0%
CATTGAGCAACCTGAGGAGG+TGG + chr3_1:4410317-4410336 Msa0345270:CDS 55.0%
TTGAGCAACCTGAGGAGGTG+GGG + chr3_1:4410319-4410338 Msa0345270:CDS 55.0%
AGTTGAGCTCCGGGGCACAT+CGG - chr3_1:4406663-4406682 None:intergenic 60.0%
AGTCGGGTTCATCACCGAGC+CGG - chr3_1:4406857-4406876 None:intergenic 60.0%
CGGCGACAGAGCTGAAGTGA+GGG - chr3_1:4406901-4406920 None:intergenic 60.0%
GTCTCCGCGCTCGTAGGGTT+TGG + chr3_1:4404712-4404731 Msa0345270:intron 65.0%
GGAACCTTGCCGATGTGCCC+CGG + chr3_1:4406651-4406670 Msa0345270:intron 65.0%
GCGGCGACAGAGCTGAAGTG+AGG - chr3_1:4406902-4406921 None:intergenic 65.0%
AGCTCCGGGGCACATCGGCA+AGG - chr3_1:4406658-4406677 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 4402662 4410531 4402662 ID=Msa0345270;Name=Msa0345270
chr3_1 mRNA 4402662 4410531 4402662 ID=Msa0345270-mRNA-1;Parent=Msa0345270;Name=Msa0345270-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0.2|0|6|0|735
chr3_1 exon 4402662 4402895 4402662 ID=Msa0345270-mRNA-1:exon:1423;Parent=Msa0345270-mRNA-1
chr3_1 exon 4402911 4403150 4402911 ID=Msa0345270-mRNA-1:exon:1424;Parent=Msa0345270-mRNA-1
chr3_1 exon 4403211 4403452 4403211 ID=Msa0345270-mRNA-1:exon:1425;Parent=Msa0345270-mRNA-1
chr3_1 exon 4403528 4403717 4403528 ID=Msa0345270-mRNA-1:exon:1426;Parent=Msa0345270-mRNA-1
chr3_1 exon 4407138 4407372 4407138 ID=Msa0345270-mRNA-1:exon:1427;Parent=Msa0345270-mRNA-1
chr3_1 exon 4409468 4410531 4409468 ID=Msa0345270-mRNA-1:exon:1428;Parent=Msa0345270-mRNA-1
chr3_1 CDS 4402662 4402895 4402662 ID=Msa0345270-mRNA-1:cds;Parent=Msa0345270-mRNA-1
chr3_1 CDS 4402911 4403150 4402911 ID=Msa0345270-mRNA-1:cds;Parent=Msa0345270-mRNA-1
chr3_1 CDS 4403211 4403452 4403211 ID=Msa0345270-mRNA-1:cds;Parent=Msa0345270-mRNA-1
chr3_1 CDS 4403528 4403717 4403528 ID=Msa0345270-mRNA-1:cds;Parent=Msa0345270-mRNA-1
chr3_1 CDS 4407138 4407372 4407138 ID=Msa0345270-mRNA-1:cds;Parent=Msa0345270-mRNA-1
chr3_1 CDS 4409468 4410531 4409468 ID=Msa0345270-mRNA-1:cds;Parent=Msa0345270-mRNA-1
Gene Sequence

>Msa0345270

TCCAAAAAGAAGAAGGTAGCAGATGATTTTTTAGTTCCTTGGGATTTGCTTGATATCATTTCTAGAAAACTAGATTTTGACGACCTCTTTGAATTTGCTGGTGTGTGCAAGAATTGGAGGGAATTTCATAAAATTTATTGGAGAAATTTCTTGGCATCTGAAGAACCATTACTTGTTCAAAAGTCTTCCCATTATGAGAAATCTTTTTCCTTCATCAGCTTACCTGACCGAAAAGTGATCAATCACTTTTGGCACTTAGCCTATTGTGGGTCTTCTAGTGGATATTTGATCATGACAACGCAAAATAATTCATTTATGCTAATGAATCTATTTACAAGAAGAAAGATGGAAATCAATACATCATCCTTTAAAGTAAAGTTTTCTACTTTTGCTTACCATGTCTTACTTGCTTTTGGCAAAGGCTCAGAGGAGTTTGTCTTAGTGGCTTTATGTAAAAGTTCTGGCAGTTTGCATGTTGTTGACTTTGTTGTTTTTCATAATACTATTTACGTCGTCACCGACAAGGTCAACATAGGTGTACTCGACTTGAATTATGCAAATATAACATTTTTAGAACTTAAGAGTACTCCCAATGTTAGTTCTTCCTCATGCATAAGGATGATTAGTTGTGATGGACAACTTTTAGTGATTCATATTACATCTCAAGAAATATTAAATGTGTACAAGATCGACTTCTCAATCAAGAATTTTGTCAAGTGGGGTTTTGAAAGAAACTCTTTGTATGCCATCAATCTTTCATCTATCAAATGCATAGTATGTTTAGGGGATGTCAACAAACTGCCAAAATACATTAGGCAAGATCGACATGGAATCTATGCTAGAAGAAGACCATACTTGTTGGATTGGTGTTTTAAACATCTACACTATGAGGTGGATTATTCTCTAGATTACAAGGCTGAAAGAATTGATGCTAGGGTTGTCAAATTAAGAGTGTACGAGTTGTTGGACGGCCATGAAGATTTAATTTTGAGATTCAACACCTTCTTGCCAACTAAATATGAAATCAAACTTCCATTGGATCGTGATGACGATGATGAAGAACAAGATGGTCGAATGACAAAGACAAATATCAAAGTGCTAAAGAAATATCGAATCACACCTTCAGTTCAGCTGGACACTGGGGAAGCCATGAATAACATAGAAGATAATTGTCCATTTTCCTGGGATATTCTTGATGTCATTTCCAGAGATCTAGATTTCGATGACCTCTTTCAATTTTCTTGCGTGTGCAAGAATTGGAGGGAGTTTCATAAAATTTACTGGAAAAAATTCTTGGCATCCCAAGAACCATTAGTTATTAAAAAGTCTTACCATGATAAGAAATTCTTTTCCTTCATCAGCATAGCTGACCGAAAAGTTTATCACTCGAAGACGATCAATCAATTCTGGTACTTAGCCTATTTTGGATGTTCTAGCGGATATTTGATCATGAAAGGGGACAATAATTCTTTTCTGCTATTAAATCCATTTACAAGAAGAAAGAAGGTAATCAATACATCAACCTTTAAAGTCAATTCTACATATTTTGCTTACCATGTCTTACTTGCTTTTGGCAAAGGCTCGGAGGAATTTGTCTTAGTCGCTTCATGTAAAAGTTCTGGCAGTTTGTATGTCTATCAGTCTCGAAATTTGGGTTGGGTTACATATTTAACAGTGGGAAATCCATGGAAGGTTGTTGACTTTGTTGTGTTGCATAATACTATATATGTTGTCACCAACGAGGCCATCATAGGTGTACTCGACTTGAATTCCTCAAATATAAATTTTTTAGAAATGAAGAGTATGCCCGATGTAACATCTACGTCACACCTAAGGTTAGTTTGCTGTGATGGACAACTTTTAGTGGTTCATATTGAGTCCGAGGAAATATTGAATGTTTACAAGGTAGACTTCTCAACCATGAATTATGTCAAGCTGGAAACTTTGGGTGACATTGCCTTATTTTATGCTTCGGGGGAATACTTCTATGCATTGAGCAACCTGAGGAGGTGGGGTTTTGAAAGCAACTCTTTGTATGCCATCAATCTTTCATCCACAACATGTAAAGTGTGTTTAGGGGATGATAACAGACTGCCAAAATACATTAAGCATGATAGAACTGGAGTTCCTCCAAAGGAAAATGCCTACTTGCTGGATTGGTGCTTTAGACATCAACGATATGAGGTGGATTTTTCTCCAAATGAG

Protein sequence

>Msa0345270

SKKKKVADDFLVPWDLLDIISRKLDFDDLFEFAGVCKNWREFHKIYWRNFLASEEPLLVQKSSHYEKSFSFISLPDRKVINHFWHLAYCGSSSGYLIMTTQNNSFMLMNLFTRRKMEINTSSFKVKFSTFAYHVLLAFGKGSEEFVLVALCKSSGSLHVVDFVVFHNTIYVVTDKVNIGVLDLNYANITFLELKSTPNVSSSSCIRMISCDGQLLVIHITSQEILNVYKIDFSIKNFVKWGFERNSLYAINLSSIKCIVCLGDVNKLPKYIRQDRHGIYARRRPYLLDWCFKHLHYEVDYSLDYKAERIDARVVKLRVYELLDGHEDLILRFNTFLPTKYEIKLPLDRDDDDEEQDGRMTKTNIKVLKKYRITPSVQLDTGEAMNNIEDNCPFSWDILDVISRDLDFDDLFQFSCVCKNWREFHKIYWKKFLASQEPLVIKKSYHDKKFFSFISIADRKVYHSKTINQFWYLAYFGCSSGYLIMKGDNNSFLLLNPFTRRKKVINTSTFKVNSTYFAYHVLLAFGKGSEEFVLVASCKSSGSLYVYQSRNLGWVTYLTVGNPWKVVDFVVLHNTIYVVTNEAIIGVLDLNSSNINFLEMKSMPDVTSTSHLRLVCCDGQLLVVHIESEEILNVYKVDFSTMNYVKLETLGDIALFYASGEYFYALSNLRRWGFESNSLYAINLSSTTCKVCLGDDNRLPKYIKHDRTGVPPKENAYLLDWCFRHQRYEVDFSPNE