Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0345270 | XP_039688272.1 | 60.632 | 348 | 87 | 3 | 6 | 303 | 121 | 468 | 1.65e-131 | 408 |
Msa0345270 | XP_039688272.1 | 93.764 | 433 | 27 | 0 | 303 | 735 | 37 | 469 | 0.0 | 820 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0345270 | G7J085 | 60.632 | 348 | 87 | 3 | 6 | 303 | 121 | 468 | 7.86e-132 | 408 |
Msa0345270 | G7J085 | 93.764 | 433 | 27 | 0 | 303 | 735 | 37 | 469 | 0.0 | 820 |
Gene ID | Type | Classification |
---|---|---|
Msa0345270 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0345270 | Msa0488140 | 0.858164 | 9.943216e-63 | -8.615850e-47 |
Msa0345270 | Msa0804410 | 0.862888 | 3.683359e-64 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0345270 | MtrunA17_Chr3g0077801 | 93.750 | 352 | 22 | 0 | 384 | 735 | 1 | 352 | 0.0 | 687 |
Msa0345270 | MtrunA17_Chr3g0077801 | 60.632 | 348 | 87 | 3 | 6 | 303 | 4 | 351 | 1.88e-136 | 406 |
Msa0345270 | MtrunA17_Chr3g0077901 | 80.114 | 352 | 20 | 3 | 1 | 302 | 19 | 370 | 0.0 | 544 |
Msa0345270 | MtrunA17_Chr3g0077901 | 69.034 | 352 | 109 | 0 | 380 | 731 | 17 | 368 | 1.39e-177 | 512 |
Msa0345270 | MtrunA17_Chr3g0077851 | 73.494 | 332 | 88 | 0 | 400 | 731 | 1 | 332 | 1.00e-176 | 508 |
Msa0345270 | MtrunA17_Chr3g0077851 | 76.647 | 334 | 28 | 3 | 19 | 302 | 1 | 334 | 2.21e-173 | 499 |
Msa0345270 | MtrunA17_Chr4g0075971 | 60.000 | 435 | 134 | 4 | 303 | 732 | 200 | 599 | 5.80e-165 | 488 |
Msa0345270 | MtrunA17_Chr4g0075971 | 58.239 | 352 | 95 | 5 | 1 | 302 | 251 | 600 | 7.97e-117 | 364 |
Msa0345270 | MtrunA17_Chr6g0488101 | 48.747 | 439 | 187 | 8 | 303 | 732 | 43 | 452 | 1.20e-131 | 397 |
Msa0345270 | MtrunA17_Chr6g0488101 | 51.117 | 358 | 118 | 6 | 1 | 302 | 97 | 453 | 1.40e-103 | 325 |
Msa0345270 | MtrunA17_Chr6g0488271 | 48.519 | 439 | 188 | 8 | 303 | 732 | 3 | 412 | 7.82e-131 | 394 |
Msa0345270 | MtrunA17_Chr6g0488271 | 51.117 | 358 | 118 | 6 | 1 | 302 | 57 | 413 | 2.59e-104 | 325 |
Msa0345270 | MtrunA17_Chr3g0112311 | 57.263 | 358 | 140 | 4 | 384 | 732 | 1 | 354 | 2.47e-128 | 385 |
Msa0345270 | MtrunA17_Chr3g0112311 | 52.809 | 356 | 111 | 6 | 4 | 303 | 2 | 356 | 8.30e-102 | 317 |
Msa0345270 | MtrunA17_Chr3g0093911 | 56.374 | 353 | 144 | 5 | 384 | 732 | 1 | 347 | 1.28e-120 | 365 |
Msa0345270 | MtrunA17_Chr3g0093911 | 46.724 | 351 | 131 | 6 | 4 | 302 | 2 | 348 | 3.69e-83 | 268 |
Msa0345270 | MtrunA17_Chr7g0252101 | 50.229 | 436 | 163 | 10 | 303 | 732 | 42 | 429 | 2.97e-119 | 365 |
Msa0345270 | MtrunA17_Chr7g0252101 | 47.025 | 353 | 124 | 10 | 5 | 302 | 86 | 430 | 7.46e-78 | 256 |
Msa0345270 | MtrunA17_Chr1g0207351 | 56.338 | 355 | 138 | 6 | 388 | 732 | 16 | 363 | 6.30e-118 | 358 |
Msa0345270 | MtrunA17_Chr1g0207351 | 49.425 | 348 | 115 | 7 | 12 | 302 | 21 | 364 | 7.66e-88 | 280 |
Msa0345270 | MtrunA17_Chr7g0243331 | 56.105 | 344 | 147 | 4 | 390 | 732 | 7 | 347 | 4.40e-117 | 356 |
Msa0345270 | MtrunA17_Chr7g0243331 | 46.532 | 346 | 133 | 6 | 7 | 302 | 5 | 348 | 2.97e-81 | 263 |
Msa0345270 | MtrunA17_Chr6g0452641 | 56.494 | 308 | 122 | 3 | 434 | 732 | 33 | 337 | 5.96e-102 | 316 |
Msa0345270 | MtrunA17_Chr6g0452641 | 45.970 | 335 | 120 | 8 | 28 | 302 | 5 | 338 | 6.63e-69 | 229 |
Msa0345270 | MtrunA17_Chr1g0209051 | 58.209 | 268 | 104 | 3 | 469 | 732 | 5 | 268 | 1.70e-91 | 286 |
Msa0345270 | MtrunA17_Chr1g0209051 | 43.321 | 277 | 96 | 4 | 79 | 302 | 1 | 269 | 2.85e-56 | 193 |
Msa0345270 | MtrunA17_Chr3g0122991 | 47.352 | 321 | 109 | 4 | 389 | 699 | 5 | 275 | 1.71e-87 | 276 |
Msa0345270 | MtrunA17_Chr3g0122991 | 46.053 | 304 | 94 | 6 | 5 | 268 | 2 | 275 | 3.35e-70 | 231 |
Msa0345270 | MtrunA17_Chr3g0123471 | 57.034 | 263 | 107 | 4 | 466 | 727 | 2 | 259 | 4.12e-83 | 264 |
Msa0345270 | MtrunA17_Chr3g0123471 | 45.977 | 261 | 96 | 5 | 79 | 296 | 1 | 259 | 2.58e-57 | 196 |
Msa0345270 | MtrunA17_Chr7g0243391 | 52.336 | 214 | 100 | 1 | 380 | 593 | 14 | 225 | 1.02e-59 | 201 |
Msa0345270 | MtrunA17_Chr7g0243391 | 47.847 | 209 | 86 | 2 | 2 | 187 | 17 | 225 | 7.56e-43 | 155 |
Msa0345270 | MtrunA17_Chr1g0202841 | 54.802 | 177 | 76 | 2 | 559 | 732 | 1 | 176 | 9.87e-54 | 183 |
Msa0345270 | MtrunA17_Chr1g0202841 | 42.373 | 177 | 73 | 2 | 154 | 302 | 2 | 177 | 3.44e-32 | 123 |
Msa0345270 | MtrunA17_Chr4g0075861 | 51.980 | 202 | 69 | 2 | 303 | 504 | 200 | 373 | 2.47e-50 | 180 |
Msa0345270 | MtrunA17_Chr4g0075861 | 67.480 | 123 | 35 | 1 | 1 | 118 | 251 | 373 | 2.48e-40 | 152 |
Msa0345270 | MtrunA17_Chr6g0486591 | 51.282 | 156 | 67 | 3 | 586 | 732 | 1 | 156 | 3.38e-43 | 153 |
Msa0345270 | MtrunA17_Chr6g0486591 | 42.675 | 157 | 56 | 4 | 180 | 302 | 1 | 157 | 8.27e-28 | 110 |
Msa0345270 | MtrunA17_Chr1g0196231 | 52.632 | 152 | 67 | 3 | 376 | 526 | 219 | 366 | 8.47e-41 | 153 |
Msa0345270 | MtrunA17_Chr1g0196231 | 55.556 | 144 | 56 | 3 | 2 | 140 | 226 | 366 | 6.68e-38 | 145 |
Msa0345270 | MtrunA17_Chr3g0077811 | 93.671 | 79 | 5 | 0 | 303 | 381 | 42 | 120 | 8.85e-36 | 131 |
Msa0345270 | MtrunA17_Chr1g0206951 | 59.292 | 113 | 40 | 2 | 6 | 112 | 2 | 114 | 1.92e-35 | 130 |
Msa0345270 | MtrunA17_Chr1g0206951 | 53.097 | 113 | 52 | 1 | 387 | 498 | 2 | 114 | 8.07e-32 | 120 |
Msa0345270 | MtrunA17_Chr1g0187941 | 53.488 | 129 | 57 | 1 | 565 | 690 | 7 | 135 | 7.25e-33 | 123 |
Msa0345270 | MtrunA17_Chr1g0187941 | 41.085 | 129 | 48 | 1 | 159 | 259 | 7 | 135 | 1.93e-19 | 85.1 |
Msa0345270 | MtrunA17_Chr1g0209191 | 56.250 | 96 | 38 | 1 | 641 | 732 | 1 | 96 | 5.23e-28 | 108 |
Msa0345270 | MtrunA17_Chr1g0209191 | 40.506 | 79 | 35 | 2 | 232 | 302 | 23 | 97 | 9.08e-11 | 59.3 |
Msa0345270 | MtrunA17_Chr7g0238781 | 43.284 | 134 | 74 | 2 | 416 | 549 | 27 | 158 | 2.62e-26 | 105 |
Msa0345270 | MtrunA17_Chr7g0238781 | 43.411 | 129 | 68 | 2 | 35 | 159 | 27 | 154 | 8.15e-23 | 95.9 |
Msa0345270 | MtrunA17_Chr6g0459061 | 27.797 | 295 | 205 | 6 | 396 | 688 | 22 | 310 | 1.96e-25 | 108 |
Msa0345270 | MtrunA17_Chr6g0459061 | 24.597 | 248 | 163 | 5 | 15 | 239 | 22 | 268 | 7.09e-16 | 80.1 |
Msa0345270 | MtrunA17_Chr3g0077881 | 77.049 | 61 | 13 | 1 | 303 | 362 | 37 | 97 | 5.75e-24 | 99.4 |
Msa0345270 | MtrunA17_Chr1g0196241 | 68.056 | 72 | 22 | 1 | 632 | 702 | 3 | 74 | 1.04e-23 | 95.9 |
Msa0345270 | MtrunA17_Chr3g0077891 | 80.328 | 61 | 11 | 1 | 303 | 362 | 37 | 97 | 1.98e-20 | 89.4 |
Msa0345270 | MtrunA17_Chr3g0077911 | 70.690 | 58 | 17 | 0 | 298 | 355 | 28 | 85 | 8.16e-20 | 87.0 |
Msa0345270 | MtrunA17_Chr3g0077941 | 80.000 | 60 | 12 | 0 | 303 | 362 | 37 | 96 | 1.81e-19 | 86.7 |
Msa0345270 | MtrunA17_Chr3g0077861 | 70.370 | 54 | 16 | 0 | 302 | 355 | 32 | 85 | 7.62e-18 | 81.6 |
Msa0345270 | MtrunA17_Chr1g0209061 | 57.407 | 54 | 22 | 1 | 371 | 423 | 54 | 107 | 2.36e-14 | 69.7 |
Msa0345270 | MtrunA17_Chr1g0209061 | 70.732 | 41 | 12 | 0 | 2 | 42 | 67 | 107 | 2.73e-13 | 66.6 |
Msa0345270 | MtrunA17_Chr1g0205811 | 56.364 | 55 | 22 | 1 | 303 | 357 | 42 | 94 | 3.11e-12 | 64.3 |
Msa0345270 | MtrunA17_Chr1g0205821 | 61.111 | 54 | 19 | 1 | 303 | 356 | 41 | 92 | 8.39e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 121 sgRNAs with CRISPR-Local
Find 487 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTGGTACTTAGCCTATTT+TGG | 0.108241 | 3_1:+4409731 | Msa0345270:CDS |
AGTAGAAAACTTTACTTTAA+AGG | 0.129713 | 3_1:-4403041 | None:intergenic |
ACCTTCTTTCTTCTTGTAAA+TGG | 0.145840 | 3_1:-4409812 | None:intergenic |
TGTCTATCAGTCTCGAAATT+TGG | 0.157460 | 3_1:+4409958 | Msa0345270:CDS |
CGATCTTGCCTAATGTATTT+TGG | 0.185757 | 3_1:-4403613 | None:intergenic |
GGGAATTTCATAAAATTTAT+TGG | 0.195974 | 3_1:+4402780 | Msa0345270:CDS |
CTATCATGCTTAATGTATTT+TGG | 0.196702 | 3_1:-4410421 | None:intergenic |
ATATGTAGAATTGACTTTAA+AGG | 0.213151 | 3_1:-4409849 | None:intergenic |
TACCATGTCTTACTTGCTTT+TGG | 0.226717 | 3_1:+4403070 | Msa0345270:CDS |
TACCATGTCTTACTTGCTTT+TGG | 0.226717 | 3_1:+4409878 | Msa0345270:CDS |
AATTTATTGGAGAAATTTCT+TGG | 0.271876 | 3_1:+4402793 | Msa0345270:CDS |
GGGAGTTTCATAAAATTTAC+TGG | 0.278281 | 3_1:+4409588 | Msa0345270:CDS |
ATTATCTTCTATGTTATTCA+TGG | 0.297170 | 3_1:-4409474 | None:intergenic |
ACAACATGTAAAGTGTGTTT+AGG | 0.310726 | 3_1:+4410382 | Msa0345270:CDS |
ATCTCAAAATTAAATCTTCA+TGG | 0.311366 | 3_1:-4407203 | None:intergenic |
CTCAGAGGAGTTTGTCTTAG+TGG | 0.311907 | 3_1:+4403099 | Msa0345270:CDS |
ATCAAATGCATAGTATGTTT+AGG | 0.314526 | 3_1:+4403574 | Msa0345270:CDS |
TCAAGAATATCCCAGGAAAA+TGG | 0.316158 | 3_1:-4409500 | None:intergenic |
TCAAATGCATAGTATGTTTA+GGG | 0.321365 | 3_1:+4403575 | Msa0345270:CDS |
GACGACCTCTTTGAATTTGC+TGG | 0.321873 | 3_1:+4402740 | Msa0345270:CDS |
GTCTATCAGTCTCGAAATTT+GGG | 0.331483 | 3_1:+4409959 | Msa0345270:CDS |
CAACATGTAAAGTGTGTTTA+GGG | 0.332853 | 3_1:+4410383 | Msa0345270:CDS |
GTCGCTTCATGTAAAAGTTC+TGG | 0.333120 | 3_1:+4409926 | Msa0345270:CDS |
CAAAGGTGATCAATCACTTT+TGG | 0.340937 | 3_1:+4402906 | Msa0345270:intron |
TTCCAGCTTGACATAATTCA+TGG | 0.341057 | 3_1:-4410245 | None:intergenic |
TTTAATAACTAATGGTTCTT+GGG | 0.345665 | 3_1:-4409627 | None:intergenic |
CAATAACCATGTTACTCATT+TGG | 0.348533 | 3_1:-4410523 | None:intergenic |
TTTCTTGCGTGTGCAAGAAT+TGG | 0.355227 | 3_1:+4409564 | Msa0345270:CDS |
GTGGCTTTATGTAAAAGTTC+TGG | 0.359573 | 3_1:+4403118 | Msa0345270:CDS |
CGAAGACGATCAATCAATTC+TGG | 0.363197 | 3_1:+4409714 | Msa0345270:CDS |
TCCGCTAGAACATCCAAAAT+AGG | 0.373337 | 3_1:-4409744 | None:intergenic |
ATTAAGAGTGTACGAGTTGT+TGG | 0.382597 | 3_1:+4407176 | Msa0345270:CDS |
AAAGGAAAATGCCTACTTGC+TGG | 0.383831 | 3_1:+4410459 | Msa0345270:CDS |
TTTCAAAACCCCACCTCCTC+AGG | 0.410146 | 3_1:-4410327 | None:intergenic |
TTTGGCACTTAGCCTATTGT+GGG | 0.419830 | 3_1:+4402924 | Msa0345270:CDS |
TTAGTTCTTCCTCATGCATA+AGG | 0.423714 | 3_1:+4403332 | Msa0345270:CDS |
TACATTAAGCATGATAGAAC+TGG | 0.424208 | 3_1:+4410427 | Msa0345270:CDS |
TTGCTGGTGTGTGCAAGAAT+TGG | 0.427087 | 3_1:+4402756 | Msa0345270:CDS |
ACAAACTGCCAAAATACATT+AGG | 0.431460 | 3_1:+4403605 | Msa0345270:CDS |
AGGAAAAGAATTTCTTATCA+TGG | 0.433315 | 3_1:-4409658 | None:intergenic |
TTTGATAGATGAAAGATTGA+TGG | 0.433680 | 3_1:-4403557 | None:intergenic |
TAAACACACTTTACATGTTG+TGG | 0.439177 | 3_1:-4410380 | None:intergenic |
AAACACCAATCCAACAAGTA+TGG | 0.440540 | 3_1:-4403661 | None:intergenic |
TTATGTCAAGCTGGAAACTT+TGG | 0.444741 | 3_1:+4410252 | Msa0345270:CDS |
AGTTTGATTTCATATTTAGT+TGG | 0.445957 | 3_1:-4407240 | None:intergenic |
ATCAGTCTCGAAATTTGGGT+TGG | 0.448207 | 3_1:+4409963 | Msa0345270:CDS |
TATGTCAAGCTGGAAACTTT+GGG | 0.448977 | 3_1:+4410253 | Msa0345270:CDS |
GCCTATTGTGGGTCTTCTAG+TGG | 0.450870 | 3_1:+4402935 | Msa0345270:CDS |
GTCATCGAAATCTAGATCTC+TGG | 0.451722 | 3_1:-4409531 | None:intergenic |
TCAGTCTCGAAATTTGGGTT+GGG | 0.465385 | 3_1:+4409964 | Msa0345270:CDS |
TTCATATTTAGTTGGCAAGA+AGG | 0.469109 | 3_1:-4407232 | None:intergenic |
CTAAGGTTAGTTTGCTGTGA+TGG | 0.475690 | 3_1:+4410157 | Msa0345270:CDS |
TCTATTTACAAGAAGAAAGA+TGG | 0.476603 | 3_1:+4403003 | Msa0345270:CDS |
ATATGAAATCAAACTTCCAT+TGG | 0.479714 | 3_1:+4407248 | Msa0345270:CDS |
GAAGACCATACTTGTTGGAT+TGG | 0.481190 | 3_1:+4403656 | Msa0345270:CDS |
AGCGGATATTTGATCATGAA+AGG | 0.482955 | 3_1:+4409761 | Msa0345270:CDS |
TACACCTATGTTGACCTTGT+CGG | 0.484152 | 3_1:-4403254 | None:intergenic |
CATTGAGCAACCTGAGGAGG+TGG | 0.488223 | 3_1:+4410317 | Msa0345270:CDS |
TAGAAGAAGACCATACTTGT+TGG | 0.489906 | 3_1:+4403651 | Msa0345270:CDS |
AAAATGCCTACTTGCTGGAT+TGG | 0.490737 | 3_1:+4410464 | Msa0345270:CDS |
GTAAACATTCAATATTTCCT+CGG | 0.492474 | 3_1:-4410206 | None:intergenic |
ACAAAGTCAACAACCTTCCA+TGG | 0.493618 | 3_1:-4410010 | None:intergenic |
CTTGCGTGTGCAAGAATTGG+AGG | 0.496446 | 3_1:+4409567 | Msa0345270:CDS |
TCCATTTACAAGAAGAAAGA+AGG | 0.500617 | 3_1:+4409811 | Msa0345270:CDS |
GCGGATATTTGATCATGAAA+GGG | 0.505605 | 3_1:+4409762 | Msa0345270:CDS |
AACCATGAATTATGTCAAGC+TGG | 0.505920 | 3_1:+4410243 | Msa0345270:CDS |
TCGGTCAGCTATGCTGATGA+AGG | 0.509137 | 3_1:-4409678 | None:intergenic |
GTCACCAACGAGGCCATCAT+AGG | 0.512536 | 3_1:+4410058 | Msa0345270:CDS |
ACAAATTATGAAGGATTACA+AGG | 0.516015 | 3_1:+4407125 | Msa0345270:intron |
AATCACACCTTCAGTTCAGC+TGG | 0.522086 | 3_1:+4407344 | Msa0345270:CDS |
TCCACTAGAAGACCCACAAT+AGG | 0.522549 | 3_1:-4402936 | None:intergenic |
CATCACAGCAAACTAACCTT+AGG | 0.524454 | 3_1:-4410156 | None:intergenic |
TCGGTCAGGTAAGCTGATGA+AGG | 0.528144 | 3_1:-4402870 | None:intergenic |
CATGAGGAAGAACTAACATT+GGG | 0.529241 | 3_1:-4403325 | None:intergenic |
GGCTGAAAGAATTGATGCTA+GGG | 0.536935 | 3_1:+4407146 | Msa0345270:CDS |
CAAGTCGAGTACACCTATGA+TGG | 0.537478 | 3_1:-4410071 | None:intergenic |
AGGCTGAAAGAATTGATGCT+AGG | 0.540522 | 3_1:+4407145 | Msa0345270:CDS |
GGAAATATTGAATGTTTACA+AGG | 0.540759 | 3_1:+4410210 | Msa0345270:CDS |
TGTTGTGGATGAAAGATTGA+TGG | 0.544678 | 3_1:-4410365 | None:intergenic |
TGGGTTACATATTTAACAGT+GGG | 0.544949 | 3_1:+4409983 | Msa0345270:CDS |
CTTTAGACATCAACGATATG+AGG | 0.560266 | 3_1:+4410489 | Msa0345270:CDS |
GCATGAGGAAGAACTAACAT+TGG | 0.560385 | 3_1:-4403326 | None:intergenic |
ATTTAACAGTGGGAAATCCA+TGG | 0.561286 | 3_1:+4409993 | Msa0345270:CDS |
TACACCTATGATGGCCTCGT+TGG | 0.570402 | 3_1:-4410062 | None:intergenic |
AATGACATCAAGAATATCCC+AGG | 0.580022 | 3_1:-4409507 | None:intergenic |
AGTGGTTCATATTGAGTCCG+AGG | 0.581618 | 3_1:+4410189 | Msa0345270:CDS |
CCAGTGTCCAGCTGAACTGA+AGG | 0.581775 | 3_1:-4407351 | None:intergenic |
CTGGTGTGTGCAAGAATTGG+AGG | 0.583364 | 3_1:+4402759 | Msa0345270:CDS |
CCTTCAGTTCAGCTGGACAC+TGG | 0.584057 | 3_1:+4407351 | Msa0345270:CDS |
TCATCGTCATCACGATCCAA+TGG | 0.590882 | 3_1:-4407264 | None:intergenic |
TAACATCTACGTCACACCTA+AGG | 0.591743 | 3_1:+4410140 | Msa0345270:CDS |
TTGCGTGTGCAAGAATTGGA+GGG | 0.591841 | 3_1:+4409568 | Msa0345270:CDS |
ACACGCAAGAAAATTGAAAG+AGG | 0.594871 | 3_1:-4409553 | None:intergenic |
TGTGACGTAGATGTTACATC+GGG | 0.598252 | 3_1:-4410133 | None:intergenic |
TAAACATCTACACTATGAGG+TGG | 0.602066 | 3_1:+4403684 | Msa0345270:CDS |
TTGAGCAACCTGAGGAGGTG+GGG | 0.603109 | 3_1:+4410319 | Msa0345270:CDS |
AACAGTGGGAAATCCATGGA+AGG | 0.604878 | 3_1:+4409997 | Msa0345270:CDS |
ATTGAGCAACCTGAGGAGGT+GGG | 0.606051 | 3_1:+4410318 | Msa0345270:CDS |
TACATTAGGCAAGATCGACA+TGG | 0.609700 | 3_1:+4403619 | Msa0345270:CDS |
TAGACATCAACGATATGAGG+TGG | 0.615065 | 3_1:+4410492 | Msa0345270:CDS |
TTGGGTTACATATTTAACAG+TGG | 0.618018 | 3_1:+4409982 | Msa0345270:CDS |
AAAGCACCAATCCAGCAAGT+AGG | 0.620337 | 3_1:-4410470 | None:intergenic |
CGGATATTTGATCATGAAAG+GGG | 0.623275 | 3_1:+4409763 | Msa0345270:CDS |
GTGTGACGTAGATGTTACAT+CGG | 0.623306 | 3_1:-4410134 | None:intergenic |
TATTTACGTCGTCACCGACA+AGG | 0.624444 | 3_1:+4403240 | Msa0345270:CDS |
AGAGTGTACGAGTTGTTGGA+CGG | 0.625456 | 3_1:+4407180 | Msa0345270:CDS |
TAGAACTGGAGTTCCTCCAA+AGG | 0.630462 | 3_1:+4410441 | Msa0345270:CDS |
ATGCATTGAGCAACCTGAGG+AGG | 0.630478 | 3_1:+4410314 | Msa0345270:CDS |
ATAAGGATGATTAGTTGTGA+TGG | 0.632071 | 3_1:+4403349 | Msa0345270:CDS |
ACTAATCATCCTTATGCATG+AGG | 0.641975 | 3_1:-4403341 | None:intergenic |
ATGATATCAAGCAAATCCCA+AGG | 0.642250 | 3_1:-4402698 | None:intergenic |
TGCCAAAAGCAAGTAAGACA+TGG | 0.647599 | 3_1:-4403072 | None:intergenic |
TGCCAAAAGCAAGTAAGACA+TGG | 0.647599 | 3_1:-4409880 | None:intergenic |
GTCACCGACAAGGTCAACAT+AGG | 0.650684 | 3_1:+4403250 | Msa0345270:CDS |
ACACACCAGCAAATTCAAAG+AGG | 0.672639 | 3_1:-4402745 | None:intergenic |
CAAATGCATAGTATGTTTAG+GGG | 0.675474 | 3_1:+4403576 | Msa0345270:CDS |
TCTATGCATTGAGCAACCTG+AGG | 0.699387 | 3_1:+4410311 | Msa0345270:CDS |
AACATGTAAAGTGTGTTTAG+GGG | 0.701783 | 3_1:+4410384 | Msa0345270:CDS |
GACGATGATGAAGAACAAGA+TGG | 0.708057 | 3_1:+4407279 | Msa0345270:CDS |
TGGTGTGTGCAAGAATTGGA+GGG | 0.716460 | 3_1:+4402760 | Msa0345270:CDS |
TATATATGTTGTCACCAACG+AGG | 0.759362 | 3_1:+4410048 | Msa0345270:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCAATACAAAATATAATAA+AGG | - | chr3_1:4403868-4403887 | None:intergenic | 10.0% |
!!! | TTTATTATATTTTGTATTGA+TGG | + | chr3_1:4403867-4403886 | Msa0345270:intron | 10.0% |
!! | TAAAAATAGTAAAAGTTTAT+TGG | - | chr3_1:4404908-4404927 | None:intergenic | 10.0% |
!! | TGATAATCAAAATAAAAAAT+AGG | + | chr3_1:4405105-4405124 | Msa0345270:intron | 10.0% |
!!! | TTTTTTATAAGAAAAAGTTT+AGG | - | chr3_1:4406688-4406707 | None:intergenic | 10.0% |
!!! | AATTTAGTTGTTAATTTTAA+AGG | + | chr3_1:4406788-4406807 | Msa0345270:intron | 10.0% |
!!! | ATTTAGTTGTTAATTTTAAA+GGG | + | chr3_1:4406789-4406808 | Msa0345270:intron | 10.0% |
!! | ATTATTAAATTTCAATCTTA+GGG | - | chr3_1:4407690-4407709 | None:intergenic | 10.0% |
!! | TATTATTAAATTTCAATCTT+AGG | - | chr3_1:4407691-4407710 | None:intergenic | 10.0% |
!!! | TCTTTATCTTATTATTTTTA+AGG | + | chr3_1:4408672-4408691 | Msa0345270:intron | 10.0% |
!!! | AAAAATATTTTTTTGGTTTT+AGG | + | chr3_1:4408750-4408769 | Msa0345270:intron | 10.0% |
!! | CAAATATTCTATATATTATA+AGG | + | chr3_1:4408897-4408916 | Msa0345270:intron | 10.0% |
!!! | TTCTAAAAAATTTATATTTG+AGG | - | chr3_1:4410101-4410120 | None:intergenic | 10.0% |
!! | CAAATTATTGGAAAATAAAA+GGG | - | chr3_1:4403793-4403812 | None:intergenic | 15.0% |
!! | TCAAATTATTGGAAAATAAA+AGG | - | chr3_1:4403794-4403813 | None:intergenic | 15.0% |
!! | AGTTTATTTAGTCAAATTAT+TGG | - | chr3_1:4403805-4403824 | None:intergenic | 15.0% |
!! | TTAAGTAGAAAATATAAGTT+TGG | + | chr3_1:4404303-4404322 | Msa0345270:intron | 15.0% |
!!! | ATTTTTAGAACAAGTTAAAA+TGG | + | chr3_1:4404921-4404940 | Msa0345270:intron | 15.0% |
!!! | TTTATTTTGATTATCATGTT+TGG | - | chr3_1:4405101-4405120 | None:intergenic | 15.0% |
!!! | TTAATTTTATCTAACAATTG+AGG | + | chr3_1:4405162-4405181 | Msa0345270:intron | 15.0% |
!!! | TAGCATATTTATTTTTTCTT+TGG | - | chr3_1:4405778-4405797 | None:intergenic | 15.0% |
!! | ATAAAGAAAAAACATTCATA+CGG | + | chr3_1:4405905-4405924 | Msa0345270:intron | 15.0% |
!!! | CAATATTGTTTATACTATTT+TGG | + | chr3_1:4406044-4406063 | Msa0345270:intron | 15.0% |
!!! | ACTTGATTATTTTTCTATTA+TGG | - | chr3_1:4406136-4406155 | None:intergenic | 15.0% |
!!! | AAATAATCAAGTTGATTTTT+TGG | + | chr3_1:4406144-4406163 | Msa0345270:intron | 15.0% |
!!! | AATAATCAAGTTGATTTTTT+GGG | + | chr3_1:4406145-4406164 | Msa0345270:intron | 15.0% |
!!! | TTTGGTGTATAATTTAATAT+TGG | + | chr3_1:4406250-4406269 | Msa0345270:intron | 15.0% |
!! | TTGGTGTATAATTTAATATT+GGG | + | chr3_1:4406251-4406270 | Msa0345270:intron | 15.0% |
!!! | TTTTAGTAAACTAATTAGTA+GGG | - | chr3_1:4406499-4406518 | None:intergenic | 15.0% |
!!! | TTTTTAGTAAACTAATTAGT+AGG | - | chr3_1:4406500-4406519 | None:intergenic | 15.0% |
!!! | TATATAAAGTGTCAATAAAT+TGG | + | chr3_1:4407490-4407509 | Msa0345270:intron | 15.0% |
!! | GATTGAAATTTAATAATAGA+AGG | + | chr3_1:4407693-4407712 | Msa0345270:intron | 15.0% |
!!! | AATGTTTACAAAATATTTTC+TGG | - | chr3_1:4407927-4407946 | None:intergenic | 15.0% |
!!! | TTATTTTTAAGGCTTAAATA+TGG | + | chr3_1:4408683-4408702 | Msa0345270:intron | 15.0% |
!!! | ACCAAAAAAATATTTTTACA+GGG | - | chr3_1:4409007-4409026 | None:intergenic | 15.0% |
!!! | AACCAAAAAAATATTTTTAC+AGG | - | chr3_1:4409006-4409025 | None:intergenic | 15.0% |
!!! | AAATATAGAATAATTGGTTT+TGG | + | chr3_1:4408779-4408798 | Msa0345270:intron | 15.0% |
!! | AAATCATTTCATATTGAAAT+TGG | + | chr3_1:4408830-4408849 | Msa0345270:intron | 15.0% |
!!! | AAATATACAAAATTTGGTTT+TGG | - | chr3_1:4408975-4408994 | None:intergenic | 15.0% |
!!! | AACCAAAAAAATATTTTTAC+AGG | + | chr3_1:4409006-4409025 | Msa0345270:intron | 15.0% |
!!! | ACCAAAAAAATATTTTTACA+GGG | + | chr3_1:4409007-4409026 | Msa0345270:intron | 15.0% |
!! | AATGAGATGTTAAATTAATA+AGG | - | chr3_1:4409163-4409182 | None:intergenic | 15.0% |
!! | TAAATAACAAAGGATAATAT+TGG | + | chr3_1:4409205-4409224 | Msa0345270:intron | 15.0% |
!!! | TAAGACTTTTTAATAACTAA+TGG | - | chr3_1:4409638-4409657 | None:intergenic | 15.0% |
!! | GGGAATTTCATAAAATTTAT+TGG | + | chr3_1:4402780-4402799 | Msa0345270:CDS | 20.0% |
!! | AATTTATTGGAGAAATTTCT+TGG | + | chr3_1:4402793-4402812 | Msa0345270:CDS | 20.0% |
!! | AGTAGAAAACTTTACTTTAA+AGG | - | chr3_1:4403044-4403063 | None:intergenic | 20.0% |
!!! | TTTGACTAAATAAACTTGTT+TGG | + | chr3_1:4403809-4403828 | Msa0345270:intron | 20.0% |
!!! | TTATATTTTGTATTGATGGA+AGG | + | chr3_1:4403871-4403890 | Msa0345270:intron | 20.0% |
!!! | TATATTTTGTATTGATGGAA+GGG | + | chr3_1:4403872-4403891 | Msa0345270:intron | 20.0% |
!! | AGAAGTTCATAAAATACAAA+TGG | + | chr3_1:4403998-4404017 | Msa0345270:intron | 20.0% |
!! | GATATAATATAATTTCTGCT+TGG | - | chr3_1:4404127-4404146 | None:intergenic | 20.0% |
!!! | ATATTTGTGATGTTTAAAGT+CGG | + | chr3_1:4404821-4404840 | Msa0345270:intron | 20.0% |
!! | AAATTAAGCTACAATCTTAT+TGG | - | chr3_1:4405149-4405168 | None:intergenic | 20.0% |
!! | TTTGTGATTTATCATTTACA+AGG | - | chr3_1:4405627-4405646 | None:intergenic | 20.0% |
!! | TTGAAATTCATTTGTATTTG+AGG | + | chr3_1:4405724-4405743 | Msa0345270:intron | 20.0% |
!! | TAATAAAAAGTAGAAAGAAG+TGG | - | chr3_1:4405879-4405898 | None:intergenic | 20.0% |
!!! | TGTTTGATTGCTTATTATTT+TGG | + | chr3_1:4406084-4406103 | Msa0345270:intron | 20.0% |
!! | GTACAAAATAATGAAATATG+TGG | + | chr3_1:4406167-4406186 | Msa0345270:intron | 20.0% |
!! | TGGTGTATAATTTAATATTG+GGG | + | chr3_1:4406252-4406271 | Msa0345270:intron | 20.0% |
!! | AAGAAAATTAAAGATCAAGA+AGG | - | chr3_1:4406291-4406310 | None:intergenic | 20.0% |
!!! | CTTGATCTTTAATTTTCTTT+AGG | + | chr3_1:4406292-4406311 | Msa0345270:intron | 20.0% |
!! | TTAAAAGAAATTTGGAAAAG+AGG | - | chr3_1:4406815-4406834 | None:intergenic | 20.0% |
!!! | TCTTTTCCAAATTTCTTTTA+AGG | + | chr3_1:4406814-4406833 | Msa0345270:intron | 20.0% |
!!! | ATCTTTTCTACAAATTATGA+AGG | + | chr3_1:4407116-4407135 | Msa0345270:intron | 20.0% |
!! | ATCTCAAAATTAAATCTTCA+TGG | - | chr3_1:4407206-4407225 | None:intergenic | 20.0% |
!!! | AGTTTGATTTCATATTTAGT+TGG | - | chr3_1:4407243-4407262 | None:intergenic | 20.0% |
!! | TTTATATAGCTATATAGCTA+AGG | - | chr3_1:4407478-4407497 | None:intergenic | 20.0% |
!! | GAGTACTAAAAAAATGATTA+GGG | + | chr3_1:4408157-4408176 | Msa0345270:intron | 20.0% |
!! | AGTACTAAAAAAATGATTAG+GGG | + | chr3_1:4408158-4408177 | Msa0345270:intron | 20.0% |
!!! | ATAGTTTATTATCCCATTTT+CGG | - | chr3_1:4408595-4408614 | None:intergenic | 20.0% |
!! | AACTATTCACATTAAAATGT+TGG | + | chr3_1:4408609-4408628 | Msa0345270:intron | 20.0% |
!! | ATTATATTCCCAAACAAAAA+TGG | - | chr3_1:4408638-4408657 | None:intergenic | 20.0% |
!!! | ATTTTTGTTTGGGAATATAA+TGG | + | chr3_1:4408637-4408656 | Msa0345270:intron | 20.0% |
!!! | TTTTTGTTTGGGAATATAAT+GGG | + | chr3_1:4408638-4408657 | Msa0345270:intron | 20.0% |
!!! | TCCCTGTAAAAATATTTTTT+TGG | + | chr3_1:4408743-4408762 | Msa0345270:intron | 20.0% |
!!! | CAATATGAAATGATTTTACA+AGG | - | chr3_1:4408826-4408845 | None:intergenic | 20.0% |
!! | GGACTAAAATGAATATTATA+GGG | - | chr3_1:4408857-4408876 | None:intergenic | 20.0% |
!! | AGGACTAAAATGAATATTAT+AGG | - | chr3_1:4408858-4408877 | None:intergenic | 20.0% |
!!! | AAATTGATTCATATTGGATT+TGG | - | chr3_1:4408924-4408943 | None:intergenic | 20.0% |
!!! | CTTGTAAAATTGATTCATAT+TGG | - | chr3_1:4408930-4408949 | None:intergenic | 20.0% |
!!! | CAATATGAATCAATTTTACA+AGG | + | chr3_1:4408928-4408947 | Msa0345270:intron | 20.0% |
!!! | TCCCTGTAAAAATATTTTTT+TGG | - | chr3_1:4408743-4408762 | None:intergenic | 20.0% |
!! | TCAAAAAGTGACAATTAAAA+AGG | - | chr3_1:4409066-4409085 | None:intergenic | 20.0% |
!!! | TTATCCTTTGTTATTTATTG+CGG | - | chr3_1:4409202-4409221 | None:intergenic | 20.0% |
!! | TGTATACTGTCATTAAAAAT+AGG | - | chr3_1:4409358-4409377 | None:intergenic | 20.0% |
!! | ATTATCTTCTATGTTATTCA+TGG | - | chr3_1:4409477-4409496 | None:intergenic | 20.0% |
!! | AATTTACTGGAAAAAATTCT+TGG | + | chr3_1:4409601-4409620 | Msa0345270:CDS | 20.0% |
!! | TTTAATAACTAATGGTTCTT+GGG | - | chr3_1:4409630-4409649 | None:intergenic | 20.0% |
!!! | TTTTAATAACTAATGGTTCT+TGG | - | chr3_1:4409631-4409650 | None:intergenic | 20.0% |
!!! | ATATGTAGAATTGACTTTAA+AGG | - | chr3_1:4409852-4409871 | None:intergenic | 20.0% |
!!! | AGATGATTTTTTAGTTCCTT+GGG | + | chr3_1:4402682-4402701 | Msa0345270:CDS | 25.0% |
! | GGAAAAAGATTTCTCATAAT+GGG | - | chr3_1:4402852-4402871 | None:intergenic | 25.0% |
! | AGGAAAAAGATTTCTCATAA+TGG | - | chr3_1:4402853-4402872 | None:intergenic | 25.0% |
! | TCTATTTACAAGAAGAAAGA+TGG | + | chr3_1:4403003-4403022 | Msa0345270:CDS | 25.0% |
!! | AATCAAGAATTTTGTCAAGT+TGG | + | chr3_1:4403435-4403454 | Msa0345270:intron | 25.0% |
! | TTTGATAGATGAAAGATTGA+TGG | - | chr3_1:4403560-4403579 | None:intergenic | 25.0% |
! | ATCAAATGCATAGTATGTTT+AGG | + | chr3_1:4403574-4403593 | Msa0345270:CDS | 25.0% |
! | TCAAATGCATAGTATGTTTA+GGG | + | chr3_1:4403575-4403594 | Msa0345270:CDS | 25.0% |
!! | TTTTAAACATCTACACTATG+AGG | + | chr3_1:4403681-4403700 | Msa0345270:CDS | 25.0% |
! | TGTAACTTACTATTTGTGTT+TGG | + | chr3_1:4403749-4403768 | Msa0345270:intron | 25.0% |
! | ATCATGAAAAGTTTACTCTA+TGG | - | chr3_1:4404064-4404083 | None:intergenic | 25.0% |
! | GCAGAAATTATATTATATCG+AGG | + | chr3_1:4404128-4404147 | Msa0345270:intron | 25.0% |
!!! | TTTGACAAGGATATTTTTTG+TGG | + | chr3_1:4404158-4404177 | Msa0345270:intron | 25.0% |
! | TTGAATATTGTCAAACTGTT+TGG | - | chr3_1:4404275-4404294 | None:intergenic | 25.0% |
! | TCGTTAACGAAATATTAGTT+TGG | - | chr3_1:4404330-4404349 | None:intergenic | 25.0% |
!!! | TTGGAAGATTTTAAGAATGT+AGG | - | chr3_1:4404380-4404399 | None:intergenic | 25.0% |
! | GAGACAATAATAAATTAGGT+AGG | - | chr3_1:4404697-4404716 | None:intergenic | 25.0% |
! | TTGGCTTAAGAAATTGTAAA+TGG | + | chr3_1:4404731-4404750 | Msa0345270:intron | 25.0% |
! | ATAGTAAAAGTTTATTGGTG+TGG | - | chr3_1:4404903-4404922 | None:intergenic | 25.0% |
!!! | ATTTTGATTATCATGTTTGG+TGG | - | chr3_1:4405098-4405117 | None:intergenic | 25.0% |
! | TGTAAGTAGAGTAAAAGTTT+AGG | - | chr3_1:4405275-4405294 | None:intergenic | 25.0% |
!! | TGATTAATTTTCATCGTATG+TGG | + | chr3_1:4405305-4405324 | Msa0345270:intron | 25.0% |
! | AGAGAAATATTAGAATGTTC+TGG | - | chr3_1:4405581-4405600 | None:intergenic | 25.0% |
! | CCTGTAAAATAAATAAACAG+TGG | - | chr3_1:4406005-4406024 | None:intergenic | 25.0% |
!!! | CCACTGTTTATTTATTTTAC+AGG | + | chr3_1:4406002-4406021 | Msa0345270:intron | 25.0% |
! | TATAATTTAATATTGGGGAG+TGG | + | chr3_1:4406257-4406276 | Msa0345270:intron | 25.0% |
! | TGTATGTTTCCAATTGTTAT+TGG | - | chr3_1:4406353-4406372 | None:intergenic | 25.0% |
! | ACAAAAATGTCGAAATTGAT+AGG | - | chr3_1:4406424-4406443 | None:intergenic | 25.0% |
!! | ACATTTTTGTTAGTTATGCT+AGG | + | chr3_1:4406434-4406453 | Msa0345270:intron | 25.0% |
! | TATAGGCCTTAAAAGAAATT+TGG | - | chr3_1:4406823-4406842 | None:intergenic | 25.0% |
!! | AAGTTTAATTAACTTGAGTC+GGG | - | chr3_1:4406873-4406892 | None:intergenic | 25.0% |
!! | GAAGTTTAATTAACTTGAGT+CGG | - | chr3_1:4406874-4406893 | None:intergenic | 25.0% |
! | ATGAAAGAAGATTACAATGA+AGG | - | chr3_1:4406954-4406973 | None:intergenic | 25.0% |
! | TCAGCATTAAAATGTAAGTT+TGG | + | chr3_1:4407069-4407088 | Msa0345270:intron | 25.0% |
! | TAAGTTTGGATATGAGAAAA+GGG | + | chr3_1:4407083-4407102 | Msa0345270:intron | 25.0% |
! | ACAAATTATGAAGGATTACA+AGG | + | chr3_1:4407125-4407144 | Msa0345270:intron | 25.0% |
! | ATATGAAATCAAACTTCCAT+TGG | + | chr3_1:4407248-4407267 | Msa0345270:CDS | 25.0% |
!!! | ACAAGTTGATGTTATATCTT+TGG | + | chr3_1:4407790-4407809 | Msa0345270:intron | 25.0% |
!! | ATCTTTGGAGAATTAAAAGT+AGG | + | chr3_1:4407805-4407824 | Msa0345270:intron | 25.0% |
!! | TCTTTGGAGAATTAAAAGTA+GGG | + | chr3_1:4407806-4407825 | Msa0345270:intron | 25.0% |
!! | TTCATGCATTTTATGTCTAT+AGG | + | chr3_1:4407837-4407856 | Msa0345270:intron | 25.0% |
! | AGATAAAATAGAGAATCCTA+TGG | - | chr3_1:4408005-4408024 | None:intergenic | 25.0% |
!! | TAGTTGATGTAACAAAGATA+TGG | + | chr3_1:4408120-4408139 | Msa0345270:intron | 25.0% |
!! | GGAGTACTAAAAAAATGATT+AGG | + | chr3_1:4408156-4408175 | Msa0345270:intron | 25.0% |
!! | GCATTTTATTGTTCTAACTA+AGG | + | chr3_1:4408186-4408205 | Msa0345270:intron | 25.0% |
! | ATTTAATTCCAAAGTTTCAG+AGG | - | chr3_1:4408241-4408260 | None:intergenic | 25.0% |
! | TACACTTTCAATAGCAATAT+AGG | - | chr3_1:4408380-4408399 | None:intergenic | 25.0% |
! | AATATTTCTTTCCACCTATT+CGG | + | chr3_1:4408440-4408459 | Msa0345270:intron | 25.0% |
! | ATGTTTCAATTGCTATACAT+TGG | + | chr3_1:4408562-4408581 | Msa0345270:intron | 25.0% |
!! | TAGTTTATTATCCCATTTTC+GGG | - | chr3_1:4408594-4408613 | None:intergenic | 25.0% |
! | CCAATTATTCTATATTTGCA+AGG | - | chr3_1:4408776-4408795 | None:intergenic | 25.0% |
! | CCTTGCAAATATAGAATAAT+TGG | + | chr3_1:4408773-4408792 | Msa0345270:intron | 25.0% |
! | AGGATTAAAACAAAATACGA+AGG | - | chr3_1:4408806-4408825 | None:intergenic | 25.0% |
!! | ACCAAATTTTGTATATTTGC+AGG | + | chr3_1:4408977-4408996 | Msa0345270:intron | 25.0% |
!! | CCAAATTTTGTATATTTGCA+GGG | + | chr3_1:4408978-4408997 | Msa0345270:intron | 25.0% |
! | AAGTGACAATTAAAAAGGAA+CGG | - | chr3_1:4409061-4409080 | None:intergenic | 25.0% |
!! | GAAACAATTATTGATTGTCT+TGG | - | chr3_1:4409102-4409121 | None:intergenic | 25.0% |
! | TTTGAAAGTGACAGTTAAAT+AGG | + | chr3_1:4409256-4409275 | Msa0345270:intron | 25.0% |
! | AGGAAAAGAATTTCTTATCA+TGG | - | chr3_1:4409661-4409680 | None:intergenic | 25.0% |
! | GTAAACATTCAATATTTCCT+CGG | - | chr3_1:4410209-4410228 | None:intergenic | 25.0% |
! | GGAAATATTGAATGTTTACA+AGG | + | chr3_1:4410210-4410229 | Msa0345270:CDS | 25.0% |
!! | CTATCATGCTTAATGTATTT+TGG | - | chr3_1:4410424-4410443 | None:intergenic | 25.0% |
!!! | CAGATGATTTTTTAGTTCCT+TGG | + | chr3_1:4402681-4402700 | Msa0345270:CDS | 30.0% |
! | GAAGACTTTTGAACAAGTAA+TGG | - | chr3_1:4402830-4402849 | None:intergenic | 30.0% |
! | CCTTTGAGTGATAAACTTTT+CGG | - | chr3_1:4402892-4402911 | None:intergenic | 30.0% |
! | ATAAGGATGATTAGTTGTGA+TGG | + | chr3_1:4403349-4403368 | Msa0345270:CDS | 30.0% |
!!! | TTTTGTCAAGTTGGAAACTT+TGG | + | chr3_1:4403444-4403463 | Msa0345270:intron | 30.0% |
!! | TTTGTCAAGTTGGAAACTTT+GGG | + | chr3_1:4403445-4403464 | Msa0345270:intron | 30.0% |
CAAATGCATAGTATGTTTAG+GGG | + | chr3_1:4403576-4403595 | Msa0345270:CDS | 30.0% | |
ACAAACTGCCAAAATACATT+AGG | + | chr3_1:4403605-4403624 | Msa0345270:CDS | 30.0% | |
GAAAATAAAAGGGAAACATG+GGG | - | chr3_1:4403783-4403802 | None:intergenic | 30.0% | |
GGAAAATAAAAGGGAAACAT+GGG | - | chr3_1:4403784-4403803 | None:intergenic | 30.0% | |
TGGAAAATAAAAGGGAAACA+TGG | - | chr3_1:4403785-4403804 | None:intergenic | 30.0% | |
TGGTTTATAGAAAACATGGA+GGG | - | chr3_1:4403909-4403928 | None:intergenic | 30.0% | |
CTATAAACCACGCAAATATT+AGG | + | chr3_1:4403919-4403938 | Msa0345270:intron | 30.0% | |
CAAATATTAGGATGTCATTG+TGG | + | chr3_1:4403931-4403950 | Msa0345270:intron | 30.0% | |
! | CATAATACATGCAAAAGTAC+GGG | - | chr3_1:4404201-4404220 | None:intergenic | 30.0% |
GCATAATACATGCAAAAGTA+CGG | - | chr3_1:4404202-4404221 | None:intergenic | 30.0% | |
GAGGGGTAAAATTGTAATAT+TGG | - | chr3_1:4404399-4404418 | None:intergenic | 30.0% | |
! | AATTTTGTAATCTCGAAGAG+GGG | - | chr3_1:4404416-4404435 | None:intergenic | 30.0% |
! | GAATTTTGTAATCTCGAAGA+GGG | - | chr3_1:4404417-4404436 | None:intergenic | 30.0% |
CTCTTCGAGATTACAAAATT+CGG | + | chr3_1:4404416-4404435 | Msa0345270:intron | 30.0% | |
GAGTTATAGAGTATGAAAAC+AGG | - | chr3_1:4404584-4404603 | None:intergenic | 30.0% | |
AGATCAAGTTCATAAACCAA+TGG | + | chr3_1:4404611-4404630 | Msa0345270:intron | 30.0% | |
! | CGATTGCATTTTTATTCCAT+TGG | - | chr3_1:4404630-4404649 | None:intergenic | 30.0% |
TTTGTGAGTTTCAACTTTGA+AGG | + | chr3_1:4404850-4404869 | Msa0345270:intron | 30.0% | |
! | TTAACTTTTGATGTTCTTCC+CGG | - | chr3_1:4404985-4405004 | None:intergenic | 30.0% |
TTGTGTTTAGACAATATGGA+AGG | - | chr3_1:4405226-4405245 | None:intergenic | 30.0% | |
TGTCTTGTGTTTAGACAATA+TGG | - | chr3_1:4405230-4405249 | None:intergenic | 30.0% | |
AGCTTAGTTAGTATGATTAG+TGG | + | chr3_1:4405375-4405394 | Msa0345270:intron | 30.0% | |
TATCATCACTTCATGCAAAA+AGG | + | chr3_1:4405817-4405836 | Msa0345270:intron | 30.0% | |
GGAATAGGAAGATTGATAAA+AGG | - | chr3_1:4405858-4405877 | None:intergenic | 30.0% | |
AAAGTAGAAAGAAGTGGAAT+AGG | - | chr3_1:4405873-4405892 | None:intergenic | 30.0% | |
CAAAGCAAAAGATATATGCT+TGG | + | chr3_1:4405951-4405970 | Msa0345270:intron | 30.0% | |
AATATGTGGTTTCATACATG+TGG | + | chr3_1:4406181-4406200 | Msa0345270:intron | 30.0% | |
! | TTCCAATTGTTATTGGCATT+TGG | - | chr3_1:4406346-4406365 | None:intergenic | 30.0% |
TCAGACACACTAATTAAGTA+GGG | - | chr3_1:4406401-4406420 | None:intergenic | 30.0% | |
TGAGTAAAATTTGTACCATG+TGG | - | chr3_1:4406469-4406488 | None:intergenic | 30.0% | |
AACAGTCATAGCATCATTTA+CGG | - | chr3_1:4406532-4406551 | None:intergenic | 30.0% | |
! | TTTAAGGCCTATAGATTTGT+TGG | + | chr3_1:4406830-4406849 | Msa0345270:intron | 30.0% |
! | TTAAGGCCTATAGATTTGTT+GGG | + | chr3_1:4406831-4406850 | Msa0345270:intron | 30.0% |
GTAAGTTTGGATATGAGAAA+AGG | + | chr3_1:4407082-4407101 | Msa0345270:intron | 30.0% | |
TTCATATTTAGTTGGCAAGA+AGG | - | chr3_1:4407235-4407254 | None:intergenic | 30.0% | |
ATGTCAAGTAGAATAATGGT+AGG | - | chr3_1:4407384-4407403 | None:intergenic | 30.0% | |
ACACATGTCAAGTAGAATAA+TGG | - | chr3_1:4407388-4407407 | None:intergenic | 30.0% | |
TGATAGATTACAGCAAAAAG+CGG | - | chr3_1:4407452-4407471 | None:intergenic | 30.0% | |
TTCTCTCAATACAATAACGA+TGG | - | chr3_1:4407517-4407536 | None:intergenic | 30.0% | |
AGAAGTGAGTGTAAGATTAA+GGG | + | chr3_1:4407533-4407552 | Msa0345270:intron | 30.0% | |
CTCATAGTTTAACGATAAGT+TGG | + | chr3_1:4407592-4407611 | Msa0345270:intron | 30.0% | |
!! | TAGTTTAACGATAAGTTGGT+AGG | + | chr3_1:4407596-4407615 | Msa0345270:intron | 30.0% |
!! | AGTTTAACGATAAGTTGGTA+GGG | + | chr3_1:4407597-4407616 | Msa0345270:intron | 30.0% |
TTAGGGGAAATCTTGTAAAT+TGG | + | chr3_1:4407631-4407650 | Msa0345270:intron | 30.0% | |
! | AATAATAGAAGGTACACGAT+TGG | + | chr3_1:4407704-4407723 | Msa0345270:intron | 30.0% |
! | CTTTGGAGAATTAAAAGTAG+GGG | + | chr3_1:4407807-4407826 | Msa0345270:intron | 30.0% |
ATATGACATTGTTCAACCAT+AGG | + | chr3_1:4407986-4408005 | Msa0345270:intron | 30.0% | |
ATCAACTAAAAAACACACAG+TGG | - | chr3_1:4408108-4408127 | None:intergenic | 30.0% | |
TGATGTAACAAAGATATGGA+AGG | + | chr3_1:4408124-4408143 | Msa0345270:intron | 30.0% | |
! | AGATATGGAAGGTATATCTT+TGG | + | chr3_1:4408135-4408154 | Msa0345270:intron | 30.0% |
!!! | TCATTTTAGTCCTTGTTTTG+AGG | + | chr3_1:4408865-4408884 | Msa0345270:intron | 30.0% |
!!! | CATTTTAGTCCTTGTTTTGA+GGG | + | chr3_1:4408866-4408885 | Msa0345270:intron | 30.0% |
AGGACTAAAACAAAATACCA+AGG | + | chr3_1:4408948-4408967 | Msa0345270:intron | 30.0% | |
CCCTGCAAATATACAAAATT+TGG | - | chr3_1:4408981-4409000 | None:intergenic | 30.0% | |
TCCAAAAGAGACACTTAAAA+AGG | + | chr3_1:4409292-4409311 | Msa0345270:intron | 30.0% | |
!!! | TCCTTTTTAAGTGTCTCTTT+TGG | - | chr3_1:4409296-4409315 | None:intergenic | 30.0% |
AAGAGACACTTAAAAAGGAA+CGG | + | chr3_1:4409297-4409316 | Msa0345270:intron | 30.0% | |
! | AAGATAATTGTCCATTTTCC+TGG | + | chr3_1:4409489-4409508 | Msa0345270:CDS | 30.0% |
! | AGATAATTGTCCATTTTCCT+GGG | + | chr3_1:4409490-4409509 | Msa0345270:CDS | 30.0% |
GGGAGTTTCATAAAATTTAC+TGG | + | chr3_1:4409588-4409607 | Msa0345270:CDS | 30.0% | |
! | TCTTCGAGTGATAAACTTTT+CGG | - | chr3_1:4409700-4409719 | None:intergenic | 30.0% |
TCCATTTACAAGAAGAAAGA+AGG | + | chr3_1:4409811-4409830 | Msa0345270:CDS | 30.0% | |
ACCTTCTTTCTTCTTGTAAA+TGG | - | chr3_1:4409815-4409834 | None:intergenic | 30.0% | |
TTGGGTTACATATTTAACAG+TGG | + | chr3_1:4409982-4410001 | Msa0345270:CDS | 30.0% | |
TGGGTTACATATTTAACAGT+GGG | + | chr3_1:4409983-4410002 | Msa0345270:CDS | 30.0% | |
!!! | CATTGCCTTATTTTATGCTT+CGG | + | chr3_1:4410279-4410298 | Msa0345270:CDS | 30.0% |
!!! | ATTGCCTTATTTTATGCTTC+GGG | + | chr3_1:4410280-4410299 | Msa0345270:CDS | 30.0% |
TAAACACACTTTACATGTTG+TGG | - | chr3_1:4410383-4410402 | None:intergenic | 30.0% | |
ACAACATGTAAAGTGTGTTT+AGG | + | chr3_1:4410382-4410401 | Msa0345270:CDS | 30.0% | |
CAACATGTAAAGTGTGTTTA+GGG | + | chr3_1:4410383-4410402 | Msa0345270:CDS | 30.0% | |
AACATGTAAAGTGTGTTTAG+GGG | + | chr3_1:4410384-4410403 | Msa0345270:CDS | 30.0% | |
TACATTAAGCATGATAGAAC+TGG | + | chr3_1:4410427-4410446 | Msa0345270:CDS | 30.0% | |
! | ATCTGCTACCTTCTTCTTTT+TGG | - | chr3_1:4402666-4402685 | None:intergenic | 35.0% |
ATGATATCAAGCAAATCCCA+AGG | - | chr3_1:4402701-4402720 | None:intergenic | 35.0% | |
CCGAAAAGTTTATCACTCAA+AGG | + | chr3_1:4402889-4402908 | Msa0345270:intron | 35.0% | |
! | CAAAGGTGATCAATCACTTT+TGG | + | chr3_1:4402906-4402925 | Msa0345270:intron | 35.0% |
! | TACCATGTCTTACTTGCTTT+TGG | + | chr3_1:4403070-4403089 | Msa0345270:CDS | 35.0% |
!! | GTGGCTTTATGTAAAAGTTC+TGG | + | chr3_1:4403118-4403137 | Msa0345270:CDS | 35.0% |
! | GTCTACCAATCTCGAAATTT+TGG | + | chr3_1:4403151-4403170 | Msa0345270:intron | 35.0% |
!! | ACCAATCTCGAAATTTTGGT+TGG | + | chr3_1:4403155-4403174 | Msa0345270:intron | 35.0% |
!!! | CCAATCTCGAAATTTTGGTT+GGG | + | chr3_1:4403156-4403175 | Msa0345270:intron | 35.0% |
TGGATTTCCCTTTGTTGAAT+AGG | - | chr3_1:4403185-4403204 | None:intergenic | 35.0% | |
ATTCAACAAAGGGAAATCCA+TGG | + | chr3_1:4403185-4403204 | Msa0345270:intron | 35.0% | |
CATGAGGAAGAACTAACATT+GGG | - | chr3_1:4403328-4403347 | None:intergenic | 35.0% | |
! | TTAGTTCTTCCTCATGCATA+AGG | + | chr3_1:4403332-4403351 | Msa0345270:CDS | 35.0% |
ACTAATCATCCTTATGCATG+AGG | - | chr3_1:4403344-4403363 | None:intergenic | 35.0% | |
! | ATGCATTGATAAACCCTGAA+AGG | + | chr3_1:4403506-4403525 | Msa0345270:intron | 35.0% |
ATTGATAAACCCTGAAAGGT+GGG | + | chr3_1:4403510-4403529 | Msa0345270:intron | 35.0% | |
! | CGATCTTGCCTAATGTATTT+TGG | - | chr3_1:4403616-4403635 | None:intergenic | 35.0% |
TAGAAGAAGACCATACTTGT+TGG | + | chr3_1:4403651-4403670 | Msa0345270:CDS | 35.0% | |
AAACACCAATCCAACAAGTA+TGG | - | chr3_1:4403664-4403683 | None:intergenic | 35.0% | |
TAAACATCTACACTATGAGG+TGG | + | chr3_1:4403684-4403703 | Msa0345270:CDS | 35.0% | |
GTGGTTTATAGAAAACATGG+AGG | - | chr3_1:4403910-4403929 | None:intergenic | 35.0% | |
TGCGTGGTTTATAGAAAACA+TGG | - | chr3_1:4403913-4403932 | None:intergenic | 35.0% | |
ATGACATCCTAATATTTGCG+TGG | - | chr3_1:4403929-4403948 | None:intergenic | 35.0% | |
TGTCACAGATAATTAAGACG+TGG | - | chr3_1:4403975-4403994 | None:intergenic | 35.0% | |
!!! | GACAAGGATATTTTTTGTGG+TGG | + | chr3_1:4404161-4404180 | Msa0345270:intron | 35.0% |
! | CTCACGAGTACATTTTGAAT+AGG | + | chr3_1:4404246-4404265 | Msa0345270:intron | 35.0% |
! | CGAATTTTGTAATCTCGAAG+AGG | - | chr3_1:4404418-4404437 | None:intergenic | 35.0% |
! | AATACCTAAGGATTTTGCTG+CGG | + | chr3_1:4404513-4404532 | Msa0345270:intron | 35.0% |
GAGTATGAAAACAGGAAAAG+TGG | - | chr3_1:4404576-4404595 | None:intergenic | 35.0% | |
CGCGGAGACAATAATAAATT+AGG | - | chr3_1:4404701-4404720 | None:intergenic | 35.0% | |
AGACTCTACAAAGATTTCGA+AGG | + | chr3_1:4405011-4405030 | Msa0345270:intron | 35.0% | |
AATTCCTTACACACACAGTA+GGG | + | chr3_1:4405065-4405084 | Msa0345270:intron | 35.0% | |
TTATCTAACAATTGAGGCAG+TGG | + | chr3_1:4405168-4405187 | Msa0345270:intron | 35.0% | |
GGAGAAACTAGAATCAAAAC+AGG | + | chr3_1:4405926-4405945 | Msa0345270:intron | 35.0% | |
GACCAAATGCCAATAACAAT+TGG | + | chr3_1:4406341-4406360 | Msa0345270:intron | 35.0% | |
GTCAGACACACTAATTAAGT+AGG | - | chr3_1:4406402-4406421 | None:intergenic | 35.0% | |
GTTAGTTATGCTAGGATTTG+TGG | + | chr3_1:4406442-4406461 | Msa0345270:intron | 35.0% | |
GTAAATGATGCTATGACTGT+TGG | + | chr3_1:4406531-4406550 | Msa0345270:intron | 35.0% | |
! | TATCTCTTTTAGTGCTCTCA+CGG | + | chr3_1:4406630-4406649 | Msa0345270:intron | 35.0% |
GATTACAATGAAGGAAGAGA+AGG | - | chr3_1:4406945-4406964 | None:intergenic | 35.0% | |
GAGAGATTCTTCATCTTGAA+AGG | - | chr3_1:4407024-4407043 | None:intergenic | 35.0% | |
! | ATTAAGAGTGTACGAGTTGT+TGG | + | chr3_1:4407176-4407195 | Msa0345270:CDS | 35.0% |
GAGAAGTGAGTGTAAGATTA+AGG | + | chr3_1:4407532-4407551 | Msa0345270:intron | 35.0% | |
! | CACTTTGCATTTGTTGAGTA+TGG | + | chr3_1:4407569-4407588 | Msa0345270:intron | 35.0% |
CAAACTTTGTGATCGAATCT+CGG | + | chr3_1:4407728-4407747 | Msa0345270:intron | 35.0% | |
AAACTTTGTGATCGAATCTC+GGG | + | chr3_1:4407729-4407748 | Msa0345270:intron | 35.0% | |
GAGAATTAAAAGTAGGGGTT+TGG | + | chr3_1:4407812-4407831 | Msa0345270:intron | 35.0% | |
!! | GAATGAGAAGTATTCTGAGT+TGG | - | chr3_1:4408033-4408052 | None:intergenic | 35.0% |
!! | GATAGTTTCCTCTGAAACTT+TGG | + | chr3_1:4408230-4408249 | Msa0345270:intron | 35.0% |
AATAGCATATGAGTATGAGC+TGG | - | chr3_1:4408348-4408367 | None:intergenic | 35.0% | |
AGAATGTTAATTTCCCTCTG+AGG | + | chr3_1:4408522-4408541 | Msa0345270:intron | 35.0% | |
! | TAGCAATTTTCATCCTCAGA+GGG | - | chr3_1:4408538-4408557 | None:intergenic | 35.0% |
! | ATAGCAATTTTCATCCTCAG+AGG | - | chr3_1:4408539-4408558 | None:intergenic | 35.0% |
!! | TGTTGGTCACCATTTTTGTT+TGG | + | chr3_1:4408626-4408645 | Msa0345270:intron | 35.0% |
!! | GTTGGTCACCATTTTTGTTT+GGG | + | chr3_1:4408627-4408646 | Msa0345270:intron | 35.0% |
AAATGATCCCTGCAAATATC+TGG | + | chr3_1:4408706-4408725 | Msa0345270:intron | 35.0% | |
CAAAACACCAGATATTTGCA+GGG | - | chr3_1:4408716-4408735 | None:intergenic | 35.0% | |
!! | GATTTTAGTCCCTCAAAACA+AGG | - | chr3_1:4408878-4408897 | None:intergenic | 35.0% |
!!! | CAAAATTTGGTTTTGGTCCT+TGG | - | chr3_1:4408968-4408987 | None:intergenic | 35.0% |
! | GGAAGTAGTATCTGACATTT+TGG | - | chr3_1:4409040-4409059 | None:intergenic | 35.0% |
CTCTCCGCAATAAATAACAA+AGG | + | chr3_1:4409195-4409214 | Msa0345270:intron | 35.0% | |
ATCACAACAATGACAAGGTT+AGG | - | chr3_1:4409442-4409461 | None:intergenic | 35.0% | |
TGTGTATCACAACAATGACA+AGG | - | chr3_1:4409447-4409466 | None:intergenic | 35.0% | |
TTGTCATTGTTGTGATACAC+AGG | + | chr3_1:4409446-4409465 | Msa0345270:intron | 35.0% | |
TGTCATTGTTGTGATACACA+GGG | + | chr3_1:4409447-4409466 | Msa0345270:intron | 35.0% | |
TCAAGAATATCCCAGGAAAA+TGG | - | chr3_1:4409503-4409522 | None:intergenic | 35.0% | |
AATGACATCAAGAATATCCC+AGG | - | chr3_1:4409510-4409529 | None:intergenic | 35.0% | |
ACACGCAAGAAAATTGAAAG+AGG | - | chr3_1:4409556-4409575 | None:intergenic | 35.0% | |
! | TTCTGGTACTTAGCCTATTT+TGG | + | chr3_1:4409731-4409750 | Msa0345270:CDS | 35.0% |
AGCGGATATTTGATCATGAA+AGG | + | chr3_1:4409761-4409780 | Msa0345270:CDS | 35.0% | |
GCGGATATTTGATCATGAAA+GGG | + | chr3_1:4409762-4409781 | Msa0345270:CDS | 35.0% | |
CGGATATTTGATCATGAAAG+GGG | + | chr3_1:4409763-4409782 | Msa0345270:CDS | 35.0% | |
! | TACCATGTCTTACTTGCTTT+TGG | + | chr3_1:4403070-4403089 | Msa0345270:CDS | 35.0% |
TGTCTATCAGTCTCGAAATT+TGG | + | chr3_1:4409958-4409977 | Msa0345270:CDS | 35.0% | |
GTCTATCAGTCTCGAAATTT+GGG | + | chr3_1:4409959-4409978 | Msa0345270:CDS | 35.0% | |
ATTTAACAGTGGGAAATCCA+TGG | + | chr3_1:4409993-4410012 | Msa0345270:CDS | 35.0% | |
TATATATGTTGTCACCAACG+AGG | + | chr3_1:4410048-4410067 | Msa0345270:CDS | 35.0% | |
AACCATGAATTATGTCAAGC+TGG | + | chr3_1:4410243-4410262 | Msa0345270:CDS | 35.0% | |
TTCCAGCTTGACATAATTCA+TGG | - | chr3_1:4410248-4410267 | None:intergenic | 35.0% | |
TTATGTCAAGCTGGAAACTT+TGG | + | chr3_1:4410252-4410271 | Msa0345270:CDS | 35.0% | |
TATGTCAAGCTGGAAACTTT+GGG | + | chr3_1:4410253-4410272 | Msa0345270:CDS | 35.0% | |
!!! | TTGCCTTATTTTATGCTTCG+GGG | + | chr3_1:4410281-4410300 | Msa0345270:CDS | 35.0% |
TGTTGTGGATGAAAGATTGA+TGG | - | chr3_1:4410368-4410387 | None:intergenic | 35.0% | |
CTTTAGACATCAACGATATG+AGG | + | chr3_1:4410489-4410508 | Msa0345270:CDS | 35.0% | |
ACACACCAGCAAATTCAAAG+AGG | - | chr3_1:4402748-4402767 | None:intergenic | 40.0% | |
! | GAGTGATAAACTTTTCGGTC+AGG | - | chr3_1:4402887-4402906 | None:intergenic | 40.0% |
! | TTTTGGCACTTAGCCTATTG+TGG | + | chr3_1:4402923-4402942 | Msa0345270:CDS | 40.0% |
TTTGGCACTTAGCCTATTGT+GGG | + | chr3_1:4402924-4402943 | Msa0345270:CDS | 40.0% | |
TGCCAAAAGCAAGTAAGACA+TGG | - | chr3_1:4403075-4403094 | None:intergenic | 40.0% | |
!! | GTCTTACTTGCTTTTGGCAA+AGG | + | chr3_1:4403076-4403095 | Msa0345270:CDS | 40.0% |
CCCAACCAAAATTTCGAGAT+TGG | - | chr3_1:4403159-4403178 | None:intergenic | 40.0% | |
TTGGGCTACCTATTCAACAA+AGG | + | chr3_1:4403174-4403193 | Msa0345270:intron | 40.0% | |
TGGGCTACCTATTCAACAAA+GGG | + | chr3_1:4403175-4403194 | Msa0345270:intron | 40.0% | |
AACAAAGGGAAATCCATGGA+AGG | + | chr3_1:4403189-4403208 | Msa0345270:intron | 40.0% | |
ACAAAGTCAACAACCTTCCA+TGG | - | chr3_1:4403205-4403224 | None:intergenic | 40.0% | |
TACACCTATGTTGACCTTGT+CGG | - | chr3_1:4403257-4403276 | None:intergenic | 40.0% | |
GCATGAGGAAGAACTAACAT+TGG | - | chr3_1:4403329-4403348 | None:intergenic | 40.0% | |
TTGGAAACTTTGGGTGACAT+TGG | + | chr3_1:4403454-4403473 | Msa0345270:intron | 40.0% | |
CATTGATAAACCCTGAAAGG+TGG | + | chr3_1:4403509-4403528 | Msa0345270:intron | 40.0% | |
TTGATAAACCCTGAAAGGTG+GGG | + | chr3_1:4403511-4403530 | Msa0345270:intron | 40.0% | |
TTTCAAAACCCCACCTTTCA+GGG | - | chr3_1:4403522-4403541 | None:intergenic | 40.0% | |
TACATTAGGCAAGATCGACA+TGG | + | chr3_1:4403619-4403638 | Msa0345270:CDS | 40.0% | |
! | GAAGACCATACTTGTTGGAT+TGG | + | chr3_1:4403656-4403675 | Msa0345270:CDS | 40.0% |
!!! | GGATATTTTTTGTGGTGGTC+CGG | + | chr3_1:4404166-4404185 | Msa0345270:intron | 40.0% |
!!! | GATATTTTTTGTGGTGGTCC+GGG | + | chr3_1:4404167-4404186 | Msa0345270:intron | 40.0% |
!!! | ATATTTTTTGTGGTGGTCCG+GGG | + | chr3_1:4404168-4404187 | Msa0345270:intron | 40.0% |
AGAATTCTGCGCATTTCATG+CGG | + | chr3_1:4404463-4404482 | Msa0345270:intron | 40.0% | |
AATATGCGCAGGAATACCTA+AGG | + | chr3_1:4404501-4404520 | Msa0345270:intron | 40.0% | |
TTATCCGCAGCAAAATCCTT+AGG | - | chr3_1:4404520-4404539 | None:intergenic | 40.0% | |
GGAAAAGTGGTAGTTACCTT+AGG | - | chr3_1:4404563-4404582 | None:intergenic | 40.0% | |
CACATCTTGTCAAGGACATT+TGG | - | chr3_1:4404962-4404981 | None:intergenic | 40.0% | |
GAATTCCTTACACACACAGT+AGG | + | chr3_1:4405064-4405083 | Msa0345270:intron | 40.0% | |
ATTCCTTACACACACAGTAG+GGG | + | chr3_1:4405066-4405085 | Msa0345270:intron | 40.0% | |
TACGATTACTCTTTCTTGCC+GGG | - | chr3_1:4405675-4405694 | None:intergenic | 40.0% | |
CTACGATTACTCTTTCTTGC+CGG | - | chr3_1:4405676-4405695 | None:intergenic | 40.0% | |
ACAGTGGCTTCTTCTTCATT+TGG | - | chr3_1:4405989-4406008 | None:intergenic | 40.0% | |
TGCTAGCATGATGACTTCTT+TGG | + | chr3_1:4406232-4406251 | Msa0345270:intron | 40.0% | |
TTTAATATTGGGGAGTGGTG+AGG | + | chr3_1:4406262-4406281 | Msa0345270:intron | 40.0% | |
TCGTGAGTTCAACTCTTGTT+GGG | + | chr3_1:4406577-4406596 | Msa0345270:intron | 40.0% | |
TTGTTGGGTCATGACATCTT+TGG | + | chr3_1:4406592-4406611 | Msa0345270:intron | 40.0% | |
TACAATGAAGGAAGAGAAGG+AGG | - | chr3_1:4406942-4406961 | None:intergenic | 40.0% | |
TAACCCTAATGCATCGTCAA+GGG | - | chr3_1:4407046-4407065 | None:intergenic | 40.0% | |
TTAACCCTAATGCATCGTCA+AGG | - | chr3_1:4407047-4407066 | None:intergenic | 40.0% | |
AGGCTGAAAGAATTGATGCT+AGG | + | chr3_1:4407145-4407164 | Msa0345270:CDS | 40.0% | |
GGCTGAAAGAATTGATGCTA+GGG | + | chr3_1:4407146-4407165 | Msa0345270:CDS | 40.0% | |
GACGATGATGAAGAACAAGA+TGG | + | chr3_1:4407279-4407298 | Msa0345270:CDS | 40.0% | |
AGATTTCCCCTAAACCTTGA+GGG | - | chr3_1:4407624-4407643 | None:intergenic | 40.0% | |
AAGATTTCCCCTAAACCTTG+AGG | - | chr3_1:4407625-4407644 | None:intergenic | 40.0% | |
CGAGATTCGATCACAAAGTT+TGG | - | chr3_1:4407730-4407749 | None:intergenic | 40.0% | |
AGTGTATGAACATTCGCGTT+AGG | + | chr3_1:4408394-4408413 | Msa0345270:intron | 40.0% | |
TTTCTTTCCACCTATTCGGA+AGG | + | chr3_1:4408444-4408463 | Msa0345270:intron | 40.0% | |
ATTGGCATGATCCCGAAAAT+GGG | + | chr3_1:4408580-4408599 | Msa0345270:intron | 40.0% | |
CCAAAACACCAGATATTTGC+AGG | - | chr3_1:4408717-4408736 | None:intergenic | 40.0% | |
! | CCTGCAAATATCTGGTGTTT+TGG | + | chr3_1:4408714-4408733 | Msa0345270:intron | 40.0% |
AGACACTTAAAAAGGAACGG+AGG | + | chr3_1:4409300-4409319 | Msa0345270:intron | 40.0% | |
GACACTTAAAAAGGAACGGA+GGG | + | chr3_1:4409301-4409320 | Msa0345270:intron | 40.0% | |
GTCATTGTTGTGATACACAG+GGG | + | chr3_1:4409448-4409467 | Msa0345270:intron | 40.0% | |
GTCATCGAAATCTAGATCTC+TGG | - | chr3_1:4409534-4409553 | None:intergenic | 40.0% | |
TTTCTTGCGTGTGCAAGAAT+TGG | + | chr3_1:4409564-4409583 | Msa0345270:CDS | 40.0% | |
CGAAGACGATCAATCAATTC+TGG | + | chr3_1:4409714-4409733 | Msa0345270:CDS | 40.0% | |
!! | GCCTATTTTGGATGTTCTAG+CGG | + | chr3_1:4409743-4409762 | Msa0345270:CDS | 40.0% |
TCCGCTAGAACATCCAAAAT+AGG | - | chr3_1:4409747-4409766 | None:intergenic | 40.0% | |
TGCCAAAAGCAAGTAAGACA+TGG | - | chr3_1:4403075-4403094 | None:intergenic | 40.0% | |
!! | GTCTTACTTGCTTTTGGCAA+AGG | + | chr3_1:4403076-4403095 | Msa0345270:CDS | 40.0% |
GTCGCTTCATGTAAAAGTTC+TGG | + | chr3_1:4409926-4409945 | Msa0345270:CDS | 40.0% | |
ATCAGTCTCGAAATTTGGGT+TGG | + | chr3_1:4409963-4409982 | Msa0345270:CDS | 40.0% | |
! | TCAGTCTCGAAATTTGGGTT+GGG | + | chr3_1:4409964-4409983 | Msa0345270:CDS | 40.0% |
ACAAAGTCAACAACCTTCCA+TGG | - | chr3_1:4403205-4403224 | None:intergenic | 40.0% | |
TGTGACGTAGATGTTACATC+GGG | - | chr3_1:4410136-4410155 | None:intergenic | 40.0% | |
GTGTGACGTAGATGTTACAT+CGG | - | chr3_1:4410137-4410156 | None:intergenic | 40.0% | |
TAACATCTACGTCACACCTA+AGG | + | chr3_1:4410140-4410159 | Msa0345270:CDS | 40.0% | |
CATCACAGCAAACTAACCTT+AGG | - | chr3_1:4410159-4410178 | None:intergenic | 40.0% | |
!! | CTAAGGTTAGTTTGCTGTGA+TGG | + | chr3_1:4410157-4410176 | Msa0345270:CDS | 40.0% |
!!! | CTGTGATGGACAACTTTTAG+TGG | + | chr3_1:4410171-4410190 | Msa0345270:CDS | 40.0% |
!!! | TGCCTTATTTTATGCTTCGG+GGG | + | chr3_1:4410282-4410301 | Msa0345270:CDS | 40.0% |
TTCCCCCGAAGCATAAAATA+AGG | - | chr3_1:4410287-4410306 | None:intergenic | 40.0% | |
! | AAGTAGGCATTTTCCTTTGG+AGG | - | chr3_1:4410457-4410476 | None:intergenic | 40.0% |
! | AGCAAGTAGGCATTTTCCTT+TGG | - | chr3_1:4410460-4410479 | None:intergenic | 40.0% |
AAAGGAAAATGCCTACTTGC+TGG | + | chr3_1:4410459-4410478 | Msa0345270:CDS | 40.0% | |
! | AAAATGCCTACTTGCTGGAT+TGG | + | chr3_1:4410464-4410483 | Msa0345270:CDS | 40.0% |
TAGACATCAACGATATGAGG+TGG | + | chr3_1:4410492-4410511 | Msa0345270:CDS | 40.0% | |
GACGACCTCTTTGAATTTGC+TGG | + | chr3_1:4402740-4402759 | Msa0345270:CDS | 45.0% | |
TTGCTGGTGTGTGCAAGAAT+TGG | + | chr3_1:4402756-4402775 | Msa0345270:CDS | 45.0% | |
TGGTGTGTGCAAGAATTGGA+GGG | + | chr3_1:4402760-4402779 | Msa0345270:CDS | 45.0% | |
TCCACTAGAAGACCCACAAT+AGG | - | chr3_1:4402939-4402958 | None:intergenic | 45.0% | |
CTCAGAGGAGTTTGTCTTAG+TGG | + | chr3_1:4403099-4403118 | Msa0345270:CDS | 45.0% | |
TATTTACGTCGTCACCGACA+AGG | + | chr3_1:4403240-4403259 | Msa0345270:CDS | 45.0% | |
CTTTCAAAACCCCACCTTTC+AGG | - | chr3_1:4403523-4403542 | None:intergenic | 45.0% | |
AAAGGGAAACATGGGGAACA+AGG | - | chr3_1:4403776-4403795 | None:intergenic | 45.0% | |
TAAGACGTGGATTCCATCAG+TGG | - | chr3_1:4403962-4403981 | None:intergenic | 45.0% | |
TCGAGGCTTTCACTTTGACA+AGG | + | chr3_1:4404145-4404164 | Msa0345270:intron | 45.0% | |
! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr3_1:4404230-4404249 | None:intergenic | 45.0% |
TCTTGAGAACGAATATGCGC+AGG | + | chr3_1:4404490-4404509 | Msa0345270:intron | 45.0% | |
TGCTGCGGATAATGCTACTA+TGG | + | chr3_1:4404528-4404547 | Msa0345270:intron | 45.0% | |
ACTATGGCAGGCAAATCCTA+AGG | + | chr3_1:4404544-4404563 | Msa0345270:intron | 45.0% | |
ATGTCCTTGACAAGATGTGC+CGG | + | chr3_1:4404963-4404982 | Msa0345270:intron | 45.0% | |
AATCCCCTACTGTGTGTGTA+AGG | - | chr3_1:4405072-4405091 | None:intergenic | 45.0% | |
CCACACACTCACACTTATAG+AGG | - | chr3_1:4405520-4405539 | None:intergenic | 45.0% | |
CCTCTATAAGTGTGAGTGTG+TGG | + | chr3_1:4405517-4405536 | Msa0345270:intron | 45.0% | |
TCAAGATGCCCAAATATGCC+CGG | + | chr3_1:4405654-4405673 | Msa0345270:intron | 45.0% | |
CTTTCTTGCCGGGCATATTT+GGG | - | chr3_1:4405665-4405684 | None:intergenic | 45.0% | |
TCTTTCTTGCCGGGCATATT+TGG | - | chr3_1:4405666-4405685 | None:intergenic | 45.0% | |
ATGATGCTATGACTGTTGGC+TGG | + | chr3_1:4406535-4406554 | Msa0345270:intron | 45.0% | |
GAGTTGAACTCACGACATTG+TGG | - | chr3_1:4406572-4406591 | None:intergenic | 45.0% | |
GTCGTGAGTTCAACTCTTGT+TGG | + | chr3_1:4406576-4406595 | Msa0345270:intron | 45.0% | |
TTGGGTCATGACATCTTTGG+TGG | + | chr3_1:4406595-4406614 | Msa0345270:intron | 45.0% | |
! | AGTTTAGGTGAGTTGAGCTC+CGG | - | chr3_1:4406673-4406692 | None:intergenic | 45.0% |
TCTCCCTTGACGATGCATTA+GGG | + | chr3_1:4407040-4407059 | Msa0345270:intron | 45.0% | |
AGAGTGTACGAGTTGTTGGA+CGG | + | chr3_1:4407180-4407199 | Msa0345270:CDS | 45.0% | |
TCATCGTCATCACGATCCAA+TGG | - | chr3_1:4407267-4407286 | None:intergenic | 45.0% | |
AATCACACCTTCAGTTCAGC+TGG | + | chr3_1:4407344-4407363 | Msa0345270:CDS | 45.0% | |
CTTCTTACCTTCCGAATAGG+TGG | - | chr3_1:4408454-4408473 | None:intergenic | 45.0% | |
CGTCTTCTTACCTTCCGAAT+AGG | - | chr3_1:4408457-4408476 | None:intergenic | 45.0% | |
CATTGGCATGATCCCGAAAA+TGG | + | chr3_1:4408579-4408598 | Msa0345270:intron | 45.0% | |
TTGCGTGTGCAAGAATTGGA+GGG | + | chr3_1:4409568-4409587 | Msa0345270:CDS | 45.0% | |
!! | ACTTGCTTTTGGCAAAGGCT+CGG | + | chr3_1:4403081-4403100 | Msa0345270:CDS | 45.0% |
AACAGTGGGAAATCCATGGA+AGG | + | chr3_1:4409997-4410016 | Msa0345270:CDS | 45.0% | |
CAAGTCGAGTACACCTATGA+TGG | - | chr3_1:4410074-4410093 | None:intergenic | 45.0% | |
AGTGGTTCATATTGAGTCCG+AGG | + | chr3_1:4410189-4410208 | Msa0345270:CDS | 45.0% | |
TCTATGCATTGAGCAACCTG+AGG | + | chr3_1:4410311-4410330 | Msa0345270:CDS | 45.0% | |
TAGAACTGGAGTTCCTCCAA+AGG | + | chr3_1:4410441-4410460 | Msa0345270:CDS | 45.0% | |
! | AAAGCACCAATCCAGCAAGT+AGG | - | chr3_1:4410473-4410492 | None:intergenic | 45.0% |
!!! | TAAGTTTTTAAATATAAAAA+AGG | - | chr3_1:4404091-4404110 | None:intergenic | 5.0% |
!!! | AAATAAAAAAACATATATTT+TGG | + | chr3_1:4409385-4409404 | Msa0345270:intron | 5.0% |
CTGGTGTGTGCAAGAATTGG+AGG | + | chr3_1:4402759-4402778 | Msa0345270:CDS | 50.0% | |
TCGGTCAGGTAAGCTGATGA+AGG | - | chr3_1:4402873-4402892 | None:intergenic | 50.0% | |
GCCTATTGTGGGTCTTCTAG+TGG | + | chr3_1:4402935-4402954 | Msa0345270:CDS | 50.0% | |
! | TGCTTTTGGCAAAGGCTCAG+AGG | + | chr3_1:4403084-4403103 | Msa0345270:CDS | 50.0% |
GTCACCGACAAGGTCAACAT+AGG | + | chr3_1:4403250-4403269 | Msa0345270:CDS | 50.0% | |
CATTGTGGAAGCTCCACTGA+TGG | + | chr3_1:4403946-4403965 | Msa0345270:intron | 50.0% | |
AAAGTACGGGATTCGAACCC+CGG | - | chr3_1:4404188-4404207 | None:intergenic | 50.0% | |
ACTCGTGAGCTTAGCTCAGT+TGG | - | chr3_1:4404235-4404254 | None:intergenic | 50.0% | |
GCGGATAATGCTACTATGGC+AGG | + | chr3_1:4404532-4404551 | Msa0345270:intron | 50.0% | |
ATTATTGTCTCCGCGCTCGT+AGG | + | chr3_1:4404706-4404725 | Msa0345270:intron | 50.0% | |
TTATTGTCTCCGCGCTCGTA+GGG | + | chr3_1:4404707-4404726 | Msa0345270:intron | 50.0% | |
TGTCCTTGACAAGATGTGCC+GGG | + | chr3_1:4404964-4404983 | Msa0345270:intron | 50.0% | |
GCTAGGATTTGTGGACCACA+TGG | + | chr3_1:4406451-4406470 | Msa0345270:intron | 50.0% | |
! | CTATGACTGTTGGCTGGAGT+TGG | + | chr3_1:4406541-4406560 | Msa0345270:intron | 50.0% |
! | TTTAGGTGAGTTGAGCTCCG+GGG | - | chr3_1:4406671-4406690 | None:intergenic | 50.0% |
! | GTTTAGGTGAGTTGAGCTCC+GGG | - | chr3_1:4406672-4406691 | None:intergenic | 50.0% |
!! | GGCCTATAGATTTGTTGGGC+CGG | + | chr3_1:4406835-4406854 | Msa0345270:intron | 50.0% |
AGCCGGCCCAACAAATCTAT+AGG | - | chr3_1:4406840-4406859 | None:intergenic | 50.0% | |
!! | ATAGATTTGTTGGGCCGGCT+CGG | + | chr3_1:4406840-4406859 | Msa0345270:intron | 50.0% |
GGAGCATACCGTTGTATCTG+CGG | - | chr3_1:4406921-4406940 | None:intergenic | 50.0% | |
CTCTCCCTTGACGATGCATT+AGG | + | chr3_1:4407039-4407058 | Msa0345270:intron | 50.0% | |
!! | TAAGTTGGTAGGGTCCCTCA+AGG | + | chr3_1:4407607-4407626 | Msa0345270:intron | 50.0% |
GTAGGGTCCCTCAAGGTTTA+GGG | + | chr3_1:4407614-4407633 | Msa0345270:intron | 50.0% | |
TAGGGTCCCTCAAGGTTTAG+GGG | + | chr3_1:4407615-4407634 | Msa0345270:intron | 50.0% | |
GCGAATGTTCACACATGAGC+TGG | - | chr3_1:4408289-4408308 | None:intergenic | 50.0% | |
! | GGATGAGAAGTGTGCTGAGT+TGG | - | chr3_1:4408327-4408346 | None:intergenic | 50.0% |
!! | GAACGGAGGGAGTATTTGCA+GGG | + | chr3_1:4409314-4409333 | Msa0345270:intron | 50.0% |
!! | AACGGAGGGAGTATTTGCAG+GGG | + | chr3_1:4409315-4409334 | Msa0345270:intron | 50.0% |
CTTGCGTGTGCAAGAATTGG+AGG | + | chr3_1:4409567-4409586 | Msa0345270:CDS | 50.0% | |
TCGGTCAGCTATGCTGATGA+AGG | - | chr3_1:4409681-4409700 | None:intergenic | 50.0% | |
TACACCTATGATGGCCTCGT+TGG | - | chr3_1:4410065-4410084 | None:intergenic | 50.0% | |
ATGCATTGAGCAACCTGAGG+AGG | + | chr3_1:4410314-4410333 | Msa0345270:CDS | 50.0% | |
ATTGAGCAACCTGAGGAGGT+GGG | + | chr3_1:4410318-4410337 | Msa0345270:CDS | 50.0% | |
TTTCAAAACCCCACCTCCTC+AGG | - | chr3_1:4410330-4410349 | None:intergenic | 50.0% | |
TAAGCCAAACCCTACGAGCG+CGG | - | chr3_1:4404719-4404738 | None:intergenic | 55.0% | |
CTTCCCGGCACATCTTGTCA+AGG | - | chr3_1:4404970-4404989 | None:intergenic | 55.0% | |
CTCTGTCGCCGCAGATACAA+CGG | + | chr3_1:4406910-4406929 | Msa0345270:intron | 55.0% | |
CCAGTGTCCAGCTGAACTGA+AGG | - | chr3_1:4407354-4407373 | None:intergenic | 55.0% | |
CCTTCAGTTCAGCTGGACAC+TGG | + | chr3_1:4407351-4407370 | Msa0345270:CDS | 55.0% | |
GGTAGGGTCCCTCAAGGTTT+AGG | + | chr3_1:4407613-4407632 | Msa0345270:intron | 55.0% | |
!! | GGAACGGAGGGAGTATTTGC+AGG | + | chr3_1:4409313-4409332 | Msa0345270:intron | 55.0% |
! | TGCTTTTGGCAAAGGCTCGG+AGG | + | chr3_1:4409892-4409911 | Msa0345270:CDS | 55.0% |
GTCACCAACGAGGCCATCAT+AGG | + | chr3_1:4410058-4410077 | Msa0345270:CDS | 55.0% | |
CATTGAGCAACCTGAGGAGG+TGG | + | chr3_1:4410317-4410336 | Msa0345270:CDS | 55.0% | |
TTGAGCAACCTGAGGAGGTG+GGG | + | chr3_1:4410319-4410338 | Msa0345270:CDS | 55.0% | |
AGTTGAGCTCCGGGGCACAT+CGG | - | chr3_1:4406663-4406682 | None:intergenic | 60.0% | |
AGTCGGGTTCATCACCGAGC+CGG | - | chr3_1:4406857-4406876 | None:intergenic | 60.0% | |
CGGCGACAGAGCTGAAGTGA+GGG | - | chr3_1:4406901-4406920 | None:intergenic | 60.0% | |
GTCTCCGCGCTCGTAGGGTT+TGG | + | chr3_1:4404712-4404731 | Msa0345270:intron | 65.0% | |
GGAACCTTGCCGATGTGCCC+CGG | + | chr3_1:4406651-4406670 | Msa0345270:intron | 65.0% | |
GCGGCGACAGAGCTGAAGTG+AGG | - | chr3_1:4406902-4406921 | None:intergenic | 65.0% | |
AGCTCCGGGGCACATCGGCA+AGG | - | chr3_1:4406658-4406677 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 4402662 | 4410531 | 4402662 | ID=Msa0345270;Name=Msa0345270 |
chr3_1 | mRNA | 4402662 | 4410531 | 4402662 | ID=Msa0345270-mRNA-1;Parent=Msa0345270;Name=Msa0345270-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0.2|0|6|0|735 |
chr3_1 | exon | 4402662 | 4402895 | 4402662 | ID=Msa0345270-mRNA-1:exon:1423;Parent=Msa0345270-mRNA-1 |
chr3_1 | exon | 4402911 | 4403150 | 4402911 | ID=Msa0345270-mRNA-1:exon:1424;Parent=Msa0345270-mRNA-1 |
chr3_1 | exon | 4403211 | 4403452 | 4403211 | ID=Msa0345270-mRNA-1:exon:1425;Parent=Msa0345270-mRNA-1 |
chr3_1 | exon | 4403528 | 4403717 | 4403528 | ID=Msa0345270-mRNA-1:exon:1426;Parent=Msa0345270-mRNA-1 |
chr3_1 | exon | 4407138 | 4407372 | 4407138 | ID=Msa0345270-mRNA-1:exon:1427;Parent=Msa0345270-mRNA-1 |
chr3_1 | exon | 4409468 | 4410531 | 4409468 | ID=Msa0345270-mRNA-1:exon:1428;Parent=Msa0345270-mRNA-1 |
chr3_1 | CDS | 4402662 | 4402895 | 4402662 | ID=Msa0345270-mRNA-1:cds;Parent=Msa0345270-mRNA-1 |
chr3_1 | CDS | 4402911 | 4403150 | 4402911 | ID=Msa0345270-mRNA-1:cds;Parent=Msa0345270-mRNA-1 |
chr3_1 | CDS | 4403211 | 4403452 | 4403211 | ID=Msa0345270-mRNA-1:cds;Parent=Msa0345270-mRNA-1 |
chr3_1 | CDS | 4403528 | 4403717 | 4403528 | ID=Msa0345270-mRNA-1:cds;Parent=Msa0345270-mRNA-1 |
chr3_1 | CDS | 4407138 | 4407372 | 4407138 | ID=Msa0345270-mRNA-1:cds;Parent=Msa0345270-mRNA-1 |
chr3_1 | CDS | 4409468 | 4410531 | 4409468 | ID=Msa0345270-mRNA-1:cds;Parent=Msa0345270-mRNA-1 |
Gene Sequence |
Protein sequence |