Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346330 | XP_013458789.1 | 96.162 | 469 | 18 | 0 | 1 | 469 | 1 | 469 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346330 | sp|Q05D32|CTSL2_HUMAN | 51.471 | 204 | 93 | 5 | 265 | 464 | 256 | 457 | 3.87e-58 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346330 | A0A072UU09 | 96.162 | 469 | 18 | 0 | 1 | 469 | 1 | 469 | 0.0 | 936 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0346330 | Msa0488440 | 0.805235 | 1.472190e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346330 | MtrunA17_Chr3g0078241 | 96.162 | 469 | 18 | 0 | 1 | 469 | 1 | 469 | 0.0 | 936 |
| Msa0346330 | MtrunA17_Chr2g0303951 | 40.417 | 480 | 263 | 12 | 1 | 468 | 1 | 469 | 1.15e-100 | 309 |
| Msa0346330 | MtrunA17_Chr3g0122541 | 58.537 | 205 | 77 | 4 | 266 | 465 | 247 | 448 | 1.21e-61 | 208 |
| Msa0346330 | MtrunA17_Chr5g0419741 | 52.486 | 181 | 85 | 1 | 285 | 464 | 114 | 294 | 2.80e-57 | 191 |
| Msa0346330 | MtrunA17_Chr3g0122521 | 58.960 | 173 | 67 | 3 | 294 | 465 | 18 | 187 | 6.26e-54 | 179 |
| Msa0346330 | MtrunA17_Chr2g0284551 | 42.286 | 175 | 97 | 3 | 284 | 457 | 98 | 269 | 2.13e-28 | 114 |
| Msa0346330 | MtrunA17_Chr3g0113611 | 34.123 | 211 | 116 | 6 | 277 | 465 | 53 | 262 | 1.27e-21 | 94.4 |
| Msa0346330 | MtrunA17_Chr5g0437111 | 38.144 | 194 | 97 | 6 | 294 | 465 | 96 | 288 | 1.45e-21 | 95.1 |
| Msa0346330 | MtrunA17_Chr5g0446321 | 34.426 | 183 | 96 | 6 | 282 | 460 | 181 | 343 | 2.29e-19 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346330 | AT5G46410.2 | 37.988 | 487 | 252 | 19 | 1 | 468 | 1 | 456 | 1.60e-77 | 249 |
| Msa0346330 | AT5G46410.3 | 37.475 | 491 | 246 | 20 | 1 | 468 | 1 | 453 | 9.25e-77 | 247 |
| Msa0346330 | AT5G46410.1 | 37.475 | 491 | 246 | 20 | 1 | 468 | 1 | 453 | 9.25e-77 | 247 |
| Msa0346330 | AT4G18140.4 | 56.951 | 223 | 91 | 5 | 250 | 468 | 220 | 441 | 2.51e-75 | 243 |
| Msa0346330 | AT4G18140.6 | 56.951 | 223 | 91 | 5 | 250 | 468 | 220 | 441 | 2.51e-75 | 243 |
| Msa0346330 | AT4G18140.5 | 56.951 | 223 | 91 | 5 | 250 | 468 | 220 | 441 | 2.51e-75 | 243 |
| Msa0346330 | AT4G18140.1 | 56.561 | 221 | 91 | 5 | 250 | 466 | 220 | 439 | 3.54e-74 | 240 |
| Msa0346330 | AT4G18140.2 | 56.561 | 221 | 91 | 5 | 250 | 466 | 220 | 439 | 3.54e-74 | 240 |
| Msa0346330 | AT4G18140.3 | 56.818 | 220 | 90 | 5 | 250 | 465 | 220 | 438 | 6.70e-74 | 239 |
| Msa0346330 | AT5G11860.3 | 61.749 | 183 | 68 | 2 | 283 | 464 | 99 | 280 | 3.68e-72 | 231 |
| Msa0346330 | AT5G11860.5 | 61.749 | 183 | 68 | 2 | 283 | 464 | 99 | 280 | 3.68e-72 | 231 |
| Msa0346330 | AT5G11860.1 | 61.749 | 183 | 68 | 2 | 283 | 464 | 99 | 280 | 3.68e-72 | 231 |
| Msa0346330 | AT5G11860.4 | 61.749 | 183 | 68 | 2 | 283 | 464 | 99 | 280 | 3.68e-72 | 231 |
| Msa0346330 | AT5G11860.2 | 61.749 | 183 | 68 | 2 | 283 | 464 | 99 | 280 | 3.68e-72 | 231 |
| Msa0346330 | AT1G29780.1 | 40.698 | 172 | 99 | 3 | 297 | 466 | 51 | 221 | 8.06e-35 | 130 |
| Msa0346330 | AT5G45700.1 | 41.667 | 168 | 96 | 2 | 297 | 462 | 99 | 266 | 2.92e-31 | 121 |
| Msa0346330 | AT1G29770.1 | 39.785 | 186 | 105 | 5 | 285 | 467 | 95 | 276 | 2.93e-31 | 122 |
| Msa0346330 | AT3G55960.1 | 37.186 | 199 | 98 | 9 | 291 | 465 | 93 | 288 | 8.42e-22 | 95.9 |
| Msa0346330 | AT1G55900.2 | 31.638 | 177 | 101 | 5 | 294 | 467 | 188 | 347 | 1.09e-15 | 79.0 |
| Msa0346330 | AT1G55900.1 | 31.638 | 177 | 101 | 5 | 294 | 467 | 188 | 347 | 1.19e-15 | 79.0 |
| Msa0346330 | AT1G43610.1 | 28.947 | 190 | 97 | 5 | 290 | 448 | 47 | 229 | 1.21e-14 | 74.3 |
| Msa0346330 | AT1G43600.1 | 31.973 | 147 | 80 | 4 | 298 | 431 | 21 | 160 | 1.60e-13 | 70.1 |
| Msa0346330 | AT5G54210.1 | 27.619 | 210 | 117 | 7 | 238 | 431 | 41 | 231 | 1.68e-13 | 71.6 |
| Msa0346330 | AT1G20320.1 | 31.646 | 158 | 83 | 6 | 294 | 436 | 75 | 222 | 2.20e-11 | 65.5 |
| Msa0346330 | AT3G17550.1 | 30.000 | 150 | 86 | 4 | 294 | 431 | 84 | 226 | 6.30e-11 | 63.5 |
Find 106 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTCTTTACTTCCCTTTC+TGG | 0.097640 | 3_1:-6703207 | Msa0346330:CDS |
| ATATCAGGTATTTCGAAATT+TGG | 0.119769 | 3_1:+6704580 | None:intergenic |
| TTAAGATCATTTCAACTTAT+TGG | 0.165953 | 3_1:+6707395 | None:intergenic |
| ACCAAAGATTTGACAGTTCT+TGG | 0.197757 | 3_1:-6703715 | Msa0346330:CDS |
| ACAGAGGCTGTGTTAATTAA+TGG | 0.241927 | 3_1:-6702858 | Msa0346330:three_prime_UTR |
| TTCAGAAATAGCTATGATTC+TGG | 0.252842 | 3_1:-6702985 | Msa0346330:three_prime_UTR |
| AGGATCCTGTGAAGAGTTTC+AGG | 0.253011 | 3_1:-6704380 | Msa0346330:CDS |
| TTTGGTCTCTGCAGTTAATA+AGG | 0.260231 | 3_1:-6704647 | Msa0346330:intron |
| AGAGATATTCATAAGCTTCT+TGG | 0.304963 | 3_1:-6704239 | Msa0346330:CDS |
| TCATGCCAAACATATCTTAA+TGG | 0.308449 | 3_1:-6707200 | Msa0346330:CDS |
| TCAAATTTCTCTGCGATAAT+CGG | 0.313863 | 3_1:+6703155 | None:intergenic |
| TGTTACCCTTGTTCTTGATT+TGG | 0.319591 | 3_1:-6704152 | Msa0346330:CDS |
| ACACTGTCTATGTGCGAAAA+AGG | 0.330339 | 3_1:-6703909 | Msa0346330:CDS |
| TACTCCTTGTCAAGTAAAAC+TGG | 0.332299 | 3_1:+6703931 | None:intergenic |
| TTTGCAAGCTGTAGGAGATT+TGG | 0.339006 | 3_1:+6707325 | None:intergenic |
| GGAAGATCGTATAACAAATT+TGG | 0.344441 | 3_1:+6704448 | None:intergenic |
| TCCAAGAACTGTCAAATCTT+TGG | 0.348444 | 3_1:+6703714 | None:intergenic |
| CATTGTAACTTATTTGAAAC+AGG | 0.356700 | 3_1:-6705371 | Msa0346330:intron |
| ATTGATGCCAGCAGTTAAAA+TGG | 0.362284 | 3_1:-6707351 | Msa0346330:exon |
| TTTCTTCATCACATGACATT+TGG | 0.365424 | 3_1:+6706981 | None:intergenic |
| TAAGCAAGGAGACAAGTAAA+AGG | 0.380226 | 3_1:-6704180 | Msa0346330:CDS |
| TTAACTGCTGGCATCAATGC+TGG | 0.393130 | 3_1:+6707356 | None:intergenic |
| TACCACCATTAAGATATGTT+TGG | 0.394938 | 3_1:+6707195 | None:intergenic |
| TATGTGGATGAAGCATTCTT+CGG | 0.396115 | 3_1:-6704547 | Msa0346330:CDS |
| ACATAGTAGTCTAACATATC+AGG | 0.399328 | 3_1:+6704565 | None:intergenic |
| ATGTGGATGAAGCATTCTTC+GGG | 0.403727 | 3_1:-6704546 | Msa0346330:CDS |
| TCAGAAATAGCTATGATTCT+GGG | 0.405810 | 3_1:-6702984 | Msa0346330:three_prime_UTR |
| CAGAGGCTGTGTTAATTAAT+GGG | 0.406909 | 3_1:-6702857 | Msa0346330:three_prime_UTR |
| TCATCAAACCAACTCTCAAT+AGG | 0.412269 | 3_1:+6703248 | None:intergenic |
| ATGCTTTCGTCAAGGGTACT+AGG | 0.416784 | 3_1:+6704427 | None:intergenic |
| AGCCAATGCCTGATTCTTCA+TGG | 0.422624 | 3_1:-6704357 | Msa0346330:CDS |
| CTATGAAGGGCGAGGAGGTC+CGG | 0.436459 | 3_1:+6703103 | None:intergenic |
| GTTCAATGTCATTTGCCATC+AGG | 0.445330 | 3_1:-6704335 | Msa0346330:CDS |
| AGCAAATTCAAGATCGGAAA+AGG | 0.445909 | 3_1:+6704474 | None:intergenic |
| CTGAGGAGAGTTGTCTACTA+TGG | 0.448136 | 3_1:+6703672 | None:intergenic |
| AAGTTACAATGGGCATCATC+AGG | 0.461348 | 3_1:+6705383 | None:intergenic |
| TGCTTCTATGCTTTCGTCAA+GGG | 0.461989 | 3_1:+6704420 | None:intergenic |
| AAGAAGCTTATGAATATCTC+TGG | 0.466228 | 3_1:+6704241 | None:intergenic |
| GCATCATGTTCTTCAGTAAG+TGG | 0.473251 | 3_1:+6704307 | None:intergenic |
| CTTCACAGGATCCTACATAT+TGG | 0.474904 | 3_1:+6704389 | None:intergenic |
| CTGCTTCTATGCTTTCGTCA+AGG | 0.478495 | 3_1:+6704419 | None:intergenic |
| TACTAGAGCTGGCAATGAGT+TGG | 0.481285 | 3_1:+6704201 | None:intergenic |
| CAGTAAGTGGCTTGGCCTGA+TGG | 0.481696 | 3_1:+6704320 | None:intergenic |
| GTCTCCTTGCTTACTAGAGC+TGG | 0.484300 | 3_1:+6704190 | None:intergenic |
| CTGTCATCCGCTCGATCAGG+TGG | 0.487999 | 3_1:+6704610 | None:intergenic |
| ACCCTTGTTCTTGATTTGGA+TGG | 0.489792 | 3_1:-6704148 | Msa0346330:intron |
| TTATCTGCACAACCATTGAA+TGG | 0.493843 | 3_1:+6706935 | None:intergenic |
| TTACTGTCATCCGCTCGATC+AGG | 0.495088 | 3_1:+6704607 | None:intergenic |
| GACATTGCAGAAACAGAAAC+CGG | 0.496076 | 3_1:+6705440 | None:intergenic |
| TGTTTCAAATAAGTTACAAT+GGG | 0.499624 | 3_1:+6705373 | None:intergenic |
| TAACTGCTGGCATCAATGCT+GGG | 0.500702 | 3_1:+6707357 | None:intergenic |
| TCAGACTGCAAGTTAACAAT+GGG | 0.500724 | 3_1:-6703274 | Msa0346330:CDS |
| TCAACGAGTTTCTCCAGAAA+GGG | 0.501744 | 3_1:+6703194 | None:intergenic |
| ATAATCGACTAATTCTATGA+AGG | 0.502725 | 3_1:+6703089 | None:intergenic |
| ACATTGAACCATGAAGAATC+AGG | 0.505703 | 3_1:+6704349 | None:intergenic |
| ATCTAAATCTTCCATTGCAT+CGG | 0.506886 | 3_1:+6707226 | None:intergenic |
| GATATTCATAAGCTTCTTGG+AGG | 0.517387 | 3_1:-6704236 | Msa0346330:CDS |
| TGCAGATAAGATAGTAGAAA+CGG | 0.517652 | 3_1:-6706921 | Msa0346330:intron |
| TAGTCGAGACCATCATCAAA+TGG | 0.518538 | 3_1:+6704502 | None:intergenic |
| AGAATCAAGCTGACATGACC+TGG | 0.521297 | 3_1:+6704285 | None:intergenic |
| AATGTGCAAGACAACTAGGC+AGG | 0.526575 | 3_1:+6703029 | None:intergenic |
| ATGGGATTCCTATTGAGAGT+TGG | 0.527202 | 3_1:-6703256 | Msa0346330:CDS |
| TTCTTACAGGTTAACTGCAA+AGG | 0.528796 | 3_1:-6707426 | Msa0346330:five_prime_UTR |
| TATCTGCACAACCATTGAAT+GGG | 0.529518 | 3_1:+6706936 | None:intergenic |
| CTTGATAGATGCACGAATCT+CGG | 0.530294 | 3_1:+6703749 | None:intergenic |
| CATAGTAGACAACTCTCCTC+AGG | 0.530342 | 3_1:-6703671 | Msa0346330:intron |
| ATGTTCTTCAGTAAGTGGCT+TGG | 0.530771 | 3_1:+6704312 | None:intergenic |
| GAAATCAAAGCAGAATCAGA+TGG | 0.530841 | 3_1:+6703224 | None:intergenic |
| AAAAGACCATGTTCGATGGT+TGG | 0.536595 | 3_1:-6707254 | Msa0346330:CDS |
| AACCATGAAGAATCAGGCAT+TGG | 0.542330 | 3_1:+6704355 | None:intergenic |
| TGGTCCAGCAAATTCAAGAT+CGG | 0.545038 | 3_1:+6704468 | None:intergenic |
| ATCAACGAGTTTCTCCAGAA+AGG | 0.548402 | 3_1:+6703193 | None:intergenic |
| TAATCGACTAATTCTATGAA+GGG | 0.551086 | 3_1:+6703090 | None:intergenic |
| AAGAGCAGTCTCCCATTCAA+TGG | 0.555275 | 3_1:-6706947 | Msa0346330:CDS |
| CTAAAATGTGCAAGACAACT+AGG | 0.557100 | 3_1:+6703025 | None:intergenic |
| GCAGCAAGCTACCAATATGT+AGG | 0.557348 | 3_1:-6704400 | Msa0346330:CDS |
| TGTAAATAAAGAATATTCAA+AGG | 0.559231 | 3_1:-6707023 | Msa0346330:CDS |
| TGGCTCCTGAAACTCTTCAC+AGG | 0.559633 | 3_1:+6704375 | None:intergenic |
| CTGTTTCAAATAAGTTACAA+TGG | 0.561448 | 3_1:+6705372 | None:intergenic |
| GGGATCAATCCATTTGATGA+TGG | 0.567091 | 3_1:-6704511 | Msa0346330:CDS |
| ATCTAAAAGACCATGTTCGA+TGG | 0.567201 | 3_1:-6707258 | Msa0346330:CDS |
| TGTGATGAAGAAACAATTGT+GGG | 0.571140 | 3_1:-6706971 | Msa0346330:CDS |
| TACCATCCAAATCAAGAACA+AGG | 0.575097 | 3_1:+6704146 | None:intergenic |
| GACTAATTCTATGAAGGGCG+AGG | 0.578931 | 3_1:+6703095 | None:intergenic |
| GGTTGGAGTAACCGATGCAA+TGG | 0.582451 | 3_1:-6707237 | Msa0346330:CDS |
| TCTGGAGAAACTCGTTGATG+TGG | 0.587394 | 3_1:-6703189 | Msa0346330:CDS |
| CAGAAATAGCTATGATTCTG+GGG | 0.589495 | 3_1:-6702983 | Msa0346330:three_prime_UTR |
| TTCAGACTGCAAGTTAACAA+TGG | 0.590311 | 3_1:-6703275 | Msa0346330:CDS |
| ATTGCCAGCTCTAGTAAGCA+AGG | 0.597516 | 3_1:-6704194 | Msa0346330:CDS |
| ATGTGCAAGACAACTAGGCA+GGG | 0.600660 | 3_1:+6703030 | None:intergenic |
| GACTAACCCACCTGATCGAG+CGG | 0.602487 | 3_1:-6704617 | Msa0346330:CDS |
| GATTCGTGCATCTATCAAGA+TGG | 0.603464 | 3_1:-6703745 | Msa0346330:CDS |
| CATATTGCGCCATTGTAGAG+TGG | 0.608045 | 3_1:+6703977 | None:intergenic |
| GTTACTCCAACCATCGAACA+TGG | 0.611855 | 3_1:+6707248 | None:intergenic |
| TTACTGAAGAACATGATGCC+AGG | 0.616908 | 3_1:-6704303 | Msa0346330:CDS |
| TGCCAAACATATCTTAATGG+TGG | 0.628746 | 3_1:-6707197 | Msa0346330:intron |
| ATGTGATGAAGAAACAATTG+TGG | 0.631533 | 3_1:-6706972 | Msa0346330:CDS |
| TTTGACTTCTGAGACACATG+AGG | 0.634096 | 3_1:+6707287 | None:intergenic |
| AACACTGATCCACTCTACAA+TGG | 0.642575 | 3_1:-6703986 | Msa0346330:CDS |
| TGATATGTTAGACTACTATG+TGG | 0.652262 | 3_1:-6704563 | Msa0346330:CDS |
| ACCATCCAAATCAAGAACAA+GGG | 0.657637 | 3_1:+6704147 | None:intergenic |
| TGTCATCCGCTCGATCAGGT+GGG | 0.666821 | 3_1:+6704611 | None:intergenic |
| TAATTCTATGAAGGGCGAGG+AGG | 0.669597 | 3_1:+6703098 | None:intergenic |
| GATGCCAGCAGTTAAAATGG+TGG | 0.684628 | 3_1:-6707348 | Msa0346330:CDS |
| CTTACTGAACTATAGTACAG+AGG | 0.712816 | 3_1:-6702874 | Msa0346330:three_prime_UTR |
| GTGATGAAGAAACAATTGTG+GGG | 0.742374 | 3_1:-6706970 | Msa0346330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATTTTATTTTTTA+TGG | - | chr3_1:6704776-6704795 | Msa0346330:intron | 0.0% |
| !!! | TACTGTTTTTTTTTTTTTTT+TGG | - | chr3_1:6704931-6704950 | Msa0346330:intron | 10.0% |
| !!! | CAAAATTATTTTATACATTT+TGG | + | chr3_1:6706227-6706246 | None:intergenic | 10.0% |
| !! | ATTATATCTTAATACATATT+TGG | - | chr3_1:6706678-6706697 | Msa0346330:intron | 10.0% |
| !!! | AATAATTTTATTTCAAGTTT+TGG | - | chr3_1:6707331-6707350 | Msa0346330:CDS | 10.0% |
| !! | TGTAAATAAAGAATATTCAA+AGG | - | chr3_1:6703228-6703247 | Msa0346330:CDS | 15.0% |
| !!! | TTTATTTTATTTTTTATGGC+AGG | - | chr3_1:6704780-6704799 | Msa0346330:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGGTG+TGG | - | chr3_1:6704936-6704955 | Msa0346330:intron | 15.0% |
| !!! | ATCAAACATTTATATTGATT+AGG | + | chr3_1:6705484-6705503 | None:intergenic | 15.0% |
| !! | TAATCAATATAAATGTTTGA+TGG | - | chr3_1:6705483-6705502 | Msa0346330:intron | 15.0% |
| !! | ATTTCAATATTATTTACCAT+AGG | + | chr3_1:6706930-6706949 | None:intergenic | 15.0% |
| !! | TTAAGATCATTTCAACTTAT+TGG | + | chr3_1:6702859-6702878 | None:intergenic | 20.0% |
| !! | AACATAATTTATACAAAGAC+AGG | + | chr3_1:6703398-6703417 | None:intergenic | 20.0% |
| !! | ATATATATAACGAAACCTAA+TGG | + | chr3_1:6704075-6704094 | None:intergenic | 20.0% |
| !!! | ATTTGTTATTCTAACAAAGA+TGG | - | chr3_1:6704000-6704019 | Msa0346330:intron | 20.0% |
| !! | ATATATATAACGAAACCTAA+TGG | - | chr3_1:6704075-6704094 | Msa0346330:intron | 20.0% |
| !! | GATGTTAGATAATAAAGTAT+TGG | + | chr3_1:6704139-6704158 | None:intergenic | 20.0% |
| !! | CAATCATTATATAGAATCTA+AGG | + | chr3_1:6704362-6704381 | None:intergenic | 20.0% |
| !! | ACACACACAAAAATATAATA+AGG | + | chr3_1:6704552-6704571 | None:intergenic | 20.0% |
| !! | TGTTTCAAATAAGTTACAAT+GGG | + | chr3_1:6704881-6704900 | None:intergenic | 20.0% |
| !! | AAAAAAAACAGTATTCTAAC+AGG | + | chr3_1:6704924-6704943 | None:intergenic | 20.0% |
| !! | AAATTATCAAGACGAATAAA+GGG | + | chr3_1:6705264-6705283 | None:intergenic | 20.0% |
| !! | TGTACAATAGTGAAAATAAT+AGG | + | chr3_1:6705558-6705577 | None:intergenic | 20.0% |
| !! | TTATAACGATAAAAACACAT+CGG | + | chr3_1:6706152-6706171 | None:intergenic | 20.0% |
| !!! | TTATACATTTTGGAATAAGA+AGG | + | chr3_1:6706217-6706236 | None:intergenic | 20.0% |
| !!! | AGATATAATGCCAAATATTT+TGG | + | chr3_1:6706667-6706686 | None:intergenic | 20.0% |
| !! | GCATAATATAAATGTATCAT+TGG | - | chr3_1:6706813-6706832 | Msa0346330:intron | 20.0% |
| !!! | AATTAGTTTTGCATATATTC+CGG | - | chr3_1:6707129-6707148 | Msa0346330:intron | 20.0% |
| ! | TATGAATAAGATCCATGAAA+TGG | + | chr3_1:6703368-6703387 | None:intergenic | 25.0% |
| ! | GAAAAGAAATATGCAATAGT+TGG | - | chr3_1:6703502-6703521 | Msa0346330:intron | 25.0% |
| ! | GATGTTAGATGATAAAGTAT+TGG | - | chr3_1:6703848-6703867 | Msa0346330:CDS | 25.0% |
| !!! | AAGTATTGGACTTATGTTAT+TGG | - | chr3_1:6703862-6703881 | Msa0346330:CDS | 25.0% |
| !! | AGTATTGGACTTATGTTATT+GGG | - | chr3_1:6703863-6703882 | Msa0346330:CDS | 25.0% |
| ! | AACAAATAGACTAACAAAGA+CGG | + | chr3_1:6703987-6704006 | None:intergenic | 25.0% |
| !! | AGTATTGGACTTAAGTTATT+GGG | + | chr3_1:6704124-6704143 | None:intergenic | 25.0% |
| !!! | AAGTATTGGACTTAAGTTAT+TGG | + | chr3_1:6704125-6704144 | None:intergenic | 25.0% |
| !! | CATAAATAACTTGCATCAAA+TGG | + | chr3_1:6704266-6704285 | None:intergenic | 25.0% |
| !! | TATATAGAATCTAAGGTTAC+AGG | + | chr3_1:6704355-6704374 | None:intergenic | 25.0% |
| !!! | TACATTCTTGTCGTTTTATA+TGG | - | chr3_1:6704493-6704512 | Msa0346330:CDS | 25.0% |
| ! | TTGAGAATATATGAACAAAG+TGG | + | chr3_1:6704704-6704723 | None:intergenic | 25.0% |
| !!! | CATTGTTGTCTTATTTTAAC+AGG | - | chr3_1:6704845-6704864 | Msa0346330:intron | 25.0% |
| ! | CTGTTTCAAATAAGTTACAA+TGG | + | chr3_1:6704882-6704901 | None:intergenic | 25.0% |
| !! | CATTGTAACTTATTTGAAAC+AGG | - | chr3_1:6704880-6704899 | Msa0346330:intron | 25.0% |
| !! | AATAAGAAGCATATAAGTTG+AGG | - | chr3_1:6704988-6705007 | Msa0346330:intron | 25.0% |
| !!! | TTTTGGTTTAACTAAGGATT+TGG | + | chr3_1:6705019-6705038 | None:intergenic | 25.0% |
| ! | AAATCCTTAGTTAAACCAAA+AGG | - | chr3_1:6705018-6705037 | Msa0346330:intron | 25.0% |
| ! | TTTGTAAGAGACAATTTCAT+TGG | - | chr3_1:6705065-6705084 | Msa0346330:intron | 25.0% |
| ! | ATAGTAAATATGTGGATTTG+TGG | + | chr3_1:6705166-6705185 | None:intergenic | 25.0% |
| ! | ATGAGTATTATTTGCATCTT+TGG | - | chr3_1:6705203-6705222 | Msa0346330:intron | 25.0% |
| ! | CAAATTATCAAGACGAATAA+AGG | + | chr3_1:6705265-6705284 | None:intergenic | 25.0% |
| !! | CTTTATTCGTCTTGATAATT+TGG | - | chr3_1:6705263-6705282 | Msa0346330:intron | 25.0% |
| !! | TTTTGTATAAGAAAGACTGA+AGG | - | chr3_1:6705293-6705312 | Msa0346330:intron | 25.0% |
| !!! | AATTTTAGTCACCTTGTTAT+GGG | - | chr3_1:6705441-6705460 | Msa0346330:CDS | 25.0% |
| !! | TACATTAGTTTAATTCTAGC+TGG | - | chr3_1:6705507-6705526 | Msa0346330:intron | 25.0% |
| ! | ATATCAGGTATTTCGAAATT+TGG | + | chr3_1:6705674-6705693 | None:intergenic | 25.0% |
| ! | AGCAAGTAAAAAGATTTATG+CGG | - | chr3_1:6706424-6706443 | Msa0346330:intron | 25.0% |
| ! | AACCTATTATAACATGAAGA+CGG | + | chr3_1:6706614-6706633 | None:intergenic | 25.0% |
| ! | CATTCATGATCCAAAATATT+TGG | - | chr3_1:6706654-6706673 | Msa0346330:intron | 25.0% |
| ! | GAAAATTAGTCATCTAAATG+AGG | + | chr3_1:6706748-6706767 | None:intergenic | 25.0% |
| ! | TATAGGAGATTCATGAAAAT+TGG | + | chr3_1:6706774-6706793 | None:intergenic | 25.0% |
| ! | TCATAATGTAAATGCATCAT+TGG | - | chr3_1:6706858-6706877 | Msa0346330:intron | 25.0% |
| !! | ATAGTCCTTTTATATTTGTC+TGG | - | chr3_1:6706890-6706909 | Msa0346330:intron | 25.0% |
| ! | TTACCATAGGCAATAAATAA+AGG | + | chr3_1:6706917-6706936 | None:intergenic | 25.0% |
| ! | TAATCGACTAATTCTATGAA+GGG | + | chr3_1:6707164-6707183 | None:intergenic | 25.0% |
| ! | ATAATCGACTAATTCTATGA+AGG | + | chr3_1:6707165-6707184 | None:intergenic | 25.0% |
| ATCTAAATCTTCCATTGCAT+CGG | + | chr3_1:6703028-6703047 | None:intergenic | 30.0% | |
| TCATGCCAAACATATCTTAA+TGG | - | chr3_1:6703051-6703070 | Msa0346330:three_prime_UTR | 30.0% | |
| TACCACCATTAAGATATGTT+TGG | + | chr3_1:6703059-6703078 | None:intergenic | 30.0% | |
| !!! | TCGAAGGCATTTATTCTTTT+TGG | + | chr3_1:6703111-6703130 | None:intergenic | 30.0% |
| AGACATGTGTAACTAATAAG+TGG | + | chr3_1:6703194-6703213 | None:intergenic | 30.0% | |
| TTTCTTCATCACATGACATT+TGG | + | chr3_1:6703273-6703292 | None:intergenic | 30.0% | |
| ATGTGATGAAGAAACAATTG+TGG | - | chr3_1:6703279-6703298 | Msa0346330:CDS | 30.0% | |
| TGTGATGAAGAAACAATTGT+GGG | - | chr3_1:6703280-6703299 | Msa0346330:CDS | 30.0% | |
| TGCAGATAAGATAGTAGAAA+CGG | - | chr3_1:6703330-6703349 | Msa0346330:intron | 30.0% | |
| ATAAGATAGTAGAAACGGTA+AGG | - | chr3_1:6703335-6703354 | Msa0346330:intron | 30.0% | |
| AACGTCAAATTCAAAACCAA+TGG | + | chr3_1:6703726-6703745 | None:intergenic | 30.0% | |
| !!! | ATTGGTTTTGAATTTGACGT+TGG | - | chr3_1:6703725-6703744 | Msa0346330:CDS | 30.0% |
| !!! | TTGGTTTTGAATTTGACGTT+GGG | - | chr3_1:6703726-6703745 | Msa0346330:CDS | 30.0% |
| TTAGTAAGTTAGAGTCCATT+AGG | - | chr3_1:6703894-6703913 | Msa0346330:CDS | 30.0% | |
| CTCTCATAATGTTAAGCTAT+TGG | + | chr3_1:6704044-6704063 | None:intergenic | 30.0% | |
| CAATAGCTTAACATTATGAG+AGG | - | chr3_1:6704042-6704061 | Msa0346330:intron | 30.0% | |
| TTAGTAAGTTAGAGTCCATT+AGG | + | chr3_1:6703894-6703913 | None:intergenic | 30.0% | |
| TTGACTCATTGTGAGTTTAA+GGG | + | chr3_1:6704164-6704183 | None:intergenic | 30.0% | |
| ! | CTGCTTGATATATAGTTTTC+TGG | - | chr3_1:6704313-6704332 | Msa0346330:CDS | 30.0% |
| !!! | CTTGTCGTTTTATATGGTTT+AGG | - | chr3_1:6704499-6704518 | Msa0346330:CDS | 30.0% |
| !! | ACTTCTTTGATTTGTGAGTT+AGG | - | chr3_1:6704634-6704653 | Msa0346330:CDS | 30.0% |
| !!! | CTTACCTTTTGGTTTAACTA+AGG | + | chr3_1:6705025-6705044 | None:intergenic | 30.0% |
| ATTGTCTCTTACAAAATGAC+TGG | + | chr3_1:6705060-6705079 | None:intergenic | 30.0% | |
| ! | CATTGGTGATCATTATAAGA+CGG | - | chr3_1:6705082-6705101 | Msa0346330:intron | 30.0% |
| CCACTTACATAGTAAATATG+TGG | + | chr3_1:6705174-6705193 | None:intergenic | 30.0% | |
| CCACATATTTACTATGTAAG+TGG | - | chr3_1:6705171-6705190 | Msa0346330:intron | 30.0% | |
| ! | GATATACTTATGTCCAGTTT+TGG | + | chr3_1:6705346-6705365 | None:intergenic | 30.0% |
| !! | TCAAGTTCTAAATGCATGTA+AGG | + | chr3_1:6705413-6705432 | None:intergenic | 30.0% |
| !! | CAATTTTAGTCACCTTGTTA+TGG | - | chr3_1:6705440-6705459 | Msa0346330:CDS | 30.0% |
| !! | ATTTTAGTCACCTTGTTATG+GGG | - | chr3_1:6705442-6705461 | Msa0346330:CDS | 30.0% |
| ! | TTAGTTTAATTCTAGCTGGT+TGG | - | chr3_1:6705511-6705530 | Msa0346330:intron | 30.0% |
| TGTAACAAGTGTGTAAACTT+TGG | - | chr3_1:6705586-6705605 | Msa0346330:intron | 30.0% | |
| ACATAGTAGTCTAACATATC+AGG | + | chr3_1:6705689-6705708 | None:intergenic | 30.0% | |
| TGATATGTTAGACTACTATG+TGG | - | chr3_1:6705688-6705707 | Msa0346330:intron | 30.0% | |
| GGAAGATCGTATAACAAATT+TGG | + | chr3_1:6705806-6705825 | None:intergenic | 30.0% | |
| AAGAAGCTTATGAATATCTC+TGG | + | chr3_1:6706013-6706032 | None:intergenic | 30.0% | |
| AGAGATATTCATAAGCTTCT+TGG | - | chr3_1:6706012-6706031 | Msa0346330:intron | 30.0% | |
| ! | AATTCCAGTTTTACTTGACA+AGG | - | chr3_1:6706316-6706335 | Msa0346330:intron | 30.0% |
| TAAAATCGCGAATGATGTAT+AGG | + | chr3_1:6706791-6706810 | None:intergenic | 30.0% | |
| GCATTTACATTATGATGTGA+AGG | + | chr3_1:6706853-6706872 | None:intergenic | 30.0% | |
| AAGGACCAGACAAATATAAA+AGG | + | chr3_1:6706898-6706917 | None:intergenic | 30.0% | |
| TCAAACTTCTGTTCATGTTT+AGG | - | chr3_1:6706951-6706970 | Msa0346330:CDS | 30.0% | |
| TCAAATTTCTCTGCGATAAT+CGG | + | chr3_1:6707099-6707118 | None:intergenic | 30.0% | |
| TTCAGAAATAGCTATGATTC+TGG | - | chr3_1:6707266-6707285 | Msa0346330:CDS | 30.0% | |
| TCAGAAATAGCTATGATTCT+GGG | - | chr3_1:6707267-6707286 | Msa0346330:CDS | 30.0% | |
| TTCTTACAGGTTAACTGCAA+AGG | - | chr3_1:6702825-6702844 | Msa0346330:three_prime_UTR | 35.0% | |
| ATTGATGCCAGCAGTTAAAA+TGG | - | chr3_1:6702900-6702919 | Msa0346330:three_prime_UTR | 35.0% | |
| CTACAGCTTGCAAAAAAGAT+GGG | - | chr3_1:6702935-6702954 | Msa0346330:three_prime_UTR | 35.0% | |
| ATCTAAAAGACCATGTTCGA+TGG | - | chr3_1:6702993-6703012 | Msa0346330:three_prime_UTR | 35.0% | |
| TGCCAAACATATCTTAATGG+TGG | - | chr3_1:6703054-6703073 | Msa0346330:three_prime_UTR | 35.0% | |
| AGAATAAATGCCTTCGATCT+TGG | - | chr3_1:6703114-6703133 | Msa0346330:three_prime_UTR | 35.0% | |
| GTGATGAAGAAACAATTGTG+GGG | - | chr3_1:6703281-6703300 | Msa0346330:CDS | 35.0% | |
| TATCTGCACAACCATTGAAT+GGG | + | chr3_1:6703318-6703337 | None:intergenic | 35.0% | |
| TTATCTGCACAACCATTGAA+TGG | + | chr3_1:6703319-6703338 | None:intergenic | 35.0% | |
| GAATAAGATCCATGAAATGG+AGG | + | chr3_1:6703365-6703384 | None:intergenic | 35.0% | |
| ! | GATTTTTCTGAGTGACAACT+CGG | - | chr3_1:6703448-6703467 | Msa0346330:intron | 35.0% |
| ! | TGGTGACAACAATTTTGCTA+TGG | - | chr3_1:6703522-6703541 | Msa0346330:intron | 35.0% |
| TTGACTCATTGTGAGTTTGA+GGG | - | chr3_1:6703823-6703842 | Msa0346330:CDS | 35.0% | |
| CAATAGCTTAACATTACGAG+AGG | + | chr3_1:6703945-6703964 | None:intergenic | 35.0% | |
| CTCTCGTAATGTTAAGCTAT+TGG | - | chr3_1:6703943-6703962 | Msa0346330:CDS | 35.0% | |
| ! | GTTGACTCATTGTGAGTTTA+AGG | + | chr3_1:6704165-6704184 | None:intergenic | 35.0% |
| ! | TTTATGGCAGGATTCTTTTC+CGG | - | chr3_1:6704792-6704811 | Msa0346330:intron | 35.0% |
| AAACAGTATTCTAACAGGCA+AGG | + | chr3_1:6704919-6704938 | None:intergenic | 35.0% | |
| ! | GGTAGTATCTTCTTACCTTT+TGG | + | chr3_1:6705036-6705055 | None:intergenic | 35.0% |
| !!! | AGTTTTGGTGCTTTGATCAA+TGG | + | chr3_1:6705331-6705350 | None:intergenic | 35.0% |
| ! | ATTGATCAAAGCACCAAAAC+TGG | - | chr3_1:6705330-6705349 | Msa0346330:intron | 35.0% |
| ! | GTTCTAAATGCATGTAAGGA+TGG | + | chr3_1:6705409-6705428 | None:intergenic | 35.0% |
| TTTGGTCTCTGCAGTTAATA+AGG | - | chr3_1:6705604-6705623 | Msa0346330:intron | 35.0% | |
| ! | TATGTGGATGAAGCATTCTT+CGG | - | chr3_1:6705704-6705723 | Msa0346330:intron | 35.0% |
| AGCAAATTCAAGATCGGAAA+AGG | + | chr3_1:6705780-6705799 | None:intergenic | 35.0% | |
| ! | TTTTCCGATCTTGAATTTGC+TGG | - | chr3_1:6705779-6705798 | Msa0346330:intron | 35.0% |
| ACATTGAACCATGAAGAATC+AGG | + | chr3_1:6705905-6705924 | None:intergenic | 35.0% | |
| GATATTCATAAGCTTCTTGG+AGG | - | chr3_1:6706015-6706034 | Msa0346330:intron | 35.0% | |
| TAAGCAAGGAGACAAGTAAA+AGG | - | chr3_1:6706071-6706090 | Msa0346330:intron | 35.0% | |
| TGTTACCCTTGTTCTTGATT+TGG | - | chr3_1:6706099-6706118 | Msa0346330:intron | 35.0% | |
| ACCATCCAAATCAAGAACAA+GGG | + | chr3_1:6706107-6706126 | None:intergenic | 35.0% | |
| TACCATCCAAATCAAGAACA+AGG | + | chr3_1:6706108-6706127 | None:intergenic | 35.0% | |
| TACTCCTTGTCAAGTAAAAC+TGG | + | chr3_1:6706323-6706342 | None:intergenic | 35.0% | |
| ! | CGAGAAAAAAGTTTTCTGTC+AGG | + | chr3_1:6706473-6706492 | None:intergenic | 35.0% |
| ACCAAAGATTTGACAGTTCT+TGG | - | chr3_1:6706536-6706555 | Msa0346330:intron | 35.0% | |
| TCCAAGAACTGTCAAATCTT+TGG | + | chr3_1:6706540-6706559 | None:intergenic | 35.0% | |
| CTATTATAACATGAAGACGG+AGG | + | chr3_1:6706611-6706630 | None:intergenic | 35.0% | |
| CTCCGTCTTCATGTTATAAT+AGG | - | chr3_1:6706609-6706628 | Msa0346330:intron | 35.0% | |
| ! | GGTCCTTTATTTATTGCCTA+TGG | - | chr3_1:6706911-6706930 | Msa0346330:intron | 35.0% |
| TTCAGACTGCAAGTTAACAA+TGG | - | chr3_1:6706976-6706995 | Msa0346330:CDS | 35.0% | |
| TCAGACTGCAAGTTAACAAT+GGG | - | chr3_1:6706977-6706996 | Msa0346330:CDS | 35.0% | |
| TCATCAAACCAACTCTCAAT+AGG | + | chr3_1:6707006-6707025 | None:intergenic | 35.0% | |
| GAAATCAAAGCAGAATCAGA+TGG | + | chr3_1:6707030-6707049 | None:intergenic | 35.0% | |
| GATTTCTTTACTTCCCTTTC+TGG | - | chr3_1:6707044-6707063 | Msa0346330:intron | 35.0% | |
| CTAAAATGTGCAAGACAACT+AGG | + | chr3_1:6707229-6707248 | None:intergenic | 35.0% | |
| CAGAAATAGCTATGATTCTG+GGG | - | chr3_1:6707268-6707287 | Msa0346330:CDS | 35.0% | |
| CTTACTGAACTATAGTACAG+AGG | - | chr3_1:6707377-6707396 | Msa0346330:five_prime_UTR | 35.0% | |
| ACAGAGGCTGTGTTAATTAA+TGG | - | chr3_1:6707393-6707412 | Msa0346330:five_prime_UTR | 35.0% | |
| CAGAGGCTGTGTTAATTAAT+GGG | - | chr3_1:6707394-6707413 | Msa0346330:five_prime_UTR | 35.0% | |
| TTTGCAAGCTGTAGGAGATT+TGG | + | chr3_1:6702929-6702948 | None:intergenic | 40.0% | |
| !!! | CCATCTTTTTTGCAAGCTGT+AGG | + | chr3_1:6702937-6702956 | None:intergenic | 40.0% |
| CCTACAGCTTGCAAAAAAGA+TGG | - | chr3_1:6702934-6702953 | Msa0346330:three_prime_UTR | 40.0% | |
| !! | TTTGACTTCTGAGACACATG+AGG | + | chr3_1:6702967-6702986 | None:intergenic | 40.0% |
| AAAAGACCATGTTCGATGGT+TGG | - | chr3_1:6702997-6703016 | Msa0346330:three_prime_UTR | 40.0% | |
| ! | TTTTCCAATGCCAAGATCGA+AGG | + | chr3_1:6703127-6703146 | None:intergenic | 40.0% |
| TAGTTACACATGTCTGATGC+AGG | - | chr3_1:6703199-6703218 | Msa0346330:CDS | 40.0% | |
| GTATCTGGATAGTGTTTCAC+TGG | - | chr3_1:6703694-6703713 | Msa0346330:CDS | 40.0% | |
| ! | GTTGACTCATTGTGAGTTTG+AGG | - | chr3_1:6703822-6703841 | Msa0346330:CDS | 40.0% |
| TTACTTGATGTCTGCAATGC+AGG | - | chr3_1:6704435-6704454 | Msa0346330:CDS | 40.0% | |
| GACATTGCAGAAACAGAAAC+CGG | + | chr3_1:6704814-6704833 | None:intergenic | 40.0% | |
| AAGTTACAATGGGCATCATC+AGG | + | chr3_1:6704871-6704890 | None:intergenic | 40.0% | |
| ! | TAACAGGCAAGGTTTCAAGT+GGG | + | chr3_1:6704908-6704927 | None:intergenic | 40.0% |
| GTCTCTTACAAAATGACTGG+AGG | + | chr3_1:6705057-6705076 | None:intergenic | 40.0% | |
| TATCCATTAGCCCCATAACA+AGG | + | chr3_1:6705455-6705474 | None:intergenic | 40.0% | |
| ! | GTTATGGGGCTAATGGATAT+TGG | - | chr3_1:6705456-6705475 | Msa0346330:intron | 40.0% |
| ! | ATGTGGATGAAGCATTCTTC+GGG | - | chr3_1:6705705-6705724 | Msa0346330:intron | 40.0% |
| !! | TTCTTCGGGTTTTCTAGTGA+CGG | - | chr3_1:6705719-6705738 | Msa0346330:intron | 40.0% |
| GGGATCAATCCATTTGATGA+TGG | - | chr3_1:6705740-6705759 | Msa0346330:intron | 40.0% | |
| TAGTCGAGACCATCATCAAA+TGG | + | chr3_1:6705752-6705771 | None:intergenic | 40.0% | |
| TGGTCCAGCAAATTCAAGAT+CGG | + | chr3_1:6705786-6705805 | None:intergenic | 40.0% | |
| TGCTTCTATGCTTTCGTCAA+GGG | + | chr3_1:6705834-6705853 | None:intergenic | 40.0% | |
| CTTCACAGGATCCTACATAT+TGG | + | chr3_1:6705865-6705884 | None:intergenic | 40.0% | |
| AACCATGAAGAATCAGGCAT+TGG | + | chr3_1:6705899-6705918 | None:intergenic | 40.0% | |
| ! | GTTCAATGTCATTTGCCATC+AGG | - | chr3_1:6705916-6705935 | Msa0346330:intron | 40.0% |
| ATGTTCTTCAGTAAGTGGCT+TGG | + | chr3_1:6705942-6705961 | None:intergenic | 40.0% | |
| GCATCATGTTCTTCAGTAAG+TGG | + | chr3_1:6705947-6705966 | None:intergenic | 40.0% | |
| TTACTGAAGAACATGATGCC+AGG | - | chr3_1:6705948-6705967 | Msa0346330:intron | 40.0% | |
| !! | ACCCTTGTTCTTGATTTGGA+TGG | - | chr3_1:6706103-6706122 | Msa0346330:intron | 40.0% |
| AACACTGATCCACTCTACAA+TGG | - | chr3_1:6706265-6706284 | Msa0346330:intron | 40.0% | |
| ACACTGTCTATGTGCGAAAA+AGG | - | chr3_1:6706342-6706361 | Msa0346330:intron | 40.0% | |
| ATACTCTCTCCAAAAACTCG+TGG | + | chr3_1:6706376-6706395 | None:intergenic | 40.0% | |
| CTTGATAGATGCACGAATCT+CGG | + | chr3_1:6706505-6706524 | None:intergenic | 40.0% | |
| GATTCGTGCATCTATCAAGA+TGG | - | chr3_1:6706506-6706525 | Msa0346330:intron | 40.0% | |
| !!! | CTACTATGGCTACTTTTGCT+AGG | + | chr3_1:6706568-6706587 | None:intergenic | 40.0% |
| GTCATCTAAATGAGGCATGT+TGG | + | chr3_1:6706740-6706759 | None:intergenic | 40.0% | |
| ATGGGATTCCTATTGAGAGT+TGG | - | chr3_1:6706995-6707014 | Msa0346330:CDS | 40.0% | |
| TCAACGAGTTTCTCCAGAAA+GGG | + | chr3_1:6707060-6707079 | None:intergenic | 40.0% | |
| ATCAACGAGTTTCTCCAGAA+AGG | + | chr3_1:6707061-6707080 | None:intergenic | 40.0% | |
| TAACTGCTGGCATCAATGCT+GGG | + | chr3_1:6702897-6702916 | None:intergenic | 45.0% | |
| TTAACTGCTGGCATCAATGC+TGG | + | chr3_1:6702898-6702917 | None:intergenic | 45.0% | |
| GATGCCAGCAGTTAAAATGG+TGG | - | chr3_1:6702903-6702922 | Msa0346330:three_prime_UTR | 45.0% | |
| !!! | TTGGCCACCATTTTAACTGC+TGG | + | chr3_1:6702910-6702929 | None:intergenic | 45.0% |
| CAGCTTGCAAAAAAGATGGG+AGG | - | chr3_1:6702938-6702957 | Msa0346330:three_prime_UTR | 45.0% | |
| GTTACTCCAACCATCGAACA+TGG | + | chr3_1:6703006-6703025 | None:intergenic | 45.0% | |
| AATGCCTTCGATCTTGGCAT+TGG | - | chr3_1:6703120-6703139 | Msa0346330:exon | 45.0% | |
| AAGAGCAGTCTCCCATTCAA+TGG | - | chr3_1:6703304-6703323 | Msa0346330:intron | 45.0% | |
| TAAGGCTCACCTCCATTTCA+TGG | - | chr3_1:6703353-6703372 | Msa0346330:intron | 45.0% | |
| ACAACTCGGTCCTCATTTGT+GGG | - | chr3_1:6703462-6703481 | Msa0346330:intron | 45.0% | |
| ATACTCATGCCCCACAAATG+AGG | + | chr3_1:6703475-6703494 | None:intergenic | 45.0% | |
| ! | GTATCGACACTGACACATGT+TGG | + | chr3_1:6703595-6703614 | None:intergenic | 45.0% |
| TACCAACATGACTCGACACA+TGG | - | chr3_1:6703612-6703631 | Msa0346330:intron | 45.0% | |
| AACCATGTGTCGAGTCATGT+TGG | + | chr3_1:6703617-6703636 | None:intergenic | 45.0% | |
| CTACATGCTAGTGTCGTATC+TGG | - | chr3_1:6703679-6703698 | Msa0346330:CDS | 45.0% | |
| ! | GTTTCACTGGTTGATGCCAT+TGG | - | chr3_1:6703707-6703726 | Msa0346330:CDS | 45.0% |
| CTAACAGGCAAGGTTTCAAG+TGG | + | chr3_1:6704909-6704928 | None:intergenic | 45.0% | |
| ! | TCACCTTGTTATGGGGCTAA+TGG | - | chr3_1:6705449-6705468 | Msa0346330:CDS | 45.0% |
| !! | TCTTCGGGTTTTCTAGTGAC+GGG | - | chr3_1:6705720-6705739 | Msa0346330:intron | 45.0% |
| !! | ATGCTTTCGTCAAGGGTACT+AGG | + | chr3_1:6705827-6705846 | None:intergenic | 45.0% |
| CTGCTTCTATGCTTTCGTCA+AGG | + | chr3_1:6705835-6705854 | None:intergenic | 45.0% | |
| GCAGCAAGCTACCAATATGT+AGG | - | chr3_1:6705851-6705870 | Msa0346330:intron | 45.0% | |
| AGGATCCTGTGAAGAGTTTC+AGG | - | chr3_1:6705871-6705890 | Msa0346330:intron | 45.0% | |
| AGCCAATGCCTGATTCTTCA+TGG | - | chr3_1:6705894-6705913 | Msa0346330:intron | 45.0% | |
| AGAATCAAGCTGACATGACC+TGG | + | chr3_1:6705969-6705988 | None:intergenic | 45.0% | |
| TACTAGAGCTGGCAATGAGT+TGG | + | chr3_1:6706053-6706072 | None:intergenic | 45.0% | |
| ! | ATTGCCAGCTCTAGTAAGCA+AGG | - | chr3_1:6706057-6706076 | Msa0346330:intron | 45.0% |
| ! | GTGGATCAGTGTTTCTGTGA+AGG | + | chr3_1:6706258-6706277 | None:intergenic | 45.0% |
| CATATTGCGCCATTGTAGAG+TGG | + | chr3_1:6706277-6706296 | None:intergenic | 45.0% | |
| TCCAAAAACTCGTGGAGGAA+GGG | + | chr3_1:6706368-6706387 | None:intergenic | 45.0% | |
| CTGAGGAGAGTTGTCTACTA+TGG | + | chr3_1:6706582-6706601 | None:intergenic | 45.0% | |
| CATAGTAGACAACTCTCCTC+AGG | - | chr3_1:6706580-6706599 | Msa0346330:intron | 45.0% | |
| TCTGGAGAAACTCGTTGATG+TGG | - | chr3_1:6707062-6707081 | Msa0346330:intron | 45.0% | |
| TAATTCTATGAAGGGCGAGG+AGG | + | chr3_1:6707156-6707175 | None:intergenic | 45.0% | |
| GACTAATTCTATGAAGGGCG+AGG | + | chr3_1:6707159-6707178 | None:intergenic | 45.0% | |
| ATGTGCAAGACAACTAGGCA+GGG | + | chr3_1:6707224-6707243 | None:intergenic | 45.0% | |
| AATGTGCAAGACAACTAGGC+AGG | + | chr3_1:6707225-6707244 | None:intergenic | 45.0% | |
| !! | AATAATAATTTAAAAGAAAA+TGG | + | chr3_1:6703654-6703673 | None:intergenic | 5.0% |
| !!! | ATTTTCTTTTAAATTATTAT+TGG | - | chr3_1:6703653-6703672 | Msa0346330:intron | 5.0% |
| !! | TGAAATAAATTAATAAATTA+AGG | + | chr3_1:6706188-6706207 | None:intergenic | 5.0% |
| GGTTGGAGTAACCGATGCAA+TGG | - | chr3_1:6703014-6703033 | Msa0346330:three_prime_UTR | 50.0% | |
| GACAACTCGGTCCTCATTTG+TGG | - | chr3_1:6703461-6703480 | Msa0346330:intron | 50.0% | |
| CAACTCGGTCCTCATTTGTG+GGG | - | chr3_1:6703463-6703482 | Msa0346330:intron | 50.0% | |
| TTACTGTCATCCGCTCGATC+AGG | + | chr3_1:6705647-6705666 | None:intergenic | 50.0% | |
| TGGCTCCTGAAACTCTTCAC+AGG | + | chr3_1:6705879-6705898 | None:intergenic | 50.0% | |
| GTCTCCTTGCTTACTAGAGC+TGG | + | chr3_1:6706064-6706083 | None:intergenic | 50.0% | |
| CTCCAAAAACTCGTGGAGGA+AGG | + | chr3_1:6706369-6706388 | None:intergenic | 50.0% | |
| CTCTCTCCAAAAACTCGTGG+AGG | + | chr3_1:6706373-6706392 | None:intergenic | 50.0% | |
| GAAGACGGAGGAAATACCTG+AGG | + | chr3_1:6706599-6706618 | None:intergenic | 50.0% | |
| GACTAACCCACCTGATCGAG+CGG | - | chr3_1:6705634-6705653 | Msa0346330:intron | 55.0% | |
| TGTCATCCGCTCGATCAGGT+GGG | + | chr3_1:6705643-6705662 | None:intergenic | 55.0% | |
| ! | CAGTAAGTGGCTTGGCCTGA+TGG | + | chr3_1:6705934-6705953 | None:intergenic | 55.0% |
| ! | GCCCTTCCTCCACGAGTTTT+TGG | - | chr3_1:6706364-6706383 | Msa0346330:intron | 55.0% |
| CTGTCATCCGCTCGATCAGG+TGG | + | chr3_1:6705644-6705663 | None:intergenic | 60.0% | |
| CTATGAAGGGCGAGGAGGTC+CGG | + | chr3_1:6707151-6707170 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 6702823 | 6707450 | 6702823 | ID=Msa0346330;Name=Msa0346330 |
| chr3_1 | mRNA | 6702823 | 6707450 | 6702823 | ID=Msa0346330-mRNA-1;Parent=Msa0346330;Name=Msa0346330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=81|1|1|1|1|1|6|316|469 |
| chr3_1 | exon | 6702823 | 6703300 | 6702823 | ID=Msa0346330-mRNA-1:exon:1884;Parent=Msa0346330-mRNA-1 |
| chr3_1 | exon | 6703672 | 6704009 | 6703672 | ID=Msa0346330-mRNA-1:exon:1883;Parent=Msa0346330-mRNA-1 |
| chr3_1 | exon | 6704149 | 6704655 | 6704149 | ID=Msa0346330-mRNA-1:exon:1882;Parent=Msa0346330-mRNA-1 |
| chr3_1 | exon | 6705372 | 6705471 | 6705372 | ID=Msa0346330-mRNA-1:exon:1881;Parent=Msa0346330-mRNA-1 |
| chr3_1 | exon | 6706922 | 6707052 | 6706922 | ID=Msa0346330-mRNA-1:exon:1880;Parent=Msa0346330-mRNA-1 |
| chr3_1 | exon | 6707198 | 6707450 | 6707198 | ID=Msa0346330-mRNA-1:exon:1879;Parent=Msa0346330-mRNA-1 |
| chr3_1 | five_prime_UTR | 6707370 | 6707450 | 6707370 | ID=Msa0346330-mRNA-1:five_prime_utr;Parent=Msa0346330-mRNA-1 |
| chr3_1 | CDS | 6707198 | 6707369 | 6707198 | ID=Msa0346330-mRNA-1:cds;Parent=Msa0346330-mRNA-1 |
| chr3_1 | CDS | 6706922 | 6707052 | 6706922 | ID=Msa0346330-mRNA-1:cds;Parent=Msa0346330-mRNA-1 |
| chr3_1 | CDS | 6705372 | 6705471 | 6705372 | ID=Msa0346330-mRNA-1:cds;Parent=Msa0346330-mRNA-1 |
| chr3_1 | CDS | 6704149 | 6704655 | 6704149 | ID=Msa0346330-mRNA-1:cds;Parent=Msa0346330-mRNA-1 |
| chr3_1 | CDS | 6703672 | 6704009 | 6703672 | ID=Msa0346330-mRNA-1:cds;Parent=Msa0346330-mRNA-1 |
| chr3_1 | CDS | 6703139 | 6703300 | 6703139 | ID=Msa0346330-mRNA-1:cds;Parent=Msa0346330-mRNA-1 |
| chr3_1 | three_prime_UTR | 6702823 | 6703138 | 6702823 | ID=Msa0346330-mRNA-1:three_prime_utr;Parent=Msa0346330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
