Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488440 | XP_013458789.1 | 95.949 | 469 | 19 | 0 | 1 | 469 | 1 | 469 | 0.0 | 934 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488440 | sp|Q05D32|CTSL2_HUMAN | 51.471 | 204 | 93 | 5 | 265 | 464 | 256 | 457 | 6.00e-58 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488440 | A0A072UU09 | 95.949 | 469 | 19 | 0 | 1 | 469 | 1 | 469 | 0.0 | 934 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0346330 | Msa0488440 | 0.805235 | 1.472190e-49 | -8.615850e-47 |
| Msa0488440 | Msa0803640 | 0.806324 | 8.691776e-50 | -8.615850e-47 |
| Msa0488440 | Msa1218310 | -0.803866 | 2.841259e-49 | -8.615850e-47 |
| Msa0488440 | Msa1218350 | -0.801458 | 8.919614e-49 | -8.615850e-47 |
| Msa0488440 | Msa1251340 | 0.804358 | 2.244183e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488440 | MtrunA17_Chr3g0078241 | 95.949 | 469 | 19 | 0 | 1 | 469 | 1 | 469 | 0.0 | 934 |
| Msa0488440 | MtrunA17_Chr2g0303951 | 40.417 | 480 | 263 | 12 | 1 | 468 | 1 | 469 | 1.57e-100 | 309 |
| Msa0488440 | MtrunA17_Chr3g0122541 | 58.537 | 205 | 77 | 4 | 266 | 465 | 247 | 448 | 1.11e-61 | 208 |
| Msa0488440 | MtrunA17_Chr5g0419741 | 53.039 | 181 | 84 | 1 | 285 | 464 | 114 | 294 | 9.20e-58 | 192 |
| Msa0488440 | MtrunA17_Chr3g0122521 | 59.538 | 173 | 66 | 3 | 294 | 465 | 18 | 187 | 4.10e-54 | 180 |
| Msa0488440 | MtrunA17_Chr2g0284551 | 42.286 | 175 | 97 | 3 | 284 | 457 | 98 | 269 | 2.42e-28 | 114 |
| Msa0488440 | MtrunA17_Chr3g0113611 | 34.123 | 211 | 116 | 6 | 277 | 465 | 53 | 262 | 1.09e-21 | 94.7 |
| Msa0488440 | MtrunA17_Chr5g0437111 | 38.144 | 194 | 97 | 6 | 294 | 465 | 96 | 288 | 1.30e-21 | 95.1 |
| Msa0488440 | MtrunA17_Chr5g0446321 | 34.426 | 183 | 96 | 6 | 282 | 460 | 181 | 343 | 1.56e-19 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488440 | AT5G46410.2 | 37.988 | 487 | 252 | 19 | 1 | 468 | 1 | 456 | 1.50e-77 | 249 |
| Msa0488440 | AT5G46410.3 | 37.475 | 491 | 246 | 20 | 1 | 468 | 1 | 453 | 8.32e-77 | 247 |
| Msa0488440 | AT5G46410.1 | 37.475 | 491 | 246 | 20 | 1 | 468 | 1 | 453 | 8.32e-77 | 247 |
| Msa0488440 | AT4G18140.4 | 56.951 | 223 | 91 | 5 | 250 | 468 | 220 | 441 | 3.38e-75 | 243 |
| Msa0488440 | AT4G18140.6 | 56.951 | 223 | 91 | 5 | 250 | 468 | 220 | 441 | 3.38e-75 | 243 |
| Msa0488440 | AT4G18140.5 | 56.951 | 223 | 91 | 5 | 250 | 468 | 220 | 441 | 3.38e-75 | 243 |
| Msa0488440 | AT4G18140.1 | 56.561 | 221 | 91 | 5 | 250 | 466 | 220 | 439 | 4.92e-74 | 240 |
| Msa0488440 | AT4G18140.2 | 56.561 | 221 | 91 | 5 | 250 | 466 | 220 | 439 | 4.92e-74 | 240 |
| Msa0488440 | AT4G18140.3 | 56.818 | 220 | 90 | 5 | 250 | 465 | 220 | 438 | 8.93e-74 | 239 |
| Msa0488440 | AT5G11860.3 | 61.749 | 183 | 68 | 2 | 283 | 464 | 99 | 280 | 3.13e-72 | 231 |
| Msa0488440 | AT5G11860.5 | 61.749 | 183 | 68 | 2 | 283 | 464 | 99 | 280 | 3.13e-72 | 231 |
| Msa0488440 | AT5G11860.1 | 61.749 | 183 | 68 | 2 | 283 | 464 | 99 | 280 | 3.13e-72 | 231 |
| Msa0488440 | AT5G11860.4 | 61.749 | 183 | 68 | 2 | 283 | 464 | 99 | 280 | 3.13e-72 | 231 |
| Msa0488440 | AT5G11860.2 | 61.749 | 183 | 68 | 2 | 283 | 464 | 99 | 280 | 3.13e-72 | 231 |
| Msa0488440 | AT1G29780.1 | 40.698 | 172 | 99 | 3 | 297 | 466 | 51 | 221 | 1.04e-34 | 129 |
| Msa0488440 | AT5G45700.1 | 42.262 | 168 | 95 | 2 | 297 | 462 | 99 | 266 | 1.12e-31 | 122 |
| Msa0488440 | AT1G29770.1 | 39.785 | 186 | 105 | 5 | 285 | 467 | 95 | 276 | 2.85e-31 | 122 |
| Msa0488440 | AT3G55960.1 | 37.186 | 199 | 98 | 9 | 291 | 465 | 93 | 288 | 7.29e-22 | 96.3 |
| Msa0488440 | AT1G55900.2 | 31.638 | 177 | 101 | 5 | 294 | 467 | 188 | 347 | 8.76e-16 | 79.3 |
| Msa0488440 | AT1G55900.1 | 31.638 | 177 | 101 | 5 | 294 | 467 | 188 | 347 | 9.42e-16 | 79.3 |
| Msa0488440 | AT1G43610.1 | 30.000 | 190 | 95 | 6 | 290 | 448 | 47 | 229 | 8.46e-15 | 74.7 |
| Msa0488440 | AT1G43600.1 | 32.877 | 146 | 80 | 4 | 298 | 431 | 21 | 160 | 1.11e-13 | 70.9 |
| Msa0488440 | AT5G54210.1 | 27.619 | 210 | 117 | 7 | 238 | 431 | 41 | 231 | 2.54e-13 | 71.2 |
| Msa0488440 | AT1G20320.1 | 32.911 | 158 | 81 | 7 | 294 | 436 | 75 | 222 | 2.47e-11 | 65.5 |
| Msa0488440 | AT3G17550.1 | 30.000 | 150 | 86 | 4 | 294 | 431 | 84 | 226 | 6.84e-11 | 63.5 |
Find 103 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCAGGTATTTCGAAATT+TGG | 0.119769 | 3_4:-8188992 | None:intergenic |
| TTAAGATCATTTCAACTTAT+TGG | 0.165953 | 3_4:-8186160 | None:intergenic |
| ACCAAAGATTTGACAGTTCT+TGG | 0.197757 | 3_4:+8189857 | Msa0488440:CDS |
| ACAGAGGCTGTGTTAATTAA+TGG | 0.241927 | 3_4:+8190716 | Msa0488440:three_prime_UTR |
| TTCAGAAATAGCTATGATTC+TGG | 0.252842 | 3_4:+8190589 | Msa0488440:three_prime_UTR |
| AGGATCCTGTGAAGAGTTTC+AGG | 0.253011 | 3_4:+8189192 | Msa0488440:CDS |
| TTTGGTCTCTGCAGTTAATA+AGG | 0.260231 | 3_4:+8188925 | Msa0488440:intron |
| ATCAACGAGTTTCTCCAAAA+AGG | 0.304200 | 3_4:-8190379 | None:intergenic |
| AGAGATATTCATAAGCTTCT+TGG | 0.304963 | 3_4:+8189333 | Msa0488440:CDS |
| TCATGCCAAACATATCTTAA+TGG | 0.308449 | 3_4:+8186355 | Msa0488440:CDS |
| TCAAATTTCTCTGCGATAAT+CGG | 0.313863 | 3_4:-8190417 | None:intergenic |
| TGTTACCCTTGTTCTTGATT+TGG | 0.319591 | 3_4:+8189420 | Msa0488440:CDS |
| ACACTGTCTATGTGCGAAAA+AGG | 0.330339 | 3_4:+8189663 | Msa0488440:CDS |
| TACTCCTTGTCAAGTAAAAC+TGG | 0.332299 | 3_4:-8189641 | None:intergenic |
| TTTGCAAGCTGTAGGAGATT+TGG | 0.339006 | 3_4:-8186230 | None:intergenic |
| GGAAGATCGTATAACAAATT+TGG | 0.344441 | 3_4:-8189124 | None:intergenic |
| TCCAAGAACTGTCAAATCTT+TGG | 0.348444 | 3_4:-8189858 | None:intergenic |
| CATTGTAACTTATTTGAAAC+AGG | 0.356700 | 3_4:+8188184 | Msa0488440:CDS |
| ATTGATGCCAGCAGTTAAAA+TGG | 0.362284 | 3_4:+8186204 | Msa0488440:exon |
| TTTCTTCATCACATGACATT+TGG | 0.375096 | 3_4:-8186574 | None:intergenic |
| TAAGCAAGGAGACAAGTAAA+AGG | 0.380226 | 3_4:+8189392 | Msa0488440:CDS |
| TTAACTGCTGGCATCAATGC+TGG | 0.393130 | 3_4:-8186199 | None:intergenic |
| TACCACCATTAAGATATGTT+TGG | 0.394938 | 3_4:-8186360 | None:intergenic |
| TATGTGGATGAAGCATTCTT+CGG | 0.396115 | 3_4:+8189025 | Msa0488440:CDS |
| ACATAGTAGTCTAACATATC+AGG | 0.399328 | 3_4:-8189007 | None:intergenic |
| ATGTGGATGAAGCATTCTTC+GGG | 0.403727 | 3_4:+8189026 | Msa0488440:CDS |
| TCAGAAATAGCTATGATTCT+GGG | 0.405810 | 3_4:+8190590 | Msa0488440:three_prime_UTR |
| CAGAGGCTGTGTTAATTAAT+GGG | 0.406909 | 3_4:+8190717 | Msa0488440:three_prime_UTR |
| TCATCAAACCAACTCTCAAT+AGG | 0.412269 | 3_4:-8190324 | None:intergenic |
| ATGCTTTCGTCAAGGGTACT+AGG | 0.416784 | 3_4:-8189145 | None:intergenic |
| AGCCAATGCCTGATTCTTCA+TGG | 0.422624 | 3_4:+8189215 | Msa0488440:CDS |
| GTTCAATGTCATTTGCCATC+AGG | 0.445330 | 3_4:+8189237 | Msa0488440:CDS |
| AGCAAATTCAAGATCGGAAA+AGG | 0.445909 | 3_4:-8189098 | None:intergenic |
| CTGAGGAGAGTTGTCTACTA+TGG | 0.448136 | 3_4:-8189900 | None:intergenic |
| AAGTTACAATGGGCATCATC+AGG | 0.461348 | 3_4:-8188172 | None:intergenic |
| TGCTTCTATGCTTTCGTCAA+GGG | 0.461989 | 3_4:-8189152 | None:intergenic |
| AAGAAGCTTATGAATATCTC+TGG | 0.466228 | 3_4:-8189331 | None:intergenic |
| CTAATTCTATGAAGGGCAAA+AGG | 0.468356 | 3_4:-8190477 | None:intergenic |
| GCATCATGTTCTTCAGTAAG+TGG | 0.473251 | 3_4:-8189265 | None:intergenic |
| CTTCACAGGATCCTACATAT+TGG | 0.474904 | 3_4:-8189183 | None:intergenic |
| CTGCTTCTATGCTTTCGTCA+AGG | 0.478495 | 3_4:-8189153 | None:intergenic |
| TACTAGAGCTGGCAATGAGT+TGG | 0.481285 | 3_4:-8189371 | None:intergenic |
| CAGTAAGTGGCTTGGCCTGA+TGG | 0.481696 | 3_4:-8189252 | None:intergenic |
| GTCTCCTTGCTTACTAGAGC+TGG | 0.484300 | 3_4:-8189382 | None:intergenic |
| CTGTCATCCGCTCGATCAGG+TGG | 0.487999 | 3_4:-8188962 | None:intergenic |
| ACCCTTGTTCTTGATTTGGA+TGG | 0.489792 | 3_4:+8189424 | Msa0488440:CDS |
| TTATCTGCACAACCATTGAA+TGG | 0.493843 | 3_4:-8186620 | None:intergenic |
| TTACTGTCATCCGCTCGATC+AGG | 0.495088 | 3_4:-8188965 | None:intergenic |
| GACATTGCAGAAACAGAAAC+CGG | 0.496076 | 3_4:-8188115 | None:intergenic |
| TGTTTCAAATAAGTTACAAT+GGG | 0.499624 | 3_4:-8188182 | None:intergenic |
| TAACTGCTGGCATCAATGCT+GGG | 0.500702 | 3_4:-8186198 | None:intergenic |
| TCAGACTGCAAGTTAACAAT+GGG | 0.500724 | 3_4:+8190298 | Msa0488440:CDS |
| ACATTGAACCATGAAGAATC+AGG | 0.505703 | 3_4:-8189223 | None:intergenic |
| ATCTAAATCTTCCATTGCAT+CGG | 0.506886 | 3_4:-8186329 | None:intergenic |
| GTAATCGACTAATTCTATGA+AGG | 0.512194 | 3_4:-8190485 | None:intergenic |
| GATATTCATAAGCTTCTTGG+AGG | 0.517387 | 3_4:+8189336 | Msa0488440:CDS |
| TGCAGATAAGATAGTAGAAA+CGG | 0.517652 | 3_4:+8186634 | Msa0488440:CDS |
| TAGTCGAGACCATCATCAAA+TGG | 0.518538 | 3_4:-8189070 | None:intergenic |
| AGAATCAAGCTGACATGACC+TGG | 0.521297 | 3_4:-8189287 | None:intergenic |
| AATGTGCAAGACAACTAGGC+AGG | 0.526575 | 3_4:-8190545 | None:intergenic |
| ATGGGATTCCTATTGAGAGT+TGG | 0.527202 | 3_4:+8190316 | Msa0488440:CDS |
| TTCTTACAGGTTAACTGCAA+AGG | 0.528796 | 3_4:+8186129 | Msa0488440:five_prime_UTR |
| TATCTGCACAACCATTGAAT+GGG | 0.529518 | 3_4:-8186619 | None:intergenic |
| CTTGATAGATGCACGAATCT+CGG | 0.530294 | 3_4:-8189823 | None:intergenic |
| CATAGTAGACAACTCTCCTC+AGG | 0.530342 | 3_4:+8189901 | Msa0488440:CDS |
| ATGTTCTTCAGTAAGTGGCT+TGG | 0.530771 | 3_4:-8189260 | None:intergenic |
| GAAATCAAAGCAGAATCAGA+TGG | 0.530841 | 3_4:-8190348 | None:intergenic |
| AAAAGACCATGTTCGATGGT+TGG | 0.536595 | 3_4:+8186301 | Msa0488440:CDS |
| AACCATGAAGAATCAGGCAT+TGG | 0.542330 | 3_4:-8189217 | None:intergenic |
| TGGTCCAGCAAATTCAAGAT+CGG | 0.545038 | 3_4:-8189104 | None:intergenic |
| AAGAGCAGTCTCCCATTCAA+TGG | 0.555275 | 3_4:+8186608 | Msa0488440:CDS |
| CTAAAATGTGCAAGACAACT+AGG | 0.557100 | 3_4:-8190549 | None:intergenic |
| GCAGCAAGCTACCAATATGT+AGG | 0.557348 | 3_4:+8189172 | Msa0488440:CDS |
| TGTAAATAAAGAATATTCAA+AGG | 0.559231 | 3_4:+8186532 | Msa0488440:CDS |
| TGGCTCCTGAAACTCTTCAC+AGG | 0.559633 | 3_4:-8189197 | None:intergenic |
| CTGTTTCAAATAAGTTACAA+TGG | 0.561448 | 3_4:-8188183 | None:intergenic |
| GGGATCAATCCATTTGATGA+TGG | 0.567091 | 3_4:+8189061 | Msa0488440:CDS |
| ATCTAAAAGACCATGTTCGA+TGG | 0.567201 | 3_4:+8186297 | Msa0488440:CDS |
| TTTGGAGAAACTCGTTGATG+TGG | 0.569892 | 3_4:+8190383 | Msa0488440:CDS |
| TGTGATGAAGAAACAATTGT+GGG | 0.571140 | 3_4:+8186584 | Msa0488440:CDS |
| TACCATCCAAATCAAGAACA+AGG | 0.575097 | 3_4:-8189426 | None:intergenic |
| CATATTTCGCCATTGTAGAG+TGG | 0.577483 | 3_4:-8189595 | None:intergenic |
| TAATCGACTAATTCTATGAA+GGG | 0.579853 | 3_4:-8190484 | None:intergenic |
| GGTTGGAGTAACCGATGCAA+TGG | 0.582451 | 3_4:+8186318 | Msa0488440:CDS |
| CAGAAATAGCTATGATTCTG+GGG | 0.589495 | 3_4:+8190591 | Msa0488440:three_prime_UTR |
| TTCAGACTGCAAGTTAACAA+TGG | 0.590311 | 3_4:+8190297 | Msa0488440:CDS |
| ATTGCCAGCTCTAGTAAGCA+AGG | 0.597516 | 3_4:+8189378 | Msa0488440:CDS |
| ATGTGCAAGACAACTAGGCA+GGG | 0.600660 | 3_4:-8190544 | None:intergenic |
| GACTAACCCACCTGATCGAG+CGG | 0.602487 | 3_4:+8188955 | Msa0488440:CDS |
| GATTCGTGCATCTATCAAGA+TGG | 0.603464 | 3_4:+8189827 | Msa0488440:CDS |
| GTTACTCCAACCATCGAACA+TGG | 0.611855 | 3_4:-8186307 | None:intergenic |
| TTACTGAAGAACATGATGCC+AGG | 0.616908 | 3_4:+8189269 | Msa0488440:CDS |
| TGCCAAACATATCTTAATGG+TGG | 0.628746 | 3_4:+8186358 | Msa0488440:CDS |
| ATGTGATGAAGAAACAATTG+TGG | 0.631533 | 3_4:+8186583 | Msa0488440:CDS |
| TTTGACTTCTGAGACACATG+AGG | 0.634096 | 3_4:-8186268 | None:intergenic |
| AACACTGATCCACTCTACAA+TGG | 0.642575 | 3_4:+8189586 | Msa0488440:CDS |
| ATTCTATGAAGGGCAAAAGG+AGG | 0.645682 | 3_4:-8190474 | None:intergenic |
| TGATATGTTAGACTACTATG+TGG | 0.652262 | 3_4:+8189009 | Msa0488440:CDS |
| ACCATCCAAATCAAGAACAA+GGG | 0.657637 | 3_4:-8189425 | None:intergenic |
| TGTCATCCGCTCGATCAGGT+GGG | 0.666821 | 3_4:-8188961 | None:intergenic |
| GATGCCAGCAGTTAAAATGG+TGG | 0.684628 | 3_4:+8186207 | Msa0488440:exon |
| CTTACTGAACTACAGTACAG+AGG | 0.727146 | 3_4:+8190700 | Msa0488440:three_prime_UTR |
| GTGATGAAGAAACAATTGTG+GGG | 0.742374 | 3_4:+8186585 | Msa0488440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATTTTATTTTTTA+TGG | + | chr3_4:8188080-8188099 | Msa0488440:intron | 0.0% |
| !!! | TTTTTTTTTTTTTTTTTTTT+TGG | + | chr3_4:8188240-8188259 | Msa0488440:intron | 0.0% |
| !!! | CAAAATTATTTTATACATTT+TGG | - | chr3_4:8189548-8189567 | None:intergenic | 10.0% |
| !!! | AATAATTTTATTTCAAGTTT+TGG | + | chr3_4:8190654-8190673 | Msa0488440:three_prime_UTR | 10.0% |
| !! | TGTAAATAAAGAATATTCAA+AGG | + | chr3_4:8186532-8186551 | Msa0488440:CDS | 15.0% |
| !!! | TTTATTTTATTTTTTATGGC+AGG | + | chr3_4:8188084-8188103 | Msa0488440:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGGTG+TGG | + | chr3_4:8188257-8188276 | Msa0488440:intron | 15.0% |
| !!! | ATCAAACATTTATATTGATT+AGG | - | chr3_4:8188805-8188824 | None:intergenic | 15.0% |
| !! | TAATCAATATAAATGTTTGA+TGG | + | chr3_4:8188804-8188823 | Msa0488440:intron | 15.0% |
| !! | TTATAATGATAAAAACACAT+CGG | - | chr3_4:8189473-8189492 | None:intergenic | 15.0% |
| !! | ATTTCAATATTATTTACCAT+AGG | - | chr3_4:8190251-8190270 | None:intergenic | 15.0% |
| !! | TTAAGATCATTTCAACTTAT+TGG | - | chr3_4:8186163-8186182 | None:intergenic | 20.0% |
| !! | AACATAATTTATACAAAGAC+AGG | - | chr3_4:8186702-8186721 | None:intergenic | 20.0% |
| !! | ATATATATAACGAAACCTAA+TGG | - | chr3_4:8187379-8187398 | None:intergenic | 20.0% |
| !!! | ATTTGTTATTCTAACAAAGA+TGG | + | chr3_4:8187304-8187323 | Msa0488440:intron | 20.0% |
| !! | ATATATATAACGAAACCTAA+TGG | + | chr3_4:8187379-8187398 | Msa0488440:intron | 20.0% |
| !! | GATGTTAGATAATAAAGTAT+TGG | - | chr3_4:8187443-8187462 | None:intergenic | 20.0% |
| !! | CAATCATTATATAGAATCTA+AGG | - | chr3_4:8187666-8187685 | None:intergenic | 20.0% |
| !! | ACACACACAAAAATATAATA+AGG | - | chr3_4:8187856-8187875 | None:intergenic | 20.0% |
| !! | TGTTTCAAATAAGTTACAAT+GGG | - | chr3_4:8188185-8188204 | None:intergenic | 20.0% |
| !! | AAAAAAAACAGTATTCTAAC+AGG | - | chr3_4:8188228-8188247 | None:intergenic | 20.0% |
| !! | AAATTATCAAGACGAATAAA+GGG | - | chr3_4:8188585-8188604 | None:intergenic | 20.0% |
| !! | TGTACAATAGTGAAAATAAT+AGG | - | chr3_4:8188879-8188898 | None:intergenic | 20.0% |
| !!! | TTATACATTTTGGAATAAGA+AGG | - | chr3_4:8189538-8189557 | None:intergenic | 20.0% |
| !!! | AGATATAATGCCAAATATTT+TGG | - | chr3_4:8189988-8190007 | None:intergenic | 20.0% |
| !! | GCATAATATAAATGTATCAT+TGG | + | chr3_4:8190134-8190153 | Msa0488440:intron | 20.0% |
| !!! | AATTAGTTTTGCATATATTC+TGG | + | chr3_4:8190450-8190469 | Msa0488440:exon | 20.0% |
| !!! | TGAAGGCATTTATTCTTTTT+GGG | - | chr3_4:8186414-8186433 | None:intergenic | 25.0% |
| !!! | TTGAAGGCATTTATTCTTTT+TGG | - | chr3_4:8186415-8186434 | None:intergenic | 25.0% |
| ! | TATGAATAAGATCCATGAAA+TGG | - | chr3_4:8186672-8186691 | None:intergenic | 25.0% |
| ! | GAAAAGAAATATGCAATAGT+TGG | + | chr3_4:8186806-8186825 | Msa0488440:intron | 25.0% |
| ! | GATGTTAGATGATAAAGTAT+TGG | + | chr3_4:8187152-8187171 | Msa0488440:intron | 25.0% |
| !!! | AAGTATTGGACTTATGTTAT+TGG | + | chr3_4:8187166-8187185 | Msa0488440:intron | 25.0% |
| !! | AGTATTGGACTTATGTTATT+GGG | + | chr3_4:8187167-8187186 | Msa0488440:intron | 25.0% |
| ! | AACAAATAGACTAACAAAGA+CGG | - | chr3_4:8187291-8187310 | None:intergenic | 25.0% |
| !! | AGTATTGGACTTAAGTTATT+GGG | - | chr3_4:8187428-8187447 | None:intergenic | 25.0% |
| !!! | AAGTATTGGACTTAAGTTAT+TGG | - | chr3_4:8187429-8187448 | None:intergenic | 25.0% |
| !! | CATAAATAACTTGCATCAAA+TGG | - | chr3_4:8187570-8187589 | None:intergenic | 25.0% |
| !! | TATATAGAATCTAAGGTTAC+AGG | - | chr3_4:8187659-8187678 | None:intergenic | 25.0% |
| !!! | TACATTCTTGTCGTTTTATA+TGG | + | chr3_4:8187797-8187816 | Msa0488440:intron | 25.0% |
| ! | TTGAGAATATATGAACAAAG+TGG | - | chr3_4:8188008-8188027 | None:intergenic | 25.0% |
| !!! | CATTGTTGTCTTATTTTAAC+AGG | + | chr3_4:8188149-8188168 | Msa0488440:CDS | 25.0% |
| ! | CTGTTTCAAATAAGTTACAA+TGG | - | chr3_4:8188186-8188205 | None:intergenic | 25.0% |
| !! | CATTGTAACTTATTTGAAAC+AGG | + | chr3_4:8188184-8188203 | Msa0488440:CDS | 25.0% |
| !! | AATAAGAAGCATATAAGTTG+AGG | + | chr3_4:8188309-8188328 | Msa0488440:intron | 25.0% |
| !!! | TTTTGGTTTAACTAAGGATT+TGG | - | chr3_4:8188340-8188359 | None:intergenic | 25.0% |
| ! | AAATCCTTAGTTAAACCAAA+AGG | + | chr3_4:8188339-8188358 | Msa0488440:intron | 25.0% |
| ! | TTTGTAAGAGACAATTTCAT+TGG | + | chr3_4:8188386-8188405 | Msa0488440:intron | 25.0% |
| ! | ATAGTAAATATGTGGATTTG+TGG | - | chr3_4:8188487-8188506 | None:intergenic | 25.0% |
| ! | ATGAGTATTATTTGCATCTT+TGG | + | chr3_4:8188524-8188543 | Msa0488440:intron | 25.0% |
| ! | CAAATTATCAAGACGAATAA+AGG | - | chr3_4:8188586-8188605 | None:intergenic | 25.0% |
| !! | CTTTATTCGTCTTGATAATT+TGG | + | chr3_4:8188584-8188603 | Msa0488440:intron | 25.0% |
| !! | TTTTGTATAAGAAAGACTGA+AGG | + | chr3_4:8188614-8188633 | Msa0488440:intron | 25.0% |
| !!! | AATTTTAGTCACCTTGTTAT+GGG | + | chr3_4:8188762-8188781 | Msa0488440:intron | 25.0% |
| !! | TACATTAGTTTAATTCTAGC+TGG | + | chr3_4:8188828-8188847 | Msa0488440:intron | 25.0% |
| ! | ATATCAGGTATTTCGAAATT+TGG | - | chr3_4:8188995-8189014 | None:intergenic | 25.0% |
| ! | AGCAAGTAAAAAGATTTATG+CGG | + | chr3_4:8189745-8189764 | Msa0488440:CDS | 25.0% |
| ! | AACCTATTATAACATGAAGA+CGG | - | chr3_4:8189935-8189954 | None:intergenic | 25.0% |
| ! | CATTCATGATCCAAAATATT+TGG | + | chr3_4:8189975-8189994 | Msa0488440:intron | 25.0% |
| ! | GAAAATTAGTCATCTAAATG+AGG | - | chr3_4:8190069-8190088 | None:intergenic | 25.0% |
| ! | TATAGGAGATTCATGAAAAT+TGG | - | chr3_4:8190095-8190114 | None:intergenic | 25.0% |
| ! | TAAAATTGCGAATGATGTAT+AGG | - | chr3_4:8190112-8190131 | None:intergenic | 25.0% |
| ! | TCATAATGTAAATGCATCAT+TGG | + | chr3_4:8190179-8190198 | Msa0488440:intron | 25.0% |
| !! | ATAGTCCTTTTATATTTGTC+TGG | + | chr3_4:8190211-8190230 | Msa0488440:intron | 25.0% |
| ! | TTACCATAGGCAATAAATAA+AGG | - | chr3_4:8190238-8190257 | None:intergenic | 25.0% |
| ! | TAATCGACTAATTCTATGAA+GGG | - | chr3_4:8190487-8190506 | None:intergenic | 25.0% |
| ATCTAAATCTTCCATTGCAT+CGG | - | chr3_4:8186332-8186351 | None:intergenic | 30.0% | |
| TCATGCCAAACATATCTTAA+TGG | + | chr3_4:8186355-8186374 | Msa0488440:CDS | 30.0% | |
| TACCACCATTAAGATATGTT+TGG | - | chr3_4:8186363-8186382 | None:intergenic | 30.0% | |
| AGAATAAATGCCTTCAATCT+TGG | + | chr3_4:8186418-8186437 | Msa0488440:intron | 30.0% | |
| AGACATGTGTAACTAATAAG+TGG | - | chr3_4:8186498-8186517 | None:intergenic | 30.0% | |
| TTTCTTCATCACATGACATT+TGG | - | chr3_4:8186577-8186596 | None:intergenic | 30.0% | |
| ATGTGATGAAGAAACAATTG+TGG | + | chr3_4:8186583-8186602 | Msa0488440:CDS | 30.0% | |
| TGTGATGAAGAAACAATTGT+GGG | + | chr3_4:8186584-8186603 | Msa0488440:CDS | 30.0% | |
| TGCAGATAAGATAGTAGAAA+CGG | + | chr3_4:8186634-8186653 | Msa0488440:CDS | 30.0% | |
| ATAAGATAGTAGAAACGGTA+AGG | + | chr3_4:8186639-8186658 | Msa0488440:intron | 30.0% | |
| AACGTCAAATTCAAAACCAA+TGG | - | chr3_4:8187030-8187049 | None:intergenic | 30.0% | |
| !!! | ATTGGTTTTGAATTTGACGT+TGG | + | chr3_4:8187029-8187048 | Msa0488440:intron | 30.0% |
| !!! | TTGGTTTTGAATTTGACGTT+GGG | + | chr3_4:8187030-8187049 | Msa0488440:intron | 30.0% |
| TTAGTAAGTTAGAGTCCATT+AGG | + | chr3_4:8187198-8187217 | Msa0488440:intron | 30.0% | |
| CTCTCATAATGTTAAGCTAT+TGG | - | chr3_4:8187348-8187367 | None:intergenic | 30.0% | |
| CAATAGCTTAACATTATGAG+AGG | + | chr3_4:8187346-8187365 | Msa0488440:intron | 30.0% | |
| TTAGTAAGTTAGAGTCCATT+AGG | - | chr3_4:8187198-8187217 | None:intergenic | 30.0% | |
| TTGACTCATTGTGAGTTTAA+GGG | - | chr3_4:8187468-8187487 | None:intergenic | 30.0% | |
| ! | CTGCTTGATATATAGTTTTC+TGG | + | chr3_4:8187617-8187636 | Msa0488440:intron | 30.0% |
| !!! | CTTGTCGTTTTATATGGTTT+AGG | + | chr3_4:8187803-8187822 | Msa0488440:intron | 30.0% |
| !! | ACTTCTTTGATTTGTGAGTT+AGG | + | chr3_4:8187938-8187957 | Msa0488440:intron | 30.0% |
| !!! | CTTACCTTTTGGTTTAACTA+AGG | - | chr3_4:8188346-8188365 | None:intergenic | 30.0% |
| ATTGTCTCTTACAAAATGAC+TGG | - | chr3_4:8188381-8188400 | None:intergenic | 30.0% | |
| ! | CATTGGTGATCATTATAAGA+CGG | + | chr3_4:8188403-8188422 | Msa0488440:intron | 30.0% |
| CCACTTACATAGTAAATATG+TGG | - | chr3_4:8188495-8188514 | None:intergenic | 30.0% | |
| CCACATATTTACTATGTAAG+TGG | + | chr3_4:8188492-8188511 | Msa0488440:intron | 30.0% | |
| ! | GATATACTTATGTCCAGTTT+TGG | - | chr3_4:8188667-8188686 | None:intergenic | 30.0% |
| !! | TCAAGTTCTAAATGCATGTA+AGG | - | chr3_4:8188734-8188753 | None:intergenic | 30.0% |
| !! | CAATTTTAGTCACCTTGTTA+TGG | + | chr3_4:8188761-8188780 | Msa0488440:intron | 30.0% |
| !! | ATTTTAGTCACCTTGTTATG+GGG | + | chr3_4:8188763-8188782 | Msa0488440:intron | 30.0% |
| ! | TTAGTTTAATTCTAGCTGGT+TGG | + | chr3_4:8188832-8188851 | Msa0488440:intron | 30.0% |
| TGTAACAAGTGTGTAAACTT+TGG | + | chr3_4:8188907-8188926 | Msa0488440:intron | 30.0% | |
| ACATAGTAGTCTAACATATC+AGG | - | chr3_4:8189010-8189029 | None:intergenic | 30.0% | |
| TGATATGTTAGACTACTATG+TGG | + | chr3_4:8189009-8189028 | Msa0488440:CDS | 30.0% | |
| GGAAGATCGTATAACAAATT+TGG | - | chr3_4:8189127-8189146 | None:intergenic | 30.0% | |
| AAGAAGCTTATGAATATCTC+TGG | - | chr3_4:8189334-8189353 | None:intergenic | 30.0% | |
| AGAGATATTCATAAGCTTCT+TGG | + | chr3_4:8189333-8189352 | Msa0488440:CDS | 30.0% | |
| ! | AATTCCAGTTTTACTTGACA+AGG | + | chr3_4:8189637-8189656 | Msa0488440:CDS | 30.0% |
| GCATTTACATTATGATGTGA+AGG | - | chr3_4:8190174-8190193 | None:intergenic | 30.0% | |
| AAGGACCAGACAAATATAAA+AGG | - | chr3_4:8190219-8190238 | None:intergenic | 30.0% | |
| ! | TCAAACTTTTGTTCATGTTC+AGG | + | chr3_4:8190272-8190291 | Msa0488440:intron | 30.0% |
| ! | GATTTCTTTACTTCCCTTTT+TGG | + | chr3_4:8190365-8190384 | Msa0488440:CDS | 30.0% |
| TCAAATTTCTCTGCGATAAT+CGG | - | chr3_4:8190420-8190439 | None:intergenic | 30.0% | |
| GTAATCGACTAATTCTATGA+AGG | - | chr3_4:8190488-8190507 | None:intergenic | 30.0% | |
| TTCAGAAATAGCTATGATTC+TGG | + | chr3_4:8190589-8190608 | Msa0488440:three_prime_UTR | 30.0% | |
| TCAGAAATAGCTATGATTCT+GGG | + | chr3_4:8190590-8190609 | Msa0488440:three_prime_UTR | 30.0% | |
| TTCTTACAGGTTAACTGCAA+AGG | + | chr3_4:8186129-8186148 | Msa0488440:five_prime_UTR | 35.0% | |
| ATTGATGCCAGCAGTTAAAA+TGG | + | chr3_4:8186204-8186223 | Msa0488440:exon | 35.0% | |
| CTACAGCTTGCAAAAAAGAT+GGG | + | chr3_4:8186239-8186258 | Msa0488440:CDS | 35.0% | |
| ATCTAAAAGACCATGTTCGA+TGG | + | chr3_4:8186297-8186316 | Msa0488440:CDS | 35.0% | |
| TGCCAAACATATCTTAATGG+TGG | + | chr3_4:8186358-8186377 | Msa0488440:CDS | 35.0% | |
| ! | TTTTCCAATGCCAAGATTGA+AGG | - | chr3_4:8186431-8186450 | None:intergenic | 35.0% |
| GTGATGAAGAAACAATTGTG+GGG | + | chr3_4:8186585-8186604 | Msa0488440:CDS | 35.0% | |
| TATCTGCACAACCATTGAAT+GGG | - | chr3_4:8186622-8186641 | None:intergenic | 35.0% | |
| TTATCTGCACAACCATTGAA+TGG | - | chr3_4:8186623-8186642 | None:intergenic | 35.0% | |
| GAATAAGATCCATGAAATGG+AGG | - | chr3_4:8186669-8186688 | None:intergenic | 35.0% | |
| ! | GATTTTTCTGAGTGACAACT+CGG | + | chr3_4:8186752-8186771 | Msa0488440:intron | 35.0% |
| ! | TGGTGACAACAATTTTGCTA+TGG | + | chr3_4:8186826-8186845 | Msa0488440:intron | 35.0% |
| TTGACTCATTGTGAGTTTGA+GGG | + | chr3_4:8187127-8187146 | Msa0488440:intron | 35.0% | |
| CAATAGCTTAACATTACGAG+AGG | - | chr3_4:8187249-8187268 | None:intergenic | 35.0% | |
| CTCTCGTAATGTTAAGCTAT+TGG | + | chr3_4:8187247-8187266 | Msa0488440:intron | 35.0% | |
| ! | GTTGACTCATTGTGAGTTTA+AGG | - | chr3_4:8187469-8187488 | None:intergenic | 35.0% |
| ! | TTTATGGCAGGATTCTTTTC+CGG | + | chr3_4:8188096-8188115 | Msa0488440:intron | 35.0% |
| AAACAGTATTCTAACAGGCA+AGG | - | chr3_4:8188223-8188242 | None:intergenic | 35.0% | |
| ! | GGTAGTATCTTCTTACCTTT+TGG | - | chr3_4:8188357-8188376 | None:intergenic | 35.0% |
| !!! | AGTTTTGGTGCTTTGATCAA+TGG | - | chr3_4:8188652-8188671 | None:intergenic | 35.0% |
| ! | ATTGATCAAAGCACCAAAAC+TGG | + | chr3_4:8188651-8188670 | Msa0488440:intron | 35.0% |
| ! | GTTCTAAATGCATGTAAGGA+TGG | - | chr3_4:8188730-8188749 | None:intergenic | 35.0% |
| TTTGGTCTCTGCAGTTAATA+AGG | + | chr3_4:8188925-8188944 | Msa0488440:intron | 35.0% | |
| ! | TATGTGGATGAAGCATTCTT+CGG | + | chr3_4:8189025-8189044 | Msa0488440:CDS | 35.0% |
| AGCAAATTCAAGATCGGAAA+AGG | - | chr3_4:8189101-8189120 | None:intergenic | 35.0% | |
| ! | TTTTCCGATCTTGAATTTGC+TGG | + | chr3_4:8189100-8189119 | Msa0488440:CDS | 35.0% |
| ACATTGAACCATGAAGAATC+AGG | - | chr3_4:8189226-8189245 | None:intergenic | 35.0% | |
| GATATTCATAAGCTTCTTGG+AGG | + | chr3_4:8189336-8189355 | Msa0488440:CDS | 35.0% | |
| TAAGCAAGGAGACAAGTAAA+AGG | + | chr3_4:8189392-8189411 | Msa0488440:CDS | 35.0% | |
| TGTTACCCTTGTTCTTGATT+TGG | + | chr3_4:8189420-8189439 | Msa0488440:CDS | 35.0% | |
| ACCATCCAAATCAAGAACAA+GGG | - | chr3_4:8189428-8189447 | None:intergenic | 35.0% | |
| TACCATCCAAATCAAGAACA+AGG | - | chr3_4:8189429-8189448 | None:intergenic | 35.0% | |
| TACTCCTTGTCAAGTAAAAC+TGG | - | chr3_4:8189644-8189663 | None:intergenic | 35.0% | |
| ! | CGAGAAAAAAGTTTTCTGTC+AGG | - | chr3_4:8189794-8189813 | None:intergenic | 35.0% |
| ACCAAAGATTTGACAGTTCT+TGG | + | chr3_4:8189857-8189876 | Msa0488440:CDS | 35.0% | |
| TCCAAGAACTGTCAAATCTT+TGG | - | chr3_4:8189861-8189880 | None:intergenic | 35.0% | |
| CTATTATAACATGAAGACGG+AGG | - | chr3_4:8189932-8189951 | None:intergenic | 35.0% | |
| CTCCGTCTTCATGTTATAAT+AGG | + | chr3_4:8189930-8189949 | Msa0488440:intron | 35.0% | |
| !! | GTCATCTAAATGAGGCATTT+TGG | - | chr3_4:8190061-8190080 | None:intergenic | 35.0% |
| ! | GGTCCTTTATTTATTGCCTA+TGG | + | chr3_4:8190232-8190251 | Msa0488440:intron | 35.0% |
| TTCAGACTGCAAGTTAACAA+TGG | + | chr3_4:8190297-8190316 | Msa0488440:CDS | 35.0% | |
| TCAGACTGCAAGTTAACAAT+GGG | + | chr3_4:8190298-8190317 | Msa0488440:CDS | 35.0% | |
| TCATCAAACCAACTCTCAAT+AGG | - | chr3_4:8190327-8190346 | None:intergenic | 35.0% | |
| GAAATCAAAGCAGAATCAGA+TGG | - | chr3_4:8190351-8190370 | None:intergenic | 35.0% | |
| TCAACGAGTTTCTCCAAAAA+GGG | - | chr3_4:8190381-8190400 | None:intergenic | 35.0% | |
| ATCAACGAGTTTCTCCAAAA+AGG | - | chr3_4:8190382-8190401 | None:intergenic | 35.0% | |
| CTAATTCTATGAAGGGCAAA+AGG | - | chr3_4:8190480-8190499 | None:intergenic | 35.0% | |
| CTAAAATGTGCAAGACAACT+AGG | - | chr3_4:8190552-8190571 | None:intergenic | 35.0% | |
| CAGAAATAGCTATGATTCTG+GGG | + | chr3_4:8190591-8190610 | Msa0488440:three_prime_UTR | 35.0% | |
| ACAGAGGCTGTGTTAATTAA+TGG | + | chr3_4:8190716-8190735 | Msa0488440:three_prime_UTR | 35.0% | |
| CAGAGGCTGTGTTAATTAAT+GGG | + | chr3_4:8190717-8190736 | Msa0488440:three_prime_UTR | 35.0% | |
| TTTGCAAGCTGTAGGAGATT+TGG | - | chr3_4:8186233-8186252 | None:intergenic | 40.0% | |
| !!! | CCATCTTTTTTGCAAGCTGT+AGG | - | chr3_4:8186241-8186260 | None:intergenic | 40.0% |
| CCTACAGCTTGCAAAAAAGA+TGG | + | chr3_4:8186238-8186257 | Msa0488440:CDS | 40.0% | |
| !! | TTTGACTTCTGAGACACATG+AGG | - | chr3_4:8186271-8186290 | None:intergenic | 40.0% |
| AAAAGACCATGTTCGATGGT+TGG | + | chr3_4:8186301-8186320 | Msa0488440:CDS | 40.0% | |
| AATGCCTTCAATCTTGGCAT+TGG | + | chr3_4:8186424-8186443 | Msa0488440:intron | 40.0% | |
| TAGTTACACATGTCTGATGC+AGG | + | chr3_4:8186503-8186522 | Msa0488440:intron | 40.0% | |
| GTATCTGGATAGTGTTTCAC+TGG | + | chr3_4:8186998-8187017 | Msa0488440:intron | 40.0% | |
| ! | GTTGACTCATTGTGAGTTTG+AGG | + | chr3_4:8187126-8187145 | Msa0488440:intron | 40.0% |
| TTACTTGATGTCTGCAATGC+AGG | + | chr3_4:8187739-8187758 | Msa0488440:intron | 40.0% | |
| GACATTGCAGAAACAGAAAC+CGG | - | chr3_4:8188118-8188137 | None:intergenic | 40.0% | |
| AAGTTACAATGGGCATCATC+AGG | - | chr3_4:8188175-8188194 | None:intergenic | 40.0% | |
| ! | TAACAGGCAAGGTTTCAAGT+GGG | - | chr3_4:8188212-8188231 | None:intergenic | 40.0% |
| GTCTCTTACAAAATGACTGG+AGG | - | chr3_4:8188378-8188397 | None:intergenic | 40.0% | |
| TATCCATTAGCCCCATAACA+AGG | - | chr3_4:8188776-8188795 | None:intergenic | 40.0% | |
| ! | GTTATGGGGCTAATGGATAT+TGG | + | chr3_4:8188777-8188796 | Msa0488440:intron | 40.0% |
| ! | ATGTGGATGAAGCATTCTTC+GGG | + | chr3_4:8189026-8189045 | Msa0488440:CDS | 40.0% |
| !! | TTCTTCGGGTTTTCTAGTGA+CGG | + | chr3_4:8189040-8189059 | Msa0488440:CDS | 40.0% |
| GGGATCAATCCATTTGATGA+TGG | + | chr3_4:8189061-8189080 | Msa0488440:CDS | 40.0% | |
| TAGTCGAGACCATCATCAAA+TGG | - | chr3_4:8189073-8189092 | None:intergenic | 40.0% | |
| TGGTCCAGCAAATTCAAGAT+CGG | - | chr3_4:8189107-8189126 | None:intergenic | 40.0% | |
| TGCTTCTATGCTTTCGTCAA+GGG | - | chr3_4:8189155-8189174 | None:intergenic | 40.0% | |
| CTTCACAGGATCCTACATAT+TGG | - | chr3_4:8189186-8189205 | None:intergenic | 40.0% | |
| AACCATGAAGAATCAGGCAT+TGG | - | chr3_4:8189220-8189239 | None:intergenic | 40.0% | |
| ! | GTTCAATGTCATTTGCCATC+AGG | + | chr3_4:8189237-8189256 | Msa0488440:CDS | 40.0% |
| ATGTTCTTCAGTAAGTGGCT+TGG | - | chr3_4:8189263-8189282 | None:intergenic | 40.0% | |
| GCATCATGTTCTTCAGTAAG+TGG | - | chr3_4:8189268-8189287 | None:intergenic | 40.0% | |
| TTACTGAAGAACATGATGCC+AGG | + | chr3_4:8189269-8189288 | Msa0488440:CDS | 40.0% | |
| !! | ACCCTTGTTCTTGATTTGGA+TGG | + | chr3_4:8189424-8189443 | Msa0488440:CDS | 40.0% |
| AACACTGATCCACTCTACAA+TGG | + | chr3_4:8189586-8189605 | Msa0488440:CDS | 40.0% | |
| CATATTTCGCCATTGTAGAG+TGG | - | chr3_4:8189598-8189617 | None:intergenic | 40.0% | |
| ACACTGTCTATGTGCGAAAA+AGG | + | chr3_4:8189663-8189682 | Msa0488440:CDS | 40.0% | |
| ATACTCTCTCCAAAAACTCG+TGG | - | chr3_4:8189697-8189716 | None:intergenic | 40.0% | |
| CTTGATAGATGCACGAATCT+CGG | - | chr3_4:8189826-8189845 | None:intergenic | 40.0% | |
| GATTCGTGCATCTATCAAGA+TGG | + | chr3_4:8189827-8189846 | Msa0488440:CDS | 40.0% | |
| !!! | CTACTATGGCTACTTTTGCT+AGG | - | chr3_4:8189889-8189908 | None:intergenic | 40.0% |
| ATGGGATTCCTATTGAGAGT+TGG | + | chr3_4:8190316-8190335 | Msa0488440:CDS | 40.0% | |
| TTTGGAGAAACTCGTTGATG+TGG | + | chr3_4:8190383-8190402 | Msa0488440:CDS | 40.0% | |
| ATTCTATGAAGGGCAAAAGG+AGG | - | chr3_4:8190477-8190496 | None:intergenic | 40.0% | |
| CTTACTGAACTACAGTACAG+AGG | + | chr3_4:8190700-8190719 | Msa0488440:three_prime_UTR | 40.0% | |
| TAACTGCTGGCATCAATGCT+GGG | - | chr3_4:8186201-8186220 | None:intergenic | 45.0% | |
| TTAACTGCTGGCATCAATGC+TGG | - | chr3_4:8186202-8186221 | None:intergenic | 45.0% | |
| GATGCCAGCAGTTAAAATGG+TGG | + | chr3_4:8186207-8186226 | Msa0488440:exon | 45.0% | |
| !!! | TTGGCCACCATTTTAACTGC+TGG | - | chr3_4:8186214-8186233 | None:intergenic | 45.0% |
| CAGCTTGCAAAAAAGATGGG+AGG | + | chr3_4:8186242-8186261 | Msa0488440:CDS | 45.0% | |
| GTTACTCCAACCATCGAACA+TGG | - | chr3_4:8186310-8186329 | None:intergenic | 45.0% | |
| AAGAGCAGTCTCCCATTCAA+TGG | + | chr3_4:8186608-8186627 | Msa0488440:CDS | 45.0% | |
| TAAGGCTCACCTCCATTTCA+TGG | + | chr3_4:8186657-8186676 | Msa0488440:intron | 45.0% | |
| ACAACTCGGTCCTCATTTGT+GGG | + | chr3_4:8186766-8186785 | Msa0488440:intron | 45.0% | |
| ATACTCATGCCCCACAAATG+AGG | - | chr3_4:8186779-8186798 | None:intergenic | 45.0% | |
| ! | GTATCGACACTGACACATGT+TGG | - | chr3_4:8186899-8186918 | None:intergenic | 45.0% |
| TACCAACATGACTCGACACA+TGG | + | chr3_4:8186916-8186935 | Msa0488440:intron | 45.0% | |
| AACCATGTGTCGAGTCATGT+TGG | - | chr3_4:8186921-8186940 | None:intergenic | 45.0% | |
| CTACATGCTAGTGTCGTATC+TGG | + | chr3_4:8186983-8187002 | Msa0488440:intron | 45.0% | |
| ! | GTTTCACTGGTTGATGCCAT+TGG | + | chr3_4:8187011-8187030 | Msa0488440:intron | 45.0% |
| CTAACAGGCAAGGTTTCAAG+TGG | - | chr3_4:8188213-8188232 | None:intergenic | 45.0% | |
| ! | TCACCTTGTTATGGGGCTAA+TGG | + | chr3_4:8188770-8188789 | Msa0488440:intron | 45.0% |
| !! | TCTTCGGGTTTTCTAGTGAC+GGG | + | chr3_4:8189041-8189060 | Msa0488440:CDS | 45.0% |
| !! | ATGCTTTCGTCAAGGGTACT+AGG | - | chr3_4:8189148-8189167 | None:intergenic | 45.0% |
| CTGCTTCTATGCTTTCGTCA+AGG | - | chr3_4:8189156-8189175 | None:intergenic | 45.0% | |
| GCAGCAAGCTACCAATATGT+AGG | + | chr3_4:8189172-8189191 | Msa0488440:CDS | 45.0% | |
| AGGATCCTGTGAAGAGTTTC+AGG | + | chr3_4:8189192-8189211 | Msa0488440:CDS | 45.0% | |
| AGCCAATGCCTGATTCTTCA+TGG | + | chr3_4:8189215-8189234 | Msa0488440:CDS | 45.0% | |
| AGAATCAAGCTGACATGACC+TGG | - | chr3_4:8189290-8189309 | None:intergenic | 45.0% | |
| TACTAGAGCTGGCAATGAGT+TGG | - | chr3_4:8189374-8189393 | None:intergenic | 45.0% | |
| ! | ATTGCCAGCTCTAGTAAGCA+AGG | + | chr3_4:8189378-8189397 | Msa0488440:CDS | 45.0% |
| ! | GTGGATCAGTGTTTCTGTGA+AGG | - | chr3_4:8189579-8189598 | None:intergenic | 45.0% |
| TCCAAAAACTCGTGGAGGAA+GGG | - | chr3_4:8189689-8189708 | None:intergenic | 45.0% | |
| CTGAGGAGAGTTGTCTACTA+TGG | - | chr3_4:8189903-8189922 | None:intergenic | 45.0% | |
| CATAGTAGACAACTCTCCTC+AGG | + | chr3_4:8189901-8189920 | Msa0488440:CDS | 45.0% | |
| !!! | CAGGGTCATTTTGACTGATG+CGG | - | chr3_4:8190529-8190548 | None:intergenic | 45.0% |
| ATGTGCAAGACAACTAGGCA+GGG | - | chr3_4:8190547-8190566 | None:intergenic | 45.0% | |
| AATGTGCAAGACAACTAGGC+AGG | - | chr3_4:8190548-8190567 | None:intergenic | 45.0% | |
| !! | AATAATAATTTAAAAGAAAA+TGG | - | chr3_4:8186958-8186977 | None:intergenic | 5.0% |
| !!! | ATTTTCTTTTAAATTATTAT+TGG | + | chr3_4:8186957-8186976 | Msa0488440:intron | 5.0% |
| !! | TGAAATAAATTAATAAATTA+AGG | - | chr3_4:8189509-8189528 | None:intergenic | 5.0% |
| GGTTGGAGTAACCGATGCAA+TGG | + | chr3_4:8186318-8186337 | Msa0488440:CDS | 50.0% | |
| GACAACTCGGTCCTCATTTG+TGG | + | chr3_4:8186765-8186784 | Msa0488440:intron | 50.0% | |
| CAACTCGGTCCTCATTTGTG+GGG | + | chr3_4:8186767-8186786 | Msa0488440:intron | 50.0% | |
| TTACTGTCATCCGCTCGATC+AGG | - | chr3_4:8188968-8188987 | None:intergenic | 50.0% | |
| TGGCTCCTGAAACTCTTCAC+AGG | - | chr3_4:8189200-8189219 | None:intergenic | 50.0% | |
| GTCTCCTTGCTTACTAGAGC+TGG | - | chr3_4:8189385-8189404 | None:intergenic | 50.0% | |
| CTCCAAAAACTCGTGGAGGA+AGG | - | chr3_4:8189690-8189709 | None:intergenic | 50.0% | |
| CTCTCTCCAAAAACTCGTGG+AGG | - | chr3_4:8189694-8189713 | None:intergenic | 50.0% | |
| GAAGACGGAGGAAATACCTG+AGG | - | chr3_4:8189920-8189939 | None:intergenic | 50.0% | |
| GACTAACCCACCTGATCGAG+CGG | + | chr3_4:8188955-8188974 | Msa0488440:CDS | 55.0% | |
| TGTCATCCGCTCGATCAGGT+GGG | - | chr3_4:8188964-8188983 | None:intergenic | 55.0% | |
| ! | CAGTAAGTGGCTTGGCCTGA+TGG | - | chr3_4:8189255-8189274 | None:intergenic | 55.0% |
| ! | GCCCTTCCTCCACGAGTTTT+TGG | + | chr3_4:8189685-8189704 | Msa0488440:CDS | 55.0% |
| CTGTCATCCGCTCGATCAGG+TGG | - | chr3_4:8188965-8188984 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 8186127 | 8190773 | 8186127 | ID=Msa0488440;Name=Msa0488440 |
| chr3_4 | mRNA | 8186127 | 8190773 | 8186127 | ID=Msa0488440-mRNA-1;Parent=Msa0488440;Name=Msa0488440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=81|1|1|1|1|1|6|318|469 |
| chr3_4 | exon | 8186127 | 8186379 | 8186127 | ID=Msa0488440-mRNA-1:exon:2740;Parent=Msa0488440-mRNA-1 |
| chr3_4 | exon | 8186525 | 8186655 | 8186525 | ID=Msa0488440-mRNA-1:exon:2741;Parent=Msa0488440-mRNA-1 |
| chr3_4 | exon | 8188106 | 8188205 | 8188106 | ID=Msa0488440-mRNA-1:exon:2742;Parent=Msa0488440-mRNA-1 |
| chr3_4 | exon | 8188939 | 8189445 | 8188939 | ID=Msa0488440-mRNA-1:exon:2743;Parent=Msa0488440-mRNA-1 |
| chr3_4 | exon | 8189585 | 8189922 | 8189585 | ID=Msa0488440-mRNA-1:exon:2744;Parent=Msa0488440-mRNA-1 |
| chr3_4 | exon | 8190294 | 8190773 | 8190294 | ID=Msa0488440-mRNA-1:exon:2745;Parent=Msa0488440-mRNA-1 |
| chr3_4 | five_prime_UTR | 8186127 | 8186207 | 8186127 | ID=Msa0488440-mRNA-1:five_prime_utr;Parent=Msa0488440-mRNA-1 |
| chr3_4 | CDS | 8186208 | 8186379 | 8186208 | ID=Msa0488440-mRNA-1:cds;Parent=Msa0488440-mRNA-1 |
| chr3_4 | CDS | 8186525 | 8186655 | 8186525 | ID=Msa0488440-mRNA-1:cds;Parent=Msa0488440-mRNA-1 |
| chr3_4 | CDS | 8188106 | 8188205 | 8188106 | ID=Msa0488440-mRNA-1:cds;Parent=Msa0488440-mRNA-1 |
| chr3_4 | CDS | 8188939 | 8189445 | 8188939 | ID=Msa0488440-mRNA-1:cds;Parent=Msa0488440-mRNA-1 |
| chr3_4 | CDS | 8189585 | 8189922 | 8189585 | ID=Msa0488440-mRNA-1:cds;Parent=Msa0488440-mRNA-1 |
| chr3_4 | CDS | 8190294 | 8190455 | 8190294 | ID=Msa0488440-mRNA-1:cds;Parent=Msa0488440-mRNA-1 |
| chr3_4 | three_prime_UTR | 8190456 | 8190773 | 8190456 | ID=Msa0488440-mRNA-1:three_prime_utr;Parent=Msa0488440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
