AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0346350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346350 MtrunA17_Chr3g0078271 99.006 704 7 0 1 704 1 704 0.0 1420
Msa0346350 MtrunA17_Chr8g0355141 78.223 574 109 10 143 704 195 764 0.0 884
Msa0346350 MtrunA17_Chr8g0368211 64.000 75 25 2 404 478 1 73 4.53e-22 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346350 AT2G27100.1 61.300 646 202 19 85 704 97 720 0.0 695

Find 276 sgRNAs with CRISPR-Local

Find 612 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGTAACCTTCGCTTTAA+AGG 0.144365 3_1:+6734262 None:intergenic
GCCTTTAAAGCGAAGGTTAC+TGG 0.178081 3_1:-6734263 Msa0346350:CDS
CCGTGGCTTAACATCTATTA+AGG 0.179953 3_1:-6735250 Msa0346350:CDS
ATATCTTCTTGTATCCTTCT+AGG 0.180061 3_1:+6735405 None:intergenic
CGTAAGCTTGACAAGGAAAA+AGG 0.217997 3_1:-6735360 Msa0346350:CDS
AGGTGGAGCGGTGGTGGTGG+TGG 0.231896 3_1:+6740294 None:intergenic
ATCTGTTTCCTCCTCTGAAT+TGG 0.232822 3_1:+6735518 None:intergenic
ATGACAGTAACTTCTTCTTC+TGG 0.235175 3_1:+6733124 None:intergenic
TCTTCATGCCTTGCTCCTTC+TGG 0.255229 3_1:+6735111 None:intergenic
GGATATCAAAACGGAATTTC+TGG 0.258959 3_1:-6738622 Msa0346350:intron
AGCAATTTGAAATTATGATT+TGG 0.260525 3_1:+6732633 None:intergenic
ATTCATGGTGTAGATTATTA+TGG 0.272200 3_1:-6735177 Msa0346350:CDS
AAGTTGCGATGCAGATGTTT+AGG 0.279432 3_1:-6733912 Msa0346350:CDS
CTCCTCTGAATTGGGCTCAC+TGG 0.296081 3_1:+6735527 None:intergenic
TAGCGGCGGTCACGATAGTT+AGG 0.305964 3_1:+6740094 None:intergenic
CTTCTCTTATCTCCATTCCT+AGG 0.306626 3_1:-6740382 Msa0346350:five_prime_UTR
GCAATTTGAAATTATGATTT+GGG 0.312787 3_1:+6732634 None:intergenic
TACCTCCCCGGAACAGAAAA+AGG 0.313583 3_1:-6732837 Msa0346350:three_prime_UTR
CTGGTTTGGCTCATTGAGAT+TGG 0.315755 3_1:-6733076 Msa0346350:three_prime_UTR
AAGAAGATGAAGAAATGAAA+TGG 0.316200 3_1:+6740402 None:intergenic
GGGTTGGGGTTAGGTGGAGG+TGG 0.324888 3_1:+6740253 None:intergenic
AATTATGTTGGCCTTGTATC+AGG 0.325609 3_1:-6732721 Msa0346350:three_prime_UTR
ACATGGCAGGGGATCTAATA+AGG 0.335645 3_1:-6735475 Msa0346350:CDS
GAAAAGTATGGTTGGAAGTA+TGG 0.336039 3_1:-6734931 Msa0346350:CDS
ACTGGCTTGCTCTGATTTAG+TGG 0.341815 3_1:+6735545 None:intergenic
AGTTGCGATGCAGATGTTTA+GGG 0.344816 3_1:-6733911 Msa0346350:CDS
ACACACTTATAACATATCTT+TGG 0.344912 3_1:-6735203 Msa0346350:CDS
AAATCGCGACGACGAGGGTT+GGG 0.346216 3_1:+6740238 None:intergenic
TCTGTTTCCTCCTCTGAATT+GGG 0.350220 3_1:+6735519 None:intergenic
TTCTAATGTTACAACATCTA+TGG 0.354148 3_1:+6732958 None:intergenic
AACATCTATTAAGGGCTTAG+AGG 0.355957 3_1:-6735241 Msa0346350:CDS
AACATCTGCATCGCAACTTC+TGG 0.357957 3_1:+6733916 None:intergenic
CTCCTGGATGAATTGCTTAT+AGG 0.362268 3_1:+6736326 None:intergenic
GCTTGTAGGTTTCACTGGTT+TGG 0.363855 3_1:-6733090 Msa0346350:exon
CGCGGCCACCTCGGCCGCCA+CGG 0.365642 3_1:+6740176 None:intergenic
ATGAAGAAATGAAATGGGTT+TGG 0.371123 3_1:+6740408 None:intergenic
GGAATTAACATCAAAATTGC+GGG 0.376005 3_1:-6734821 Msa0346350:CDS
ACATATCTTTGGCGGATTCA+TGG 0.376855 3_1:-6735192 Msa0346350:CDS
CTCCGCATCCGTCGGGGATC+AGG 0.378643 3_1:+6733787 None:intergenic
CATAGACTATCGGAGCTTGT+AGG 0.379735 3_1:-6733104 Msa0346350:exon
CCAGGTACAGGCATCAAAAC+TGG 0.382108 3_1:+6734061 None:intergenic
CTGTAATCTAGTTGTAATAA+TGG 0.382819 3_1:-6733005 Msa0346350:three_prime_UTR
CGACGACGAGGGTTGGGGTT+AGG 0.385071 3_1:+6740244 None:intergenic
TTGTTCTGTCACTCCTATCC+TGG 0.389177 3_1:+6734203 None:intergenic
ATTACTGTAAGTAAATTTGT+TGG 0.391234 3_1:+6735924 None:intergenic
GGCCGAGGTGGCCGCGGTGG+AGG 0.393766 3_1:-6740169 Msa0346350:CDS
GGGAGGAGGTGGAGCGGTGG+TGG 0.394202 3_1:+6740288 None:intergenic
CGTGGCGGCCGAGGTGGCCG+CGG 0.394289 3_1:-6740175 Msa0346350:CDS
AGGAGGTGGAGCGGTGGTGG+TGG 0.395509 3_1:+6740291 None:intergenic
TCAGGAATGACGATGCGTTC+TGG 0.403076 3_1:-6733862 Msa0346350:CDS
TCATGGGATGGCGAACTATC+AGG 0.408251 3_1:+6734169 None:intergenic
TGACAGTAACTTCTTCTTCT+GGG 0.410350 3_1:+6733125 None:intergenic
TTTATACCTATTCAGGCCTC+TGG 0.412686 3_1:-6733959 Msa0346350:intron
AGAAGATGAAGAAATGAAAT+GGG 0.414047 3_1:+6740403 None:intergenic
GTTAATTCCAACACAAGCTC+TGG 0.415960 3_1:+6734835 None:intergenic
GCCTGGATCCCTTGGAAGTA+AGG 0.418306 3_1:-6735023 Msa0346350:CDS
CACTTATAACATATCTTTGG+CGG 0.418530 3_1:-6735200 Msa0346350:CDS
AAAATTAGGGATGAAAAGTA+TGG 0.418748 3_1:-6734943 Msa0346350:CDS
CGAGGGTTGGGGTTAGGTGG+AGG 0.418872 3_1:+6740250 None:intergenic
CGTGGCTTAACATCTATTAA+GGG 0.420071 3_1:-6735249 Msa0346350:CDS
GCAGAGAAGGTTGGACAGCC+TGG 0.420227 3_1:-6735040 Msa0346350:CDS
CGTCCTCACCGTGGCGGCCG+AGG 0.422279 3_1:-6740184 Msa0346350:CDS
TAAGTACCTCCGCATCCGTC+GGG 0.423656 3_1:+6733780 None:intergenic
AGAAGATATTCATCAGGTTC+AGG 0.424015 3_1:-6735391 Msa0346350:CDS
CGAGGTGGCCGCGGTGGAGG+TGG 0.424378 3_1:-6740166 Msa0346350:CDS
CTTAGAGGGTGTTGAGCTAC+TGG 0.424649 3_1:-6735226 Msa0346350:CDS
GGCGTTCCACCAGGAGCATC+AGG 0.425251 3_1:+6734668 None:intergenic
AGATCGTCGTCGGGAGGAGG+TGG 0.425711 3_1:+6740277 None:intergenic
TTCTCTTATCTCCATTCCTA+GGG 0.426029 3_1:-6740381 Msa0346350:five_prime_UTR
GAATGAAAATGCTCGACGTT+TGG 0.427952 3_1:-6735742 Msa0346350:CDS
GTTTGTGGATGTCAGTGACC+TGG 0.428876 3_1:-6732686 Msa0346350:three_prime_UTR
AGCTAAGTCGGGGTCAGAAT+GGG 0.431013 3_1:-6735085 Msa0346350:CDS
CTTTGCAGTCCTTACTTCCA+AGG 0.431457 3_1:+6735014 None:intergenic
CACCTCCACCGCGGCCACCT+CGG 0.431991 3_1:+6740167 None:intergenic
TGAAAGATGATCGTGGGAAT+CGG 0.435042 3_1:-6734231 Msa0346350:CDS
GGTGGAGCGGTGGTGGTGGT+GGG 0.436911 3_1:+6740295 None:intergenic
TCCTTACTTCCAAGGGATCC+AGG 0.438671 3_1:+6735022 None:intergenic
GTTTCCATTCATCTCTTCAA+TGG 0.441656 3_1:-6740359 Msa0346350:exon
TGCGTTCTGGTCCTCACATA+GGG 0.441667 3_1:-6733849 Msa0346350:CDS
CGGTGGTGGTGGTGGGAGAT+CGG 0.445528 3_1:+6740302 None:intergenic
ACCTGAGATTGCTGCATGAC+AGG 0.446698 3_1:+6734647 None:intergenic
CGCTGTATAAGAGATCTAGA+AGG 0.447329 3_1:-6740036 Msa0346350:CDS
CTGTCAGTTCTGAACCTAGA+AGG 0.448137 3_1:-6735419 Msa0346350:CDS
GTATATCATCTTCAAGCTCC+TGG 0.449728 3_1:+6736310 None:intergenic
GGTTTCCCAACTGCCTCTCA+TGG 0.451422 3_1:+6734152 None:intergenic
TCGGAGCTTGTAGGTTTCAC+TGG 0.460462 3_1:-6733095 Msa0346350:exon
GTTGGACAGCCTGGATCCCT+TGG 0.462251 3_1:-6735031 Msa0346350:CDS
TTATGCAATTACCTGTCGTT+AGG 0.463422 3_1:+6739998 None:intergenic
GGGAGATCGTCGTCGGGAGG+AGG 0.464936 3_1:+6740274 None:intergenic
CAGCTAAGTCGGGGTCAGAA+TGG 0.467971 3_1:-6735086 Msa0346350:CDS
TTGATGCCTGTACCTGGTGC+CGG 0.468596 3_1:-6734055 Msa0346350:CDS
TGATGCCTGTACCTGGTGCC+GGG 0.471237 3_1:-6734054 Msa0346350:intron
CGACGAGACTGCTGCGGAGG+AGG 0.471743 3_1:+6740067 None:intergenic
CATGAAGAAACAGCTAAGTC+GGG 0.472186 3_1:-6735096 Msa0346350:CDS
TATGATTTGTGCAGAAATCC+AGG 0.472977 3_1:-6735582 Msa0346350:intron
CACTGACATCCACAAACAAC+AGG 0.474426 3_1:+6732692 None:intergenic
GCCTGTCATGCAGCAATCTC+AGG 0.476952 3_1:-6734648 Msa0346350:intron
GAACTGACAGGGTGAGCCTT+CGG 0.478155 3_1:+6735432 None:intergenic
CGATTTCTCTGCTGCTCCGA+AGG 0.478520 3_1:-6735448 Msa0346350:CDS
ATCGCAACTTCTGGTGGAGC+AGG 0.479254 3_1:+6733925 None:intergenic
TCTCACATGCCTAAAACCTT+TGG 0.481229 3_1:+6735134 None:intergenic
TCCCACGATCATCTTTCAAT+CGG 0.481981 3_1:+6734236 None:intergenic
GTGGATGCAGAGTTTAAACC+TGG 0.485312 3_1:+6735564 None:intergenic
GGCAGATTTCCACATCGATC+TGG 0.487532 3_1:-6738649 Msa0346350:CDS
GATAGGAGTGACAGAACAAA+TGG 0.489165 3_1:-6734199 Msa0346350:CDS
TGTAGTGATCCTGATGCTCC+TGG 0.490637 3_1:-6734677 Msa0346350:intron
GGCGGCCGAGGTGGCCGCGG+TGG 0.490769 3_1:-6740172 Msa0346350:CDS
CATAGCCACCGAGGTGATCA+TGG 0.494390 3_1:+6738716 None:intergenic
CCATCCCATGAGAGGCAGTT+GGG 0.495045 3_1:-6734157 Msa0346350:CDS
ATACCACTCCGCATCCTTGT+GGG 0.495435 3_1:+6736105 None:intergenic
TATGAACGTGGAGGTGGAAG+GGG 0.497685 3_1:-6738697 Msa0346350:CDS
TCGTGGGAATCGGCGAGACC+AGG 0.497837 3_1:-6734221 Msa0346350:CDS
CCATCTTCGTATGATCCATC+AGG 0.498285 3_1:-6733880 Msa0346350:CDS
GGAGGTGGGAGATCGTCGTC+GGG 0.499181 3_1:+6740268 None:intergenic
GGTTGGGGTTAGGTGGAGGT+GGG 0.500708 3_1:+6740254 None:intergenic
CTCGGCCGCCACGGTGAGGA+CGG 0.500922 3_1:+6740185 None:intergenic
TATATTCCGATCCCACTTAG+TGG 0.503793 3_1:-6732795 Msa0346350:three_prime_UTR
GCATGAAGAAACAGCTAAGT+CGG 0.504054 3_1:-6735097 Msa0346350:CDS
TTTGCAGTCCTTACTTCCAA+GGG 0.506157 3_1:+6735015 None:intergenic
ATGCGTTCTGGTCCTCACAT+AGG 0.506680 3_1:-6733850 Msa0346350:CDS
GGCATCAAAACTGGAGGAGG+GGG 0.507533 3_1:+6734070 None:intergenic
CAAATCTGCATAACCGCGAT+TGG 0.508789 3_1:+6737258 None:intergenic
TTTAGGCATGTGAGACCAGA+AGG 0.513433 3_1:-6735126 Msa0346350:CDS
GAAATCGCGACGACGAGGGT+TGG 0.514577 3_1:+6740237 None:intergenic
ATGCAGATGTTTAGGGATCA+AGG 0.515375 3_1:-6733904 Msa0346350:CDS
TTTGTGGATGTCAGTGACCT+GGG 0.515697 3_1:-6732685 Msa0346350:three_prime_UTR
ATCTGCATCGCAACTTCTGG+TGG 0.515886 3_1:+6733919 None:intergenic
ACCAACCCGGCACCAGGTAC+AGG 0.516357 3_1:+6734049 None:intergenic
AATCGCGACGACGAGGGTTG+GGG 0.517751 3_1:+6740239 None:intergenic
TGGAGGTGGGAGATCGTCGT+CGG 0.518234 3_1:+6740267 None:intergenic
CTATGAACGTGGAGGTGGAA+GGG 0.520781 3_1:-6738698 Msa0346350:CDS
GTTATGCAGATTTGCCAAGT+GGG 0.524038 3_1:-6737249 Msa0346350:CDS
TGCATGACAGGCGTTCCACC+AGG 0.524219 3_1:+6734659 None:intergenic
GATACAAGAAGATATTCATC+AGG 0.525306 3_1:-6735397 Msa0346350:CDS
TGGAATTAACATCAAAATTG+CGG 0.525419 3_1:-6734822 Msa0346350:CDS
GCTATGAACGTGGAGGTGGA+AGG 0.526026 3_1:-6738699 Msa0346350:CDS
CCCAACTGCCTCTCATGGGA+TGG 0.526209 3_1:+6734157 None:intergenic
TATACTCTGACTTGTACTCT+TGG 0.527237 3_1:+6736158 None:intergenic
GGTGGCTATGAACGTGGAGG+TGG 0.529083 3_1:-6738703 Msa0346350:CDS
GAAACAATGTTCGATGCATA+TGG 0.530275 3_1:-6734124 Msa0346350:CDS
TTGGCTCATTGAGATTGGAT+TGG 0.531912 3_1:-6733071 Msa0346350:three_prime_UTR
TCTGGTGGAGCAGGAACAAA+GGG 0.532051 3_1:+6733934 None:intergenic
TTCCCGAGCAAAATGCTACC+TGG 0.532763 3_1:-6732932 Msa0346350:three_prime_UTR
TTAGGGATGAAAAGTATGGT+TGG 0.532966 3_1:-6734939 Msa0346350:CDS
CTTCTAGGTTCAGAACTGAC+AGG 0.537567 3_1:+6735420 None:intergenic
TAAGGCTCGCAGTGGATCTG+TGG 0.539326 3_1:-6735289 Msa0346350:CDS
ATGAATGGAAACCCTAGGAA+TGG 0.540256 3_1:+6740370 None:intergenic
TGCTGCAGCAGCTGATATGT+TGG 0.540327 3_1:-6734980 Msa0346350:CDS
TACCTGTCGTTAGGTCTATG+AGG 0.541014 3_1:+6740007 None:intergenic
CCAACATAATTTCTTAACCA+TGG 0.542940 3_1:+6732733 None:intergenic
AAGCCACGGATAATTACTAC+AGG 0.543566 3_1:+6735264 None:intergenic
ACAGGCATCAAAACTGGAGG+AGG 0.544938 3_1:+6734067 None:intergenic
ATATTCCGATCCCACTTAGT+GGG 0.545296 3_1:-6732794 Msa0346350:three_prime_UTR
GAACGTGGAGGTGGAAGGGG+TGG 0.546875 3_1:-6738694 Msa0346350:CDS
CCGTCGGGGATCAGGTCTAA+AGG 0.547560 3_1:+6733795 None:intergenic
GAACGCATCGTCATTCCTGA+TGG 0.548956 3_1:+6733865 None:intergenic
CGGTCACGATAGTTAGGGCT+AGG 0.549799 3_1:+6740100 None:intergenic
GGGTAGTTTGCAATTTGACC+TGG 0.551672 3_1:+6732654 None:intergenic
TCGGCCATTGAAGAGATGAA+TGG 0.551754 3_1:+6740355 None:intergenic
GACCTGATCCCCGACGGATG+CGG 0.552652 3_1:-6733789 Msa0346350:CDS
ACATCTATTAAGGGCTTAGA+GGG 0.553584 3_1:-6735240 Msa0346350:CDS
GTTTCCCAACTGCCTCTCAT+GGG 0.553750 3_1:+6734153 None:intergenic
TTTCAATACCCACAAGGATG+CGG 0.555795 3_1:-6736113 Msa0346350:CDS
AGAGAAACCAACCCGGCACC+AGG 0.556392 3_1:+6734043 None:intergenic
TATACCACTCCGCATCCTTG+TGG 0.557388 3_1:+6736104 None:intergenic
CCTCACCGTGGCGGCCGAGG+TGG 0.560575 3_1:-6740181 Msa0346350:CDS
CCTGATGGATCATACGAAGA+TGG 0.561638 3_1:+6733880 None:intergenic
TTATACCTATTCAGGCCTCT+GGG 0.561914 3_1:-6733958 Msa0346350:intron
AGGACAAGCCTTTAAAGCGA+AGG 0.563691 3_1:-6734270 Msa0346350:CDS
GCTGTATAAGAGATCTAGAA+GGG 0.563735 3_1:-6740035 Msa0346350:CDS
AAGAGATGAATGGAAACCCT+AGG 0.566529 3_1:+6740365 None:intergenic
GCCATCCCATGAGAGGCAGT+TGG 0.567581 3_1:-6734158 Msa0346350:CDS
TTCTGGTGGAGCAGGAACAA+AGG 0.568203 3_1:+6733933 None:intergenic
GTAAAAGAAGAAGACATGGC+AGG 0.568918 3_1:-6735488 Msa0346350:CDS
ATTTACTTACAGTAATTGAA+AGG 0.571034 3_1:-6735917 Msa0346350:intron
CGATGTGGAAATCTGCCACC+AGG 0.571313 3_1:+6738655 None:intergenic
TTATGCAGATTTGCCAAGTG+GGG 0.573070 3_1:-6737248 Msa0346350:CDS
CTTCTAGATCTCTTATACAG+CGG 0.573736 3_1:+6740037 None:intergenic
GTCCTATAAGCAATTCATCC+AGG 0.574466 3_1:-6736328 Msa0346350:CDS
GACAGTAACTTCTTCTTCTG+GGG 0.578270 3_1:+6733126 None:intergenic
ATAAGTACCTCCGCATCCGT+CGG 0.578460 3_1:+6733779 None:intergenic
GGAATCGGCGAGACCAGGAT+AGG 0.578499 3_1:-6734216 Msa0346350:CDS
AGCCAGTGAGCCCAATTCAG+AGG 0.578683 3_1:-6735529 Msa0346350:CDS
GGTGGGAGATCGTCGTCGGG+AGG 0.579636 3_1:+6740271 None:intergenic
CATCGAACATTGTTTCATCA+CGG 0.580490 3_1:+6734131 None:intergenic
TAAAAGAAGAAGACATGGCA+GGG 0.583889 3_1:-6735487 Msa0346350:CDS
GAACGACGAGACTGCTGCGG+AGG 0.585310 3_1:+6740064 None:intergenic
AAGTTACTGTCATAGACTAT+CGG 0.585625 3_1:-6733114 Msa0346350:CDS
GCCGATTGAAAGATGATCGT+GGG 0.585756 3_1:-6734237 Msa0346350:CDS
AGCGGCGGTCACGATAGTTA+GGG 0.586078 3_1:+6740095 None:intergenic
CCATGGTTAAGAAATTATGT+TGG 0.587155 3_1:-6732733 Msa0346350:three_prime_UTR
ATGTGAGACCAGAAGGAGCA+AGG 0.587740 3_1:-6735119 Msa0346350:CDS
TCTGAGTTGAATGATACAGC+AGG 0.589557 3_1:+6734097 None:intergenic
CCACCTCGGCCGCCACGGTG+AGG 0.591302 3_1:+6740181 None:intergenic
AAGGCTCGCAGTGGATCTGT+GGG 0.592274 3_1:-6735288 Msa0346350:CDS
AAATGCTCGACGTTTGGCAA+AGG 0.592998 3_1:-6735736 Msa0346350:CDS
TCAGAGGAGGAAACAGATGC+TGG 0.593610 3_1:-6735513 Msa0346350:CDS
TTTCCACATCGATCTGGAGG+GGG 0.594827 3_1:-6738643 Msa0346350:CDS
TACCTACGCTCAGCTTCAGA+TGG 0.594958 3_1:+6736285 None:intergenic
CGGGGATCAGGTCTAAAGGT+GGG 0.597507 3_1:+6733799 None:intergenic
TTAATTCCAACACAAGCTCT+GGG 0.597647 3_1:+6734836 None:intergenic
GTCGGGAGGAGGTGGAGCGG+TGG 0.598086 3_1:+6740285 None:intergenic
CACCTCGGTGGCTATGAACG+TGG 0.598840 3_1:-6738709 Msa0346350:CDS
TATGCAGATTTGCCAAGTGG+GGG 0.600967 3_1:-6737247 Msa0346350:CDS
ACAGGAAAAGACCTGATACA+AGG 0.601183 3_1:+6732710 None:intergenic
AGATTTCCACATCGATCTGG+AGG 0.603786 3_1:-6738646 Msa0346350:CDS
CGACGAGGGTTGGGGTTAGG+TGG 0.605859 3_1:+6740247 None:intergenic
CTAGATCTCTTATACAGCGG+AGG 0.609795 3_1:+6740040 None:intergenic
TCGGGGATCAGGTCTAAAGG+TGG 0.610998 3_1:+6733798 None:intergenic
GGCCGCCACGGTGAGGACGG+CGG 0.613259 3_1:+6740188 None:intergenic
AAAACACCCAGAGCTTGTGT+TGG 0.614464 3_1:-6734842 Msa0346350:CDS
CTGATCCCCGACGGATGCGG+AGG 0.614753 3_1:-6733786 Msa0346350:intron
CAGGCATCAAAACTGGAGGA+GGG 0.615388 3_1:+6734068 None:intergenic
GTCCTCATAGACCTAACGAC+AGG 0.615608 3_1:-6740009 Msa0346350:intron
GTCGTCGGGAGGAGGTGGAG+CGG 0.616964 3_1:+6740282 None:intergenic
GGTTATGCAGATTTGCCAAG+TGG 0.618297 3_1:-6737250 Msa0346350:CDS
TATTCCGATCCCACTTAGTG+GGG 0.621115 3_1:-6732793 Msa0346350:three_prime_UTR
ATTTCCACATCGATCTGGAG+GGG 0.621278 3_1:-6738644 Msa0346350:CDS
GTGGTGCAGTTATCAAGACT+TGG 0.626723 3_1:-6733152 Msa0346350:intron
AGTGATCCTGATGCTCCTGG+TGG 0.627928 3_1:-6734674 Msa0346350:CDS
GGAGAACGACGAGACTGCTG+CGG 0.631420 3_1:+6740061 None:intergenic
GGTCGAAATCGCGACGACGA+GGG 0.633423 3_1:+6740233 None:intergenic
CCTTTAGACCTGATCCCCGA+CGG 0.633767 3_1:-6733795 Msa0346350:CDS
GATTTCCACATCGATCTGGA+GGG 0.634289 3_1:-6738645 Msa0346350:CDS
AAGTACCTCCGCATCCGTCG+GGG 0.635573 3_1:+6733781 None:intergenic
GACCGCCGTCCTCACCGTGG+CGG 0.636148 3_1:-6740190 Msa0346350:CDS
GGCCGATTGAAAGATGATCG+TGG 0.636197 3_1:-6734238 Msa0346350:CDS
TATGGTTGGAAGTATGGCTG+TGG 0.637523 3_1:-6734925 Msa0346350:CDS
ATAGTTCGCCATCCCATGAG+AGG 0.637985 3_1:-6734165 Msa0346350:CDS
TTAAAGCGAAGGTTACTGGA+AGG 0.638659 3_1:-6734259 Msa0346350:CDS
GGTCGTGAGATTCGAGAGGG+AGG 0.640564 3_1:+6740323 None:intergenic
CCTTAATAGATGTTAAGCCA+CGG 0.640737 3_1:+6735250 None:intergenic
CAGTGAGCCCAATTCAGAGG+AGG 0.641145 3_1:-6735526 Msa0346350:CDS
CGTTCTGGTCCTCACATAGG+GGG 0.645123 3_1:-6733847 Msa0346350:CDS
GCGTTCTGGTCCTCACATAG+GGG 0.645525 3_1:-6733848 Msa0346350:CDS
CTTGAGACTAGTGATGCCAA+AGG 0.645562 3_1:-6735150 Msa0346350:CDS
GCAGATCTGGATGCCAATCG+CGG 0.645963 3_1:-6737271 Msa0346350:intron
CTTGGAAGTAAGGACTGCAA+AGG 0.649139 3_1:-6735013 Msa0346350:CDS
TGTTGTTCGTAAGCTTGACA+AGG 0.650753 3_1:-6735367 Msa0346350:CDS
CGGTCGAAATCGCGACGACG+AGG 0.651901 3_1:+6740232 None:intergenic
GGGAGGAACAGCAATCATAG+AGG 0.652456 3_1:+6733819 None:intergenic
TTCTAGGTTCAGAACTGACA+GGG 0.653359 3_1:+6735421 None:intergenic
GGCTATGCAGATGATAGACC+TGG 0.653573 3_1:-6738673 Msa0346350:CDS
GGCGTTTGATGTCTCTATCG+CGG 0.654630 3_1:+6740131 None:intergenic
AGGCATCAAAACTGGAGGAG+GGG 0.658058 3_1:+6734069 None:intergenic
TAATCTAGTTGTAATAATGG+AGG 0.660570 3_1:-6733002 Msa0346350:three_prime_UTR
AATAGTGATAAGGCTCGCAG+TGG 0.662545 3_1:-6735297 Msa0346350:CDS
AGCTTATTTCAATACCCACA+AGG 0.664399 3_1:-6736119 Msa0346350:CDS
ATCGGTCGTGAGATTCGAGA+GGG 0.664847 3_1:+6740320 None:intergenic
GGCCCTGTAGTAATTATCCG+TGG 0.666056 3_1:-6735267 Msa0346350:CDS
GCTGCGGAGGAGGAGAATAG+CGG 0.667835 3_1:+6740077 None:intergenic
TGCCATCTGAAGCTGAGCGT+AGG 0.669466 3_1:-6736287 Msa0346350:intron
AAAAGAAGAAGACATGGCAG+GGG 0.670768 3_1:-6735486 Msa0346350:CDS
ATTCCGATCCCACTTAGTGG+GGG 0.677008 3_1:-6732792 Msa0346350:three_prime_UTR
ACAATGTTCGATGCATATGG+TGG 0.677228 3_1:-6734121 Msa0346350:CDS
GGTGGTAAAAGAAGAAGACA+TGG 0.677981 3_1:-6735492 Msa0346350:CDS
CTCGGTGGCTATGAACGTGG+AGG 0.680236 3_1:-6738706 Msa0346350:CDS
ATGAAGAAACAGCTAAGTCG+GGG 0.681698 3_1:-6735095 Msa0346350:CDS
CGAAATCTCTGTCGTCACGA+CGG 0.683725 3_1:+6740212 None:intergenic
GGATCAGGTCTAAAGGTGGG+AGG 0.688645 3_1:+6733802 None:intergenic
GAGGAGGAAACAGATGCTGG+TGG 0.689092 3_1:-6735510 Msa0346350:CDS
GCGGAGGAGGAGAATAGCGG+CGG 0.691138 3_1:+6740080 None:intergenic
TGTTGTGGATAATCAAACCA+TGG 0.692952 3_1:-6732750 Msa0346350:three_prime_UTR
GATCGGTCGTGAGATTCGAG+AGG 0.698207 3_1:+6740319 None:intergenic
GCAGGAACAAAGGGTCCCAG+AGG 0.699153 3_1:+6733943 None:intergenic
CTGTATAAGAGATCTAGAAG+GGG 0.699206 3_1:-6740034 Msa0346350:CDS
GGTACAGGCATCAAAACTGG+AGG 0.702355 3_1:+6734064 None:intergenic
AGGTTTGGCCATGATCACCT+CGG 0.709490 3_1:-6738724 Msa0346350:CDS
TTTGGCCATGATCACCTCGG+TGG 0.711359 3_1:-6738721 Msa0346350:CDS
TTCGACCGCCGTCCTCACCG+TGG 0.713062 3_1:-6740193 Msa0346350:CDS
ATACCCACAAGGATGCGGAG+TGG 0.729545 3_1:-6736108 Msa0346350:intron
AGCCACGGATAATTACTACA+GGG 0.753218 3_1:+6735265 None:intergenic
CTCCACGTTCATAGCCACCG+AGG 0.763616 3_1:+6738707 None:intergenic
TATGCAGATGATAGACCTGG+TGG 0.763982 3_1:-6738670 Msa0346350:CDS
TGTAGTAACCACCTCCACCG+CGG 0.784401 3_1:+6740158 None:intergenic
AGTTAGGGCTAGGACTACGA+CGG 0.787338 3_1:+6740110 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAAAAAATCAATAG+AGG + chr3_1:6735320-6735339 None:intergenic 10.0%
!!! TTAATATGTTTTTTATGTTA+TGG - chr3_1:6735793-6735812 Msa0346350:intron 10.0%
!!! TAATATGTTTTTTATGTTAT+GGG - chr3_1:6735794-6735813 Msa0346350:intron 10.0%
!! ATAAACAAAAAAATTTGATT+TGG + chr3_1:6739394-6739413 None:intergenic 10.0%
!! TAAAATACAATAAAATAACA+TGG + chr3_1:6739502-6739521 None:intergenic 10.0%
!! AATTAATCGTTTATTAATTG+AGG - chr3_1:6733134-6733153 Msa0346350:CDS 15.0%
!!! TAATTGATAGCATTTAATTT+AGG - chr3_1:6733167-6733186 Msa0346350:intron 15.0%
!!! AATTGATAGCATTTAATTTA+GGG - chr3_1:6733168-6733187 Msa0346350:intron 15.0%
!! ATAAACAATTATTCAAAAGA+AGG + chr3_1:6733459-6733478 None:intergenic 15.0%
!!! TCTTTTGAATAATTGTTTAT+TGG - chr3_1:6733459-6733478 Msa0346350:intron 15.0%
!!! CTTTTGAATAATTGTTTATT+GGG - chr3_1:6733460-6733479 Msa0346350:intron 15.0%
!!! ATAAAATTTGTGATAATGTT+TGG - chr3_1:6733560-6733579 Msa0346350:intron 15.0%
!!! TAAAATTTGTGATAATGTTT+GGG - chr3_1:6733561-6733580 Msa0346350:intron 15.0%
!!! AATTTCAAATAAGTTTTATC+TGG + chr3_1:6733641-6733660 None:intergenic 15.0%
!!! ATTTCAAATAAGTTTTATCT+TGG + chr3_1:6733640-6733659 None:intergenic 15.0%
!! CTAAAAAAAATTGCATTTAT+AGG + chr3_1:6734555-6734574 None:intergenic 15.0%
!!! TTTTCTTGTTTTTTATGTTA+GGG - chr3_1:6734672-6734691 Msa0346350:CDS 15.0%
!! TAAAATACATACTGAATTAT+GGG + chr3_1:6735078-6735097 None:intergenic 15.0%
!! ATAAAATACATACTGAATTA+TGG + chr3_1:6735079-6735098 None:intergenic 15.0%
!! TAAATCTTGATCAATTAATT+GGG - chr3_1:6735691-6735710 Msa0346350:intron 15.0%
!!! TATGTATAAATTTCCTTTTA+GGG - chr3_1:6735755-6735774 Msa0346350:intron 15.0%
!!! AATTTTCAAATATTCTTAGA+TGG - chr3_1:6736077-6736096 Msa0346350:intron 15.0%
!! TTTAGATCAAAATCAATTAA+CGG + chr3_1:6737132-6737151 None:intergenic 15.0%
!! TATATAATTTATACCTATTC+AGG - chr3_1:6739140-6739159 Msa0346350:intron 15.0%
!! ACATAAAAAATAGTATGATT+TGG + chr3_1:6739438-6739457 None:intergenic 15.0%
!! TCTAAAAATCACATAAAAAA+GGG + chr3_1:6739462-6739481 None:intergenic 15.0%
!!! TTATTTTATTGTATTTTACC+TGG - chr3_1:6739504-6739523 Msa0346350:intron 15.0%
!!! TGTTTGTTGTATAATGTAAA+AGG - chr3_1:6734059-6734078 Msa0346350:CDS 20.0%
!!! TTTAAAGTCATGTATTTGAT+TGG - chr3_1:6734181-6734200 Msa0346350:CDS 20.0%
!!! CTTTTCTTGTTTTTTATGTT+AGG - chr3_1:6734671-6734690 Msa0346350:CDS 20.0%
!!! TTTCTTGTTTTTTATGTTAG+GGG - chr3_1:6734673-6734692 Msa0346350:CDS 20.0%
!!! TTTAAAATGGTGTTATTACT+TGG - chr3_1:6734728-6734747 Msa0346350:intron 20.0%
!! TAAAATACTTCTGTAGTAAA+AGG - chr3_1:6735210-6735229 Msa0346350:CDS 20.0%
!! GAGAATAAAAAAAACAGTAT+TGG + chr3_1:6735586-6735605 None:intergenic 20.0%
!! CTAAATCTTGATCAATTAAT+TGG - chr3_1:6735690-6735709 Msa0346350:intron 20.0%
!!! GTATGTATAAATTTCCTTTT+AGG - chr3_1:6735754-6735773 Msa0346350:intron 20.0%
!!! TTTTTATGTTATGGGTTTTA+TGG - chr3_1:6735802-6735821 Msa0346350:intron 20.0%
!!! TTTTATGTTATGGGTTTTAT+GGG - chr3_1:6735803-6735822 Msa0346350:intron 20.0%
!!! TTTCTCTTTTGTTTTTCATT+TGG - chr3_1:6736555-6736574 Msa0346350:intron 20.0%
!! ATTACTGTAAGTAAATTTGT+TGG + chr3_1:6737185-6737204 None:intergenic 20.0%
!! ATTTACTTACAGTAATTGAA+AGG - chr3_1:6737189-6737208 Msa0346350:intron 20.0%
!! TAATTATATTCAATCCTATC+TGG - chr3_1:6737323-6737342 Msa0346350:intron 20.0%
!! TCTCATAATTCAATGAATTT+AGG + chr3_1:6737494-6737513 None:intergenic 20.0%
!! TCATAGTAAAAATAGTGATA+AGG - chr3_1:6737799-6737818 Msa0346350:intron 20.0%
!!! AGAAAAAACTTGATTCATTT+TGG - chr3_1:6738044-6738063 Msa0346350:intron 20.0%
!! ATCCATATGTTAGAAAAATT+AGG - chr3_1:6738149-6738168 Msa0346350:intron 20.0%
!! TCCATATGTTAGAAAAATTA+GGG - chr3_1:6738150-6738169 Msa0346350:intron 20.0%
!! AACCACTAAACAAAAATAAA+AGG + chr3_1:6738359-6738378 None:intergenic 20.0%
!! CTTCTAGATATAAAATTGTA+TGG + chr3_1:6738504-6738523 None:intergenic 20.0%
!!! CTCTAAAAATCACATAAAAA+AGG + chr3_1:6739463-6739482 None:intergenic 20.0%
!!! ATAAAGTTGATTGACATTTT+GGG - chr3_1:6739570-6739589 Msa0346350:intron 20.0%
!!! TCAATTTTATAAAACACATG+TGG - chr3_1:6739764-6739783 Msa0346350:intron 20.0%
!! TGGATTATTAAAATAACATG+AGG - chr3_1:6739784-6739803 Msa0346350:intron 20.0%
!! ATTATTAAAATAACATGAGG+TGG - chr3_1:6739787-6739806 Msa0346350:intron 20.0%
!! TTATTAAAATAACATGAGGT+GGG - chr3_1:6739788-6739807 Msa0346350:intron 20.0%
!!! TAATTTTAGTCAACTATACT+CGG - chr3_1:6740072-6740091 Msa0346350:CDS 20.0%
!!! GCAATTTGAAATTATGATTT+GGG + chr3_1:6740475-6740494 None:intergenic 20.0%
!!! AGCAATTTGAAATTATGATT+TGG + chr3_1:6740476-6740495 None:intergenic 20.0%
!!! GGTTTTATGCATTTAGAAAT+GGG + chr3_1:6732660-6732679 None:intergenic 25.0%
! AGAAGATGAAGAAATGAAAT+GGG + chr3_1:6732706-6732725 None:intergenic 25.0%
! AAGAAGATGAAGAAATGAAA+TGG + chr3_1:6732707-6732726 None:intergenic 25.0%
!! ATAGCATTTAATTTAGGGTT+AGG - chr3_1:6733173-6733192 Msa0346350:intron 25.0%
! ATTTATACGAACTGTAGATT+AGG - chr3_1:6733200-6733219 Msa0346350:intron 25.0%
! TTTATACGAACTGTAGATTA+GGG - chr3_1:6733201-6733220 Msa0346350:intron 25.0%
! ACTTGTTTGAATTTATCTAC+TGG - chr3_1:6733536-6733555 Msa0346350:intron 25.0%
!! TTTGTCTTTTCCAATAGAAA+TGG - chr3_1:6733802-6733821 Msa0346350:CDS 25.0%
! ATAAGTTGTTTATCCAAACA+GGG - chr3_1:6733858-6733877 Msa0346350:CDS 25.0%
! ATAAAGTAGTCAGTTACAAT+TGG + chr3_1:6733963-6733982 None:intergenic 25.0%
! ACTGACTACTTTATAATGAA+AGG - chr3_1:6733969-6733988 Msa0346350:intron 25.0%
!!! TTTTCATGTGATTTGTTTGA+AGG - chr3_1:6734026-6734045 Msa0346350:intron 25.0%
! GCAAAGAAAACAAATAATAC+AGG + chr3_1:6734288-6734307 None:intergenic 25.0%
! ATGTATCAGTAAACAATGAT+GGG + chr3_1:6734628-6734647 None:intergenic 25.0%
! TATGTATCAGTAAACAATGA+TGG + chr3_1:6734629-6734648 None:intergenic 25.0%
!!! CTTACTGGTGATTTTTAAAA+TGG - chr3_1:6734715-6734734 Msa0346350:intron 25.0%
! AAATTGTACAGAAAATGTCT+GGG - chr3_1:6734803-6734822 Msa0346350:CDS 25.0%
! AACAACAATCACATTTGATT+GGG + chr3_1:6734941-6734960 None:intergenic 25.0%
! AAACAACAATCACATTTGAT+TGG + chr3_1:6734942-6734961 None:intergenic 25.0%
!!! ATCAAATGTGATTGTTGTTT+TGG - chr3_1:6734942-6734961 Msa0346350:CDS 25.0%
!! TTTAGTCTATTCAGTGTTTT+TGG - chr3_1:6735106-6735125 Msa0346350:CDS 25.0%
!! TTAGTCTATTCAGTGTTTTT+GGG - chr3_1:6735107-6735126 Msa0346350:CDS 25.0%
!! ATTTTATTCTTTTCTCCTGA+TGG - chr3_1:6735349-6735368 Msa0346350:CDS 25.0%
! TGTAATATTGAGACATTCAA+TGG - chr3_1:6735431-6735450 Msa0346350:CDS 25.0%
!! CAAGATTTAGAACTAGATAA+CGG + chr3_1:6735680-6735699 None:intergenic 25.0%
! TTCAAAGAAATACATGATAC+AGG + chr3_1:6735943-6735962 None:intergenic 25.0%
! TAATGTTCCAATATCTTGAA+TGG - chr3_1:6736100-6736119 Msa0346350:intron 25.0%
! AATGTTCCAATATCTTGAAT+GGG - chr3_1:6736101-6736120 Msa0346350:intron 25.0%
! CTTGTATAATCACTATAACA+AGG + chr3_1:6736147-6736166 None:intergenic 25.0%
!! CTTGTTATAGTGATTATACA+AGG - chr3_1:6736145-6736164 Msa0346350:CDS 25.0%
!! AACTTAGCAATGTGATATTT+TGG - chr3_1:6736703-6736722 Msa0346350:intron 25.0%
!! ACTTAGCAATGTGATATTTT+GGG - chr3_1:6736704-6736723 Msa0346350:intron 25.0%
!!! ATTGAAATAAGCTCGTTTTT+GGG + chr3_1:6736980-6736999 None:intergenic 25.0%
!! TATTGAAATAAGCTCGTTTT+TGG + chr3_1:6736981-6737000 None:intergenic 25.0%
! TTTGATCTAAACTTTGATGT+AGG - chr3_1:6737141-6737160 Msa0346350:intron 25.0%
! ACACACTTATAACATATCTT+TGG - chr3_1:6737903-6737922 Msa0346350:intron 25.0%
! ATTCATGGTGTAGATTATTA+TGG - chr3_1:6737929-6737948 Msa0346350:intron 25.0%
!! TCCCTAATTTTTCTAACATA+TGG + chr3_1:6738154-6738173 None:intergenic 25.0%
! AAAATTAGGGATGAAAAGTA+TGG - chr3_1:6738163-6738182 Msa0346350:intron 25.0%
! TGGAATTAACATCAAAATTG+CGG - chr3_1:6738284-6738303 Msa0346350:intron 25.0%
!!! AGCCTTTTATTTTTGTTTAG+TGG - chr3_1:6738354-6738373 Msa0346350:intron 25.0%
!!! CACATGTTTTGAAAACATTT+TGG - chr3_1:6738568-6738587 Msa0346350:intron 25.0%
! GCTTGTAAAATCCTATATTA+AGG + chr3_1:6738605-6738624 None:intergenic 25.0%
!!! TACAATTAAAAGCCTTATTG+AGG - chr3_1:6739105-6739124 Msa0346350:intron 25.0%
! AAGGGAACATATATAAACAA+GGG + chr3_1:6739362-6739381 None:intergenic 25.0%
! AAAGGGAACATATATAAACA+AGG + chr3_1:6739363-6739382 None:intergenic 25.0%
!! TGTTTATATATGTTCCCTTT+TGG - chr3_1:6739363-6739382 Msa0346350:intron 25.0%
!! TGTTTATATATGTTCCCTTT+TGG - chr3_1:6739363-6739382 Msa0346350:intron 25.0%
! CAAAATGTCAATCAACTTTA+TGG + chr3_1:6739571-6739590 None:intergenic 25.0%
!!! CATAAAGTTGATTGACATTT+TGG - chr3_1:6739569-6739588 Msa0346350:intron 25.0%
! GAGTAAAAGATTATGCATAT+AGG + chr3_1:6739664-6739683 None:intergenic 25.0%
!!! AGTATTTCTATTTTCTACTG+TGG - chr3_1:6739811-6739830 Msa0346350:intron 25.0%
!!! TCAATATGTTAGATAATGGA+TGG + chr3_1:6739877-6739896 None:intergenic 25.0%
! CAACTCAATATGTTAGATAA+TGG + chr3_1:6739881-6739900 None:intergenic 25.0%
! TTAAACTAATTTCCTAATCG+TGG - chr3_1:6739935-6739954 Msa0346350:intron 25.0%
! CTGTAATCTAGTTGTAATAA+TGG - chr3_1:6740101-6740120 Msa0346350:CDS 25.0%
! TAATCTAGTTGTAATAATGG+AGG - chr3_1:6740104-6740123 Msa0346350:CDS 25.0%
! TTCTAATGTTACAACATCTA+TGG + chr3_1:6740151-6740170 None:intergenic 25.0%
!! GGGTTTTATGCATTTAGAAA+TGG + chr3_1:6732661-6732680 None:intergenic 30.0%
! ATGAAGAAATGAAATGGGTT+TGG + chr3_1:6732701-6732720 None:intergenic 30.0%
! GTGCAAGAAATTTTAGATTG+CGG - chr3_1:6733302-6733321 Msa0346350:intron 30.0%
AGCCATTGTTTATAGTCATA+AGG - chr3_1:6733500-6733519 Msa0346350:intron 30.0%
TCTGGAGAATTTATGAGATT+AGG + chr3_1:6733623-6733642 None:intergenic 30.0%
!! GTTGTTTTCATATGCTATCT+TGG + chr3_1:6733750-6733769 None:intergenic 30.0%
TATGCATAAGCCATTTCTAT+TGG + chr3_1:6733815-6733834 None:intergenic 30.0%
GATAAGTTGTTTATCCAAAC+AGG - chr3_1:6733857-6733876 Msa0346350:CDS 30.0%
TAAGTTGTTTATCCAAACAG+GGG - chr3_1:6733859-6733878 Msa0346350:CDS 30.0%
TAAATGAAATTGTGTGCCTA+TGG - chr3_1:6733904-6733923 Msa0346350:CDS 30.0%
! TCATGTATTTGATTGGTTGT+TGG - chr3_1:6734188-6734207 Msa0346350:CDS 30.0%
AACATAGTTTCTGATGCATA+GGG + chr3_1:6734320-6734339 None:intergenic 30.0%
TAACATAGTTTCTGATGCAT+AGG + chr3_1:6734321-6734340 None:intergenic 30.0%
GAAATTGTACAGAAAATGTC+TGG - chr3_1:6734802-6734821 Msa0346350:CDS 30.0%
!! TAGTCTATTCAGTGTTTTTG+GGG - chr3_1:6735108-6735127 Msa0346350:CDS 30.0%
GAAAGAACTAAAAATGACAC+CGG + chr3_1:6735175-6735194 None:intergenic 30.0%
TAAAAGGTTACTTCTTCAGA+CGG - chr3_1:6735226-6735245 Msa0346350:CDS 30.0%
! GAAATAATTTGACTTCCATC+AGG + chr3_1:6735367-6735386 None:intergenic 30.0%
!!! TCAGTTTTGAATGACAAGAA+TGG + chr3_1:6735389-6735408 None:intergenic 30.0%
CTTGATCAATTAATTGGGAA+AGG - chr3_1:6735696-6735715 Msa0346350:intron 30.0%
ATAATTTACGTCACCCTAAA+AGG + chr3_1:6735771-6735790 None:intergenic 30.0%
ACAACTAATCTCTTCAATGA+AGG - chr3_1:6735968-6735987 Msa0346350:intron 30.0%
GGTTATTGACAAACGAAATA+TGG - chr3_1:6735989-6736008 Msa0346350:intron 30.0%
ATCTTGCACTCTTAGTATAT+TGG + chr3_1:6736023-6736042 None:intergenic 30.0%
TTTATCACCATAGGAGAATT+GGG + chr3_1:6736276-6736295 None:intergenic 30.0%
ATTTATCACCATAGGAGAAT+TGG + chr3_1:6736277-6736296 None:intergenic 30.0%
ATTCTCCTATGGTGATAAAT+AGG - chr3_1:6736277-6736296 Msa0346350:intron 30.0%
ATATGCCTATTTATCACCAT+AGG + chr3_1:6736285-6736304 None:intergenic 30.0%
TATGGTGATAAATAGGCATA+TGG - chr3_1:6736284-6736303 Msa0346350:intron 30.0%
AAGTGGCAAATTGACATAAT+GGG + chr3_1:6736430-6736449 None:intergenic 30.0%
CACATTATCTGTTTACTTTG+AGG - chr3_1:6736503-6736522 Msa0346350:intron 30.0%
!! CTTTTGACTATCATTCATCT+AGG + chr3_1:6736613-6736632 None:intergenic 30.0%
CTAGATGAATGATAGTCAAA+AGG - chr3_1:6736611-6736630 Msa0346350:intron 30.0%
! CTTAGCAATGTGATATTTTG+GGG - chr3_1:6736705-6736724 Msa0346350:intron 30.0%
CTTGTGAATTATTTCAGAGA+GGG - chr3_1:6736749-6736768 Msa0346350:intron 30.0%
TTGTGAATTATTTCAGAGAG+GGG - chr3_1:6736750-6736769 Msa0346350:intron 30.0%
GAGCTAAGAAAAAACGTAAA+AGG + chr3_1:6736865-6736884 None:intergenic 30.0%
ATTGCAACATCATTCATCAA+TGG + chr3_1:6736913-6736932 None:intergenic 30.0%
TCAATTGAAATTTCAGCAGT+GGG + chr3_1:6737037-6737056 None:intergenic 30.0%
TAAAAGATTATGTGCCAGAT+AGG + chr3_1:6737340-6737359 None:intergenic 30.0%
! TATCTGGCACATAATCTTTT+AGG - chr3_1:6737339-6737358 Msa0346350:intron 30.0%
!!! TTTTTGCTTGATTTGCAAAG+TGG - chr3_1:6737395-6737414 Msa0346350:intron 30.0%
ATATCTTCTTGTATCCTTCT+AGG + chr3_1:6737704-6737723 None:intergenic 30.0%
GATACAAGAAGATATTCATC+AGG - chr3_1:6737709-6737728 Msa0346350:intron 30.0%
CACTTATAACATATCTTTGG+CGG - chr3_1:6737906-6737925 Msa0346350:intron 30.0%
GGAATTAACATCAAAATTGC+GGG - chr3_1:6738285-6738304 Msa0346350:intron 30.0%
! GTTTTCAAAACATGTGATCA+CGG + chr3_1:6738564-6738583 None:intergenic 30.0%
TCTCTTGTCTACCTTAATAT+AGG - chr3_1:6738591-6738610 Msa0346350:intron 30.0%
AAATATATGCTGCTGTCTAT+GGG - chr3_1:6738689-6738708 Msa0346350:CDS 30.0%
GACTTTGTGCAGAAATATAT+TGG + chr3_1:6738759-6738778 None:intergenic 30.0%
ATTTCTGCACAAAGTCATTA+TGG - chr3_1:6738763-6738782 Msa0346350:intron 30.0%
GAAGAAAGAAAATGGAGAAT+GGG + chr3_1:6738804-6738823 None:intergenic 30.0%
!! TTGATTTGGAGATACCAAAA+GGG + chr3_1:6739380-6739399 None:intergenic 30.0%
!! TTTGATTTGGAGATACCAAA+AGG + chr3_1:6739381-6739400 None:intergenic 30.0%
! ATGATTTGGAGATACCAAAA+GGG + chr3_1:6739424-6739443 None:intergenic 30.0%
! TATGATTTGGAGATACCAAA+AGG + chr3_1:6739425-6739444 None:intergenic 30.0%
AAAACCAAAACCAATTCTAC+TGG + chr3_1:6739602-6739621 None:intergenic 30.0%
!!! AGTAGAATTGGTTTTGGTTT+TGG - chr3_1:6739601-6739620 Msa0346350:intron 30.0%
!!! TTTTGGAACTGTTCTAACTT+GGG - chr3_1:6739618-6739637 Msa0346350:intron 30.0%
AAGATTATGCATATAGGCAA+AGG + chr3_1:6739658-6739677 None:intergenic 30.0%
AAGTTACTGTCATAGACTAT+CGG - chr3_1:6739992-6740011 Msa0346350:intron 30.0%
AAAAATAAGATATAGCAGCC+AGG + chr3_1:6740195-6740214 None:intergenic 30.0%
CCAACATAATTTCTTAACCA+TGG + chr3_1:6740376-6740395 None:intergenic 30.0%
CCATGGTTAAGAAATTATGT+TGG - chr3_1:6740373-6740392 Msa0346350:five_prime_UTR 30.0%
!!! TGGTTTTGATTTGAGGGTTT+GGG + chr3_1:6732681-6732700 None:intergenic 35.0%
!!! TTGGTTTTGATTTGAGGGTT+TGG + chr3_1:6732682-6732701 None:intergenic 35.0%
!!! TGGGTTTGGTTTTGATTTGA+GGG + chr3_1:6732687-6732706 None:intergenic 35.0%
!!! ATGGGTTTGGTTTTGATTTG+AGG + chr3_1:6732688-6732707 None:intergenic 35.0%
TTCTCTTATCTCCATTCCTA+GGG - chr3_1:6732725-6732744 Msa0346350:three_prime_UTR 35.0%
GTTTCCATTCATCTCTTCAA+TGG - chr3_1:6732747-6732766 Msa0346350:three_prime_UTR 35.0%
CTTCTAGATCTCTTATACAG+CGG + chr3_1:6733072-6733091 None:intergenic 35.0%
GCTGTATAAGAGATCTAGAA+GGG - chr3_1:6733071-6733090 Msa0346350:three_prime_UTR 35.0%
CTGTATAAGAGATCTAGAAG+GGG - chr3_1:6733072-6733091 Msa0346350:three_prime_UTR 35.0%
TTATGCAATTACCTGTCGTT+AGG + chr3_1:6733111-6733130 None:intergenic 35.0%
GTGCAAGAACATTTAGATTG+CGG - chr3_1:6733248-6733267 Msa0346350:intron 35.0%
! GGCCTTATGACTATAAACAA+TGG + chr3_1:6733505-6733524 None:intergenic 35.0%
TTATAGTCATAAGGCCTGTT+TGG - chr3_1:6733509-6733528 Msa0346350:intron 35.0%
TCAAACAAGTCAATCCAAAC+AGG + chr3_1:6733526-6733545 None:intergenic 35.0%
CAGAAACCATAAAAGTCCAT+AGG + chr3_1:6733923-6733942 None:intergenic 35.0%
CACTGTTACTCAATCTTATC+TGG - chr3_1:6734120-6734139 Msa0346350:CDS 35.0%
TGTTACTCAATCTTATCTGG+CGG - chr3_1:6734123-6734142 Msa0346350:CDS 35.0%
! TGGCGGATCATTAAAAACAT+TGG - chr3_1:6734140-6734159 Msa0346350:CDS 35.0%
TTTCTGATGCATAGGGTAAA+TGG + chr3_1:6734313-6734332 None:intergenic 35.0%
ATAACAAAGCAATTGGAGGA+GGG + chr3_1:6734351-6734370 None:intergenic 35.0%
TACGCACATAACAAAGCAAT+TGG + chr3_1:6734358-6734377 None:intergenic 35.0%
! CTTTGTTATGTGCGTAAAAC+AGG - chr3_1:6734362-6734381 Msa0346350:intron 35.0%
TTATGTGCGTAAAACAGGTT+TGG - chr3_1:6734367-6734386 Msa0346350:intron 35.0%
GGATATCAAAACGGAATTTC+TGG - chr3_1:6734484-6734503 Msa0346350:intron 35.0%
! GTGTTGCATTTGTTACTTAC+TGG - chr3_1:6734700-6734719 Msa0346350:intron 35.0%
GAGCAAATCTTGCTTGTAAA+TGG + chr3_1:6734836-6734855 None:intergenic 35.0%
CACTAACTAACACTTGCTTA+GGG + chr3_1:6734864-6734883 None:intergenic 35.0%
CTAAGCAAGTGTTAGTTAGT+GGG - chr3_1:6734863-6734882 Msa0346350:CDS 35.0%
! AAGTGTTAGTTAGTGGGTAT+AGG - chr3_1:6734869-6734888 Msa0346350:CDS 35.0%
TAAATACCAAACAACAGCCA+GGG + chr3_1:6735644-6735663 None:intergenic 35.0%
ATAAATACCAAACAACAGCC+AGG + chr3_1:6735645-6735664 None:intergenic 35.0%
!!! TGGGTTTTATTTTGCAGATC+TGG - chr3_1:6735822-6735841 Msa0346350:intron 35.0%
AAGAAATACATGATACAGGC+AGG + chr3_1:6735939-6735958 None:intergenic 35.0%
TCCATAATCTCATCTCAAAG+CGG + chr3_1:6736210-6736229 None:intergenic 35.0%
GATGAGATTATGGATGTTCT+TGG - chr3_1:6736216-6736235 Msa0346350:intron 35.0%
TTATCACCATAGGAGAATTG+GGG + chr3_1:6736275-6736294 None:intergenic 35.0%
! AGTTGTTGTTAAGAAGACTG+AGG - chr3_1:6736365-6736384 Msa0346350:intron 35.0%
! GTTGTTGTTAAGAAGACTGA+GGG - chr3_1:6736366-6736385 Msa0346350:intron 35.0%
! TTGTTGTTAAGAAGACTGAG+GGG - chr3_1:6736367-6736386 Msa0346350:intron 35.0%
AGTGGCAAATTGACATAATG+GGG + chr3_1:6736429-6736448 None:intergenic 35.0%
GAAGTGGCAAATTGACATAA+TGG + chr3_1:6736431-6736450 None:intergenic 35.0%
TTGGGATTGTTTGAAAGAAG+TGG + chr3_1:6736447-6736466 None:intergenic 35.0%
AACAATCCCAAAGTCTTCTT+TGG - chr3_1:6736456-6736475 Msa0346350:intron 35.0%
! CTGTTTACTTTGAGGAAGAT+TGG - chr3_1:6736511-6736530 Msa0346350:intron 35.0%
AGTCAAAAGGTTAGAGATAG+AGG - chr3_1:6736624-6736643 Msa0346350:intron 35.0%
GTCAAAAGGTTAGAGATAGA+GGG - chr3_1:6736625-6736644 Msa0346350:intron 35.0%
GCTTGTGAATTATTTCAGAG+AGG - chr3_1:6736748-6736767 Msa0346350:intron 35.0%
! TATACTCTGACTTGTACTCT+TGG + chr3_1:6736951-6736970 None:intergenic 35.0%
AGCTTATTTCAATACCCACA+AGG - chr3_1:6736987-6737006 Msa0346350:intron 35.0%
GTCAATTGAAATTTCAGCAG+TGG + chr3_1:6737038-6737057 None:intergenic 35.0%
ACCATTCATCAACGTAAAGA+GGG + chr3_1:6737261-6737280 None:intergenic 35.0%
TACCATTCATCAACGTAAAG+AGG + chr3_1:6737262-6737281 None:intergenic 35.0%
TGAATGGTAGAGAAATAGTC+AGG - chr3_1:6737273-6737292 Msa0346350:intron 35.0%
AAACACACATAAAGTGAGAG+AGG + chr3_1:6737445-6737464 None:intergenic 35.0%
! TATGATTTGTGCAGAAATCC+AGG - chr3_1:6737524-6737543 Msa0346350:intron 35.0%
AGAAGATATTCATCAGGTTC+AGG - chr3_1:6737715-6737734 Msa0346350:intron 35.0%
GTAAGCTTGACAAGGAAAAA+GGG - chr3_1:6737747-6737766 Msa0346350:intron 35.0%
CCTTAATAGATGTTAAGCCA+CGG + chr3_1:6737859-6737878 None:intergenic 35.0%
CGTGGCTTAACATCTATTAA+GGG - chr3_1:6737857-6737876 Msa0346350:intron 35.0%
AACATCTATTAAGGGCTTAG+AGG - chr3_1:6737865-6737884 Msa0346350:intron 35.0%
ACATCTATTAAGGGCTTAGA+GGG - chr3_1:6737866-6737885 Msa0346350:intron 35.0%
!! TTGATTCATTTTGGCAGAGA+AGG - chr3_1:6738053-6738072 Msa0346350:intron 35.0%
! TTAGGGATGAAAAGTATGGT+TGG - chr3_1:6738167-6738186 Msa0346350:intron 35.0%
! GAAAAGTATGGTTGGAAGTA+TGG - chr3_1:6738175-6738194 Msa0346350:intron 35.0%
! AAAAAGCTTTGTGCAACTCT+TGG + chr3_1:6738209-6738228 None:intergenic 35.0%
TTAATTCCAACACAAGCTCT+GGG + chr3_1:6738273-6738292 None:intergenic 35.0%
TTAGTGGTTAATCTTGCAAG+TGG - chr3_1:6738370-6738389 Msa0346350:intron 35.0%
AGACAGCAGCATATATTTCA+AGG + chr3_1:6738687-6738706 None:intergenic 35.0%
GAAATATATGCTGCTGTCTA+TGG - chr3_1:6738688-6738707 Msa0346350:CDS 35.0%
AATATATGCTGCTGTCTATG+GGG - chr3_1:6738690-6738709 Msa0346350:CDS 35.0%
GAGCATGATGTTTCACAATT+GGG - chr3_1:6738717-6738736 Msa0346350:CDS 35.0%
GGAAGAAAGAAAATGGAGAA+TGG + chr3_1:6738805-6738824 None:intergenic 35.0%
TAGAGAGGGAAGAAAGAAAA+TGG + chr3_1:6738812-6738831 None:intergenic 35.0%
CTTTCTTCCCTCTCTATTTA+AGG - chr3_1:6738816-6738835 Msa0346350:intron 35.0%
CATCGAACATTGTTTCATCA+CGG + chr3_1:6738978-6738997 None:intergenic 35.0%
GAAACAATGTTCGATGCATA+TGG - chr3_1:6738982-6739001 Msa0346350:intron 35.0%
AAGTAAAAGAGAAACCAACC+CGG + chr3_1:6739073-6739092 None:intergenic 35.0%
GTCAATCAACTTTATGGAAC+TGG + chr3_1:6739565-6739584 None:intergenic 35.0%
!!! GTTTTGGAACTGTTCTAACT+TGG - chr3_1:6739617-6739636 Msa0346350:intron 35.0%
GTATGTGATTGACTGTTTAG+TGG - chr3_1:6739907-6739926 Msa0346350:intron 35.0%
TGACAGTAACTTCTTCTTCT+GGG + chr3_1:6739984-6740003 None:intergenic 35.0%
ATGACAGTAACTTCTTCTTC+TGG + chr3_1:6739985-6740004 None:intergenic 35.0%
! ACGAAAACCTTTTTCTGTTC+CGG + chr3_1:6740279-6740298 None:intergenic 35.0%
TGTTGTGGATAATCAAACCA+TGG - chr3_1:6740356-6740375 Msa0346350:exon 35.0%
!! AATTATGTTGGCCTTGTATC+AGG - chr3_1:6740385-6740404 Msa0346350:five_prime_UTR 35.0%
CTTCTCTTATCTCCATTCCT+AGG - chr3_1:6732724-6732743 Msa0346350:three_prime_UTR 40.0%
ATGAATGGAAACCCTAGGAA+TGG + chr3_1:6732739-6732758 None:intergenic 40.0%
AAGAGATGAATGGAAACCCT+AGG + chr3_1:6732744-6732763 None:intergenic 40.0%
CGCTGTATAAGAGATCTAGA+AGG - chr3_1:6733070-6733089 Msa0346350:three_prime_UTR 40.0%
ATATAACTTCTGCCCCTGTT+TGG + chr3_1:6733874-6733893 None:intergenic 40.0%
! TGTGTGCCTATGGACTTTTA+TGG - chr3_1:6733914-6733933 Msa0346350:CDS 40.0%
CATAACAAAGCAATTGGAGG+AGG + chr3_1:6734352-6734371 None:intergenic 40.0%
GCACATAACAAAGCAATTGG+AGG + chr3_1:6734355-6734374 None:intergenic 40.0%
CCACTAACTAACACTTGCTT+AGG + chr3_1:6734865-6734884 None:intergenic 40.0%
CCTAAGCAAGTGTTAGTTAG+TGG - chr3_1:6734862-6734881 Msa0346350:CDS 40.0%
GACAGTATGTTTCACACATC+TGG + chr3_1:6735014-6735033 None:intergenic 40.0%
!!! CTATTCAGTGTTTTTGGGGT+TGG - chr3_1:6735112-6735131 Msa0346350:CDS 40.0%
! TTGAGGTAGCGATTTGAGAT+TGG - chr3_1:6735139-6735158 Msa0346350:CDS 40.0%
AAACCACTGAACAGCAAACA+AGG + chr3_1:6735518-6735537 None:intergenic 40.0%
! TTGCTGTTCAGTGGTTTAAG+TGG - chr3_1:6735521-6735540 Msa0346350:CDS 40.0%
TGCTGTTCAGTGGTTTAAGT+GGG - chr3_1:6735522-6735541 Msa0346350:CDS 40.0%
TTCAGTGGTTTAAGTGGGTA+TGG - chr3_1:6735527-6735546 Msa0346350:CDS 40.0%
TGGTTTAAGAATGCCATGCA+GGG + chr3_1:6735566-6735585 None:intergenic 40.0%
TTGGTTTAAGAATGCCATGC+AGG + chr3_1:6735567-6735586 None:intergenic 40.0%
AAATACCAAACAACAGCCAG+GGG + chr3_1:6735643-6735662 None:intergenic 40.0%
GTTATGCAGATTTGCCAAGT+GGG - chr3_1:6735857-6735876 Msa0346350:intron 40.0%
TTATGCAGATTTGCCAAGTG+GGG - chr3_1:6735858-6735877 Msa0346350:intron 40.0%
GTTCCAATATCTTGAATGGG+TGG - chr3_1:6736104-6736123 Msa0346350:intron 40.0%
AAGCCACCCATTCAAGATAT+TGG + chr3_1:6736110-6736129 None:intergenic 40.0%
AGTAGCACTCAACAAAGATC+TGG + chr3_1:6736177-6736196 None:intergenic 40.0%
!! ACCGCTTTGAGATGAGATTA+TGG - chr3_1:6736206-6736225 Msa0346350:intron 40.0%
GAGATTATGGATGTTCTTGG+AGG - chr3_1:6736219-6736238 Msa0346350:intron 40.0%
AGATAATGTGATAAAGCCCC+AGG + chr3_1:6736493-6736512 None:intergenic 40.0%
!! CTTTGAGGAAGATTGGTTTC+AGG - chr3_1:6736518-6736537 Msa0346350:intron 40.0%
!! AAGATTGGTTTCAGGCTCTA+TGG - chr3_1:6736526-6736545 Msa0346350:intron 40.0%
AAAAGGTTAGAGATAGAGGG+AGG - chr3_1:6736628-6736647 Msa0346350:intron 40.0%
! CCACAGAAATCCTGATTTGT+GGG - chr3_1:6736651-6736670 Msa0346350:intron 40.0%
! AATCCTGATTTGTGGGATGA+TGG - chr3_1:6736658-6736677 Msa0346350:intron 40.0%
GTCCTATAAGCAATTCATCC+AGG - chr3_1:6736778-6736797 Msa0346350:intron 40.0%
CTCCTGGATGAATTGCTTAT+AGG + chr3_1:6736783-6736802 None:intergenic 40.0%
GTATATCATCTTCAAGCTCC+TGG + chr3_1:6736799-6736818 None:intergenic 40.0%
TTTCAATACCCACAAGGATG+CGG - chr3_1:6736993-6737012 Msa0346350:intron 40.0%
! TCCCTCTTTACGTTGATGAA+TGG - chr3_1:6737257-6737276 Msa0346350:CDS 40.0%
! CTGGCACATAATCTTTTAGG+AGG - chr3_1:6737342-6737361 Msa0346350:intron 40.0%
GAATGAAAATGCTCGACGTT+TGG - chr3_1:6737364-6737383 Msa0346350:intron 40.0%
AATGAATTTAGGCAAGCGTG+AGG + chr3_1:6737483-6737502 None:intergenic 40.0%
TCTGTTTCCTCCTCTGAATT+GGG + chr3_1:6737590-6737609 None:intergenic 40.0%
ATCTGTTTCCTCCTCTGAAT+TGG + chr3_1:6737591-6737610 None:intergenic 40.0%
TTCTAGGTTCAGAACTGACA+GGG + chr3_1:6737688-6737707 None:intergenic 40.0%
TGTTGTTCGTAAGCTTGACA+AGG - chr3_1:6737739-6737758 Msa0346350:intron 40.0%
CGTAAGCTTGACAAGGAAAA+AGG - chr3_1:6737746-6737765 Msa0346350:intron 40.0%
AGCCACGGATAATTACTACA+GGG + chr3_1:6737844-6737863 None:intergenic 40.0%
AAGCCACGGATAATTACTAC+AGG + chr3_1:6737845-6737864 None:intergenic 40.0%
CCGTGGCTTAACATCTATTA+AGG - chr3_1:6737856-6737875 Msa0346350:intron 40.0%
!! ACATATCTTTGGCGGATTCA+TGG - chr3_1:6737914-6737933 Msa0346350:intron 40.0%
! CTAGTGATGCCAAAGGTTTT+AGG - chr3_1:6737963-6737982 Msa0346350:intron 40.0%
TCTCACATGCCTAAAACCTT+TGG + chr3_1:6737975-6737994 None:intergenic 40.0%
GCATGAAGAAACAGCTAAGT+CGG - chr3_1:6738009-6738028 Msa0346350:intron 40.0%
CATGAAGAAACAGCTAAGTC+GGG - chr3_1:6738010-6738029 Msa0346350:intron 40.0%
ATGAAGAAACAGCTAAGTCG+GGG - chr3_1:6738011-6738030 Msa0346350:intron 40.0%
!! TTCATTTTGGCAGAGAAGGT+TGG - chr3_1:6738057-6738076 Msa0346350:intron 40.0%
TTTGCAGTCCTTACTTCCAA+GGG + chr3_1:6738094-6738113 None:intergenic 40.0%
GTTAATTCCAACACAAGCTC+TGG + chr3_1:6738274-6738293 None:intergenic 40.0%
CATCAGGATCACTACAATGA+AGG + chr3_1:6738425-6738444 None:intergenic 40.0%
TACAAGCAACTTTGCAGATG+TGG - chr3_1:6738618-6738637 Msa0346350:intron 40.0%
GGAGCATGATGTTTCACAAT+TGG - chr3_1:6738716-6738735 Msa0346350:CDS 40.0%
GGCTTGTCCTTAAATAGAGA+GGG + chr3_1:6738826-6738845 None:intergenic 40.0%
AGGCTTGTCCTTAAATAGAG+AGG + chr3_1:6738827-6738846 None:intergenic 40.0%
TCCAGTAACCTTCGCTTTAA+AGG + chr3_1:6738847-6738866 None:intergenic 40.0%
TTAAAGCGAAGGTTACTGGA+AGG - chr3_1:6738847-6738866 Msa0346350:intron 40.0%
TCCCACGATCATCTTTCAAT+CGG + chr3_1:6738873-6738892 None:intergenic 40.0%
TGAAAGATGATCGTGGGAAT+CGG - chr3_1:6738875-6738894 Msa0346350:intron 40.0%
GATAGGAGTGACAGAACAAA+TGG - chr3_1:6738907-6738926 Msa0346350:intron 40.0%
ACAATGTTCGATGCATATGG+TGG - chr3_1:6738985-6739004 Msa0346350:intron 40.0%
! TCTGAGTTGAATGATACAGC+AGG + chr3_1:6739012-6739031 None:intergenic 40.0%
!! AAAGCCTTATTGAGGTTTGC+TGG - chr3_1:6739113-6739132 Msa0346350:intron 40.0%
TTTATACCTATTCAGGCCTC+TGG - chr3_1:6739147-6739166 Msa0346350:intron 40.0%
TTATACCTATTCAGGCCTCT+GGG - chr3_1:6739148-6739167 Msa0346350:intron 40.0%
AAGTTGCGATGCAGATGTTT+AGG - chr3_1:6739194-6739213 Msa0346350:intron 40.0%
AGTTGCGATGCAGATGTTTA+GGG - chr3_1:6739195-6739214 Msa0346350:intron 40.0%
ATGCAGATGTTTAGGGATCA+AGG - chr3_1:6739202-6739221 Msa0346350:intron 40.0%
!! CTCTCCAGTAGAATTGGTTT+TGG - chr3_1:6739595-6739614 Msa0346350:intron 40.0%
! TTGATAACTGCACCACGATT+AGG + chr3_1:6739950-6739969 None:intergenic 40.0%
GACAGTAACTTCTTCTTCTG+GGG + chr3_1:6739983-6740002 None:intergenic 40.0%
TTGGCTCATTGAGATTGGAT+TGG - chr3_1:6740035-6740054 Msa0346350:CDS 40.0%
TCAATCAAAAACTACCTCCC+CGG - chr3_1:6740257-6740276 Msa0346350:CDS 40.0%
! GAAAACCTTTTTCTGTTCCG+GGG + chr3_1:6740277-6740296 None:intergenic 40.0%
! CGAAAACCTTTTTCTGTTCC+GGG + chr3_1:6740278-6740297 None:intergenic 40.0%
! GGAACAGAAAAAGGTTTTCG+TGG - chr3_1:6740278-6740297 Msa0346350:CDS 40.0%
TATATTCCGATCCCACTTAG+TGG - chr3_1:6740311-6740330 Msa0346350:CDS 40.0%
ATATTCCGATCCCACTTAGT+GGG - chr3_1:6740312-6740331 Msa0346350:CDS 40.0%
ACAGGAAAAGACCTGATACA+AGG + chr3_1:6740399-6740418 None:intergenic 40.0%
!! AGGTCTTTTCCTGTTGTTTG+TGG - chr3_1:6740405-6740424 Msa0346350:five_prime_UTR 40.0%
TTGACCTGGATTAAAAACCC+AGG + chr3_1:6740441-6740460 None:intergenic 40.0%
TCGGCCATTGAAGAGATGAA+TGG + chr3_1:6732754-6732773 None:intergenic 45.0%
CTAGATCTCTTATACAGCGG+AGG + chr3_1:6733069-6733088 None:intergenic 45.0%
TACCTGTCGTTAGGTCTATG+AGG + chr3_1:6733102-6733121 None:intergenic 45.0%
TATGCAGATGATAGACCTGG+TGG - chr3_1:6734436-6734455 Msa0346350:intron 45.0%
AGATTTCCACATCGATCTGG+AGG - chr3_1:6734460-6734479 Msa0346350:intron 45.0%
GATTTCCACATCGATCTGGA+GGG - chr3_1:6734461-6734480 Msa0346350:intron 45.0%
ATTTCCACATCGATCTGGAG+GGG - chr3_1:6734462-6734481 Msa0346350:intron 45.0%
TCTGGAGGGGGATATCAAAA+CGG - chr3_1:6734475-6734494 Msa0346350:intron 45.0%
GTGTGCAGCAACTCAGATTA+GGG + chr3_1:6734910-6734929 None:intergenic 45.0%
AGTGTGCAGCAACTCAGATT+AGG + chr3_1:6734911-6734930 None:intergenic 45.0%
TCTCAAATCGCTACCTCAAG+TGG + chr3_1:6735138-6735157 None:intergenic 45.0%
! TGAGATTGGTCACTATGCTC+CGG - chr3_1:6735153-6735172 Msa0346350:CDS 45.0%
!! TGTCCTTGTTTGCTGTTCAG+TGG - chr3_1:6735512-6735531 Msa0346350:CDS 45.0%
GGTTTAAGAATGCCATGCAG+GGG + chr3_1:6735565-6735584 None:intergenic 45.0%
ATTCTCTCCCCACCTCTTAA+TGG - chr3_1:6735600-6735619 Msa0346350:intron 45.0%
AAACACACCCCTCCATTAAG+AGG + chr3_1:6735615-6735634 None:intergenic 45.0%
AATACCAAACAACAGCCAGG+GGG + chr3_1:6735642-6735661 None:intergenic 45.0%
CAAATCTGCATAACCGCGAT+TGG + chr3_1:6735851-6735870 None:intergenic 45.0%
GGTTATGCAGATTTGCCAAG+TGG - chr3_1:6735856-6735875 Msa0346350:intron 45.0%
TATGCAGATTTGCCAAGTGG+GGG - chr3_1:6735859-6735878 Msa0346350:intron 45.0%
TCTTGGAGGAATTTGACGTG+CGG - chr3_1:6736233-6736252 Msa0346350:intron 45.0%
TGAACACCCCAATTCTCCTA+TGG - chr3_1:6736266-6736285 Msa0346350:intron 45.0%
TCCAAACAAATGCTCTCTGC+AGG - chr3_1:6736315-6736334 Msa0346350:CDS 45.0%
CCAAACAAATGCTCTCTGCA+GGG - chr3_1:6736316-6736335 Msa0346350:CDS 45.0%
CAGCTGCCAAAGAAGACTTT+GGG + chr3_1:6736465-6736484 None:intergenic 45.0%
CAAAGTCTTCTTTGGCAGCT+GGG - chr3_1:6736464-6736483 Msa0346350:intron 45.0%
AAAGTCTTCTTTGGCAGCTG+GGG - chr3_1:6736465-6736484 Msa0346350:intron 45.0%
! ATTGGTTTCAGGCTCTATGG+AGG - chr3_1:6736529-6736548 Msa0346350:intron 45.0%
! GCCACAGAAATCCTGATTTG+TGG - chr3_1:6736650-6736669 Msa0346350:intron 45.0%
CCCACAAATCAGGATTTCTG+TGG + chr3_1:6736654-6736673 None:intergenic 45.0%
CAACCATCATCCCACAAATC+AGG + chr3_1:6736664-6736683 None:intergenic 45.0%
AAATGCTCGACGTTTGGCAA+AGG - chr3_1:6737370-6737389 Msa0346350:intron 45.0%
GTGGATGCAGAGTTTAAACC+TGG + chr3_1:6737545-6737564 None:intergenic 45.0%
!! ACTGGCTTGCTCTGATTTAG+TGG + chr3_1:6737564-6737583 None:intergenic 45.0%
ACATGGCAGGGGATCTAATA+AGG - chr3_1:6737631-6737650 Msa0346350:intron 45.0%
CTTCTAGGTTCAGAACTGAC+AGG + chr3_1:6737689-6737708 None:intergenic 45.0%
!! CTGTCAGTTCTGAACCTAGA+AGG - chr3_1:6737687-6737706 Msa0346350:intron 45.0%
AATAGTGATAAGGCTCGCAG+TGG - chr3_1:6737809-6737828 Msa0346350:intron 45.0%
CTTGAGACTAGTGATGCCAA+AGG - chr3_1:6737956-6737975 Msa0346350:intron 45.0%
TTTAGGCATGTGAGACCAGA+AGG - chr3_1:6737980-6737999 Msa0346350:intron 45.0%
CTTTGCAGTCCTTACTTCCA+AGG + chr3_1:6738095-6738114 None:intergenic 45.0%
CTTGGAAGTAAGGACTGCAA+AGG - chr3_1:6738093-6738112 Msa0346350:intron 45.0%
! TATGGTTGGAAGTATGGCTG+TGG - chr3_1:6738181-6738200 Msa0346350:intron 45.0%
AAAACACCCAGAGCTTGTGT+TGG - chr3_1:6738264-6738283 Msa0346350:intron 45.0%
GTGGTTAATCTTGCAAGTGG+TGG - chr3_1:6738373-6738392 Msa0346350:intron 45.0%
GTTAATCTTGCAAGTGGTGG+TGG - chr3_1:6738376-6738395 Msa0346350:intron 45.0%
TGCAGCAATCTCAGGTAGAA+TGG - chr3_1:6738466-6738485 Msa0346350:intron 45.0%
!! AGGACAAGCCTTTAAAGCGA+AGG - chr3_1:6738836-6738855 Msa0346350:intron 45.0%
!! GCCTTTAAAGCGAAGGTTAC+TGG - chr3_1:6738843-6738862 Msa0346350:intron 45.0%
GCCGATTGAAAGATGATCGT+GGG - chr3_1:6738869-6738888 Msa0346350:intron 45.0%
TTGTTCTGTCACTCCTATCC+TGG + chr3_1:6738906-6738925 None:intergenic 45.0%
AGCACCAGCAAACCTCAATA+AGG + chr3_1:6739120-6739139 None:intergenic 45.0%
AACATCTGCATCGCAACTTC+TGG + chr3_1:6739193-6739212 None:intergenic 45.0%
! CCTGATGGATCATACGAAGA+TGG + chr3_1:6739229-6739248 None:intergenic 45.0%
CCATCTTCGTATGATCCATC+AGG - chr3_1:6739226-6739245 Msa0346350:intron 45.0%
TGCATGCACTAAGCATTCTG+AGG + chr3_1:6739530-6739549 None:intergenic 45.0%
GTGGTGCAGTTATCAAGACT+TGG - chr3_1:6739954-6739973 Msa0346350:intron 45.0%
CATAGACTATCGGAGCTTGT+AGG - chr3_1:6740002-6740021 Msa0346350:intron 45.0%
! GCTTGTAGGTTTCACTGGTT+TGG - chr3_1:6740016-6740035 Msa0346350:CDS 45.0%
!! CTGGTTTGGCTCATTGAGAT+TGG - chr3_1:6740030-6740049 Msa0346350:CDS 45.0%
TATTCCGATCCCACTTAGTG+GGG - chr3_1:6740313-6740332 Msa0346350:CDS 45.0%
!! GGGCTTTGTTGTTGTTGTTG+TGG - chr3_1:6740341-6740360 Msa0346350:CDS 45.0%
CACTGACATCCACAAACAAC+AGG + chr3_1:6740417-6740436 None:intergenic 45.0%
TTTGTGGATGTCAGTGACCT+GGG - chr3_1:6740421-6740440 Msa0346350:five_prime_UTR 45.0%
! GTGACCTGGGTTTTTAATCC+AGG - chr3_1:6740434-6740453 Msa0346350:five_prime_UTR 45.0%
! GGGTAGTTTGCAATTTGACC+TGG + chr3_1:6740455-6740474 None:intergenic 45.0%
!! ACAAAATATTAAAATATTAT+AGG - chr3_1:6736340-6736359 Msa0346350:CDS 5.0%
! GAGAGGGAGGTTTTCGACTT+CGG + chr3_1:6732773-6732792 None:intergenic 50.0%
ATCGGTCGTGAGATTCGAGA+GGG + chr3_1:6732789-6732808 None:intergenic 50.0%
CGAAATCTCTGTCGTCACGA+CGG + chr3_1:6732897-6732916 None:intergenic 50.0%
GGCGTTTGATGTCTCTATCG+CGG + chr3_1:6732978-6732997 None:intergenic 50.0%
AGTTAGGGCTAGGACTACGA+CGG + chr3_1:6732999-6733018 None:intergenic 50.0%
GTCCTCATAGACCTAACGAC+AGG - chr3_1:6733097-6733116 Msa0346350:exon 50.0%
AGGTTTGGCCATGATCACCT+CGG - chr3_1:6734382-6734401 Msa0346350:intron 50.0%
CTATGAACGTGGAGGTGGAA+GGG - chr3_1:6734408-6734427 Msa0346350:intron 50.0%
TATGAACGTGGAGGTGGAAG+GGG - chr3_1:6734409-6734428 Msa0346350:intron 50.0%
GGCTATGCAGATGATAGACC+TGG - chr3_1:6734433-6734452 Msa0346350:intron 50.0%
GGCAGATTTCCACATCGATC+TGG - chr3_1:6734457-6734476 Msa0346350:intron 50.0%
TTTCCACATCGATCTGGAGG+GGG - chr3_1:6734463-6734482 Msa0346350:intron 50.0%
!!! TTTTTGGGGTTGGCCACTTG+AGG - chr3_1:6735122-6735141 Msa0346350:CDS 50.0%
TCTCCCCACCTCTTAATGGA+GGG - chr3_1:6735604-6735623 Msa0346350:intron 50.0%
ACACCCCTCCATTAAGAGGT+GGG + chr3_1:6735611-6735630 None:intergenic 50.0%
CTTGGAGGAATTTGACGTGC+GGG - chr3_1:6736234-6736253 Msa0346350:intron 50.0%
TTGGAGGAATTTGACGTGCG+GGG - chr3_1:6736235-6736254 Msa0346350:intron 50.0%
!! CCCTGCAGAGAGCATTTGTT+TGG + chr3_1:6736319-6736338 None:intergenic 50.0%
ACTGAGGGGCTGTTTGAAAG+CGG - chr3_1:6736381-6736400 Msa0346350:intron 50.0%
CCAGCTGCCAAAGAAGACTT+TGG + chr3_1:6736466-6736485 None:intergenic 50.0%
CCAAAGTCTTCTTTGGCAGC+TGG - chr3_1:6736463-6736482 Msa0346350:intron 50.0%
AAGTCTTCTTTGGCAGCTGG+GGG - chr3_1:6736466-6736485 Msa0346350:intron 50.0%
TACCTACGCTCAGCTTCAGA+TGG + chr3_1:6736824-6736843 None:intergenic 50.0%
ATACCACTCCGCATCCTTGT+GGG + chr3_1:6737004-6737023 None:intergenic 50.0%
TATACCACTCCGCATCCTTG+TGG + chr3_1:6737005-6737024 None:intergenic 50.0%
GAATTTAGGCAAGCGTGAGG+AGG + chr3_1:6737480-6737499 None:intergenic 50.0%
TCAGAGGAGGAAACAGATGC+TGG - chr3_1:6737593-6737612 Msa0346350:intron 50.0%
GGCCCTGTAGTAATTATCCG+TGG - chr3_1:6737839-6737858 Msa0346350:intron 50.0%
!! CTTAGAGGGTGTTGAGCTAC+TGG - chr3_1:6737880-6737899 Msa0346350:intron 50.0%
ATGTGAGACCAGAAGGAGCA+AGG - chr3_1:6737987-6738006 Msa0346350:intron 50.0%
TCTTCATGCCTTGCTCCTTC+TGG + chr3_1:6737998-6738017 None:intergenic 50.0%
AGCTAAGTCGGGGTCAGAAT+GGG - chr3_1:6738021-6738040 Msa0346350:intron 50.0%
TCCTTACTTCCAAGGGATCC+AGG + chr3_1:6738087-6738106 None:intergenic 50.0%
TGCTGCAGCAGCTGATATGT+TGG - chr3_1:6738126-6738145 Msa0346350:intron 50.0%
TGTAGTGATCCTGATGCTCC+TGG - chr3_1:6738429-6738448 Msa0346350:intron 50.0%
ACCTGAGATTGCTGCATGAC+AGG + chr3_1:6738462-6738481 None:intergenic 50.0%
GGCCGATTGAAAGATGATCG+TGG - chr3_1:6738868-6738887 Msa0346350:intron 50.0%
TCATGGGATGGCGAACTATC+AGG + chr3_1:6738940-6738959 None:intergenic 50.0%
ATAGTTCGCCATCCCATGAG+AGG - chr3_1:6738941-6738960 Msa0346350:intron 50.0%
GTTTCCCAACTGCCTCTCAT+GGG + chr3_1:6738956-6738975 None:intergenic 50.0%
AGGCATCAAAACTGGAGGAG+GGG + chr3_1:6739040-6739059 None:intergenic 50.0%
CAGGCATCAAAACTGGAGGA+GGG + chr3_1:6739041-6739060 None:intergenic 50.0%
ACAGGCATCAAAACTGGAGG+AGG + chr3_1:6739042-6739061 None:intergenic 50.0%
GGTACAGGCATCAAAACTGG+AGG + chr3_1:6739045-6739064 None:intergenic 50.0%
CCAGGTACAGGCATCAAAAC+TGG + chr3_1:6739048-6739067 None:intergenic 50.0%
!! CCAGTTTTGATGCCTGTACC+TGG - chr3_1:6739045-6739064 Msa0346350:intron 50.0%
TCTGGTGGAGCAGGAACAAA+GGG + chr3_1:6739175-6739194 None:intergenic 50.0%
TTCTGGTGGAGCAGGAACAA+AGG + chr3_1:6739176-6739195 None:intergenic 50.0%
ATCTGCATCGCAACTTCTGG+TGG + chr3_1:6739190-6739209 None:intergenic 50.0%
GAACGCATCGTCATTCCTGA+TGG + chr3_1:6739244-6739263 None:intergenic 50.0%
TCAGGAATGACGATGCGTTC+TGG - chr3_1:6739244-6739263 Msa0346350:intron 50.0%
ATGCGTTCTGGTCCTCACAT+AGG - chr3_1:6739256-6739275 Msa0346350:intron 50.0%
TGCGTTCTGGTCCTCACATA+GGG - chr3_1:6739257-6739276 Msa0346350:intron 50.0%
GGGAGGAACAGCAATCATAG+AGG + chr3_1:6739290-6739309 None:intergenic 50.0%
ATAAGTACCTCCGCATCCGT+CGG + chr3_1:6739330-6739349 None:intergenic 50.0%
TGGGTGCTCTCCAGTAGAAT+TGG - chr3_1:6739589-6739608 Msa0346350:intron 50.0%
TCGGAGCTTGTAGGTTTCAC+TGG - chr3_1:6740011-6740030 Msa0346350:CDS 50.0%
TTCCCGAGCAAAATGCTACC+TGG - chr3_1:6740174-6740193 Msa0346350:CDS 50.0%
! AGCCAGGTAGCATTTTGCTC+GGG + chr3_1:6740179-6740198 None:intergenic 50.0%
! CAGCCAGGTAGCATTTTGCT+CGG + chr3_1:6740180-6740199 None:intergenic 50.0%
TACCTCCCCGGAACAGAAAA+AGG - chr3_1:6740269-6740288 Msa0346350:CDS 50.0%
! AACCTTTTTCTGTTCCGGGG+AGG + chr3_1:6740274-6740293 None:intergenic 50.0%
ATTCCGATCCCACTTAGTGG+GGG - chr3_1:6740314-6740333 Msa0346350:CDS 50.0%
TATCCCCCACTAAGTGGGAT+CGG + chr3_1:6740320-6740339 None:intergenic 50.0%
ATCCCACTTAGTGGGGGATA+AGG - chr3_1:6740320-6740339 Msa0346350:CDS 50.0%
TCCCACTTAGTGGGGGATAA+GGG - chr3_1:6740321-6740340 Msa0346350:CDS 50.0%
GTTTGTGGATGTCAGTGACC+TGG - chr3_1:6740420-6740439 Msa0346350:five_prime_UTR 50.0%
GATCGGTCGTGAGATTCGAG+AGG + chr3_1:6732790-6732809 None:intergenic 55.0%
AAATCGCGACGACGAGGGTT+GGG + chr3_1:6732871-6732890 None:intergenic 55.0%
TGTAGTAACCACCTCCACCG+CGG + chr3_1:6732951-6732970 None:intergenic 55.0%
CGGTCACGATAGTTAGGGCT+AGG + chr3_1:6733009-6733028 None:intergenic 55.0%
AGCGGCGGTCACGATAGTTA+GGG + chr3_1:6733014-6733033 None:intergenic 55.0%
TAGCGGCGGTCACGATAGTT+AGG + chr3_1:6733015-6733034 None:intergenic 55.0%
TTTGGCCATGATCACCTCGG+TGG - chr3_1:6734385-6734404 Msa0346350:intron 55.0%
CATAGCCACCGAGGTGATCA+TGG + chr3_1:6734393-6734412 None:intergenic 55.0%
GCTATGAACGTGGAGGTGGA+AGG - chr3_1:6734407-6734426 Msa0346350:intron 55.0%
CGATGTGGAAATCTGCCACC+AGG + chr3_1:6734454-6734473 None:intergenic 55.0%
TATCCCCCTCCAGATCGATG+TGG + chr3_1:6734469-6734488 None:intergenic 55.0%
TTTCTCTCACGTCCCCTGCA+TGG - chr3_1:6735550-6735569 Msa0346350:CDS 55.0%
CTCTCCCCACCTCTTAATGG+AGG - chr3_1:6735603-6735622 Msa0346350:intron 55.0%
CTCCCCACCTCTTAATGGAG+GGG - chr3_1:6735605-6735624 Msa0346350:intron 55.0%
CACCCCTCCATTAAGAGGTG+GGG + chr3_1:6735610-6735629 None:intergenic 55.0%
CACACCCCTCCATTAAGAGG+TGG + chr3_1:6735612-6735631 None:intergenic 55.0%
GCAGATCTGGATGCCAATCG+CGG - chr3_1:6735835-6735854 Msa0346350:intron 55.0%
TGGAGGAATTTGACGTGCGG+GGG - chr3_1:6736236-6736255 Msa0346350:intron 55.0%
AGTCTTCTTTGGCAGCTGGG+GGG - chr3_1:6736467-6736486 Msa0346350:intron 55.0%
GGTTTCAGGCTCTATGGAGG+AGG - chr3_1:6736532-6736551 Msa0346350:intron 55.0%
! TGCCATCTGAAGCTGAGCGT+AGG - chr3_1:6736819-6736838 Msa0346350:intron 55.0%
ATACCCACAAGGATGCGGAG+TGG - chr3_1:6736998-6737017 Msa0346350:intron 55.0%
CAAGCGTGAGGAGGAAGAGA+AGG + chr3_1:6737471-6737490 None:intergenic 55.0%
AGCCAGTGAGCCCAATTCAG+AGG - chr3_1:6737577-6737596 Msa0346350:intron 55.0%
CTCCTCTGAATTGGGCTCAC+TGG + chr3_1:6737582-6737601 None:intergenic 55.0%
CAGTGAGCCCAATTCAGAGG+AGG - chr3_1:6737580-6737599 Msa0346350:intron 55.0%
GAGGAGGAAACAGATGCTGG+TGG - chr3_1:6737596-6737615 Msa0346350:intron 55.0%
CGATTTCTCTGCTGCTCCGA+AGG - chr3_1:6737658-6737677 Msa0346350:intron 55.0%
GAACTGACAGGGTGAGCCTT+CGG + chr3_1:6737677-6737696 None:intergenic 55.0%
TAAGGCTCGCAGTGGATCTG+TGG - chr3_1:6737817-6737836 Msa0346350:intron 55.0%
AAGGCTCGCAGTGGATCTGT+GGG - chr3_1:6737818-6737837 Msa0346350:intron 55.0%
CAGCTAAGTCGGGGTCAGAA+TGG - chr3_1:6738020-6738039 Msa0346350:intron 55.0%
GCCTGGATCCCTTGGAAGTA+AGG - chr3_1:6738083-6738102 Msa0346350:intron 55.0%
AGTGATCCTGATGCTCCTGG+TGG - chr3_1:6738432-6738451 Msa0346350:intron 55.0%
GCCTGTCATGCAGCAATCTC+AGG - chr3_1:6738458-6738477 Msa0346350:intron 55.0%
ATGCTGCTGTCTATGGGGCA+AGG - chr3_1:6738695-6738714 Msa0346350:CDS 55.0%
CCATCCCATGAGAGGCAGTT+GGG - chr3_1:6738949-6738968 Msa0346350:intron 55.0%
GGTTTCCCAACTGCCTCTCA+TGG + chr3_1:6738957-6738976 None:intergenic 55.0%
GGCATCAAAACTGGAGGAGG+GGG + chr3_1:6739039-6739058 None:intergenic 55.0%
TTGATGCCTGTACCTGGTGC+CGG - chr3_1:6739051-6739070 Msa0346350:intron 55.0%
ATCGCAACTTCTGGTGGAGC+AGG + chr3_1:6739184-6739203 None:intergenic 55.0%
GCGTTCTGGTCCTCACATAG+GGG - chr3_1:6739258-6739277 Msa0346350:intron 55.0%
CGTTCTGGTCCTCACATAGG+GGG - chr3_1:6739259-6739278 Msa0346350:intron 55.0%
GGATCAGGTCTAAAGGTGGG+AGG + chr3_1:6739307-6739326 None:intergenic 55.0%
CGGGGATCAGGTCTAAAGGT+GGG + chr3_1:6739310-6739329 None:intergenic 55.0%
TCGGGGATCAGGTCTAAAGG+TGG + chr3_1:6739311-6739330 None:intergenic 55.0%
CCTTTAGACCTGATCCCCGA+CGG - chr3_1:6739311-6739330 Msa0346350:intron 55.0%
TAAGTACCTCCGCATCCGTC+GGG + chr3_1:6739329-6739348 None:intergenic 55.0%
!! GCACTAAGCATTCTGAGGCC+AGG + chr3_1:6739525-6739544 None:intergenic 55.0%
GCCCTTATCCCCCACTAAGT+GGG + chr3_1:6740325-6740344 None:intergenic 55.0%
AGCCCTTATCCCCCACTAAG+TGG + chr3_1:6740326-6740345 None:intergenic 55.0%
GGTCGTGAGATTCGAGAGGG+AGG + chr3_1:6732786-6732805 None:intergenic 60.0%
TGGAGGTGGGAGATCGTCGT+CGG + chr3_1:6732842-6732861 None:intergenic 60.0%
GGTTGGGGTTAGGTGGAGGT+GGG + chr3_1:6732855-6732874 None:intergenic 60.0%
AATCGCGACGACGAGGGTTG+GGG + chr3_1:6732870-6732889 None:intergenic 60.0%
GAAATCGCGACGACGAGGGT+TGG + chr3_1:6732872-6732891 None:intergenic 60.0%
GGTCGAAATCGCGACGACGA+GGG + chr3_1:6732876-6732895 None:intergenic 60.0%
GCTGCGGAGGAGGAGAATAG+CGG + chr3_1:6733032-6733051 None:intergenic 60.0%
GGAGAACGACGAGACTGCTG+CGG + chr3_1:6733048-6733067 None:intergenic 60.0%
CACCTCGGTGGCTATGAACG+TGG - chr3_1:6734397-6734416 Msa0346350:intron 60.0%
CTCCACGTTCATAGCCACCG+AGG + chr3_1:6734402-6734421 None:intergenic 60.0%
CTCGGTGGCTATGAACGTGG+AGG - chr3_1:6734400-6734419 Msa0346350:intron 60.0%
GGTGGCTATGAACGTGGAGG+TGG - chr3_1:6734403-6734422 Msa0346350:intron 60.0%
GTGTCCCCCTGGCTGTTGTT+TGG - chr3_1:6735635-6735654 Msa0346350:intron 60.0%
GAGGGGCTGTTTGAAAGCGG+TGG - chr3_1:6736384-6736403 Msa0346350:intron 60.0%
GCAGAGAAGGTTGGACAGCC+TGG - chr3_1:6738066-6738085 Msa0346350:intron 60.0%
GTTGGACAGCCTGGATCCCT+TGG - chr3_1:6738075-6738094 Msa0346350:intron 60.0%
TGCATGACAGGCGTTCCACC+AGG + chr3_1:6738450-6738469 None:intergenic 60.0%
GGAATCGGCGAGACCAGGAT+AGG - chr3_1:6738890-6738909 Msa0346350:intron 60.0%
GCCATCCCATGAGAGGCAGT+TGG - chr3_1:6738948-6738967 Msa0346350:intron 60.0%
CCCAACTGCCTCTCATGGGA+TGG + chr3_1:6738952-6738971 None:intergenic 60.0%
TGATGCCTGTACCTGGTGCC+GGG - chr3_1:6739052-6739071 Msa0346350:intron 60.0%
AGAGAAACCAACCCGGCACC+AGG + chr3_1:6739066-6739085 None:intergenic 60.0%
AGGGTCCCAGAGGCCTGAAT+AGG + chr3_1:6739156-6739175 None:intergenic 60.0%
GCAGGAACAAAGGGTCCCAG+AGG + chr3_1:6739166-6739185 None:intergenic 60.0%
GAGGCTTGTCCCCCTATGTG+AGG + chr3_1:6739271-6739290 None:intergenic 60.0%
CCGTCGGGGATCAGGTCTAA+AGG + chr3_1:6739314-6739333 None:intergenic 60.0%
AAGTACCTCCGCATCCGTCG+GGG + chr3_1:6739328-6739347 None:intergenic 60.0%
!! CGGTGGTGGTGGTGGGAGAT+CGG + chr3_1:6732807-6732826 None:intergenic 65.0%
AGATCGTCGTCGGGAGGAGG+TGG + chr3_1:6732832-6732851 None:intergenic 65.0%
GGAGGTGGGAGATCGTCGTC+GGG + chr3_1:6732841-6732860 None:intergenic 65.0%
GGGTTGGGGTTAGGTGGAGG+TGG + chr3_1:6732856-6732875 None:intergenic 65.0%
CGAGGGTTGGGGTTAGGTGG+AGG + chr3_1:6732859-6732878 None:intergenic 65.0%
CGACGAGGGTTGGGGTTAGG+TGG + chr3_1:6732862-6732881 None:intergenic 65.0%
CGACGACGAGGGTTGGGGTT+AGG + chr3_1:6732865-6732884 None:intergenic 65.0%
CGGTCGAAATCGCGACGACG+AGG + chr3_1:6732877-6732896 None:intergenic 65.0%
GCGGAGGAGGAGAATAGCGG+CGG + chr3_1:6733029-6733048 None:intergenic 65.0%
GAACGACGAGACTGCTGCGG+AGG + chr3_1:6733045-6733064 None:intergenic 65.0%
GAACGTGGAGGTGGAAGGGG+TGG - chr3_1:6734412-6734431 Msa0346350:intron 65.0%
GGGGTGTGTTTGTGTCCCCC+TGG - chr3_1:6735624-6735643 Msa0346350:intron 65.0%
!! TGCCAAGTGGGGGTGCTCGA+AGG - chr3_1:6735869-6735888 Msa0346350:intron 65.0%
GACCTTCGAGCACCCCCACT+TGG + chr3_1:6735874-6735893 None:intergenic 65.0%
!! GGCGTTCCACCAGGAGCATC+AGG + chr3_1:6738441-6738460 None:intergenic 65.0%
TCGTGGGAATCGGCGAGACC+AGG - chr3_1:6738885-6738904 Msa0346350:intron 65.0%
ACCAACCCGGCACCAGGTAC+AGG + chr3_1:6739060-6739079 None:intergenic 65.0%
GACCTGATCCCCGACGGATG+CGG - chr3_1:6739317-6739336 Msa0346350:intron 65.0%
!! GGTGGAGCGGTGGTGGTGGT+GGG + chr3_1:6732814-6732833 None:intergenic 70.0%
!! AGGTGGAGCGGTGGTGGTGG+TGG + chr3_1:6732815-6732834 None:intergenic 70.0%
! AGGAGGTGGAGCGGTGGTGG+TGG + chr3_1:6732818-6732837 None:intergenic 70.0%
GTCGTCGGGAGGAGGTGGAG+CGG + chr3_1:6732827-6732846 None:intergenic 70.0%
GGGAGATCGTCGTCGGGAGG+AGG + chr3_1:6732835-6732854 None:intergenic 70.0%
GGTGGGAGATCGTCGTCGGG+AGG + chr3_1:6732838-6732857 None:intergenic 70.0%
TTCGACCGCCGTCCTCACCG+TGG - chr3_1:6732913-6732932 Msa0346350:three_prime_UTR 70.0%
CGACGAGACTGCTGCGGAGG+AGG + chr3_1:6733042-6733061 None:intergenic 70.0%
TCTTTGGCAGCTGGGGGGCC+TGG - chr3_1:6736472-6736491 Msa0346350:intron 70.0%
CTTTGGCAGCTGGGGGGCCT+GGG - chr3_1:6736473-6736492 Msa0346350:intron 70.0%
TTTGGCAGCTGGGGGGCCTG+GGG - chr3_1:6736474-6736493 Msa0346350:intron 70.0%
! GCCTGTACCTGGTGCCGGGT+TGG - chr3_1:6739056-6739075 Msa0346350:intron 70.0%
CTCCGCATCCGTCGGGGATC+AGG + chr3_1:6739322-6739341 None:intergenic 70.0%
CTGATCCCCGACGGATGCGG+AGG - chr3_1:6739320-6739339 Msa0346350:intron 70.0%
GGGAGGAGGTGGAGCGGTGG+TGG + chr3_1:6732821-6732840 None:intergenic 75.0%
GTCGGGAGGAGGTGGAGCGG+TGG + chr3_1:6732824-6732843 None:intergenic 75.0%
GACCGCCGTCCTCACCGTGG+CGG - chr3_1:6732916-6732935 Msa0346350:three_prime_UTR 75.0%
CTCGGCCGCCACGGTGAGGA+CGG + chr3_1:6732924-6732943 None:intergenic 75.0%
CACCTCCACCGCGGCCACCT+CGG + chr3_1:6732942-6732961 None:intergenic 75.0%
! GGCCGCCACGGTGAGGACGG+CGG + chr3_1:6732921-6732940 None:intergenic 80.0%
! CGTCCTCACCGTGGCGGCCG+AGG - chr3_1:6732922-6732941 Msa0346350:three_prime_UTR 80.0%
! CCACCTCGGCCGCCACGGTG+AGG + chr3_1:6732928-6732947 None:intergenic 80.0%
! CCTCACCGTGGCGGCCGAGG+TGG - chr3_1:6732925-6732944 Msa0346350:three_prime_UTR 80.0%
! CGAGGTGGCCGCGGTGGAGG+TGG - chr3_1:6732940-6732959 Msa0346350:three_prime_UTR 80.0%
! CGCGGCCACCTCGGCCGCCA+CGG + chr3_1:6732933-6732952 None:intergenic 85.0%
! CGTGGCGGCCGAGGTGGCCG+CGG - chr3_1:6732931-6732950 Msa0346350:three_prime_UTR 85.0%
! GGCCGAGGTGGCCGCGGTGG+AGG - chr3_1:6732937-6732956 Msa0346350:three_prime_UTR 85.0%
! GGCGGCCGAGGTGGCCGCGG+TGG - chr3_1:6732934-6732953 Msa0346350:three_prime_UTR 90.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 6732622 6740506 6732622 ID=Msa0346350;Name=Msa0346350
chr3_1 mRNA 6732622 6740506 6732622 ID=Msa0346350-mRNA-1;Parent=Msa0346350;Name=Msa0346350-mRNA-1;_AED=0.10;_eAED=0.10;_QI=144|1|1|1|1|1|12|483|704
chr3_1 exon 6732622 6733165 6732622 ID=Msa0346350-mRNA-1:exon:1900;Parent=Msa0346350-mRNA-1
chr3_1 exon 6733787 6733966 6733787 ID=Msa0346350-mRNA-1:exon:1899;Parent=Msa0346350-mRNA-1
chr3_1 exon 6734055 6734290 6734055 ID=Msa0346350-mRNA-1:exon:1898;Parent=Msa0346350-mRNA-1
chr3_1 exon 6734649 6734694 6734649 ID=Msa0346350-mRNA-1:exon:1897;Parent=Msa0346350-mRNA-1
chr3_1 exon 6734793 6735590 6734793 ID=Msa0346350-mRNA-1:exon:1896;Parent=Msa0346350-mRNA-1
chr3_1 exon 6735699 6735767 6735699 ID=Msa0346350-mRNA-1:exon:1895;Parent=Msa0346350-mRNA-1
chr3_1 exon 6735918 6735965 6735918 ID=Msa0346350-mRNA-1:exon:1894;Parent=Msa0346350-mRNA-1
chr3_1 exon 6736109 6736183 6736109 ID=Msa0346350-mRNA-1:exon:1893;Parent=Msa0346350-mRNA-1
chr3_1 exon 6736288 6736362 6736288 ID=Msa0346350-mRNA-1:exon:1892;Parent=Msa0346350-mRNA-1
chr3_1 exon 6737238 6737289 6737238 ID=Msa0346350-mRNA-1:exon:1891;Parent=Msa0346350-mRNA-1
chr3_1 exon 6738623 6738744 6738623 ID=Msa0346350-mRNA-1:exon:1890;Parent=Msa0346350-mRNA-1
chr3_1 exon 6740010 6740506 6740010 ID=Msa0346350-mRNA-1:exon:1889;Parent=Msa0346350-mRNA-1
chr3_1 five_prime_UTR 6740363 6740506 6740363 ID=Msa0346350-mRNA-1:five_prime_utr;Parent=Msa0346350-mRNA-1
chr3_1 CDS 6740010 6740362 6740010 ID=Msa0346350-mRNA-1:cds;Parent=Msa0346350-mRNA-1
chr3_1 CDS 6738623 6738744 6738623 ID=Msa0346350-mRNA-1:cds;Parent=Msa0346350-mRNA-1
chr3_1 CDS 6737238 6737289 6737238 ID=Msa0346350-mRNA-1:cds;Parent=Msa0346350-mRNA-1
chr3_1 CDS 6736288 6736362 6736288 ID=Msa0346350-mRNA-1:cds;Parent=Msa0346350-mRNA-1
chr3_1 CDS 6736109 6736183 6736109 ID=Msa0346350-mRNA-1:cds;Parent=Msa0346350-mRNA-1
chr3_1 CDS 6735918 6735965 6735918 ID=Msa0346350-mRNA-1:cds;Parent=Msa0346350-mRNA-1
chr3_1 CDS 6735699 6735767 6735699 ID=Msa0346350-mRNA-1:cds;Parent=Msa0346350-mRNA-1
chr3_1 CDS 6734793 6735590 6734793 ID=Msa0346350-mRNA-1:cds;Parent=Msa0346350-mRNA-1
chr3_1 CDS 6734649 6734694 6734649 ID=Msa0346350-mRNA-1:cds;Parent=Msa0346350-mRNA-1
chr3_1 CDS 6734055 6734290 6734055 ID=Msa0346350-mRNA-1:cds;Parent=Msa0346350-mRNA-1
chr3_1 CDS 6733787 6733966 6733787 ID=Msa0346350-mRNA-1:cds;Parent=Msa0346350-mRNA-1
chr3_1 CDS 6733105 6733165 6733105 ID=Msa0346350-mRNA-1:cds;Parent=Msa0346350-mRNA-1
chr3_1 three_prime_UTR 6732622 6733104 6732622 ID=Msa0346350-mRNA-1:three_prime_utr;Parent=Msa0346350-mRNA-1
Gene Sequence

>Msa0346350

ATGGCCGAAGTCGAAAACCTCCCTCTCGAATCTCACGACCGATCTCCCACCACCACCACCGCTCCACCTCCTCCCGACGACGATCTCCCACCTCCACCTAACCCCAACCCTCGTCGTCGCGATTTCGACCGTCGTGACGACAGAGATTTCGACCGCCGTCCTCACCGTGGCGGCCGAGGTGGCCGCGGTGGAGGTGGTTACTACAATAACCGCGATAGAGACATCAAACGCCGTCGTAGTCCTAGCCCTAACTATCGTGACCGCCGCTATTCTCCTCCTCCGCAGCAGTCTCGTCGTTCTCCTCCGCTGTATAAGAGATCTAGAAGGGGTAGTCCTCATAGACCTAACGACAGGTTTGGCCATGATCACCTCGGTGGCTATGAACGTGGAGGTGGAAGGGGTGGCTATGCAGATGATAGACCTGGTGGCAGATTTCCACATCGATCTGGAGGGGGATATCAAAACGGAATTTCTGATCTGGATGCCAATCGCGGTTATGCAGATTTGCCAAGTGGGGGTGCTCGAAGAGAGGGGTTGATGTCCTATAAGCAATTCATCCAGGAGCTTGAAGATGATATACTGCCATCTGAAGCTGAGCGTAGATACCAAGAGTACAAGTCAGAGTATATTACTACCCAAAAACGAGCTTATTTCAATACCCACAAGGATGCGGAGTGGTTGAAAGATAAGTATCATCCAACAAATTTACTTACAGTAATTGAAAGGAGGAATGAAAATGCTCGACGTTTGGCAAAGGAGTTTTTGCTTGATTTGCAAAGTGGAGCACTAGACATAAATCCAGGTTTAAACTCTGCATCCACTAAATCAGAGCAAGCCAGTGAGCCCAATTCAGAGGAGGAAACAGATGCTGGTGGTAAAAGAAGAAGACATGGCAGGGGATCTAATAAGGACAACGATTTCTCTGCTGCTCCGAAGGCTCACCCTGTCAGTTCTGAACCTAGAAGGATACAAGAAGATATTCATCAGGTTCAGGCTGTTGTTCGTAAGCTTGACAAGGAAAAAGGGATTGAAGATAATATTTTATGTACTAATGATCATAGTAAAAATAGTGATAAGGCTCGCAGTGGATCTGTGGGCCCTGTAGTAATTATCCGTGGCTTAACATCTATTAAGGGCTTAGAGGGTGTTGAGCTACTGGACACACTTATAACATATCTTTGGCGGATTCATGGTGTAGATTATTATGGAATGCTTGAGACTAGTGATGCCAAAGGTTTTAGGCATGTGAGACCAGAAGGAGCAAGGCATGAAGAAACAGCTAAGTCGGGGTCAGAATGGGAGAAAAAACTTGATTCATTTTGGCAGAGAAGGTTGGACAGCCTGGATCCCTTGGAAGTAAGGACTGCAAAGGAGAAGATAGATGCTGCAGCAGCTGATATGTTGGATCCATATGTTAGAAAAATTAGGGATGAAAAGTATGGTTGGAAGTATGGCTGTGGAGCCAAGAGTTGCACAAAGCTTTTTCATGCTGTTGAGTTTGTGTACAAACATCTCAAGCTAAAACACCCAGAGCTTGTGTTGGAATTAACATCAAAATTGCGGGAAGATCTTTATTTTCAAAATTACATGAATGATCCTGATGCTCCTGGTGGAACGCCTGTCATGCAGCAATCTCAGGACAAGCCTTTAAAGCGAAGGTTACTGGAAGGCCGATTGAAAGATGATCGTGGGAATCGGCGAGACCAGGATAGGAGTGACAGAACAAATGGAGATAGACCTGATAGTTCGCCATCCCATGAGAGGCAGTTGGGAAACCGTGATGAAACAATGTTCGATGCATATGGTGGACCTGCTGTATCATTCAACTCAGATATGCCCCCTCCTCCAGTTTTGATGCCTGTACCTGGTGCCGGGCCTCTGGGACCCTTTGTTCCTGCTCCACCAGAAGTTGCGATGCAGATGTTTAGGGATCAAGGACCATCTTCGTATGATCCATCAGGAATGACGATGCGTTCTGGTCCTCACATAGGGGGACAAGCCTCTATGATTGCTGTTCCTCCCACCTTTAGACCTGATCCCCGACGGATGCGGAGTTATCAAGACTTGGATGCCCCAGAAGAAGAAGTTACTGTCATAGACTATCGGAGCTTGTAG
Protein sequence

>Msa0346350

MAEVENLPLESHDRSPTTTTAPPPPDDDLPPPPNPNPRRRDFDRRDDRDFDRRPHRGGRGGRGGGGYYNNRDRDIKRRRSPSPNYRDRRYSPPPQQSRRSPPLYKRSRRGSPHRPNDRFGHDHLGGYERGGGRGGYADDRPGGRFPHRSGGGYQNGISDLDANRGYADLPSGGARREGLMSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAYFNTHKDAEWLKDKYHPTNLLTVIERRNENARRLAKEFLLDLQSGALDINPGLNSASTKSEQASEPNSEEETDAGGKRRRHGRGSNKDNDFSAAPKAHPVSSEPRRIQEDIHQVQAVVRKLDKEKGIEDNILCTNDHSKNSDKARSGSVGPVVIIRGLTSIKGLEGVELLDTLITYLWRIHGVDYYGMLETSDAKGFRHVRPEGARHEETAKSGSEWEKKLDSFWQRRLDSLDPLEVRTAKEKIDAAAADMLDPYVRKIRDEKYGWKYGCGAKSCTKLFHAVEFVYKHLKLKHPELVLELTSKLREDLYFQNYMNDPDAPGGTPVMQQSQDKPLKRRLLEGRLKDDRGNRRDQDRSDRTNGDRPDSSPSHERQLGNRDETMFDAYGGPAVSFNSDMPPPPVLMPVPGAGPLGPFVPAPPEVAMQMFRDQGPSSYDPSGMTMRSGPHIGGQASMIAVPPTFRPDPRRMRSYQDLDAPEEEVTVIDYRSL*