Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347350 | XP_003598260.1 | 97.368 | 152 | 4 | 0 | 1 | 152 | 1 | 152 | 1.95e-105 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347350 | sp|Q96C01|F136A_HUMAN | 29.358 | 109 | 68 | 3 | 42 | 144 | 28 | 133 | 8.77e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347350 | G7IYL4 | 97.368 | 152 | 4 | 0 | 1 | 152 | 1 | 152 | 9.34e-106 | 307 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0347350 | Msa0393940 | 0.801983 | 6.959742e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347350 | MtrunA17_Chr3g0079491 | 97.368 | 152 | 4 | 0 | 1 | 152 | 1 | 152 | 1.80e-109 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347350 | AT2G31725.1 | 62.416 | 149 | 55 | 1 | 1 | 148 | 1 | 149 | 2.22e-70 | 209 |
| Msa0347350 | AT1G05730.1 | 60.403 | 149 | 58 | 1 | 1 | 148 | 1 | 149 | 8.81e-68 | 202 |
| Msa0347350 | AT2G43720.1 | 51.389 | 144 | 69 | 1 | 6 | 148 | 4 | 147 | 3.74e-55 | 170 |
| Msa0347350 | AT1G05730.2 | 59.259 | 108 | 43 | 1 | 42 | 148 | 10 | 117 | 6.04e-45 | 143 |
| Msa0347350 | AT1G05740.1 | 45.652 | 138 | 62 | 2 | 1 | 125 | 1 | 138 | 3.76e-41 | 135 |
| Msa0347350 | AT2G43720.2 | 50.926 | 108 | 52 | 1 | 42 | 148 | 1 | 108 | 3.06e-39 | 129 |
Find 41 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTACGAAAGGGTTTA+AGG | 0.111268 | 3_1:-8348750 | None:intergenic |
| AGACATTATTTAACTGTTTC+TGG | 0.114136 | 3_1:+8354261 | Msa0347350:three_prime_UTR |
| AAATGAGATGGCAAAGTTTC+AGG | 0.195239 | 3_1:+8350978 | Msa0347350:CDS |
| TGAGAAAATAAAATCTTTCT+AGG | 0.212124 | 3_1:-8354203 | None:intergenic |
| CTTCAGTTGCAAAAGAAAAT+TGG | 0.224745 | 3_1:+8354234 | Msa0347350:three_prime_UTR |
| CTCATATGCACATTTAAAAT+AGG | 0.309655 | 3_1:-8350866 | None:intergenic |
| TTCTCTACGAAAGGGTTTAA+GGG | 0.340029 | 3_1:-8348749 | None:intergenic |
| AATTAGGTCAACAGAGAATT+AGG | 0.348786 | 3_1:+8350289 | Msa0347350:CDS |
| CATCTTGATGCTGTCTTGAA+TGG | 0.352007 | 3_1:-8354122 | None:intergenic |
| GCAGCAGCTGAAGCGCAATT+AGG | 0.368329 | 3_1:+8350273 | Msa0347350:CDS |
| GTGATTGGAAGTAAACTATC+TGG | 0.377064 | 3_1:-8348841 | None:intergenic |
| TGCATCGGCATTCAAATTAC+AGG | 0.384744 | 3_1:-8354309 | None:intergenic |
| ACTTCCAATCACACATTCTC+AGG | 0.395371 | 3_1:+8348852 | Msa0347350:five_prime_UTR |
| GGAAGTAAACTATCTGGGTT+TGG | 0.396960 | 3_1:-8348835 | None:intergenic |
| TAATTGACATGGTCTTGAAC+AGG | 0.399803 | 3_1:-8350357 | None:intergenic |
| AACAAGTTGAAGGCTTCCTT+TGG | 0.432439 | 3_1:+8354160 | Msa0347350:CDS |
| CTAACCTGAGAATGTGTGAT+TGG | 0.446872 | 3_1:-8348856 | None:intergenic |
| TTCTAGGAAGAACTGTTGTC+TGG | 0.450400 | 3_1:-8354187 | None:intergenic |
| GCTTCTTACAAACAAGTTGA+AGG | 0.450651 | 3_1:+8354150 | Msa0347350:CDS |
| TCATAGCTCCAGGTTTCTGT+TGG | 0.458233 | 3_1:-8354072 | None:intergenic |
| GAAGTTGAATAGATCTATGA+TGG | 0.466964 | 3_1:+8354018 | Msa0347350:CDS |
| ATCATATCATTCATAGCTCC+AGG | 0.479620 | 3_1:-8354082 | None:intergenic |
| TTCAACTTGTTTGTAAGAAG+CGG | 0.487256 | 3_1:-8354148 | None:intergenic |
| TCTAAGCTCCAACAGAAACC+TGG | 0.500351 | 3_1:+8354064 | Msa0347350:CDS |
| GGTTTGTCAAGACAAGTATG+AGG | 0.511683 | 3_1:+8354039 | Msa0347350:CDS |
| GACTGTTGCACATTAGAAAG+AGG | 0.512334 | 3_1:-8350949 | None:intergenic |
| CCATGTCAATTATACTCTCC+AGG | 0.522500 | 3_1:+8350368 | Msa0347350:CDS |
| CTTTGATAGAAGCAGAAAGC+AGG | 0.531953 | 3_1:+8350891 | Msa0347350:CDS |
| TAAACCCTTTCGTAGAGAAG+AGG | 0.539246 | 3_1:+8348753 | Msa0347350:five_prime_UTR |
| TTGAATGGCTTCATCAGCAC+AGG | 0.548604 | 3_1:-8354107 | None:intergenic |
| ATCGATGAATCAAGATGCAT+CGG | 0.563189 | 3_1:-8354324 | None:intergenic |
| GAGAATTAGGCAGAAACTTG+AGG | 0.580267 | 3_1:+8350302 | Msa0347350:CDS |
| TTTACAGTGAGTATATCAGA+TGG | 0.582686 | 3_1:+8350242 | Msa0347350:intron |
| AATTGACATGGTCTTGAACA+GGG | 0.588865 | 3_1:-8350356 | None:intergenic |
| TGTTGTTGAAAATTCTTATG+CGG | 0.592133 | 3_1:-8348782 | None:intergenic |
| ACAGTCATTTGAAAATGAGA+TGG | 0.593900 | 3_1:+8350966 | Msa0347350:CDS |
| TGATTGGAAGTAAACTATCT+GGG | 0.606327 | 3_1:-8348840 | None:intergenic |
| CCTGGAGAGTATAATTGACA+TGG | 0.606570 | 3_1:-8350368 | None:intergenic |
| ATTGACATGGTCTTGAACAG+GGG | 0.619900 | 3_1:-8350355 | None:intergenic |
| ACTGTTGTCTGGAATGCCAA+AGG | 0.633485 | 3_1:-8354176 | None:intergenic |
| GTTTGTCAAGACAAGTATGA+GGG | 0.640452 | 3_1:+8354040 | Msa0347350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATTTTCTAAAATTATTAT+TGG | - | chr3_1:8349830-8349849 | None:intergenic | 10.0% |
| !! | AATTTGAATCAAAATAAAAA+AGG | - | chr3_1:8350589-8350608 | None:intergenic | 10.0% |
| !!! | TTTGAAATTTTAATATAGAT+AGG | + | chr3_1:8350742-8350761 | Msa0347350:intron | 10.0% |
| !!! | TTTTTGAAATACAAAAGTTT+AGG | - | chr3_1:8349538-8349557 | None:intergenic | 15.0% |
| !!! | TTAATTTGCTTTTAGAAAAA+AGG | - | chr3_1:8349747-8349766 | None:intergenic | 15.0% |
| !!! | TTATATGGTTGATTTTTTAT+CGG | + | chr3_1:8350013-8350032 | Msa0347350:intron | 15.0% |
| !!! | TATAGGTTTGTTTAAATAAT+AGG | + | chr3_1:8350150-8350169 | Msa0347350:intron | 15.0% |
| !!! | TTTATAATTCTTGGTTTTAA+AGG | + | chr3_1:8350680-8350699 | Msa0347350:intron | 15.0% |
| !!! | TATTAAAATTTCAAAGCATT+TGG | - | chr3_1:8350737-8350756 | None:intergenic | 15.0% |
| !! | AATTCTATTTATCAGTAAAA+GGG | - | chr3_1:8350803-8350822 | None:intergenic | 15.0% |
| !! | AAATTCTATTTATCAGTAAA+AGG | - | chr3_1:8350804-8350823 | None:intergenic | 15.0% |
| !! | GAAATAATTAAGATAGAAAA+AGG | + | chr3_1:8353026-8353045 | Msa0347350:intron | 15.0% |
| !!! | AAATTAATTTTCTATGATGT+GGG | + | chr3_1:8353118-8353137 | Msa0347350:intron | 15.0% |
| !! | TCAAAAGTTAAATTAATACA+AGG | - | chr3_1:8353905-8353924 | None:intergenic | 15.0% |
| !! | AGTCTATATAATCTGATTTA+AGG | + | chr3_1:8349089-8349108 | Msa0347350:intron | 20.0% |
| !! | TTATAAAGGATAAATCATGA+AGG | + | chr3_1:8349654-8349673 | Msa0347350:intron | 20.0% |
| !!! | GTAATATTGAATGGTTTTAT+TGG | + | chr3_1:8350478-8350497 | Msa0347350:intron | 20.0% |
| !! | TGAATCAAAATAAAAAAGGA+AGG | - | chr3_1:8350585-8350604 | None:intergenic | 20.0% |
| !! | TTGCATATAATGGTAATATT+CGG | + | chr3_1:8350773-8350792 | Msa0347350:intron | 20.0% |
| !! | TTTCATTAGATAGAGAAAAT+AGG | - | chr3_1:8351248-8351267 | None:intergenic | 20.0% |
| !!! | TGCTTTCAATTTTATAGAAT+AGG | + | chr3_1:8351326-8351345 | Msa0347350:intron | 20.0% |
| !!! | GCTTTCAATTTTATAGAATA+GGG | + | chr3_1:8351327-8351346 | Msa0347350:intron | 20.0% |
| !!! | ATAAACTCATGTCATTTATT+TGG | + | chr3_1:8351544-8351563 | Msa0347350:intron | 20.0% |
| !! | AAACCATTTAGAAAGATTAA+GGG | - | chr3_1:8351773-8351792 | None:intergenic | 20.0% |
| !! | TAAACCATTTAGAAAGATTA+AGG | - | chr3_1:8351774-8351793 | None:intergenic | 20.0% |
| !! | AAAAAATTCTTAAGTTTGAG+TGG | + | chr3_1:8352094-8352113 | Msa0347350:intron | 20.0% |
| !! | AATTAAAAGTAGGATGAAAA+TGG | - | chr3_1:8352149-8352168 | None:intergenic | 20.0% |
| !!! | TGTTTTTTATAATGTGGAAA+AGG | - | chr3_1:8353066-8353085 | None:intergenic | 20.0% |
| !!! | TAGATCTTTTTACATGTTTT+TGG | + | chr3_1:8353091-8353110 | Msa0347350:intron | 20.0% |
| !!! | AGATCTTTTTACATGTTTTT+GGG | + | chr3_1:8353092-8353111 | Msa0347350:intron | 20.0% |
| !! | CACATCATAGAAAATTAATT+TGG | - | chr3_1:8353119-8353138 | None:intergenic | 20.0% |
| !!! | CAAATTAATTTTCTATGATG+TGG | + | chr3_1:8353117-8353136 | Msa0347350:intron | 20.0% |
| !!! | AAATTAAGTGTTGAAGAAAA+CGG | - | chr3_1:8353278-8353297 | None:intergenic | 20.0% |
| !!! | TTCATAAATTTTTCAGTAGT+TGG | + | chr3_1:8353306-8353325 | Msa0347350:intron | 20.0% |
| !! | ATTACAGTCTTAATTGTATT+CGG | + | chr3_1:8353391-8353410 | Msa0347350:intron | 20.0% |
| !! | GAATAAGCGTAATAAATTAT+AGG | - | chr3_1:8353807-8353826 | None:intergenic | 20.0% |
| !! | TGAGAAAATAAAATCTTTCT+AGG | - | chr3_1:8354206-8354225 | None:intergenic | 20.0% |
| ! | TGTTGTTGAAAATTCTTATG+CGG | - | chr3_1:8348785-8348804 | None:intergenic | 25.0% |
| ! | ATTAGGGAAAAACAAATCAA+GGG | - | chr3_1:8349006-8349025 | None:intergenic | 25.0% |
| ! | AATTAGGGAAAAACAAATCA+AGG | - | chr3_1:8349007-8349026 | None:intergenic | 25.0% |
| ! | CGAAGAGAAAATCAAAATTA+GGG | - | chr3_1:8349022-8349041 | None:intergenic | 25.0% |
| ! | ACGAAGAGAAAATCAAAATT+AGG | - | chr3_1:8349023-8349042 | None:intergenic | 25.0% |
| !!! | TAATTTTGATTTTCTCTTCG+TGG | + | chr3_1:8349022-8349041 | Msa0347350:intron | 25.0% |
| !!! | AATTTTGATTTTCTCTTCGT+GGG | + | chr3_1:8349023-8349042 | Msa0347350:intron | 25.0% |
| !! | TGAACATGTTTTATAAGTGA+GGG | - | chr3_1:8349223-8349242 | None:intergenic | 25.0% |
| ! | AAAAATCAACCATATAAGCA+TGG | - | chr3_1:8350010-8350029 | None:intergenic | 25.0% |
| ! | TATAGGCACATACAAATTAT+AGG | + | chr3_1:8350133-8350152 | Msa0347350:intron | 25.0% |
| !! | CTAAAGTACTAACTTTAATG+AGG | + | chr3_1:8350186-8350205 | Msa0347350:intron | 25.0% |
| ! | TGATATACTCACTGTAAAAT+GGG | - | chr3_1:8350240-8350259 | None:intergenic | 25.0% |
| ! | TAATGTCATAAGTACTTCAA+TGG | + | chr3_1:8350406-8350425 | Msa0347350:intron | 25.0% |
| ! | TCTTTCGTTGTAATATTGAA+TGG | + | chr3_1:8350469-8350488 | Msa0347350:intron | 25.0% |
| ! | GTAGTTCATATTTAGGAATT+AGG | - | chr3_1:8350646-8350665 | None:intergenic | 25.0% |
| ! | TCATGTAGTAGTTCATATTT+AGG | - | chr3_1:8350653-8350672 | None:intergenic | 25.0% |
| !! | GACATGTCTTTTATAATTCT+TGG | + | chr3_1:8350671-8350690 | Msa0347350:intron | 25.0% |
| ! | CAATCAAACAATCAACAATA+CGG | - | chr3_1:8350832-8350851 | None:intergenic | 25.0% |
| !! | CTCATATGCACATTTAAAAT+AGG | - | chr3_1:8350869-8350888 | None:intergenic | 25.0% |
| ! | AGAGTATGATCACAAAATTA+CGG | - | chr3_1:8351013-8351032 | None:intergenic | 25.0% |
| ! | TAGAATCACATTAAAAGAAG+TGG | - | chr3_1:8351110-8351129 | None:intergenic | 25.0% |
| !! | TCTAACTTTTAAATGATGAC+TGG | + | chr3_1:8351126-8351145 | Msa0347350:intron | 25.0% |
| ! | TAGATAGAGAAAATAGGAAA+GGG | - | chr3_1:8351242-8351261 | None:intergenic | 25.0% |
| ! | TTAGATAGAGAAAATAGGAA+AGG | - | chr3_1:8351243-8351262 | None:intergenic | 25.0% |
| !!! | ATTTTAACATGCTATCAAAG+TGG | + | chr3_1:8351267-8351286 | Msa0347350:intron | 25.0% |
| !!! | ATGTTTAGTTCTAATCAAAG+TGG | - | chr3_1:8351307-8351326 | None:intergenic | 25.0% |
| !!! | ATTTTGGTAACAAATCTATG+TGG | - | chr3_1:8351376-8351395 | None:intergenic | 25.0% |
| ! | AGAAACATGGTGTATATAAT+AGG | + | chr3_1:8351647-8351666 | Msa0347350:intron | 25.0% |
| ! | ATTCATAGTACTTAACATTG+TGG | + | chr3_1:8351988-8352007 | Msa0347350:intron | 25.0% |
| !!! | TCATCCTACTTTTAATTCTA+TGG | + | chr3_1:8352152-8352171 | Msa0347350:intron | 25.0% |
| ! | TCAACCATAGAATTAAAAGT+AGG | - | chr3_1:8352159-8352178 | None:intergenic | 25.0% |
| ! | AGATATATGTAGCAGTTATT+GGG | + | chr3_1:8352468-8352487 | Msa0347350:intron | 25.0% |
| ! | AGGAACATATAATACATTCA+TGG | - | chr3_1:8352779-8352798 | None:intergenic | 25.0% |
| ! | CACAAATCAAAATTTAGAGA+TGG | - | chr3_1:8352809-8352828 | None:intergenic | 25.0% |
| !! | GTAAAAGAAAGTATATCGAA+TGG | - | chr3_1:8352847-8352866 | None:intergenic | 25.0% |
| !!! | ACACGTTGTTTTTTATAATG+TGG | - | chr3_1:8353072-8353091 | None:intergenic | 25.0% |
| ! | TATTGAGGTAAGCAAAAATT+AGG | - | chr3_1:8353221-8353240 | None:intergenic | 25.0% |
| ! | ATCAGAGAATATATCTATTG+AGG | - | chr3_1:8353236-8353255 | None:intergenic | 25.0% |
| ! | ATATATGCATAAAAAAGCCA+TGG | - | chr3_1:8353491-8353510 | None:intergenic | 25.0% |
| !! | AAGATTTCAATCTGAAATGT+CGG | - | chr3_1:8353670-8353689 | None:intergenic | 25.0% |
| ! | CCAGTAATAATTTGAGAAAA+TGG | - | chr3_1:8353746-8353765 | None:intergenic | 25.0% |
| !! | CCATTTTCTCAAATTATTAC+TGG | + | chr3_1:8353743-8353762 | Msa0347350:intron | 25.0% |
| ! | TCTTATATTACAATGCTTCA+AGG | - | chr3_1:8353956-8353975 | None:intergenic | 25.0% |
| ! | CACTATTAGATCAAATACAA+AGG | - | chr3_1:8353979-8353998 | None:intergenic | 25.0% |
| !! | ATCTAATAGTGTTTTCAACA+TGG | + | chr3_1:8353988-8354007 | Msa0347350:intron | 25.0% |
| ! | AGACATTATTTAACTGTTTC+TGG | + | chr3_1:8354261-8354280 | Msa0347350:three_prime_UTR | 25.0% |
| TGATTGGAAGTAAACTATCT+GGG | - | chr3_1:8348843-8348862 | None:intergenic | 30.0% | |
| ! | GTCTCAAAAATTGTTTCTCT+GGG | + | chr3_1:8349045-8349064 | Msa0347350:intron | 30.0% |
| TAAGATCCTATAGTATATCG+TGG | + | chr3_1:8349148-8349167 | Msa0347350:intron | 30.0% | |
| ! | CTGAACATGTTTTATAAGTG+AGG | - | chr3_1:8349224-8349243 | None:intergenic | 30.0% |
| CTCACTTATAAAACATGTTC+AGG | + | chr3_1:8349222-8349241 | Msa0347350:intron | 30.0% | |
| ! | ATTTTATCCGATTCCTAAGT+AGG | + | chr3_1:8349249-8349268 | Msa0347350:intron | 30.0% |
| TACAAAAGTTTAGGTGAGTT+GGG | - | chr3_1:8349529-8349548 | None:intergenic | 30.0% | |
| ATACAAAAGTTTAGGTGAGT+TGG | - | chr3_1:8349530-8349549 | None:intergenic | 30.0% | |
| TTTATAAAAGACGTCTCGTT+GGG | - | chr3_1:8349641-8349660 | None:intergenic | 30.0% | |
| ACATACACAACATTGATACA+TGG | - | chr3_1:8349870-8349889 | None:intergenic | 30.0% | |
| TGTTATCAATGGCAGATTAT+GGG | - | chr3_1:8350041-8350060 | None:intergenic | 30.0% | |
| CTGATATACTCACTGTAAAA+TGG | - | chr3_1:8350241-8350260 | None:intergenic | 30.0% | |
| TTTACAGTGAGTATATCAGA+TGG | + | chr3_1:8350242-8350261 | Msa0347350:intron | 30.0% | |
| AATTAGGTCAACAGAGAATT+AGG | + | chr3_1:8350289-8350308 | Msa0347350:CDS | 30.0% | |
| AAAAAAGGAAGGAAAAATGC+AGG | - | chr3_1:8350574-8350593 | None:intergenic | 30.0% | |
| ! | GGTAATGCTTTTGCATATAA+TGG | + | chr3_1:8350763-8350782 | Msa0347350:intron | 30.0% |
| ACAGTCATTTGAAAATGAGA+TGG | + | chr3_1:8350966-8350985 | Msa0347350:CDS | 30.0% | |
| AGTATGATCACAAAATTACG+GGG | - | chr3_1:8351011-8351030 | None:intergenic | 30.0% | |
| GAGTATGATCACAAAATTAC+GGG | - | chr3_1:8351012-8351031 | None:intergenic | 30.0% | |
| TGAAATAGAGACAAGAGAAA+AGG | - | chr3_1:8351194-8351213 | None:intergenic | 30.0% | |
| !! | TTAGTTCTAATCAAAGTGGA+TGG | - | chr3_1:8351303-8351322 | None:intergenic | 30.0% |
| AACATAGACAACAAACTAAG+AGG | - | chr3_1:8351430-8351449 | None:intergenic | 30.0% | |
| !! | TTTTTCCCACTAGTTGATAT+TGG | + | chr3_1:8351499-8351518 | Msa0347350:intron | 30.0% |
| TTGTTGTCAAATTTCTGCTA+TGG | - | chr3_1:8351729-8351748 | None:intergenic | 30.0% | |
| TAGCAGAAATTTGACAACAA+TGG | + | chr3_1:8351729-8351748 | Msa0347350:intron | 30.0% | |
| TTTAGAAAGATTAAGGGAAG+TGG | - | chr3_1:8351767-8351786 | None:intergenic | 30.0% | |
| CTTCCCTTAATCTTTCTAAA+TGG | + | chr3_1:8351767-8351786 | Msa0347350:intron | 30.0% | |
| ! | GTTTAAGCTATAGTTTTCCT+TGG | + | chr3_1:8351789-8351808 | Msa0347350:intron | 30.0% |
| AAAGACAAAAACACGGATAA+AGG | - | chr3_1:8351857-8351876 | None:intergenic | 30.0% | |
| CACATAAAGCAAGATAAGAT+TGG | - | chr3_1:8351965-8351984 | None:intergenic | 30.0% | |
| CAATAATAAGCAAGCAAACT+TGG | - | chr3_1:8352025-8352044 | None:intergenic | 30.0% | |
| GCTTATTATTGCCCAATATT+TGG | + | chr3_1:8352034-8352053 | Msa0347350:intron | 30.0% | |
| TAAAAGTAGGATGAAAATGG+AGG | - | chr3_1:8352146-8352165 | None:intergenic | 30.0% | |
| GTTCATTATACAAAGTGACA+GGG | - | chr3_1:8352197-8352216 | None:intergenic | 30.0% | |
| CACTTTGTATAATGAACCTA+AGG | + | chr3_1:8352200-8352219 | Msa0347350:intron | 30.0% | |
| TAAATAGTAGGATCGTAACA+CGG | + | chr3_1:8352304-8352323 | Msa0347350:intron | 30.0% | |
| GAGATATATGTAGCAGTTAT+TGG | + | chr3_1:8352467-8352486 | Msa0347350:intron | 30.0% | |
| TACAGCAGTTAATAACATTG+TGG | + | chr3_1:8352516-8352535 | Msa0347350:intron | 30.0% | |
| ACAGCAGTTAATAACATTGT+GGG | + | chr3_1:8352517-8352536 | Msa0347350:intron | 30.0% | |
| !! | AATTCATTGGTGTTAATGAC+TGG | - | chr3_1:8352559-8352578 | None:intergenic | 30.0% |
| GTCATTAACACCAATGAATT+TGG | + | chr3_1:8352559-8352578 | Msa0347350:intron | 30.0% | |
| ATTAACACCAATGAATTTGG+TGG | + | chr3_1:8352562-8352581 | Msa0347350:intron | 30.0% | |
| ACATTCATGGTAGTCAAAAT+CGG | - | chr3_1:8352766-8352785 | None:intergenic | 30.0% | |
| CAAAATTTAGAGATGGCAAT+TGG | - | chr3_1:8352802-8352821 | None:intergenic | 30.0% | |
| ! | ACTTTCTTTTACCTTTACTC+AGG | + | chr3_1:8352855-8352874 | Msa0347350:intron | 30.0% |
| ! | GTGGGTTTCTTAATTTTCTT+TGG | + | chr3_1:8353136-8353155 | Msa0347350:intron | 30.0% |
| ! | ACCTAGTCTAGAGTTTAAAT+GGG | - | chr3_1:8353543-8353562 | None:intergenic | 30.0% |
| ATTGAAATCTTCTCCAGTAT+CGG | + | chr3_1:8353679-8353698 | Msa0347350:intron | 30.0% | |
| GAAGTTGAATAGATCTATGA+TGG | + | chr3_1:8354018-8354037 | Msa0347350:CDS | 30.0% | |
| ! | TTCAACTTGTTTGTAAGAAG+CGG | - | chr3_1:8354151-8354170 | None:intergenic | 30.0% |
| CTTCAGTTGCAAAAGAAAAT+TGG | + | chr3_1:8354234-8354253 | Msa0347350:three_prime_UTR | 30.0% | |
| TTCTCTACGAAAGGGTTTAA+GGG | - | chr3_1:8348752-8348771 | None:intergenic | 35.0% | |
| ! | TTTTCCTCTTCTCTACGAAA+GGG | - | chr3_1:8348760-8348779 | None:intergenic | 35.0% |
| ! | TTTTTCCTCTTCTCTACGAA+AGG | - | chr3_1:8348761-8348780 | None:intergenic | 35.0% |
| GTGATTGGAAGTAAACTATC+TGG | - | chr3_1:8348844-8348863 | None:intergenic | 35.0% | |
| ! | GGTCTCAAAAATTGTTTCTC+TGG | + | chr3_1:8349044-8349063 | Msa0347350:intron | 35.0% |
| ATCCTATAGTATATCGTGGT+TGG | + | chr3_1:8349152-8349171 | Msa0347350:intron | 35.0% | |
| TCCTATAGTATATCGTGGTT+GGG | + | chr3_1:8349153-8349172 | Msa0347350:intron | 35.0% | |
| ATAGAGTCCTACTTAGGAAT+CGG | - | chr3_1:8349259-8349278 | None:intergenic | 35.0% | |
| ! | TTTGGGACATCGATCATATA+TGG | + | chr3_1:8349332-8349351 | Msa0347350:intron | 35.0% |
| TTGGGACATCGATCATATAT+GGG | + | chr3_1:8349333-8349352 | Msa0347350:intron | 35.0% | |
| TTATTACTCGTTGAGCTTTG+AGG | + | chr3_1:8349475-8349494 | Msa0347350:intron | 35.0% | |
| CTTTATAAAAGACGTCTCGT+TGG | - | chr3_1:8349642-8349661 | None:intergenic | 35.0% | |
| ! | CAACGAGACGTCTTTTATAA+AGG | + | chr3_1:8349640-8349659 | Msa0347350:intron | 35.0% |
| GCACCTATTATATCTGTCAT+AGG | + | chr3_1:8349976-8349995 | Msa0347350:intron | 35.0% | |
| CAGCCTATGACAGATATAAT+AGG | - | chr3_1:8349982-8350001 | None:intergenic | 35.0% | |
| TTATCAATGGCAGATTATGG+GGG | - | chr3_1:8350039-8350058 | None:intergenic | 35.0% | |
| GTTATCAATGGCAGATTATG+GGG | - | chr3_1:8350040-8350059 | None:intergenic | 35.0% | |
| CTGTTATCAATGGCAGATTA+TGG | - | chr3_1:8350042-8350061 | None:intergenic | 35.0% | |
| !! | GTTTGGTGTACTGTTATCAA+TGG | - | chr3_1:8350052-8350071 | None:intergenic | 35.0% |
| ! | AATTGACATGGTCTTGAACA+GGG | - | chr3_1:8350359-8350378 | None:intergenic | 35.0% |
| ! | TAATTGACATGGTCTTGAAC+AGG | - | chr3_1:8350360-8350379 | None:intergenic | 35.0% |
| GCAAGAAAGTTAATACCATC+TGG | + | chr3_1:8350532-8350551 | Msa0347350:intron | 35.0% | |
| CAAAAAATTAGCTAGCCAGA+TGG | - | chr3_1:8350550-8350569 | None:intergenic | 35.0% | |
| AAATGAGATGGCAAAGTTTC+AGG | + | chr3_1:8350978-8350997 | Msa0347350:CDS | 35.0% | |
| TGGAACTGGAAATCTAAACA+AGG | - | chr3_1:8351356-8351375 | None:intergenic | 35.0% | |
| GTAACAAATCTATGTGGAAC+TGG | - | chr3_1:8351370-8351389 | None:intergenic | 35.0% | |
| ! | CTGGATGACGATTACAATTT+TGG | - | chr3_1:8351392-8351411 | None:intergenic | 35.0% |
| GAGGAAGACAAGTATAAAAC+TGG | - | chr3_1:8351411-8351430 | None:intergenic | 35.0% | |
| TCAACTAGTGGGAAAAAACT+TGG | - | chr3_1:8351496-8351515 | None:intergenic | 35.0% | |
| TGTAGCCAATATCAACTAGT+GGG | - | chr3_1:8351507-8351526 | None:intergenic | 35.0% | |
| ATGTAGCCAATATCAACTAG+TGG | - | chr3_1:8351508-8351527 | None:intergenic | 35.0% | |
| !! | GCGATTGATAACACTGTTTT+GGG | - | chr3_1:8351570-8351589 | None:intergenic | 35.0% |
| CAAAACAGTGTTATCAATCG+CGG | + | chr3_1:8351569-8351588 | Msa0347350:intron | 35.0% | |
| AACAATCCGCCACATAAATA+TGG | + | chr3_1:8351608-8351627 | Msa0347350:intron | 35.0% | |
| ! | TATAATAGGTGTTGCGCTTA+TGG | + | chr3_1:8351661-8351680 | Msa0347350:intron | 35.0% |
| AAGGGTAGTCTAATAGTGAA+AGG | - | chr3_1:8351823-8351842 | None:intergenic | 35.0% | |
| ATAAAGGACATTGACCAGAA+GGG | - | chr3_1:8351841-8351860 | None:intergenic | 35.0% | |
| ! | ACTGTAGAGATTCGTTTTAG+TGG | - | chr3_1:8351896-8351915 | None:intergenic | 35.0% |
| GGTTCATTATACAAAGTGAC+AGG | - | chr3_1:8352198-8352217 | None:intergenic | 35.0% | |
| !! | TCTCATGTTTTAAGCACCTT+AGG | - | chr3_1:8352219-8352238 | None:intergenic | 35.0% |
| GTCACAAGATCGTAAATAGT+AGG | + | chr3_1:8352292-8352311 | Msa0347350:intron | 35.0% | |
| AGCGTTAAATAGTCCTACAT+CGG | + | chr3_1:8352333-8352352 | Msa0347350:intron | 35.0% | |
| CTGGCAATGTGTTTATAAGT+GGG | + | chr3_1:8352368-8352387 | Msa0347350:intron | 35.0% | |
| TGGCAATGTGTTTATAAGTG+GGG | + | chr3_1:8352369-8352388 | Msa0347350:intron | 35.0% | |
| ! | TCATACAGTCATAGCTTGTA+AGG | - | chr3_1:8352405-8352424 | None:intergenic | 35.0% |
| TTACAAGCTATGACTGTATG+AGG | + | chr3_1:8352404-8352423 | Msa0347350:intron | 35.0% | |
| TACAAGCTATGACTGTATGA+GGG | + | chr3_1:8352405-8352424 | Msa0347350:intron | 35.0% | |
| ! | GAGAGTGAATGCAATTTTGT+TGG | + | chr3_1:8352431-8352450 | Msa0347350:intron | 35.0% |
| TGGGACAATGATCATTGTAT+TGG | + | chr3_1:8352487-8352506 | Msa0347350:intron | 35.0% | |
| GGGACAATGATCATTGTATT+GGG | + | chr3_1:8352488-8352507 | Msa0347350:intron | 35.0% | |
| ! | TTATGAACCCTTTTTGTGGT+GGG | + | chr3_1:8352596-8352615 | Msa0347350:intron | 35.0% |
| !! | AATTTTTAGGCTTTCCAGGT+CGG | - | chr3_1:8352629-8352648 | None:intergenic | 35.0% |
| ! | CTACGCATTCTGCAATTTTT+AGG | - | chr3_1:8352642-8352661 | None:intergenic | 35.0% |
| ATTCTGCTTATCACAGAACA+CGG | + | chr3_1:8352707-8352726 | Msa0347350:intron | 35.0% | |
| AATTTAGAGATGGCAATTGG+AGG | - | chr3_1:8352799-8352818 | None:intergenic | 35.0% | |
| ! | TTCTTTTACCTTTACTCAGG+TGG | + | chr3_1:8352858-8352877 | Msa0347350:intron | 35.0% |
| AGACATATAGTGACAAACCA+CGG | - | chr3_1:8352897-8352916 | None:intergenic | 35.0% | |
| AGATGATCAATGAGATTGTG+AGG | - | chr3_1:8353174-8353193 | None:intergenic | 35.0% | |
| GAAGAAAACGGCTAATAGTA+AGG | - | chr3_1:8353266-8353285 | None:intergenic | 35.0% | |
| ATACCATGGCTTCATTTGTA+CGG | - | chr3_1:8353421-8353440 | None:intergenic | 35.0% | |
| TACAAATGAAGCCATGGTAT+AGG | + | chr3_1:8353421-8353440 | Msa0347350:intron | 35.0% | |
| ! | GTCTTGATTTTCCTATACCA+TGG | - | chr3_1:8353435-8353454 | None:intergenic | 35.0% |
| ! | ATAGTGAAGCGTTAACAACT+CGG | - | chr3_1:8353457-8353476 | None:intergenic | 35.0% |
| ! | CCTAGTCTAGAGTTTAAATG+GGG | - | chr3_1:8353542-8353561 | None:intergenic | 35.0% |
| ! | GACCTAGTCTAGAGTTTAAA+TGG | - | chr3_1:8353544-8353563 | None:intergenic | 35.0% |
| TGACAGCTGATAGAAAATCA+AGG | + | chr3_1:8353568-8353587 | Msa0347350:intron | 35.0% | |
| ! | TAGTGTTTTCAACATGGTAC+AGG | + | chr3_1:8353994-8354013 | Msa0347350:intron | 35.0% |
| GTTTGTCAAGACAAGTATGA+GGG | + | chr3_1:8354040-8354059 | Msa0347350:CDS | 35.0% | |
| ATCATATCATTCATAGCTCC+AGG | - | chr3_1:8354085-8354104 | None:intergenic | 35.0% | |
| ! | GCTTCTTACAAACAAGTTGA+AGG | + | chr3_1:8354150-8354169 | Msa0347350:CDS | 35.0% |
| ATCGATGAATCAAGATGCAT+CGG | - | chr3_1:8354327-8354346 | None:intergenic | 35.0% | |
| CTTCTCTACGAAAGGGTTTA+AGG | - | chr3_1:8348753-8348772 | None:intergenic | 40.0% | |
| TAAACCCTTTCGTAGAGAAG+AGG | + | chr3_1:8348753-8348772 | Msa0347350:five_prime_UTR | 40.0% | |
| GGAAGTAAACTATCTGGGTT+TGG | - | chr3_1:8348838-8348857 | None:intergenic | 40.0% | |
| ACTTCCAATCACACATTCTC+AGG | + | chr3_1:8348852-8348871 | Msa0347350:five_prime_UTR | 40.0% | |
| CTAACCTGAGAATGTGTGAT+TGG | - | chr3_1:8348859-8348878 | None:intergenic | 40.0% | |
| ACCCAACCACGATATACTAT+AGG | - | chr3_1:8349157-8349176 | None:intergenic | 40.0% | |
| AATCCTTACCTTTCACAAGC+CGG | - | chr3_1:8349199-8349218 | None:intergenic | 40.0% | |
| ! | GGTGTTATAGAGTCCTACTT+AGG | - | chr3_1:8349265-8349284 | None:intergenic | 40.0% |
| ! | AAAGTGGTGTGTCGGATTTT+TGG | + | chr3_1:8349314-8349333 | Msa0347350:intron | 40.0% |
| ! | AAGTGGTGTGTCGGATTTTT+GGG | + | chr3_1:8349315-8349334 | Msa0347350:intron | 40.0% |
| TGGGACATCGATCATATATG+GGG | + | chr3_1:8349334-8349353 | Msa0347350:intron | 40.0% | |
| AGTTGAGACGAAGGAGTAAA+GGG | - | chr3_1:8349392-8349411 | None:intergenic | 40.0% | |
| TTAGTTGAGAGTTGAGACGA+AGG | - | chr3_1:8349401-8349420 | None:intergenic | 40.0% | |
| TTCGTCTCAACTCTCAACTA+AGG | + | chr3_1:8349400-8349419 | Msa0347350:intron | 40.0% | |
| AGCTCAACGAGTAATAACAG+AGG | - | chr3_1:8349472-8349491 | None:intergenic | 40.0% | |
| ! | TTTGAGGTCTGACATAACCT+TGG | + | chr3_1:8349491-8349510 | Msa0347350:intron | 40.0% |
| AAAAAAAGTGGCACATTCCC+AGG | + | chr3_1:8349569-8349588 | Msa0347350:intron | 40.0% | |
| AAAAAAGTGGCACATTCCCA+GGG | + | chr3_1:8349570-8349589 | Msa0347350:intron | 40.0% | |
| !! | TTCGAGGTATTGTCCACTTT+GGG | - | chr3_1:8349687-8349706 | None:intergenic | 40.0% |
| !! | TTTCGAGGTATTGTCCACTT+TGG | - | chr3_1:8349688-8349707 | None:intergenic | 40.0% |
| ! | GACAGATATAATAGGTGCTG+TGG | - | chr3_1:8349974-8349993 | None:intergenic | 40.0% |
| ! | CTTCTAATTGAAGGCGTGTT+TGG | - | chr3_1:8350069-8350088 | None:intergenic | 40.0% |
| GAGAATTAGGCAGAAACTTG+AGG | + | chr3_1:8350302-8350321 | Msa0347350:CDS | 40.0% | |
| ! | ATTGACATGGTCTTGAACAG+GGG | - | chr3_1:8350358-8350377 | None:intergenic | 40.0% |
| ! | CCTGGAGAGTATAATTGACA+TGG | - | chr3_1:8350371-8350390 | None:intergenic | 40.0% |
| CCATGTCAATTATACTCTCC+AGG | + | chr3_1:8350368-8350387 | Msa0347350:CDS | 40.0% | |
| TATACTCTCCAGGTTCTTTC+TGG | + | chr3_1:8350378-8350397 | Msa0347350:intron | 40.0% | |
| TTAAGAGACCAGAAAGAACC+TGG | - | chr3_1:8350389-8350408 | None:intergenic | 40.0% | |
| CTTTGATAGAAGCAGAAAGC+AGG | + | chr3_1:8350891-8350910 | Msa0347350:CDS | 40.0% | |
| GACTGTTGCACATTAGAAAG+AGG | - | chr3_1:8350952-8350971 | None:intergenic | 40.0% | |
| TGATGACTGGAGCTTGATTA+AGG | + | chr3_1:8351139-8351158 | Msa0347350:intron | 40.0% | |
| GATGACTGGAGCTTGATTAA+GGG | + | chr3_1:8351140-8351159 | Msa0347350:intron | 40.0% | |
| AATCAAAGTGGATGGCATCA+TGG | - | chr3_1:8351295-8351314 | None:intergenic | 40.0% | |
| GTGGGAAAAAACTTGGTTGT+CGG | - | chr3_1:8351489-8351508 | None:intergenic | 40.0% | |
| !! | CGCGATTGATAACACTGTTT+TGG | - | chr3_1:8351571-8351590 | None:intergenic | 40.0% |
| ! | GTGTTATCAATCGCGGATTA+CGG | + | chr3_1:8351576-8351595 | Msa0347350:intron | 40.0% |
| TGCAGCATATGTCAGAAACA+TGG | + | chr3_1:8351634-8351653 | Msa0347350:intron | 40.0% | |
| TAAGGGAAGTGGTATATCTC+TGG | - | chr3_1:8351756-8351775 | None:intergenic | 40.0% | |
| TCACTATTAGACTACCCTTC+TGG | + | chr3_1:8351824-8351843 | Msa0347350:intron | 40.0% | |
| GATAAAGGACATTGACCAGA+AGG | - | chr3_1:8351842-8351861 | None:intergenic | 40.0% | |
| GCGCGTTAAAGACAAAAACA+CGG | - | chr3_1:8351864-8351883 | None:intergenic | 40.0% | |
| GTTGTGCAAGGCCAAATATT+GGG | - | chr3_1:8352048-8352067 | None:intergenic | 40.0% | |
| TGTTGTGCAAGGCCAAATAT+TGG | - | chr3_1:8352049-8352068 | None:intergenic | 40.0% | |
| AAGACCTACAATGTTGTGCA+AGG | - | chr3_1:8352060-8352079 | None:intergenic | 40.0% | |
| CACAACATTGTAGGTCTTAG+AGG | + | chr3_1:8352062-8352081 | Msa0347350:intron | 40.0% | |
| AACATTGTAGGTCTTAGAGG+CGG | + | chr3_1:8352065-8352084 | Msa0347350:intron | 40.0% | |
| CATGAGATACGATGTGTTCA+AGG | + | chr3_1:8352232-8352251 | Msa0347350:intron | 40.0% | |
| GTGTTCAAGGTAGTCAGAAT+CGG | + | chr3_1:8352245-8352264 | Msa0347350:intron | 40.0% | |
| TGTTCAAGGTAGTCAGAATC+GGG | + | chr3_1:8352246-8352265 | Msa0347350:intron | 40.0% | |
| CCACTTATAAACACATTGCC+AGG | - | chr3_1:8352370-8352389 | None:intergenic | 40.0% | |
| CCTGGCAATGTGTTTATAAG+TGG | + | chr3_1:8352367-8352386 | Msa0347350:intron | 40.0% | |
| GGCAATGTGTTTATAAGTGG+GGG | + | chr3_1:8352370-8352389 | Msa0347350:intron | 40.0% | |
| !! | ATTGGTGTTAATGACTGGAG+CGG | - | chr3_1:8352554-8352573 | None:intergenic | 40.0% |
| ! | TGGGTTATGAACCCTTTTTG+TGG | + | chr3_1:8352592-8352611 | Msa0347350:intron | 40.0% |
| ! | GTTATGAACCCTTTTTGTGG+TGG | + | chr3_1:8352595-8352614 | Msa0347350:intron | 40.0% |
| GTCATAACCCACCACAAAAA+GGG | - | chr3_1:8352606-8352625 | None:intergenic | 40.0% | |
| !! | ATTTTTAGGCTTTCCAGGTC+GGG | - | chr3_1:8352628-8352647 | None:intergenic | 40.0% |
| !! | CTGCAATTTTTAGGCTTTCC+AGG | - | chr3_1:8352633-8352652 | None:intergenic | 40.0% |
| CAGAATGCGTAGAAACGTAA+CGG | + | chr3_1:8352650-8352669 | Msa0347350:intron | 40.0% | |
| ! | TTGATAGCAGACAGTGGAAT+CGG | - | chr3_1:8352681-8352700 | None:intergenic | 40.0% |
| ! | CGTAAATTGATAGCAGACAG+TGG | - | chr3_1:8352687-8352706 | None:intergenic | 40.0% |
| TATGCAACAAGTGTACATGC+TGG | + | chr3_1:8352962-8352981 | Msa0347350:intron | 40.0% | |
| ACGGCTAATAGTAAGGTAGT+TGG | - | chr3_1:8353259-8353278 | None:intergenic | 40.0% | |
| AGCTCATAACACTAGAGAGA+AGG | - | chr3_1:8353344-8353363 | None:intergenic | 40.0% | |
| CACTATTTGTTCCACTTCCA+TGG | + | chr3_1:8353471-8353490 | Msa0347350:intron | 40.0% | |
| GCATAAAAAAGCCATGGAAG+TGG | - | chr3_1:8353485-8353504 | None:intergenic | 40.0% | |
| ! | TAAATGGGGACAAGAAGTGT+TGG | - | chr3_1:8353528-8353547 | None:intergenic | 40.0% |
| CCCCATTTAAACTCTAGACT+AGG | + | chr3_1:8353539-8353558 | Msa0347350:intron | 40.0% | |
| GGTTTGTCAAGACAAGTATG+AGG | + | chr3_1:8354039-8354058 | Msa0347350:CDS | 40.0% | |
| CATCTTGATGCTGTCTTGAA+TGG | - | chr3_1:8354125-8354144 | None:intergenic | 40.0% | |
| ! | AACAAGTTGAAGGCTTCCTT+TGG | + | chr3_1:8354160-8354179 | Msa0347350:CDS | 40.0% |
| ! | TTCTAGGAAGAACTGTTGTC+TGG | - | chr3_1:8354190-8354209 | None:intergenic | 40.0% |
| ! | TGCATCGGCATTCAAATTAC+AGG | - | chr3_1:8354312-8354331 | None:intergenic | 40.0% |
| CTTACACAAACCCACACAAC+CGG | + | chr3_1:8349177-8349196 | Msa0347350:intron | 45.0% | |
| AACACCTCTTGCACCCAAAA+CGG | + | chr3_1:8349279-8349298 | Msa0347350:intron | 45.0% | |
| !!! | TTCGAGGTGTTGTCCGTTTT+GGG | - | chr3_1:8349295-8349314 | None:intergenic | 45.0% |
| !!! | TTTCGAGGTGTTGTCCGTTT+TGG | - | chr3_1:8349296-8349315 | None:intergenic | 45.0% |
| ATCGATCATATATGGGGACG+AGG | + | chr3_1:8349340-8349359 | Msa0347350:intron | 45.0% | |
| GAGTTGAGACGAAGGAGTAA+AGG | - | chr3_1:8349393-8349412 | None:intergenic | 45.0% | |
| TGATCATCCGTTTGTCACAC+TGG | - | chr3_1:8349442-8349461 | None:intergenic | 45.0% | |
| TGAAGGACTTACACCCAAAG+TGG | + | chr3_1:8349671-8349690 | Msa0347350:intron | 45.0% | |
| AAGTTGACGTGATGAGCTTG+AGG | + | chr3_1:8349706-8349725 | Msa0347350:intron | 45.0% | |
| CGTGCATGTGAGTACTTCAT+TGG | - | chr3_1:8349772-8349791 | None:intergenic | 45.0% | |
| GTCTTGCGTCTAATATGTGC+TGG | - | chr3_1:8349901-8349920 | None:intergenic | 45.0% | |
| GAATGGCACAGAATCTGTCA+TGG | - | chr3_1:8349943-8349962 | None:intergenic | 45.0% | |
| ! | ATAATAGGTGCTGTGGCCTA+TGG | - | chr3_1:8349967-8349986 | None:intergenic | 45.0% |
| GCTGCAACACCATGCTTATA+TGG | + | chr3_1:8349998-8350017 | Msa0347350:intron | 45.0% | |
| ! | ACGCCTTCAATTAGAAGCGT+CGG | + | chr3_1:8350072-8350091 | Msa0347350:intron | 45.0% |
| ! | TTATCAATCGCGGATTACGG+TGG | + | chr3_1:8351579-8351598 | Msa0347350:intron | 45.0% |
| !! | TTATGTGGCGGATTGTTAGC+TGG | - | chr3_1:8351605-8351624 | None:intergenic | 45.0% |
| GCAGTGCCATATTTATGTGG+CGG | - | chr3_1:8351617-8351636 | None:intergenic | 45.0% | |
| GCTGCAGTGCCATATTTATG+TGG | - | chr3_1:8351620-8351639 | None:intergenic | 45.0% | |
| TGCATTGTGGCGTTATAGCA+TGG | - | chr3_1:8351705-8351724 | None:intergenic | 45.0% | |
| TTTCTGCTATGGCTGCATTG+TGG | - | chr3_1:8351718-8351737 | None:intergenic | 45.0% | |
| AGTGAAAGGTAGTGAGACCA+AGG | - | chr3_1:8351809-8351828 | None:intergenic | 45.0% | |
| !! | TTGGCCTTGCACAACATTGT+AGG | + | chr3_1:8352053-8352072 | Msa0347350:intron | 45.0% |
| CAAAGTGACAGGGAGATAGA+AGG | - | chr3_1:8352187-8352206 | None:intergenic | 45.0% | |
| ATCGGGATCCTAGGTATGAT+CGG | + | chr3_1:8352263-8352282 | Msa0347350:intron | 45.0% | |
| GGTCATCTCTTATCCGATGT+AGG | - | chr3_1:8352349-8352368 | None:intergenic | 45.0% | |
| ACATCGGATAAGAGATGACC+TGG | + | chr3_1:8352349-8352368 | Msa0347350:intron | 45.0% | |
| AGCTATGACTGTATGAGGGA+AGG | + | chr3_1:8352409-8352428 | Msa0347350:intron | 45.0% | |
| CCACACTCCACCAAATTCAT+TGG | - | chr3_1:8352572-8352591 | None:intergenic | 45.0% | |
| ! | CCAATGAATTTGGTGGAGTG+TGG | + | chr3_1:8352569-8352588 | Msa0347350:intron | 45.0% |
| ! | ATGAATTTGGTGGAGTGTGG+TGG | + | chr3_1:8352572-8352591 | Msa0347350:intron | 45.0% |
| ! | TGAATTTGGTGGAGTGTGGT+GGG | + | chr3_1:8352573-8352592 | Msa0347350:intron | 45.0% |
| GGTCATAACCCACCACAAAA+AGG | - | chr3_1:8352607-8352626 | None:intergenic | 45.0% | |
| TTATCACAGAACACGGCGAT+AGG | + | chr3_1:8352714-8352733 | Msa0347350:intron | 45.0% | |
| TATCACAGAACACGGCGATA+GGG | + | chr3_1:8352715-8352734 | Msa0347350:intron | 45.0% | |
| CAAGACTTCCACCTGAGTAA+AGG | - | chr3_1:8352869-8352888 | None:intergenic | 45.0% | |
| GTAATGCGCTTCAGAGTTTC+AGG | - | chr3_1:8353376-8353395 | None:intergenic | 45.0% | |
| !! | ACAAGAAGTGTTGGCAGTCA+TGG | - | chr3_1:8353519-8353538 | None:intergenic | 45.0% |
| ATGTCGGTATCTTGTCGTGT+TGG | - | chr3_1:8353708-8353727 | None:intergenic | 45.0% | |
| TCTAAGCTCCAACAGAAACC+TGG | + | chr3_1:8354064-8354083 | Msa0347350:CDS | 45.0% | |
| TCATAGCTCCAGGTTTCTGT+TGG | - | chr3_1:8354075-8354094 | None:intergenic | 45.0% | |
| TTGAATGGCTTCATCAGCAC+AGG | - | chr3_1:8354110-8354129 | None:intergenic | 45.0% | |
| ! | ACTGTTGTCTGGAATGCCAA+AGG | - | chr3_1:8354179-8354198 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAAAAAAAAAAG+TGG | + | chr3_1:8349557-8349576 | Msa0347350:intron | 5.0% |
| !! | ATATACTATATTATATTTAT+AGG | + | chr3_1:8350116-8350135 | Msa0347350:intron | 5.0% |
| CTTTCACAAGCCGGTTGTGT+GGG | - | chr3_1:8349190-8349209 | None:intergenic | 50.0% | |
| !! | CAACCGGCTTGTGAAAGGTA+AGG | + | chr3_1:8349193-8349212 | Msa0347350:intron | 50.0% |
| !! | TTGTCCGTTTTGGGTGCAAG+AGG | - | chr3_1:8349286-8349305 | None:intergenic | 50.0% |
| ACGGACAACACCTCGAAAAG+TGG | + | chr3_1:8349298-8349317 | Msa0347350:intron | 50.0% | |
| CACCTCGAAAAGTGGTGTGT+CGG | + | chr3_1:8349306-8349325 | Msa0347350:intron | 50.0% | |
| !! | ATCCGACACACCACTTTTCG+AGG | - | chr3_1:8349311-8349330 | None:intergenic | 50.0% |
| GGGTCTGTCAGCTATCATAG+TGG | - | chr3_1:8349372-8349391 | None:intergenic | 50.0% | |
| ATCCGTTTGTCACACTGGCA+GGG | - | chr3_1:8349437-8349456 | None:intergenic | 50.0% | |
| !! | TTGGGCTTTGAGACTCACCA+AGG | - | chr3_1:8349511-8349530 | None:intergenic | 50.0% |
| TTCCCAGGGAATCTAGGCTA+AGG | + | chr3_1:8349584-8349603 | Msa0347350:intron | 50.0% | |
| TCCCAGGGAATCTAGGCTAA+GGG | + | chr3_1:8349585-8349604 | Msa0347350:intron | 50.0% | |
| ACCCTTAGCCTAGATTCCCT+GGG | - | chr3_1:8349589-8349608 | None:intergenic | 50.0% | |
| TACCCTTAGCCTAGATTCCC+TGG | - | chr3_1:8349590-8349609 | None:intergenic | 50.0% | |
| !! | TCTCGTTGGGTTGAGGAATG+TGG | - | chr3_1:8349628-8349647 | None:intergenic | 50.0% |
| ! | AAAGACGTCTCGTTGGGTTG+AGG | - | chr3_1:8349635-8349654 | None:intergenic | 50.0% |
| GCTCATCACGTCAACTTTCG+AGG | - | chr3_1:8349703-8349722 | None:intergenic | 50.0% | |
| TGACGTGATGAGCTTGAGGT+CGG | + | chr3_1:8349710-8349729 | Msa0347350:intron | 50.0% | |
| TGGCACAGAATCTGTCATGG+CGG | - | chr3_1:8349940-8349959 | None:intergenic | 50.0% | |
| ! | GATTCTGTGCCATTCGCCAT+AGG | + | chr3_1:8349948-8349967 | Msa0347350:intron | 50.0% |
| ! | GCACCGACGCTTCTAATTGA+AGG | - | chr3_1:8350078-8350097 | None:intergenic | 50.0% |
| GTAGTCAGAATCGGGATCCT+AGG | + | chr3_1:8352254-8352273 | Msa0347350:intron | 50.0% | |
| TCGGGATCCTAGGTATGATC+GGG | + | chr3_1:8352264-8352283 | Msa0347350:intron | 50.0% | |
| ATCCTAGGTATGATCGGGGA+AGG | + | chr3_1:8352269-8352288 | Msa0347350:intron | 50.0% | |
| TCCTAGGTATGATCGGGGAA+GGG | + | chr3_1:8352270-8352289 | Msa0347350:intron | 50.0% | |
| ! | GTGGAAGTCTTGTGTTTCCG+TGG | + | chr3_1:8352877-8352896 | Msa0347350:intron | 50.0% |
| TACATGCTGGCGTCATCTCT+TGG | + | chr3_1:8352975-8352994 | Msa0347350:intron | 50.0% | |
| CCATGGCTTCATTTGTACGG+TGG | - | chr3_1:8353418-8353437 | None:intergenic | 50.0% | |
| CCACCGTACAAATGAAGCCA+TGG | + | chr3_1:8353415-8353434 | Msa0347350:intron | 50.0% | |
| ! | GTCGTGTTGGTATCCGATAC+TGG | - | chr3_1:8353695-8353714 | None:intergenic | 50.0% |
| CCTTTCACAAGCCGGTTGTG+TGG | - | chr3_1:8349191-8349210 | None:intergenic | 55.0% | |
| !! | CCACACAACCGGCTTGTGAA+AGG | + | chr3_1:8349188-8349207 | Msa0347350:intron | 55.0% |
| TCCGTTTGTCACACTGGCAG+GGG | - | chr3_1:8349436-8349455 | None:intergenic | 55.0% | |
| CATCCGTTTGTCACACTGGC+AGG | - | chr3_1:8349438-8349457 | None:intergenic | 55.0% | |
| GGCACATTCCCAGGGAATCT+AGG | + | chr3_1:8349578-8349597 | Msa0347350:intron | 55.0% | |
| GCAGCAGCTGAAGCGCAATT+AGG | + | chr3_1:8350273-8350292 | Msa0347350:CDS | 55.0% | |
| CGGGATCCTAGGTATGATCG+GGG | + | chr3_1:8352265-8352284 | Msa0347350:intron | 55.0% | |
| ACCCTTCCCCGATCATACCT+AGG | - | chr3_1:8352274-8352293 | None:intergenic | 55.0% | |
| CCGTTTGTCACACTGGCAGG+GGG | - | chr3_1:8349435-8349454 | None:intergenic | 60.0% | |
| CCCCCTGCCAGTGTGACAAA+CGG | + | chr3_1:8349432-8349451 | Msa0347350:intron | 60.0% | |
| GTGCTGTGGCCTATGGCGAA+TGG | - | chr3_1:8349960-8349979 | None:intergenic | 60.0% | |
| !! | TGGTGGGTTATGACCCGACC+TGG | + | chr3_1:8352612-8352631 | Msa0347350:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 8348730 | 8354409 | 8348730 | ID=Msa0347350;Name=Msa0347350 |
| chr3_1 | mRNA | 8348730 | 8354409 | 8348730 | ID=Msa0347350-mRNA-1;Parent=Msa0347350;Name=Msa0347350-mRNA-1;_AED=0.04;_eAED=0.04;_QI=156|1|1|1|0.66|0.5|4|202|152 |
| chr3_1 | exon | 8348730 | 8348873 | 8348730 | ID=Msa0347350-mRNA-1:exon:2366;Parent=Msa0347350-mRNA-1 |
| chr3_1 | exon | 8350249 | 8350389 | 8350249 | ID=Msa0347350-mRNA-1:exon:2367;Parent=Msa0347350-mRNA-1 |
| chr3_1 | exon | 8350862 | 8350999 | 8350862 | ID=Msa0347350-mRNA-1:exon:2368;Parent=Msa0347350-mRNA-1 |
| chr3_1 | exon | 8354016 | 8354409 | 8354016 | ID=Msa0347350-mRNA-1:exon:2369;Parent=Msa0347350-mRNA-1 |
| chr3_1 | five_prime_UTR | 8348730 | 8348873 | 8348730 | ID=Msa0347350-mRNA-1:five_prime_utr;Parent=Msa0347350-mRNA-1 |
| chr3_1 | five_prime_UTR | 8350249 | 8350260 | 8350249 | ID=Msa0347350-mRNA-1:five_prime_utr;Parent=Msa0347350-mRNA-1 |
| chr3_1 | CDS | 8350261 | 8350389 | 8350261 | ID=Msa0347350-mRNA-1:cds;Parent=Msa0347350-mRNA-1 |
| chr3_1 | CDS | 8350862 | 8350999 | 8350862 | ID=Msa0347350-mRNA-1:cds;Parent=Msa0347350-mRNA-1 |
| chr3_1 | CDS | 8354016 | 8354207 | 8354016 | ID=Msa0347350-mRNA-1:cds;Parent=Msa0347350-mRNA-1 |
| chr3_1 | three_prime_UTR | 8354208 | 8354409 | 8354208 | ID=Msa0347350-mRNA-1:three_prime_utr;Parent=Msa0347350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
