AlfalfaGEDB | Msa0393940

M. sativa cultivar zhongmu-4 / Msa0393940

KEGG: -
GO: -
PFAM: PF05811.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0393940	XP_003598260.1	96.711	152	5	0	1	152	1	152	1.11e-104	305

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0393940	sp\|Q6PBU0\|F136A_DANRE	29.730	148	85	8	7	147	2	137	9.64e-11	59.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0393940	G7IYL4	96.711	152	5	0	1	152	1	152	5.29e-105	305

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011960	Msa0393940	0.805124	1.552903e-49	-8.615850e-47
Msa0019390	Msa0393940	0.803315	3.696047e-49	-8.615850e-47
Msa0033950	Msa0393940	0.832230	1.064465e-55	-8.615850e-47
Msa0034030	Msa0393940	0.831910	1.276724e-55	-8.615850e-47
Msa0054440	Msa0393940	0.811604	6.443209e-51	-8.615850e-47
Msa0105620	Msa0393940	0.810013	1.423620e-50	-8.615850e-47
Msa0115130	Msa0393940	0.801937	7.113692e-49	-8.615850e-47
Msa0115400	Msa0393940	0.802227	6.199916e-49	-8.615850e-47
Msa0128050	Msa0393940	0.832212	1.075076e-55	-8.615850e-47
Msa0146770	Msa0393940	0.814725	1.331214e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0393940	MtrunA17_Chr3g0079491	96.711	152	5	0	1	152	1	152	1.02e-108	305

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0393940	AT2G31725.1	62.416	149	55	1	1	148	1	149	9.15e-71	210
Msa0393940	AT1G05730.1	60.403	149	58	1	1	148	1	149	4.05e-68	203
Msa0393940	AT2G43720.1	51.389	144	69	1	6	148	4	147	2.87e-55	171
Msa0393940	AT1G05730.2	59.259	108	43	1	42	148	10	117	5.07e-45	144
Msa0393940	AT1G05740.1	45.652	138	62	2	1	125	1	138	1.49e-41	135
Msa0393940	AT2G43720.2	50.926	108	52	1	42	148	1	108	2.65e-39	129

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Find 42 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAGATGGCAAAGTTTC+AGG	0.195239	3_2:+8247947	Msa0393940:CDS
AACAAGTTGAAGGCTTCCTT+TGG	0.432439	3_2:+8251100	Msa0393940:CDS
AATTAGGTCAACAGAGAATT+AGG	0.348786	3_2:+8247281	Msa0393940:CDS
AATTGACATGGTCTTGAACA+GGG	0.588865	3_2:-8247348	None:intergenic
ACAGTCATTTGAAAATGAGA+TGG	0.593900	3_2:+8247935	Msa0393940:CDS
ACTGTTGTCTGGAATGCCAA+AGG	0.633485	3_2:-8251116	None:intergenic
AGACATTATTTAACTGTTTC+TGG	0.114136	3_2:+8251201	Msa0393940:three_prime_UTR
ATCATATCATTCATAGCTCC+AGG	0.479620	3_2:-8251022	None:intergenic
ATCGATGAATCAAGATGCAT+CGG	0.563189	3_2:-8251264	None:intergenic
ATTGACATGGTCTTGAACAG+GGG	0.619900	3_2:-8247347	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTAAGAGTAACTTCTACAA+AGG	-	chr3_2:8246082-8246101	None:intergenic	30.0%
AAACATGTGTTTATAAGTGG+GGG	-	chr3_2:8246163-8246182	None:intergenic	30.0%
CAAACATGTGTTTATAAGTG+GGG	-	chr3_2:8246164-8246183	None:intergenic	30.0%
GCAAACATGTGTTTATAAGT+GGG	-	chr3_2:8246165-8246184	None:intergenic	30.0%
TTATAGATCATCCATCAAAG+AGG	-	chr3_2:8246435-8246454	None:intergenic	30.0%
CTTTATAAAAGACGTCTCAT+TGG	-	chr3_2:8246633-8246652	None:intergenic	30.0%
ACATACACAACATTGATACA+CGG	-	chr3_2:8246861-8246880	None:intergenic	30.0%
TATAGGCACGTACAAATTAT+AGG	+	chr3_2:8247126-8247145	Msa0393940:intron	30.0%
CTGATATACTCACTGTAAAA+TGG	-	chr3_2:8247233-8247252	None:intergenic	30.0%
TTTACAGTGAGTATATCAGA+TGG	+	chr3_2:8247234-8247253	Msa0393940:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	8245567	8251349	8245567	ID=Msa0393940;Name=Msa0393940
chr3_2	mRNA	8245567	8251349	8245567	ID=Msa0393940-mRNA-1;Parent=Msa0393940;Name=Msa0393940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=164\|1\|1\|1\|0.66\|0.5\|4\|202\|152
chr3_2	exon	8245567	8245718	8245567	ID=Msa0393940-mRNA-1:exon:2121;Parent=Msa0393940-mRNA-1
chr3_2	exon	8247241	8247381	8247241	ID=Msa0393940-mRNA-1:exon:2122;Parent=Msa0393940-mRNA-1
chr3_2	exon	8247831	8247968	8247831	ID=Msa0393940-mRNA-1:exon:2123;Parent=Msa0393940-mRNA-1
chr3_2	exon	8250956	8251349	8250956	ID=Msa0393940-mRNA-1:exon:2124;Parent=Msa0393940-mRNA-1
chr3_2	five_prime_UTR	8245567	8245718	8245567	ID=Msa0393940-mRNA-1:five_prime_utr;Parent=Msa0393940-mRNA-1
chr3_2	five_prime_UTR	8247241	8247252	8247241	ID=Msa0393940-mRNA-1:five_prime_utr;Parent=Msa0393940-mRNA-1
chr3_2	CDS	8247253	8247381	8247253	ID=Msa0393940-mRNA-1:cds;Parent=Msa0393940-mRNA-1
chr3_2	CDS	8247831	8247968	8247831	ID=Msa0393940-mRNA-1:cds;Parent=Msa0393940-mRNA-1
chr3_2	CDS	8250956	8251147	8250956	ID=Msa0393940-mRNA-1:cds;Parent=Msa0393940-mRNA-1
chr3_2	three_prime_UTR	8251148	8251349	8251148	ID=Msa0393940-mRNA-1:three_prime_utr;Parent=Msa0393940-mRNA-1

Gene Sequence

>Msa0393940

ATGGATCACTTAGCAGCAGCTGAAGCGCAATTAGGTCAACAGAGAATTAGGCAGAAACTTGAGGAAGTGAATGTAGCTGCTCAAACTAATCTTGCCCCTGTTCAAGACCATGTCAATTATACTCTCCAGAAAGCCTATTTTAAATGTGCATATGAGTGCTTTGATAGAAGCAGAAAGCAGGAAGAGATAAGCAATTGTGTTGAAAATTGCAGTATTCCTCTTTCTAATGTGCAACAGTCATTTGAAAATGAGATGGCAAAGTTTCAGGAGAAGTTGAATAGATCTATGATGGTTTGTCAAGACAAGTATGAGGGATCTAAGCTCCAACAGAAACCTGGAGCTATGAATGATATGATTTCCTGTGCTGATGAAGCGATTCAAGACAGCATCAAGATGTTGCCGCTTCTTACAAACAAGTTGAAGGCTTCCTTTGGCATTCCAGACAACAGTTCTTCCTAG

Protein sequence

>Msa0393940

MDHLAAAEAQLGQQRIRQKLEEVNVAAQTNLAPVQDHVNYTLQKAYFKCAYECFDRSRKQEEISNCVENCSIPLSNVQQSFENEMAKFQEKLNRSMMVCQDKYEGSKLQQKPGAMNDMISCADEAIQDSIKMLPLLTNKLKASFGIPDNSSS*