Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393940 | XP_003598260.1 | 96.711 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 1.11e-104 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393940 | sp|Q6PBU0|F136A_DANRE | 29.730 | 148 | 85 | 8 | 7 | 147 | 2 | 137 | 9.64e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393940 | G7IYL4 | 96.711 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 5.29e-105 | 305 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0393940 | 0.805124 | 1.552903e-49 | -8.615850e-47 |
| Msa0019390 | Msa0393940 | 0.803315 | 3.696047e-49 | -8.615850e-47 |
| Msa0033950 | Msa0393940 | 0.832230 | 1.064465e-55 | -8.615850e-47 |
| Msa0034030 | Msa0393940 | 0.831910 | 1.276724e-55 | -8.615850e-47 |
| Msa0054440 | Msa0393940 | 0.811604 | 6.443209e-51 | -8.615850e-47 |
| Msa0105620 | Msa0393940 | 0.810013 | 1.423620e-50 | -8.615850e-47 |
| Msa0115130 | Msa0393940 | 0.801937 | 7.113692e-49 | -8.615850e-47 |
| Msa0115400 | Msa0393940 | 0.802227 | 6.199916e-49 | -8.615850e-47 |
| Msa0128050 | Msa0393940 | 0.832212 | 1.075076e-55 | -8.615850e-47 |
| Msa0146770 | Msa0393940 | 0.814725 | 1.331214e-51 | -8.615850e-47 |
| Msa0189300 | Msa0393940 | 0.830865 | 2.308394e-55 | -8.615850e-47 |
| Msa0231660 | Msa0393940 | 0.808479 | 3.034607e-50 | -8.615850e-47 |
| Msa0393940 | Msa0482130 | 0.810514 | 1.110000e-50 | -8.615850e-47 |
| Msa0393940 | Msa0489410 | 0.828835 | 7.206829e-55 | -8.615850e-47 |
| Msa0393940 | Msa0542090 | 0.831089 | 2.034203e-55 | -8.615850e-47 |
| Msa0393940 | Msa0542130 | 0.832543 | 8.905303e-56 | -8.615850e-47 |
| Msa0393940 | Msa0554290 | 0.806178 | 9.333195e-50 | -8.615850e-47 |
| Msa0393940 | Msa0581280 | 0.810931 | 9.015657e-51 | -8.615850e-47 |
| Msa0393940 | Msa0605000 | 0.828476 | 8.801517e-55 | -8.615850e-47 |
| Msa0393940 | Msa0648780 | 0.808717 | 2.699544e-50 | -8.615850e-47 |
| Msa0393940 | Msa0685140 | 0.833490 | 5.174870e-56 | -8.615850e-47 |
| Msa0393940 | Msa0719610 | 0.812370 | 4.386208e-51 | -8.615850e-47 |
| Msa0393940 | Msa0763330 | 0.823043 | 1.712798e-53 | -8.615850e-47 |
| Msa0393940 | Msa0772480 | 0.823760 | 1.164187e-53 | -8.615850e-47 |
| Msa0393940 | Msa0798440 | 0.811200 | 7.884418e-51 | -8.615850e-47 |
| Msa0393940 | Msa0830540 | 0.813498 | 2.483250e-51 | -8.615850e-47 |
| Msa0393940 | Msa0945440 | 0.830109 | 3.533674e-55 | -8.615850e-47 |
| Msa0393940 | Msa1128570 | 0.807846 | 4.139479e-50 | -8.615850e-47 |
| Msa0393940 | Msa1153060 | 0.802429 | 5.632808e-49 | -8.615850e-47 |
| Msa0393940 | Msa1181250 | 0.811868 | 5.643526e-51 | -8.615850e-47 |
| Msa0393940 | Msa1181330 | 0.811220 | 7.807660e-51 | -8.615850e-47 |
| Msa0393940 | Msa1209260 | 0.814589 | 1.426640e-51 | -8.615850e-47 |
| Msa0393940 | Msa1400220 | 0.831923 | 1.267601e-55 | -8.615850e-47 |
| Msa0393940 | Msa1436520 | 0.803752 | 3.000153e-49 | -8.615850e-47 |
| Msa0393940 | Msa1457920 | 0.807972 | 3.893114e-50 | -8.615850e-47 |
| Msa0347350 | Msa0393940 | 0.801983 | 6.959742e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393940 | MtrunA17_Chr3g0079491 | 96.711 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 1.02e-108 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393940 | AT2G31725.1 | 62.416 | 149 | 55 | 1 | 1 | 148 | 1 | 149 | 9.15e-71 | 210 |
| Msa0393940 | AT1G05730.1 | 60.403 | 149 | 58 | 1 | 1 | 148 | 1 | 149 | 4.05e-68 | 203 |
| Msa0393940 | AT2G43720.1 | 51.389 | 144 | 69 | 1 | 6 | 148 | 4 | 147 | 2.87e-55 | 171 |
| Msa0393940 | AT1G05730.2 | 59.259 | 108 | 43 | 1 | 42 | 148 | 10 | 117 | 5.07e-45 | 144 |
| Msa0393940 | AT1G05740.1 | 45.652 | 138 | 62 | 2 | 1 | 125 | 1 | 138 | 1.49e-41 | 135 |
| Msa0393940 | AT2G43720.2 | 50.926 | 108 | 52 | 1 | 42 | 148 | 1 | 108 | 2.65e-39 | 129 |
Find 42 sgRNAs with CRISPR-Local
Find 389 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTACGAAAGGGTTTA+AGG | 0.111268 | 3_2:-8245587 | None:intergenic |
| AGACATTATTTAACTGTTTC+TGG | 0.114136 | 3_2:+8251201 | Msa0393940:three_prime_UTR |
| AAATGAGATGGCAAAGTTTC+AGG | 0.195239 | 3_2:+8247947 | Msa0393940:CDS |
| TGAGAAAATAAAATCTTTCT+AGG | 0.212124 | 3_2:-8251143 | None:intergenic |
| CTTCAGTTGCAAAAGAAAAT+TGG | 0.224745 | 3_2:+8251174 | Msa0393940:three_prime_UTR |
| CTCATATGCACATTTAAAAT+AGG | 0.309655 | 3_2:-8247835 | None:intergenic |
| TTCTCTACGAAAGGGTTTAA+GGG | 0.340029 | 3_2:-8245586 | None:intergenic |
| GGAAGGAAACAAACTGGGTT+TGG | 0.342720 | 3_2:-8245680 | None:intergenic |
| AATTAGGTCAACAGAGAATT+AGG | 0.348786 | 3_2:+8247281 | Msa0393940:CDS |
| CCTTCCAATCACACATTCTC+AGG | 0.372472 | 3_2:+8245697 | Msa0393940:five_prime_UTR |
| TGCATCGGCATTCAAATTAC+AGG | 0.384744 | 3_2:-8251249 | None:intergenic |
| GCAGCAGCTGAAGCGCAATT+AGG | 0.389975 | 3_2:+8247265 | Msa0393940:CDS |
| TAATTGACATGGTCTTGAAC+AGG | 0.399803 | 3_2:-8247349 | None:intergenic |
| AACAAGTTGAAGGCTTCCTT+TGG | 0.432439 | 3_2:+8251100 | Msa0393940:CDS |
| CTAACCTGAGAATGTGTGAT+TGG | 0.446872 | 3_2:-8245701 | None:intergenic |
| TTCTAGGAAGAACTGTTGTC+TGG | 0.450400 | 3_2:-8251127 | None:intergenic |
| GCTTCTTACAAACAAGTTGA+AGG | 0.450651 | 3_2:+8251090 | Msa0393940:CDS |
| TCATAGCTCCAGGTTTCTGT+TGG | 0.458233 | 3_2:-8251012 | None:intergenic |
| GAAGTTGAATAGATCTATGA+TGG | 0.466964 | 3_2:+8250958 | Msa0393940:CDS |
| ATCATATCATTCATAGCTCC+AGG | 0.479620 | 3_2:-8251022 | None:intergenic |
| TTCAACTTGTTTGTAAGAAG+CGG | 0.487256 | 3_2:-8251088 | None:intergenic |
| GTGATTGGAAGGAAACAAAC+TGG | 0.491174 | 3_2:-8245686 | None:intergenic |
| TCTAAGCTCCAACAGAAACC+TGG | 0.500351 | 3_2:+8251004 | Msa0393940:CDS |
| GGTTTGTCAAGACAAGTATG+AGG | 0.511683 | 3_2:+8250979 | Msa0393940:CDS |
| GACTGTTGCACATTAGAAAG+AGG | 0.512334 | 3_2:-8247918 | None:intergenic |
| CCATGTCAATTATACTCTCC+AGG | 0.522500 | 3_2:+8247360 | Msa0393940:CDS |
| CTTTGATAGAAGCAGAAAGC+AGG | 0.531953 | 3_2:+8247860 | Msa0393940:CDS |
| CTTTCGTAGAGAAGAGGAAA+AGG | 0.537549 | 3_2:+8245596 | Msa0393940:five_prime_UTR |
| TAAACCCTTTCGTAGAGAAG+AGG | 0.539246 | 3_2:+8245590 | Msa0393940:five_prime_UTR |
| CCTGAGAATGTGTGATTGGA+AGG | 0.545691 | 3_2:-8245697 | None:intergenic |
| TTGAATCGCTTCATCAGCAC+AGG | 0.551044 | 3_2:-8251047 | None:intergenic |
| ATCGATGAATCAAGATGCAT+CGG | 0.563189 | 3_2:-8251264 | None:intergenic |
| GAGAATTAGGCAGAAACTTG+AGG | 0.580267 | 3_2:+8247294 | Msa0393940:CDS |
| TATTGTTGAAAATTCTTATG+CGG | 0.580848 | 3_2:-8245619 | None:intergenic |
| TTTACAGTGAGTATATCAGA+TGG | 0.582686 | 3_2:+8247234 | Msa0393940:intron |
| AATTGACATGGTCTTGAACA+GGG | 0.588865 | 3_2:-8247348 | None:intergenic |
| ACAGTCATTTGAAAATGAGA+TGG | 0.593900 | 3_2:+8247935 | Msa0393940:CDS |
| CCTGGAGAGTATAATTGACA+TGG | 0.606570 | 3_2:-8247360 | None:intergenic |
| ATTGACATGGTCTTGAACAG+GGG | 0.619900 | 3_2:-8247347 | None:intergenic |
| ACTGTTGTCTGGAATGCCAA+AGG | 0.633485 | 3_2:-8251116 | None:intergenic |
| GTTTGTCAAGACAAGTATGA+GGG | 0.640452 | 3_2:+8250980 | Msa0393940:CDS |
| TGATTGGAAGGAAACAAACT+GGG | 0.705523 | 3_2:-8245685 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAAGTTTGATTTTTTAT+CGG | + | chr3_2:8247004-8247023 | Msa0393940:intron | 10.0% |
| !! | AATTTGAATCAAAATAAAAA+AGG | - | chr3_2:8247581-8247600 | None:intergenic | 10.0% |
| !!! | TTTGAAATTTTAATATAGAT+AGG | + | chr3_2:8247711-8247730 | Msa0393940:intron | 10.0% |
| !!! | TTTGAATTGCTTTTAAAAAA+AGG | - | chr3_2:8246739-8246758 | None:intergenic | 15.0% |
| !!! | TTTATAATTCTTGGTTTTAA+AGG | + | chr3_2:8247649-8247668 | Msa0393940:intron | 15.0% |
| !!! | TATTAAAATTTCAAAGCATT+TGG | - | chr3_2:8247706-8247725 | None:intergenic | 15.0% |
| !! | AATTCTATTTATCAGTAAAA+GGG | - | chr3_2:8247772-8247791 | None:intergenic | 15.0% |
| !! | AAATTCTATTTATCAGTAAA+AGG | - | chr3_2:8247773-8247792 | None:intergenic | 15.0% |
| !! | GAAATAATTAAGATAGAAAA+AGG | + | chr3_2:8249966-8249985 | Msa0393940:intron | 15.0% |
| !!! | AAATTAATTTTCTATGATGT+GGG | + | chr3_2:8250058-8250077 | Msa0393940:intron | 15.0% |
| !! | TCAAAAGTTAAATTAATACA+AGG | - | chr3_2:8250845-8250864 | None:intergenic | 15.0% |
| !! | TATTGTTGAAAATTCTTATG+CGG | - | chr3_2:8245622-8245641 | None:intergenic | 20.0% |
| !! | AAAGCAAAAAAATTGAAGAA+TGG | - | chr3_2:8245744-8245763 | None:intergenic | 20.0% |
| !! | TGTCTTTAATATCTGATTTA+AGG | + | chr3_2:8245942-8245961 | Msa0393940:intron | 20.0% |
| !!! | ATTTAAGACCTTATAGTATA+TGG | + | chr3_2:8245998-8246017 | Msa0393940:intron | 20.0% |
| !!! | TTTTTCAAACAAGAAAGTTT+AGG | - | chr3_2:8246535-8246554 | None:intergenic | 20.0% |
| !! | AAAAATCAAACTTATAAGCA+TGG | - | chr3_2:8247001-8247020 | None:intergenic | 20.0% |
| !!! | GTAATATTGAATGGTTTTAT+TGG | + | chr3_2:8247470-8247489 | Msa0393940:intron | 20.0% |
| !! | TGAATCAAAATAAAAAAGGA+AGG | - | chr3_2:8247577-8247596 | None:intergenic | 20.0% |
| !! | TTGCATATAATGGTAATATT+CGG | + | chr3_2:8247742-8247761 | Msa0393940:intron | 20.0% |
| !! | TAGAATCAAATTAAAAGAAG+TGG | - | chr3_2:8248034-8248053 | None:intergenic | 20.0% |
| !!! | ATGTTTAGTTCTAATCAAAT+TGG | - | chr3_2:8248221-8248240 | None:intergenic | 20.0% |
| !! | TGCTTTCAATATTATAGAAT+AGG | + | chr3_2:8248240-8248259 | Msa0393940:intron | 20.0% |
| !! | GCTTTCAATATTATAGAATA+GGG | + | chr3_2:8248241-8248260 | Msa0393940:intron | 20.0% |
| !!! | ATAAACTCATGTCATTTATT+TGG | + | chr3_2:8248458-8248477 | Msa0393940:intron | 20.0% |
| !! | AAACCATTTAGAAAGATTAA+GGG | - | chr3_2:8248683-8248702 | None:intergenic | 20.0% |
| !! | TAAACCATTTAGAAAGATTA+AGG | - | chr3_2:8248684-8248703 | None:intergenic | 20.0% |
| !! | AAAAAATTCTTAAGTTTGAG+TGG | + | chr3_2:8249004-8249023 | Msa0393940:intron | 20.0% |
| !! | AATTAAAAGTAGGATGAAAA+TGG | - | chr3_2:8249058-8249077 | None:intergenic | 20.0% |
| !!! | TGTTTTTTATAATGTGGAAA+AGG | - | chr3_2:8250006-8250025 | None:intergenic | 20.0% |
| !!! | ACACATTGTTTTTTATAATG+TGG | - | chr3_2:8250012-8250031 | None:intergenic | 20.0% |
| !!! | TAGATCTTTTTACATGTTTT+TGG | + | chr3_2:8250031-8250050 | Msa0393940:intron | 20.0% |
| !!! | AGATCTTTTTACATGTTTTT+GGG | + | chr3_2:8250032-8250051 | Msa0393940:intron | 20.0% |
| !! | CACATCATAGAAAATTAATT+TGG | - | chr3_2:8250059-8250078 | None:intergenic | 20.0% |
| !!! | CAAATTAATTTTCTATGATG+TGG | + | chr3_2:8250057-8250076 | Msa0393940:intron | 20.0% |
| !!! | AAATTAAGTGTTGTAGAAAA+CGG | - | chr3_2:8250218-8250237 | None:intergenic | 20.0% |
| !!! | TTCATAAATTTTTCAGTAGT+TGG | + | chr3_2:8250246-8250265 | Msa0393940:intron | 20.0% |
| !! | GAATAAGCGTAATAAATTAT+AGG | - | chr3_2:8250747-8250766 | None:intergenic | 20.0% |
| !! | TGAGAAAATAAAATCTTTCT+AGG | - | chr3_2:8251146-8251165 | None:intergenic | 20.0% |
| ! | ATTAGGGAAAAACAAATCAA+GGG | - | chr3_2:8245854-8245873 | None:intergenic | 25.0% |
| ! | AATTAGGGAAAAACAAATCA+AGG | - | chr3_2:8245855-8245874 | None:intergenic | 25.0% |
| ! | CGAAGAGAAAATCAAAATTA+GGG | - | chr3_2:8245870-8245889 | None:intergenic | 25.0% |
| ! | ACGAAGAGAAAATCAAAATT+AGG | - | chr3_2:8245871-8245890 | None:intergenic | 25.0% |
| !!! | TAATTTTGATTTTCTCTTCG+TGG | + | chr3_2:8245870-8245889 | Msa0393940:intron | 25.0% |
| !!! | AATTTTGATTTTCTCTTCGT+GGG | + | chr3_2:8245871-8245890 | Msa0393940:intron | 25.0% |
| !! | GTCTCAAAAATTGTTTCTTT+GGG | + | chr3_2:8245893-8245912 | Msa0393940:intron | 25.0% |
| ! | TTTATAAAAGACGTCTCATT+GGG | - | chr3_2:8246632-8246651 | None:intergenic | 25.0% |
| ! | TATAAAGGATAAAACCATGA+AGG | + | chr3_2:8246646-8246665 | Msa0393940:intron | 25.0% |
| !! | CTAAAGTACTAACTTTAAAG+AGG | + | chr3_2:8247179-8247198 | Msa0393940:intron | 25.0% |
| ! | TGATATACTCACTGTAAAAT+GGG | - | chr3_2:8247232-8247251 | None:intergenic | 25.0% |
| ! | TAATGTCATAAGTACTACAA+TGG | + | chr3_2:8247398-8247417 | Msa0393940:intron | 25.0% |
| ! | TCTTTCGTTGTAATATTGAA+TGG | + | chr3_2:8247461-8247480 | Msa0393940:intron | 25.0% |
| !! | GACATGTCTTTTATAATTCT+TGG | + | chr3_2:8247640-8247659 | Msa0393940:intron | 25.0% |
| ! | CAATCAAACAATCAACAATA+CGG | - | chr3_2:8247801-8247820 | None:intergenic | 25.0% |
| !! | CTCATATGCACATTTAAAAT+AGG | - | chr3_2:8247838-8247857 | None:intergenic | 25.0% |
| !! | TCTAACTTTTAAATGATGAC+TGG | + | chr3_2:8248050-8248069 | Msa0393940:intron | 25.0% |
| !! | CTAACTTTTAAATGATGACT+GGG | + | chr3_2:8248051-8248070 | Msa0393940:intron | 25.0% |
| ! | TTTCATCAGATAGAGAAAAT+AGG | - | chr3_2:8248170-8248189 | None:intergenic | 25.0% |
| !!! | ATTTTAACATGCTATCAAAG+TGG | + | chr3_2:8248189-8248208 | Msa0393940:intron | 25.0% |
| !!! | TTAGTTCTAATCAAATTGGA+TGG | - | chr3_2:8248217-8248236 | None:intergenic | 25.0% |
| !!! | ATTTTGGTAACAAATCTATG+TGG | - | chr3_2:8248290-8248309 | None:intergenic | 25.0% |
| ! | AGAAACATGGTGTATATAAT+AGG | + | chr3_2:8248561-8248580 | Msa0393940:intron | 25.0% |
| ! | TTTAGAAAGATTAAGGGAAA+TGG | - | chr3_2:8248677-8248696 | None:intergenic | 25.0% |
| ! | TTTCCCTTAATCTTTCTAAA+TGG | + | chr3_2:8248677-8248696 | Msa0393940:intron | 25.0% |
| ! | ATTCATAGTACTTAACATTG+TGG | + | chr3_2:8248898-8248917 | Msa0393940:intron | 25.0% |
| ! | GCTTATTATTGTCCAATATT+TGG | + | chr3_2:8248944-8248963 | Msa0393940:intron | 25.0% |
| !!! | TCATCCTACTTTTAATTCTA+TGG | + | chr3_2:8249061-8249080 | Msa0393940:intron | 25.0% |
| ! | TCAACCATAGAATTAAAAGT+AGG | - | chr3_2:8249068-8249087 | None:intergenic | 25.0% |
| ! | GTTACAAGAAAACCAAAAAA+GGG | - | chr3_2:8249513-8249532 | None:intergenic | 25.0% |
| ! | AGTTACAAGAAAACCAAAAA+AGG | - | chr3_2:8249514-8249533 | None:intergenic | 25.0% |
| !!! | TTTTTTGGTTTTCTTGTAAC+TGG | + | chr3_2:8249513-8249532 | Msa0393940:intron | 25.0% |
| !!! | TTTTTGGTTTTCTTGTAACT+GGG | + | chr3_2:8249514-8249533 | Msa0393940:intron | 25.0% |
| ! | AGGAACATATAATACATTCA+TGG | - | chr3_2:8249719-8249738 | None:intergenic | 25.0% |
| ! | CACAAATCAAAATTTAGAGA+TGG | - | chr3_2:8249749-8249768 | None:intergenic | 25.0% |
| !! | GTAAAAGAAAGTATATCGAA+TGG | - | chr3_2:8249787-8249806 | None:intergenic | 25.0% |
| ! | TATTGAGGTAAGCAAAAATT+AGG | - | chr3_2:8250161-8250180 | None:intergenic | 25.0% |
| ! | ATCAGAGAATATATCTATTG+AGG | - | chr3_2:8250176-8250195 | None:intergenic | 25.0% |
| ! | ATTACAGTCTCAATTGTATT+CGG | + | chr3_2:8250331-8250350 | Msa0393940:intron | 25.0% |
| ! | ATATATGCATAAAAAAGCCA+TGG | - | chr3_2:8250431-8250450 | None:intergenic | 25.0% |
| !! | AAGATTTCAATCTGAAATGT+CGG | - | chr3_2:8250610-8250629 | None:intergenic | 25.0% |
| !! | CCATTTTCTCAAATTATTAC+CGG | + | chr3_2:8250683-8250702 | Msa0393940:intron | 25.0% |
| ! | CACTATTAGATCAAATACAA+AGG | - | chr3_2:8250919-8250938 | None:intergenic | 25.0% |
| !! | ATCTAATAGTGTTTTCAACA+TGG | + | chr3_2:8250928-8250947 | Msa0393940:intron | 25.0% |
| ! | AGACATTATTTAACTGTTTC+TGG | + | chr3_2:8251201-8251220 | Msa0393940:three_prime_UTR | 25.0% |
| ! | GGTCTCAAAAATTGTTTCTT+TGG | + | chr3_2:8245892-8245911 | Msa0393940:intron | 30.0% |
| TCTAAGAGTAACTTCTACAA+AGG | - | chr3_2:8246082-8246101 | None:intergenic | 30.0% | |
| AAACATGTGTTTATAAGTGG+GGG | - | chr3_2:8246163-8246182 | None:intergenic | 30.0% | |
| CAAACATGTGTTTATAAGTG+GGG | - | chr3_2:8246164-8246183 | None:intergenic | 30.0% | |
| GCAAACATGTGTTTATAAGT+GGG | - | chr3_2:8246165-8246184 | None:intergenic | 30.0% | |
| TTATAGATCATCCATCAAAG+AGG | - | chr3_2:8246435-8246454 | None:intergenic | 30.0% | |
| ! | TGTTGTTTATAAACTACCCT+TGG | - | chr3_2:8246595-8246614 | None:intergenic | 30.0% |
| CTTTATAAAAGACGTCTCAT+TGG | - | chr3_2:8246633-8246652 | None:intergenic | 30.0% | |
| ! | CAATGAGACGTCTTTTATAA+AGG | + | chr3_2:8246631-8246650 | Msa0393940:intron | 30.0% |
| ACATACACAACATTGATACA+CGG | - | chr3_2:8246861-8246880 | None:intergenic | 30.0% | |
| !! | ATTTGGTGTACTGTTATCAA+TGG | - | chr3_2:8247043-8247062 | None:intergenic | 30.0% |
| !! | CTTTTAATTGAAGGCGTATT+TGG | - | chr3_2:8247060-8247079 | None:intergenic | 30.0% |
| TATAGGCACGTACAAATTAT+AGG | + | chr3_2:8247126-8247145 | Msa0393940:intron | 30.0% | |
| CTGATATACTCACTGTAAAA+TGG | - | chr3_2:8247233-8247252 | None:intergenic | 30.0% | |
| TTTACAGTGAGTATATCAGA+TGG | + | chr3_2:8247234-8247253 | Msa0393940:intron | 30.0% | |
| AATTAGGTCAACAGAGAATT+AGG | + | chr3_2:8247281-8247300 | Msa0393940:CDS | 30.0% | |
| AAAAAAGGAAGGAAAAATGC+AGG | - | chr3_2:8247566-8247585 | None:intergenic | 30.0% | |
| ! | GGTAATGCTTTTGCATATAA+TGG | + | chr3_2:8247732-8247751 | Msa0393940:intron | 30.0% |
| ACAGTCATTTGAAAATGAGA+TGG | + | chr3_2:8247935-8247954 | Msa0393940:CDS | 30.0% | |
| TGAAATAGAGACAAGAGAAA+AGG | - | chr3_2:8248116-8248135 | None:intergenic | 30.0% | |
| CAGATAGAGAAAATAGGAAA+GGG | - | chr3_2:8248164-8248183 | None:intergenic | 30.0% | |
| TCAGATAGAGAAAATAGGAA+AGG | - | chr3_2:8248165-8248184 | None:intergenic | 30.0% | |
| !! | TTTTTCCCACTAGTTGATAT+TGG | + | chr3_2:8248413-8248432 | Msa0393940:intron | 30.0% |
| TTGTTGTCAAATTTCTGCTA+TGG | - | chr3_2:8248643-8248662 | None:intergenic | 30.0% | |
| TAGCAGAAATTTGACAACAA+CGG | + | chr3_2:8248643-8248662 | Msa0393940:intron | 30.0% | |
| ! | GTTTAAGCTATAGTTTTCCT+TGG | + | chr3_2:8248699-8248718 | Msa0393940:intron | 30.0% |
| CACATAAAGCAAGATAAGAT+TGG | - | chr3_2:8248875-8248894 | None:intergenic | 30.0% | |
| CAATAATAAGCAAGCAAACT+TGG | - | chr3_2:8248935-8248954 | None:intergenic | 30.0% | |
| TAAAAGTAGGATGAAAATGG+AGG | - | chr3_2:8249055-8249074 | None:intergenic | 30.0% | |
| GTTCATTATACAAAGTGACA+GGG | - | chr3_2:8249106-8249125 | None:intergenic | 30.0% | |
| CACTTTGTATAATGAACCTA+AGG | + | chr3_2:8249109-8249128 | Msa0393940:intron | 30.0% | |
| TAAATAGTAGGATCGTAACA+CGG | + | chr3_2:8249213-8249232 | Msa0393940:intron | 30.0% | |
| ATCGTTAAATAGTCCTACAT+CGG | + | chr3_2:8249242-8249261 | Msa0393940:intron | 30.0% | |
| CTGAGAATGTGTTTATAAGT+GGG | + | chr3_2:8249277-8249296 | Msa0393940:intron | 30.0% | |
| TGAGAATGTGTTTATAAGTG+GGG | + | chr3_2:8249278-8249297 | Msa0393940:intron | 30.0% | |
| AGATGTATGTAGCAGTTATT+GGG | + | chr3_2:8249377-8249396 | Msa0393940:intron | 30.0% | |
| !! | AATTCATTGGTGTTAATGAC+TGG | - | chr3_2:8249466-8249485 | None:intergenic | 30.0% |
| GTCATTAACACCAATGAATT+TGG | + | chr3_2:8249466-8249485 | Msa0393940:intron | 30.0% | |
| ATTAACACCAATGAATTTGG+TGG | + | chr3_2:8249469-8249488 | Msa0393940:intron | 30.0% | |
| ACATTCATGGTAGTCAAAAT+CGG | - | chr3_2:8249706-8249725 | None:intergenic | 30.0% | |
| CAAAATTTAGAGATGGCAAT+TGG | - | chr3_2:8249742-8249761 | None:intergenic | 30.0% | |
| ! | ACTTTCTTTTACCTTTACTC+AGG | + | chr3_2:8249795-8249814 | Msa0393940:intron | 30.0% |
| AGACATATAAAGACAAACCA+CGG | - | chr3_2:8249837-8249856 | None:intergenic | 30.0% | |
| ! | GTGGGTTTCTTAATTTTCTT+TGG | + | chr3_2:8250076-8250095 | Msa0393940:intron | 30.0% |
| ! | ACCTAGTCTAGAGTTTAAAT+GGG | - | chr3_2:8250483-8250502 | None:intergenic | 30.0% |
| ATTGAAATCTTCTCCAGTAT+CGG | + | chr3_2:8250619-8250638 | Msa0393940:intron | 30.0% | |
| CCGGTAATAATTTGAGAAAA+TGG | - | chr3_2:8250686-8250705 | None:intergenic | 30.0% | |
| TCTTATATGACAATGCTTCA+AGG | - | chr3_2:8250896-8250915 | None:intergenic | 30.0% | |
| GAAGTTGAATAGATCTATGA+TGG | + | chr3_2:8250958-8250977 | Msa0393940:CDS | 30.0% | |
| ! | TTCAACTTGTTTGTAAGAAG+CGG | - | chr3_2:8251091-8251110 | None:intergenic | 30.0% |
| CTTCAGTTGCAAAAGAAAAT+TGG | + | chr3_2:8251174-8251193 | Msa0393940:three_prime_UTR | 30.0% | |
| TTCTCTACGAAAGGGTTTAA+GGG | - | chr3_2:8245589-8245608 | None:intergenic | 35.0% | |
| ! | TTTTCCTCTTCTCTACGAAA+GGG | - | chr3_2:8245597-8245616 | None:intergenic | 35.0% |
| TGATTGGAAGGAAACAAACT+GGG | - | chr3_2:8245688-8245707 | None:intergenic | 35.0% | |
| AGGTCATGCCATATACTATA+AGG | - | chr3_2:8246009-8246028 | None:intergenic | 35.0% | |
| ACTTCTACAAAGGACAAAAC+CGG | - | chr3_2:8246072-8246091 | None:intergenic | 35.0% | |
| GAAGTTACTCTTAGAAATCG+TGG | + | chr3_2:8246087-8246106 | Msa0393940:intron | 35.0% | |
| TTACTCTTAGAAATCGTGGT+TGG | + | chr3_2:8246091-8246110 | Msa0393940:intron | 35.0% | |
| TACTCTTAGAAATCGTGGTT+GGG | + | chr3_2:8246092-8246111 | Msa0393940:intron | 35.0% | |
| AACATGTGTTTATAAGTGGG+GGG | - | chr3_2:8246162-8246181 | None:intergenic | 35.0% | |
| CGCAAACATGTGTTTATAAG+TGG | - | chr3_2:8246166-8246185 | None:intergenic | 35.0% | |
| GTCCTACATTGGATAAAACA+TGG | - | chr3_2:8246189-8246208 | None:intergenic | 35.0% | |
| TTGGACACATAAGACACTTT+AGG | - | chr3_2:8246336-8246355 | None:intergenic | 35.0% | |
| ! | TAAAGTGTCTTATGTGTCCA+AGG | + | chr3_2:8246335-8246354 | Msa0393940:intron | 35.0% |
| TTATTACTCGTTGAGCTTTG+AGG | + | chr3_2:8246472-8246491 | Msa0393940:intron | 35.0% | |
| CAAGAAAGTTTAGGTGAGTT+GGG | - | chr3_2:8246526-8246545 | None:intergenic | 35.0% | |
| ACAAGAAAGTTTAGGTGAGT+TGG | - | chr3_2:8246527-8246546 | None:intergenic | 35.0% | |
| AAAATAAGTCCGACATTCCT+TGG | + | chr3_2:8246560-8246579 | Msa0393940:intron | 35.0% | |
| AAATAAGTCCGACATTCCTT+GGG | + | chr3_2:8246561-8246580 | Msa0393940:intron | 35.0% | |
| GCACCTATTATATCTGTCAT+AGG | + | chr3_2:8246967-8246986 | Msa0393940:intron | 35.0% | |
| CAGCCTATGACAGATATAAT+AGG | - | chr3_2:8246973-8246992 | None:intergenic | 35.0% | |
| !! | TGTTATCAATGGCGGATTAT+GGG | - | chr3_2:8247032-8247051 | None:intergenic | 35.0% |
| ! | AATTGACATGGTCTTGAACA+GGG | - | chr3_2:8247351-8247370 | None:intergenic | 35.0% |
| ! | TAATTGACATGGTCTTGAAC+AGG | - | chr3_2:8247352-8247371 | None:intergenic | 35.0% |
| GCAAGAAAGTTAATACCATC+TGG | + | chr3_2:8247524-8247543 | Msa0393940:intron | 35.0% | |
| CAAAAAATTAGCTAGCCAGA+TGG | - | chr3_2:8247542-8247561 | None:intergenic | 35.0% | |
| AAATGAGATGGCAAAGTTTC+AGG | + | chr3_2:8247947-8247966 | Msa0393940:CDS | 35.0% | |
| TGGAACTGGAAATCTAAACA+AGG | - | chr3_2:8248270-8248289 | None:intergenic | 35.0% | |
| GTAACAAATCTATGTGGAAC+TGG | - | chr3_2:8248284-8248303 | None:intergenic | 35.0% | |
| ! | CTGGATGACGATTACAATTT+TGG | - | chr3_2:8248306-8248325 | None:intergenic | 35.0% |
| GAGGAAGACAAGTATAAAAC+TGG | - | chr3_2:8248325-8248344 | None:intergenic | 35.0% | |
| TACTTGTCTTCCTCTTAGTT+TGG | + | chr3_2:8248331-8248350 | Msa0393940:intron | 35.0% | |
| AACATAGACACCAAACTAAG+AGG | - | chr3_2:8248344-8248363 | None:intergenic | 35.0% | |
| TCAACTAGTGGGAAAAAACT+TGG | - | chr3_2:8248410-8248429 | None:intergenic | 35.0% | |
| TGTAGCCAATATCAACTAGT+GGG | - | chr3_2:8248421-8248440 | None:intergenic | 35.0% | |
| ATGTAGCCAATATCAACTAG+TGG | - | chr3_2:8248422-8248441 | None:intergenic | 35.0% | |
| !! | GCGATTGATAACACTGTTTT+GGG | - | chr3_2:8248484-8248503 | None:intergenic | 35.0% |
| CAAAACAGTGTTATCAATCG+CGG | + | chr3_2:8248483-8248502 | Msa0393940:intron | 35.0% | |
| AACAATCCGCCACATAAATA+TGG | + | chr3_2:8248522-8248541 | Msa0393940:intron | 35.0% | |
| ! | TATAATAGGTGTTGCGCTTA+TGG | + | chr3_2:8248575-8248594 | Msa0393940:intron | 35.0% |
| AAGGGTAGTCTAATAGTGAA+AGG | - | chr3_2:8248733-8248752 | None:intergenic | 35.0% | |
| ATAAAGGACATTGACCAGAA+GGG | - | chr3_2:8248751-8248770 | None:intergenic | 35.0% | |
| GAAGACAAAAACACGGATAA+AGG | - | chr3_2:8248767-8248786 | None:intergenic | 35.0% | |
| ! | ACTGTAGAGATTCGTTTTAG+TGG | - | chr3_2:8248806-8248825 | None:intergenic | 35.0% |
| GGTTCATTATACAAAGTGAC+AGG | - | chr3_2:8249107-8249126 | None:intergenic | 35.0% | |
| !! | TCTCATGTTTTAAGCACCTT+AGG | - | chr3_2:8249128-8249147 | None:intergenic | 35.0% |
| GTCACAAGATCGTAAATAGT+AGG | + | chr3_2:8249201-8249220 | Msa0393940:intron | 35.0% | |
| CCACTTATAAACACATTCTC+AGG | - | chr3_2:8249279-8249298 | None:intergenic | 35.0% | |
| CCTGAGAATGTGTTTATAAG+TGG | + | chr3_2:8249276-8249295 | Msa0393940:intron | 35.0% | |
| GAGAATGTGTTTATAAGTGG+GGG | + | chr3_2:8249279-8249298 | Msa0393940:intron | 35.0% | |
| GAGATGTATGTAGCAGTTAT+TGG | + | chr3_2:8249376-8249395 | Msa0393940:intron | 35.0% | |
| TGGGACAATGATCATTGTAT+TGG | + | chr3_2:8249396-8249415 | Msa0393940:intron | 35.0% | |
| GGGACAATGATCATTGTATT+GGG | + | chr3_2:8249397-8249416 | Msa0393940:intron | 35.0% | |
| AATACAGCAGTTAATCACAC+TGG | + | chr3_2:8249423-8249442 | Msa0393940:intron | 35.0% | |
| ATACAGCAGTTAATCACACT+GGG | + | chr3_2:8249424-8249443 | Msa0393940:intron | 35.0% | |
| !! | AATTTTTAGGCTTTCCAGGT+CGG | - | chr3_2:8249569-8249588 | None:intergenic | 35.0% |
| ! | CTACGCATTCTGCAATTTTT+AGG | - | chr3_2:8249582-8249601 | None:intergenic | 35.0% |
| ATTCTGCTTATCACAGAACA+CGG | + | chr3_2:8249647-8249666 | Msa0393940:intron | 35.0% | |
| AATTTAGAGATGGCAATTGG+AGG | - | chr3_2:8249739-8249758 | None:intergenic | 35.0% | |
| ! | TTCTTTTACCTTTACTCAGG+TGG | + | chr3_2:8249798-8249817 | Msa0393940:intron | 35.0% |
| AGATGATCAATGAGATTGTG+AGG | - | chr3_2:8250114-8250133 | None:intergenic | 35.0% | |
| GTAGAAAACGGCTAATAGTA+AGG | - | chr3_2:8250206-8250225 | None:intergenic | 35.0% | |
| ATACCATGGCTTCATTTGTA+CGG | - | chr3_2:8250361-8250380 | None:intergenic | 35.0% | |
| TACAAATGAAGCCATGGTAT+AGG | + | chr3_2:8250361-8250380 | Msa0393940:intron | 35.0% | |
| ! | GTCTTGATTTTCCTATACCA+TGG | - | chr3_2:8250375-8250394 | None:intergenic | 35.0% |
| ! | ATAGTGAAGCGTTAACAACT+CGG | - | chr3_2:8250397-8250416 | None:intergenic | 35.0% |
| ! | CCTAGTCTAGAGTTTAAATG+GGG | - | chr3_2:8250482-8250501 | None:intergenic | 35.0% |
| ! | GACCTAGTCTAGAGTTTAAA+TGG | - | chr3_2:8250484-8250503 | None:intergenic | 35.0% |
| TGAAAGCTGCTAGAAAATCA+AGG | + | chr3_2:8250508-8250527 | Msa0393940:intron | 35.0% | |
| ! | TAGTGTTTTCAACATGGTAC+AGG | + | chr3_2:8250934-8250953 | Msa0393940:intron | 35.0% |
| GTTTGTCAAGACAAGTATGA+GGG | + | chr3_2:8250980-8250999 | Msa0393940:CDS | 35.0% | |
| ATCATATCATTCATAGCTCC+AGG | - | chr3_2:8251025-8251044 | None:intergenic | 35.0% | |
| ! | GCTTCTTACAAACAAGTTGA+AGG | + | chr3_2:8251090-8251109 | Msa0393940:CDS | 35.0% |
| ATCGATGAATCAAGATGCAT+CGG | - | chr3_2:8251267-8251286 | None:intergenic | 35.0% | |
| CTTCTCTACGAAAGGGTTTA+AGG | - | chr3_2:8245590-8245609 | None:intergenic | 40.0% | |
| TAAACCCTTTCGTAGAGAAG+AGG | + | chr3_2:8245590-8245609 | Msa0393940:five_prime_UTR | 40.0% | |
| ! | CTTTTCCTCTTCTCTACGAA+AGG | - | chr3_2:8245598-8245617 | None:intergenic | 40.0% |
| CTTTCGTAGAGAAGAGGAAA+AGG | + | chr3_2:8245596-8245615 | Msa0393940:five_prime_UTR | 40.0% | |
| GTGATTGGAAGGAAACAAAC+TGG | - | chr3_2:8245689-8245708 | None:intergenic | 40.0% | |
| CTAACCTGAGAATGTGTGAT+TGG | - | chr3_2:8245704-8245723 | None:intergenic | 40.0% | |
| TATATGGCATGACCTCAAGT+TGG | + | chr3_2:8246014-8246033 | Msa0393940:intron | 40.0% | |
| TTCTACAAAGGACAAAACCG+GGG | - | chr3_2:8246070-8246089 | None:intergenic | 40.0% | |
| CTTCTACAAAGGACAAAACC+GGG | - | chr3_2:8246071-8246090 | None:intergenic | 40.0% | |
| !! | TTTCACAAGCCAGTTTTGTG+GGG | - | chr3_2:8246128-8246147 | None:intergenic | 40.0% |
| !! | CTTTCACAAGCCAGTTTTGT+GGG | - | chr3_2:8246129-8246148 | None:intergenic | 40.0% |
| ! | CGCCATGTTTTATCCAATGT+AGG | + | chr3_2:8246184-8246203 | Msa0393940:intron | 40.0% |
| AAAGTAGTGTGTCGGATTTG+TGG | + | chr3_2:8246223-8246242 | Msa0393940:intron | 40.0% | |
| AGTTGAGACGAAGGAGTAAA+GGG | - | chr3_2:8246286-8246305 | None:intergenic | 40.0% | |
| TTCGTCTCAACTCTCAACTA+GGG | + | chr3_2:8246294-8246313 | Msa0393940:intron | 40.0% | |
| CACATAAGACACTTTAGGTG+TGG | - | chr3_2:8246331-8246350 | None:intergenic | 40.0% | |
| ! | AAGGTTGGCTCAATTGGTAA+GGG | + | chr3_2:8246358-8246377 | Msa0393940:intron | 40.0% |
| AATTGAACCCACAACCTTGT+GGG | - | chr3_2:8246393-8246412 | None:intergenic | 40.0% | |
| AGCTCAACGAGTAATAACAG+AGG | - | chr3_2:8246469-8246488 | None:intergenic | 40.0% | |
| !!! | TTCAAGGTATTGTCCGCTTT+TGG | - | chr3_2:8246679-8246698 | None:intergenic | 40.0% |
| AAAGCGGACAATACCTTGAA+AGG | + | chr3_2:8246679-8246698 | Msa0393940:intron | 40.0% | |
| ! | GACAGATATAATAGGTGCTG+TGG | - | chr3_2:8246965-8246984 | None:intergenic | 40.0% |
| !! | TTATCAATGGCGGATTATGG+GGG | - | chr3_2:8247030-8247049 | None:intergenic | 40.0% |
| !! | GTTATCAATGGCGGATTATG+GGG | - | chr3_2:8247031-8247050 | None:intergenic | 40.0% |
| !! | CTGTTATCAATGGCGGATTA+TGG | - | chr3_2:8247033-8247052 | None:intergenic | 40.0% |
| TGGTGTACTGTTATCAATGG+CGG | - | chr3_2:8247040-8247059 | None:intergenic | 40.0% | |
| ! | ACGCCTTCAATTAAAAGCGT+CGG | + | chr3_2:8247063-8247082 | Msa0393940:intron | 40.0% |
| GAGAATTAGGCAGAAACTTG+AGG | + | chr3_2:8247294-8247313 | Msa0393940:CDS | 40.0% | |
| ! | ATTGACATGGTCTTGAACAG+GGG | - | chr3_2:8247350-8247369 | None:intergenic | 40.0% |
| ! | CCTGGAGAGTATAATTGACA+TGG | - | chr3_2:8247363-8247382 | None:intergenic | 40.0% |
| CCATGTCAATTATACTCTCC+AGG | + | chr3_2:8247360-8247379 | Msa0393940:CDS | 40.0% | |
| TATACTCTCCAGGTTCTTTC+TGG | + | chr3_2:8247370-8247389 | Msa0393940:intron | 40.0% | |
| TTAAGAGACCAGAAAGAACC+TGG | - | chr3_2:8247381-8247400 | None:intergenic | 40.0% | |
| CTTTGATAGAAGCAGAAAGC+AGG | + | chr3_2:8247860-8247879 | Msa0393940:CDS | 40.0% | |
| GACTGTTGCACATTAGAAAG+AGG | - | chr3_2:8247921-8247940 | None:intergenic | 40.0% | |
| AATGATGACTGGGCTGATTA+AGG | + | chr3_2:8248061-8248080 | Msa0393940:intron | 40.0% | |
| ATGATGACTGGGCTGATTAA+GGG | + | chr3_2:8248062-8248081 | Msa0393940:intron | 40.0% | |
| GTGGGAAAAAACTTGGTTGT+CGG | - | chr3_2:8248403-8248422 | None:intergenic | 40.0% | |
| !! | CGCGATTGATAACACTGTTT+TGG | - | chr3_2:8248485-8248504 | None:intergenic | 40.0% |
| ! | GTGTTATCAATCGCGGATTA+CGG | + | chr3_2:8248490-8248509 | Msa0393940:intron | 40.0% |
| TGCAGCATATGTCAGAAACA+TGG | + | chr3_2:8248548-8248567 | Msa0393940:intron | 40.0% | |
| TCACTATTAGACTACCCTTC+TGG | + | chr3_2:8248734-8248753 | Msa0393940:intron | 40.0% | |
| GATAAAGGACATTGACCAGA+AGG | - | chr3_2:8248752-8248771 | None:intergenic | 40.0% | |
| TGTTGTGCAAGGCCAAATAT+TGG | - | chr3_2:8248959-8248978 | None:intergenic | 40.0% | |
| AAGACCTACAATGTTGTGCA+AGG | - | chr3_2:8248970-8248989 | None:intergenic | 40.0% | |
| CACAACATTGTAGGTCTTAG+AGG | + | chr3_2:8248972-8248991 | Msa0393940:intron | 40.0% | |
| AACATTGTAGGTCTTAGAGG+CGG | + | chr3_2:8248975-8248994 | Msa0393940:intron | 40.0% | |
| CATGAGATACGATGTGTTCA+AGG | + | chr3_2:8249141-8249160 | Msa0393940:intron | 40.0% | |
| GTGTTCAAGGTAGTCAGAAT+CGG | + | chr3_2:8249154-8249173 | Msa0393940:intron | 40.0% | |
| TGTTCAAGGTAGTCAGAATC+GGG | + | chr3_2:8249155-8249174 | Msa0393940:intron | 40.0% | |
| ATCGGGATCCTAGATATGAT+CGG | + | chr3_2:8249172-8249191 | Msa0393940:intron | 40.0% | |
| TCATACAGTCACAGCTTGTA+AGG | - | chr3_2:8249314-8249333 | None:intergenic | 40.0% | |
| TTACAAGCTGTGACTGTATG+AGG | + | chr3_2:8249313-8249332 | Msa0393940:intron | 40.0% | |
| TACAAGCTGTGACTGTATGA+GGG | + | chr3_2:8249314-8249333 | Msa0393940:intron | 40.0% | |
| !! | ATTGGTGTTAATGACTGGAG+CGG | - | chr3_2:8249461-8249480 | None:intergenic | 40.0% |
| !!! | GTGGGTTATGAACCCTTTTT+TGG | + | chr3_2:8249498-8249517 | Msa0393940:intron | 40.0% |
| !! | ATTTTTAGGCTTTCCAGGTC+GGG | - | chr3_2:8249568-8249587 | None:intergenic | 40.0% |
| !! | CTGCAATTTTTAGGCTTTCC+AGG | - | chr3_2:8249573-8249592 | None:intergenic | 40.0% |
| CAGAATGCGTAGAAACGTAA+CGG | + | chr3_2:8249590-8249609 | Msa0393940:intron | 40.0% | |
| ! | TTGATAGCAGACAGTGGAAT+CGG | - | chr3_2:8249621-8249640 | None:intergenic | 40.0% |
| ! | CGTAAATTGATAGCAGACAG+TGG | - | chr3_2:8249627-8249646 | None:intergenic | 40.0% |
| TATGCAACAAGTGTACATGC+TGG | + | chr3_2:8249902-8249921 | Msa0393940:intron | 40.0% | |
| ACGGCTAATAGTAAGGTAGT+TGG | - | chr3_2:8250199-8250218 | None:intergenic | 40.0% | |
| AGCTCATAACACTAGAGAGA+AGG | - | chr3_2:8250284-8250303 | None:intergenic | 40.0% | |
| CACTATTTGTTCCACTTCCA+TGG | + | chr3_2:8250411-8250430 | Msa0393940:intron | 40.0% | |
| GCATAAAAAAGCCATGGAAG+TGG | - | chr3_2:8250425-8250444 | None:intergenic | 40.0% | |
| ! | TAAATGGGGACAAGAAGTGT+TGG | - | chr3_2:8250468-8250487 | None:intergenic | 40.0% |
| CCCCATTTAAACTCTAGACT+AGG | + | chr3_2:8250479-8250498 | Msa0393940:intron | 40.0% | |
| GAAGTCATAACCACAGATGT+CGG | - | chr3_2:8250664-8250683 | None:intergenic | 40.0% | |
| GGTTTGTCAAGACAAGTATG+AGG | + | chr3_2:8250979-8250998 | Msa0393940:CDS | 40.0% | |
| ! | AACAAGTTGAAGGCTTCCTT+TGG | + | chr3_2:8251100-8251119 | Msa0393940:CDS | 40.0% |
| ! | TTCTAGGAAGAACTGTTGTC+TGG | - | chr3_2:8251130-8251149 | None:intergenic | 40.0% |
| ! | TGCATCGGCATTCAAATTAC+AGG | - | chr3_2:8251252-8251271 | None:intergenic | 40.0% |
| GGAAGGAAACAAACTGGGTT+TGG | - | chr3_2:8245683-8245702 | None:intergenic | 45.0% | |
| CCTGAGAATGTGTGATTGGA+AGG | - | chr3_2:8245700-8245719 | None:intergenic | 45.0% | |
| CCTTCCAATCACACATTCTC+AGG | + | chr3_2:8245697-8245716 | Msa0393940:five_prime_UTR | 45.0% | |
| AAGATGGTGTGACCAACTTG+AGG | - | chr3_2:8246029-8246048 | None:intergenic | 45.0% | |
| TTGGTCACACCATCTTAGCT+TGG | + | chr3_2:8246033-8246052 | Msa0393940:intron | 45.0% | |
| TGGTCACACCATCTTAGCTT+GGG | + | chr3_2:8246034-8246053 | Msa0393940:intron | 45.0% | |
| AACATGCACCCAAGCTAAGA+TGG | - | chr3_2:8246045-8246064 | None:intergenic | 45.0% | |
| ATTGCACAACCCCACAAAAC+TGG | + | chr3_2:8246116-8246135 | Msa0393940:intron | 45.0% | |
| ! | CCTTTCACAAGCCAGTTTTG+TGG | - | chr3_2:8246130-8246149 | None:intergenic | 45.0% |
| !! | CCACAAAACTGGCTTGTGAA+AGG | + | chr3_2:8246127-8246146 | Msa0393940:intron | 45.0% |
| GGCGTTAAAGAGTCCTACAT+TGG | - | chr3_2:8246200-8246219 | None:intergenic | 45.0% | |
| AATCCGACACACTACTTTCG+AGG | - | chr3_2:8246221-8246240 | None:intergenic | 45.0% | |
| GTGTCGGATTTGTGGAACAT+TGG | + | chr3_2:8246231-8246250 | Msa0393940:intron | 45.0% | |
| GAGTTGAGACGAAGGAGTAA+AGG | - | chr3_2:8246287-8246306 | None:intergenic | 45.0% | |
| CTAGTTGAGAGTTGAGACGA+AGG | - | chr3_2:8246295-8246314 | None:intergenic | 45.0% | |
| CTTCGTCTCAACTCTCAACT+AGG | + | chr3_2:8246293-8246312 | Msa0393940:intron | 45.0% | |
| ACACTTTAGGTGTGGCGAAA+CGG | - | chr3_2:8246323-8246342 | None:intergenic | 45.0% | |
| GTGTCTTATGTGTCCAAGGA+AGG | + | chr3_2:8246339-8246358 | Msa0393940:intron | 45.0% | |
| CTTATGTGTCCAAGGAAGGT+TGG | + | chr3_2:8246343-8246362 | Msa0393940:intron | 45.0% | |
| ! | GAAGGTTGGCTCAATTGGTA+AGG | + | chr3_2:8246357-8246376 | Msa0393940:intron | 45.0% |
| GAATTGAACCCACAACCTTG+TGG | - | chr3_2:8246394-8246413 | None:intergenic | 45.0% | |
| ATCAAAGAGGTCGTCACACT+GGG | - | chr3_2:8246422-8246441 | None:intergenic | 45.0% | |
| ! | TTTGAGGTCTGACATGACCT+TGG | + | chr3_2:8246488-8246507 | Msa0393940:intron | 45.0% |
| CCTAGATTCCCAAGGAATGT+CGG | - | chr3_2:8246572-8246591 | None:intergenic | 45.0% | |
| !! | TCTCATTGGGTTGAGGAAAG+CGG | - | chr3_2:8246619-8246638 | None:intergenic | 45.0% |
| ! | AAAGACGTCTCATTGGGTTG+AGG | - | chr3_2:8246626-8246645 | None:intergenic | 45.0% |
| !! | CTTTTGGTGCAAGTCCTTCA+TGG | - | chr3_2:8246663-8246682 | None:intergenic | 45.0% |
| TGAAGGACTTGCACCAAAAG+CGG | + | chr3_2:8246663-8246682 | Msa0393940:intron | 45.0% | |
| TACCTTGAAAGGTGGTGTGA+TGG | + | chr3_2:8246690-8246709 | Msa0393940:intron | 45.0% | |
| ACCTTGAAAGGTGGTGTGAT+GGG | + | chr3_2:8246691-8246710 | Msa0393940:intron | 45.0% | |
| CGTGCATGTGAGTACTTCAT+TGG | - | chr3_2:8246763-8246782 | None:intergenic | 45.0% | |
| GTCTTGCGTCTAATATGTGC+TGG | - | chr3_2:8246892-8246911 | None:intergenic | 45.0% | |
| GAATGGCACAGAATCTGTCA+TGG | - | chr3_2:8246934-8246953 | None:intergenic | 45.0% | |
| ! | ATAATAGGTGCTGTGGCCTA+TGG | - | chr3_2:8246958-8246977 | None:intergenic | 45.0% |
| !! | GCACCGACGCTTTTAATTGA+AGG | - | chr3_2:8247069-8247088 | None:intergenic | 45.0% |
| ! | TTATCAATCGCGGATTACGG+TGG | + | chr3_2:8248493-8248512 | Msa0393940:intron | 45.0% |
| !! | TTATGTGGCGGATTGTTAGC+TGG | - | chr3_2:8248519-8248538 | None:intergenic | 45.0% |
| GCAGTGCCATATTTATGTGG+CGG | - | chr3_2:8248531-8248550 | None:intergenic | 45.0% | |
| GCTGCAGTGCCATATTTATG+TGG | - | chr3_2:8248534-8248553 | None:intergenic | 45.0% | |
| TGCATTGTGGCGTTATAGCA+TGG | - | chr3_2:8248619-8248638 | None:intergenic | 45.0% | |
| TTTCTGCTATGGCTGCATTG+TGG | - | chr3_2:8248632-8248651 | None:intergenic | 45.0% | |
| AGTGAAAGGTAGTGAGACCA+AGG | - | chr3_2:8248719-8248738 | None:intergenic | 45.0% | |
| GCGCGTTGAAGACAAAAACA+CGG | - | chr3_2:8248774-8248793 | None:intergenic | 45.0% | |
| !! | TTGGCCTTGCACAACATTGT+AGG | + | chr3_2:8248963-8248982 | Msa0393940:intron | 45.0% |
| GGATGAAAATGGAGGAAGTC+TGG | - | chr3_2:8249047-8249066 | None:intergenic | 45.0% | |
| CAAAGTGACAGGGAGATAGA+AGG | - | chr3_2:8249096-8249115 | None:intergenic | 45.0% | |
| TCGGGATCCTAGATATGATC+GGG | + | chr3_2:8249173-8249192 | Msa0393940:intron | 45.0% | |
| ATCCTAGATATGATCGGGGA+AGG | + | chr3_2:8249178-8249197 | Msa0393940:intron | 45.0% | |
| TCCTAGATATGATCGGGGAA+GGG | + | chr3_2:8249179-8249198 | Msa0393940:intron | 45.0% | |
| GGTCATCTCTTATCCGATGT+AGG | - | chr3_2:8249258-8249277 | None:intergenic | 45.0% | |
| CCACACTCCACCAAATTCAT+TGG | - | chr3_2:8249479-8249498 | None:intergenic | 45.0% | |
| ! | CCAATGAATTTGGTGGAGTG+TGG | + | chr3_2:8249476-8249495 | Msa0393940:intron | 45.0% |
| ! | ATGAATTTGGTGGAGTGTGG+TGG | + | chr3_2:8249479-8249498 | Msa0393940:intron | 45.0% |
| ! | TGAATTTGGTGGAGTGTGGT+GGG | + | chr3_2:8249480-8249499 | Msa0393940:intron | 45.0% |
| !! | GGGTCGTTTTAACAGAAACC+AGG | + | chr3_2:8249534-8249553 | Msa0393940:intron | 45.0% |
| TTATCACAGAACACGGCGAT+AGG | + | chr3_2:8249654-8249673 | Msa0393940:intron | 45.0% | |
| TATCACAGAACACGGCGATA+GGG | + | chr3_2:8249655-8249674 | Msa0393940:intron | 45.0% | |
| CAAGACTTCCACCTGAGTAA+AGG | - | chr3_2:8249809-8249828 | None:intergenic | 45.0% | |
| GTAATGCGCTTCAGAGTTTC+AGG | - | chr3_2:8250316-8250335 | None:intergenic | 45.0% | |
| !! | ACAAGAAGTGTTGGCAGTCA+TGG | - | chr3_2:8250459-8250478 | None:intergenic | 45.0% |
| ATGTCGGTATCTTGTCGTGT+TGG | - | chr3_2:8250648-8250667 | None:intergenic | 45.0% | |
| TAAGACACAGACACAGAGAC+CGG | - | chr3_2:8250705-8250724 | None:intergenic | 45.0% | |
| TCTAAGCTCCAACAGAAACC+TGG | + | chr3_2:8251004-8251023 | Msa0393940:CDS | 45.0% | |
| TCATAGCTCCAGGTTTCTGT+TGG | - | chr3_2:8251015-8251034 | None:intergenic | 45.0% | |
| TTGAATCGCTTCATCAGCAC+AGG | - | chr3_2:8251050-8251069 | None:intergenic | 45.0% | |
| ! | ACTGTTGTCTGGAATGCCAA+AGG | - | chr3_2:8251119-8251138 | None:intergenic | 45.0% |
| !! | ATATACTATATTATATTTAT+AGG | + | chr3_2:8247109-8247128 | Msa0393940:intron | 5.0% |
| ACGCCTCGAAAGTAGTGTGT+CGG | + | chr3_2:8246215-8246234 | Msa0393940:intron | 50.0% | |
| GGTCGTCTAAGCCACTATGA+TGG | + | chr3_2:8246252-8246271 | Msa0393940:intron | 50.0% | |
| CCAATTGAGCCAACCTTCCT+TGG | - | chr3_2:8246355-8246374 | None:intergenic | 50.0% | |
| ! | CCAAGGAAGGTTGGCTCAAT+TGG | + | chr3_2:8246352-8246371 | Msa0393940:intron | 50.0% |
| ! | AAGGGATTGACTCACCCACA+AGG | + | chr3_2:8246376-8246395 | Msa0393940:intron | 50.0% |
| TTGACTCACCCACAAGGTTG+TGG | + | chr3_2:8246382-8246401 | Msa0393940:intron | 50.0% | |
| TGACTCACCCACAAGGTTGT+GGG | + | chr3_2:8246383-8246402 | Msa0393940:intron | 50.0% | |
| TCAAAGAGGTCGTCACACTG+GGG | - | chr3_2:8246421-8246440 | None:intergenic | 50.0% | |
| CATCAAAGAGGTCGTCACAC+TGG | - | chr3_2:8246423-8246442 | None:intergenic | 50.0% | |
| CAGTGTGACGACCTCTTTGA+TGG | + | chr3_2:8246421-8246440 | Msa0393940:intron | 50.0% | |
| ! | TTTAGGTGAGTTGGGCTCCA+AGG | - | chr3_2:8246518-8246537 | None:intergenic | 50.0% |
| CCGACATTCCTTGGGAATCT+AGG | + | chr3_2:8246569-8246588 | Msa0393940:intron | 50.0% | |
| TTCCTTGGGAATCTAGGCCA+AGG | + | chr3_2:8246575-8246594 | Msa0393940:intron | 50.0% | |
| TCCTTGGGAATCTAGGCCAA+GGG | + | chr3_2:8246576-8246595 | Msa0393940:intron | 50.0% | |
| GCGGACAATACCTTGAAAGG+TGG | + | chr3_2:8246682-8246701 | Msa0393940:intron | 50.0% | |
| TGGCACAGAATCTGTCATGG+CGG | - | chr3_2:8246931-8246950 | None:intergenic | 50.0% | |
| ! | GATTCTGTGCCATTCGCCAT+AGG | + | chr3_2:8246939-8246958 | Msa0393940:intron | 50.0% |
| CGGGATCCTAGATATGATCG+GGG | + | chr3_2:8249174-8249193 | Msa0393940:intron | 50.0% | |
| ACCCTTCCCCGATCATATCT+AGG | - | chr3_2:8249183-8249202 | None:intergenic | 50.0% | |
| AGCTGTGACTGTATGAGGGA+AGG | + | chr3_2:8249318-8249337 | Msa0393940:intron | 50.0% | |
| ! | GTGGAAGTCTTGTGTTTCCG+TGG | + | chr3_2:8249817-8249836 | Msa0393940:intron | 50.0% |
| TACATGCTGGCGTCATCTCT+TGG | + | chr3_2:8249915-8249934 | Msa0393940:intron | 50.0% | |
| CCATGGCTTCATTTGTACGG+TGG | - | chr3_2:8250358-8250377 | None:intergenic | 50.0% | |
| CCACCGTACAAATGAAGCCA+TGG | + | chr3_2:8250355-8250374 | Msa0393940:intron | 50.0% | |
| ! | GTCGTGTTGGTATCCGATAC+TGG | - | chr3_2:8250635-8250654 | None:intergenic | 50.0% |
| CGACAAGATACCGACATCTG+TGG | + | chr3_2:8250651-8250670 | Msa0393940:intron | 50.0% | |
| GGGTCTGTCAGCCATCATAG+TGG | - | chr3_2:8246266-8246285 | None:intergenic | 55.0% | |
| CAAAGAGGTCGTCACACTGG+GGG | - | chr3_2:8246420-8246439 | None:intergenic | 55.0% | |
| GACATGACCTTGGTGAGCCT+TGG | + | chr3_2:8246498-8246517 | Msa0393940:intron | 55.0% | |
| ACCCTTGGCCTAGATTCCCA+AGG | - | chr3_2:8246580-8246599 | None:intergenic | 55.0% | |
| GCCCATCACACCACCTTTCA+AGG | - | chr3_2:8246695-8246714 | None:intergenic | 55.0% | |
| !! | AAGGTGGTGTGATGGGCTTG+AGG | + | chr3_2:8246698-8246717 | Msa0393940:intron | 55.0% |
| !! | TGGTGTGATGGGCTTGAGGT+CGG | + | chr3_2:8246702-8246721 | Msa0393940:intron | 55.0% |
| GCAGCAGCTGAAGCGCAATT+AGG | + | chr3_2:8247265-8247284 | Msa0393940:CDS | 55.0% | |
| GCTTGGGTGCATGTTCTCCC+CGG | + | chr3_2:8246050-8246069 | Msa0393940:intron | 60.0% | |
| TTGGGCTCCAAGGCTCACCA+AGG | - | chr3_2:8246508-8246527 | None:intergenic | 60.0% | |
| GTGCTGTGGCCTATGGCGAA+TGG | - | chr3_2:8246951-8246970 | None:intergenic | 60.0% | |
| GAGGTCGTCACACTGGGGGA+GGG | - | chr3_2:8246416-8246435 | None:intergenic | 65.0% | |
| AGAGGTCGTCACACTGGGGG+AGG | - | chr3_2:8246417-8246436 | None:intergenic | 65.0% | |
| CCAGGTCGGGTCACACGTCC+TGG | - | chr3_2:8249555-8249574 | None:intergenic | 70.0% | |
| CCAGGACGTGTGACCCGACC+TGG | + | chr3_2:8249552-8249571 | Msa0393940:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 8245567 | 8251349 | 8245567 | ID=Msa0393940;Name=Msa0393940 |
| chr3_2 | mRNA | 8245567 | 8251349 | 8245567 | ID=Msa0393940-mRNA-1;Parent=Msa0393940;Name=Msa0393940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=164|1|1|1|0.66|0.5|4|202|152 |
| chr3_2 | exon | 8245567 | 8245718 | 8245567 | ID=Msa0393940-mRNA-1:exon:2121;Parent=Msa0393940-mRNA-1 |
| chr3_2 | exon | 8247241 | 8247381 | 8247241 | ID=Msa0393940-mRNA-1:exon:2122;Parent=Msa0393940-mRNA-1 |
| chr3_2 | exon | 8247831 | 8247968 | 8247831 | ID=Msa0393940-mRNA-1:exon:2123;Parent=Msa0393940-mRNA-1 |
| chr3_2 | exon | 8250956 | 8251349 | 8250956 | ID=Msa0393940-mRNA-1:exon:2124;Parent=Msa0393940-mRNA-1 |
| chr3_2 | five_prime_UTR | 8245567 | 8245718 | 8245567 | ID=Msa0393940-mRNA-1:five_prime_utr;Parent=Msa0393940-mRNA-1 |
| chr3_2 | five_prime_UTR | 8247241 | 8247252 | 8247241 | ID=Msa0393940-mRNA-1:five_prime_utr;Parent=Msa0393940-mRNA-1 |
| chr3_2 | CDS | 8247253 | 8247381 | 8247253 | ID=Msa0393940-mRNA-1:cds;Parent=Msa0393940-mRNA-1 |
| chr3_2 | CDS | 8247831 | 8247968 | 8247831 | ID=Msa0393940-mRNA-1:cds;Parent=Msa0393940-mRNA-1 |
| chr3_2 | CDS | 8250956 | 8251147 | 8250956 | ID=Msa0393940-mRNA-1:cds;Parent=Msa0393940-mRNA-1 |
| chr3_2 | three_prime_UTR | 8251148 | 8251349 | 8251148 | ID=Msa0393940-mRNA-1:three_prime_utr;Parent=Msa0393940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
