Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347940 | XP_003598354.1 | 96.894 | 322 | 10 | 0 | 7 | 328 | 1 | 322 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347940 | sp|Q9LES3|AI5L2_ARATH | 52.396 | 313 | 120 | 8 | 20 | 328 | 10 | 297 | 2.66e-87 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347940 | G7IVG7 | 96.894 | 322 | 10 | 0 | 7 | 328 | 1 | 322 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0347940 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0347940 | Msa0347980 | 0.814854 | 1.246358e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347940 | MtrunA17_Chr3g0080341 | 96.894 | 322 | 10 | 0 | 7 | 328 | 1 | 322 | 0.0 | 647 |
| Msa0347940 | MtrunA17_Chr8g0355121 | 65.260 | 308 | 92 | 4 | 22 | 328 | 20 | 313 | 7.23e-138 | 393 |
| Msa0347940 | MtrunA17_Chr7g0254991 | 49.530 | 319 | 127 | 9 | 26 | 326 | 16 | 318 | 6.39e-84 | 256 |
| Msa0347940 | MtrunA17_Chr6g0460301 | 49.118 | 340 | 136 | 10 | 7 | 328 | 1 | 321 | 3.85e-80 | 246 |
| Msa0347940 | MtrunA17_Chr4g0044771 | 36.176 | 340 | 154 | 13 | 26 | 307 | 18 | 352 | 2.13e-42 | 150 |
| Msa0347940 | MtrunA17_Chr5g0440841 | 46.703 | 182 | 72 | 7 | 3 | 176 | 2 | 166 | 4.19e-35 | 128 |
| Msa0347940 | MtrunA17_Chr5g0440841 | 57.955 | 88 | 37 | 0 | 241 | 328 | 182 | 269 | 5.70e-23 | 96.3 |
| Msa0347940 | MtrunA17_Chr2g0321411 | 33.968 | 315 | 139 | 10 | 29 | 326 | 11 | 273 | 1.10e-33 | 125 |
| Msa0347940 | MtrunA17_Chr2g0321381 | 36.700 | 297 | 148 | 11 | 18 | 300 | 14 | 284 | 4.03e-28 | 110 |
| Msa0347940 | MtrunA17_Chr3g0133971 | 48.361 | 122 | 56 | 2 | 25 | 144 | 26 | 142 | 9.07e-27 | 109 |
| Msa0347940 | MtrunA17_Chr3g0133971 | 42.202 | 109 | 60 | 1 | 195 | 303 | 293 | 398 | 1.44e-17 | 83.2 |
| Msa0347940 | MtrunA17_Chr7g0266211 | 43.182 | 132 | 56 | 3 | 32 | 144 | 45 | 176 | 2.07e-20 | 91.3 |
| Msa0347940 | MtrunA17_Chr5g0424871 | 29.054 | 296 | 167 | 8 | 22 | 279 | 8 | 298 | 1.07e-19 | 87.8 |
| Msa0347940 | MtrunA17_Chr4g0051101 | 42.718 | 103 | 53 | 2 | 202 | 302 | 77 | 175 | 8.23e-14 | 69.3 |
| Msa0347940 | MtrunA17_Chr1g0201751 | 62.745 | 51 | 19 | 0 | 252 | 302 | 157 | 207 | 3.83e-12 | 65.5 |
| Msa0347940 | MtrunA17_Chr5g0405951 | 57.627 | 59 | 13 | 1 | 257 | 303 | 166 | 224 | 9.37e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347940 | AT3G56850.1 | 52.396 | 313 | 120 | 8 | 20 | 328 | 10 | 297 | 2.71e-88 | 267 |
| Msa0347940 | AT2G41070.4 | 48.418 | 316 | 101 | 10 | 16 | 328 | 15 | 271 | 5.04e-75 | 232 |
| Msa0347940 | AT2G41070.3 | 48.418 | 316 | 101 | 10 | 16 | 328 | 6 | 262 | 8.28e-75 | 231 |
| Msa0347940 | AT2G41070.1 | 48.418 | 316 | 101 | 10 | 16 | 328 | 6 | 262 | 8.28e-75 | 231 |
| Msa0347940 | AT2G41070.2 | 48.418 | 316 | 101 | 10 | 16 | 328 | 6 | 262 | 8.28e-75 | 231 |
| Msa0347940 | AT2G41070.5 | 47.931 | 290 | 89 | 10 | 16 | 302 | 6 | 236 | 4.35e-64 | 203 |
| Msa0347940 | AT1G49720.1 | 34.320 | 338 | 162 | 7 | 24 | 302 | 21 | 357 | 3.81e-45 | 158 |
| Msa0347940 | AT1G49720.3 | 34.320 | 338 | 162 | 7 | 24 | 302 | 21 | 357 | 3.81e-45 | 158 |
| Msa0347940 | AT1G49720.2 | 34.320 | 338 | 162 | 7 | 24 | 302 | 21 | 357 | 4.94e-45 | 158 |
| Msa0347940 | AT2G36270.1 | 32.346 | 405 | 169 | 13 | 18 | 321 | 30 | 430 | 5.62e-37 | 137 |
| Msa0347940 | AT2G36270.2 | 32.346 | 405 | 169 | 13 | 18 | 321 | 30 | 430 | 5.62e-37 | 137 |
| Msa0347940 | AT2G36270.3 | 32.976 | 373 | 155 | 12 | 18 | 299 | 30 | 398 | 2.56e-35 | 133 |
| Msa0347940 | AT3G44460.1 | 36.875 | 320 | 143 | 13 | 5 | 300 | 7 | 291 | 8.37e-30 | 116 |
| Msa0347940 | AT3G19290.2 | 43.046 | 151 | 65 | 3 | 15 | 144 | 21 | 171 | 2.92e-25 | 105 |
| Msa0347940 | AT3G19290.4 | 43.046 | 151 | 65 | 3 | 15 | 144 | 21 | 171 | 3.88e-25 | 105 |
| Msa0347940 | AT3G19290.4 | 37.857 | 140 | 64 | 4 | 184 | 302 | 260 | 397 | 5.74e-14 | 72.8 |
| Msa0347940 | AT3G19290.1 | 43.046 | 151 | 65 | 3 | 15 | 144 | 21 | 171 | 4.31e-25 | 105 |
| Msa0347940 | AT3G19290.1 | 37.857 | 140 | 64 | 4 | 184 | 302 | 260 | 397 | 7.50e-14 | 72.4 |
| Msa0347940 | AT3G19290.5 | 43.046 | 151 | 65 | 3 | 15 | 144 | 21 | 171 | 4.31e-25 | 105 |
| Msa0347940 | AT3G19290.5 | 37.857 | 140 | 64 | 4 | 184 | 302 | 260 | 397 | 7.50e-14 | 72.4 |
| Msa0347940 | AT3G19290.3 | 43.046 | 151 | 65 | 3 | 15 | 144 | 21 | 171 | 4.75e-25 | 105 |
| Msa0347940 | AT3G19290.3 | 37.857 | 140 | 64 | 4 | 184 | 302 | 260 | 397 | 7.73e-14 | 72.4 |
| Msa0347940 | AT5G42910.1 | 28.533 | 368 | 175 | 13 | 26 | 325 | 20 | 367 | 2.29e-23 | 99.4 |
| Msa0347940 | AT4G34000.3 | 34.715 | 193 | 77 | 6 | 25 | 177 | 26 | 209 | 8.29e-22 | 95.9 |
| Msa0347940 | AT4G34000.3 | 60.000 | 60 | 24 | 0 | 243 | 302 | 359 | 418 | 1.73e-15 | 77.4 |
| Msa0347940 | AT4G34000.1 | 34.197 | 193 | 78 | 5 | 25 | 177 | 26 | 209 | 9.48e-22 | 95.9 |
| Msa0347940 | AT4G34000.1 | 60.000 | 65 | 25 | 1 | 243 | 307 | 359 | 422 | 2.47e-15 | 77.0 |
| Msa0347940 | AT4G34000.4 | 34.197 | 193 | 78 | 5 | 25 | 177 | 26 | 209 | 9.48e-22 | 95.9 |
| Msa0347940 | AT4G34000.4 | 60.000 | 65 | 25 | 1 | 243 | 307 | 359 | 422 | 2.47e-15 | 77.0 |
| Msa0347940 | AT4G34000.2 | 34.197 | 193 | 78 | 5 | 25 | 177 | 26 | 209 | 9.48e-22 | 95.9 |
| Msa0347940 | AT4G34000.2 | 60.000 | 65 | 25 | 1 | 243 | 307 | 359 | 422 | 2.47e-15 | 77.0 |
| Msa0347940 | AT1G45249.10 | 41.791 | 134 | 60 | 3 | 26 | 144 | 21 | 151 | 2.43e-21 | 94.0 |
| Msa0347940 | AT1G45249.5 | 41.791 | 134 | 60 | 3 | 26 | 144 | 21 | 151 | 2.43e-21 | 94.0 |
| Msa0347940 | AT1G45249.4 | 41.791 | 134 | 60 | 3 | 26 | 144 | 21 | 151 | 4.14e-21 | 93.6 |
| Msa0347940 | AT1G45249.8 | 41.791 | 134 | 60 | 3 | 26 | 144 | 21 | 151 | 4.14e-21 | 93.6 |
| Msa0347940 | AT1G45249.2 | 41.791 | 134 | 60 | 3 | 26 | 144 | 21 | 151 | 4.14e-21 | 93.6 |
| Msa0347940 | AT1G45249.9 | 41.791 | 134 | 60 | 3 | 26 | 144 | 21 | 151 | 4.14e-21 | 93.6 |
| Msa0347940 | AT1G45249.7 | 41.791 | 134 | 60 | 3 | 26 | 144 | 36 | 166 | 4.42e-21 | 93.6 |
| Msa0347940 | AT1G45249.7 | 39.860 | 143 | 61 | 5 | 201 | 326 | 295 | 429 | 1.30e-17 | 83.6 |
| Msa0347940 | AT1G45249.6 | 41.791 | 134 | 60 | 3 | 26 | 144 | 36 | 166 | 4.42e-21 | 93.6 |
| Msa0347940 | AT1G45249.6 | 39.860 | 143 | 61 | 5 | 201 | 326 | 295 | 429 | 1.30e-17 | 83.6 |
| Msa0347940 | AT1G45249.1 | 41.791 | 134 | 60 | 3 | 26 | 144 | 21 | 151 | 5.03e-21 | 93.6 |
| Msa0347940 | AT1G45249.1 | 39.860 | 143 | 61 | 5 | 201 | 326 | 280 | 414 | 1.10e-17 | 83.6 |
| Msa0347940 | AT1G45249.3 | 41.791 | 134 | 60 | 3 | 26 | 144 | 21 | 151 | 6.03e-21 | 93.2 |
| Msa0347940 | AT1G45249.3 | 37.013 | 154 | 61 | 6 | 201 | 326 | 280 | 425 | 7.24e-15 | 75.5 |
| Msa0347940 | AT4G35900.1 | 51.163 | 86 | 40 | 2 | 243 | 328 | 202 | 285 | 1.90e-16 | 78.6 |
| Msa0347940 | AT2G17770.2 | 48.837 | 86 | 42 | 2 | 243 | 328 | 112 | 195 | 1.86e-14 | 71.2 |
| Msa0347940 | AT1G03970.1 | 31.373 | 204 | 84 | 6 | 102 | 303 | 85 | 234 | 3.23e-14 | 72.0 |
| Msa0347940 | AT5G44080.1 | 32.353 | 204 | 91 | 8 | 102 | 303 | 120 | 278 | 3.70e-14 | 72.4 |
Find 77 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCGACGAAGCTGGCATTT+AGG | 0.252772 | 3_1:+9551141 | None:intergenic |
| CTTGCCTAACATCGAAACTA+TGG | 0.298577 | 3_1:-9553141 | Msa0347940:CDS |
| AGAAGACGGTTGATGAAGTT+TGG | 0.321664 | 3_1:-9552839 | Msa0347940:CDS |
| GATTCAACAACACTGACTTT+AGG | 0.341594 | 3_1:+9552666 | None:intergenic |
| GACCCCATAGTTTCGATGTT+AGG | 0.349341 | 3_1:+9553137 | None:intergenic |
| TTTGGGTGAGATGACATTAG+AGG | 0.364587 | 3_1:-9552757 | Msa0347940:CDS |
| TCAACCGTCTTCTTGCTTAA+CGG | 0.378968 | 3_1:+9552849 | None:intergenic |
| ACGAAGCTGGCATTTAGGTT+CGG | 0.387515 | 3_1:+9551146 | None:intergenic |
| TCAAGAGATGCAGTCTACTT+TGG | 0.394291 | 3_1:-9552775 | Msa0347940:CDS |
| GCCACCTGACCATCTGTATA+CGG | 0.395127 | 3_1:+9552483 | None:intergenic |
| CGAAGCTGGCATTTAGGTTC+GGG | 0.399153 | 3_1:+9551147 | None:intergenic |
| GGTTAAAGCAGGCGTTGTTT+CGG | 0.403853 | 3_1:-9552727 | Msa0347940:CDS |
| CAACCTAATCTGTCGTTAAC+CGG | 0.406252 | 3_1:-9552873 | Msa0347940:CDS |
| CAAGAGATGCAGTCTACTTT+GGG | 0.419918 | 3_1:-9552774 | Msa0347940:CDS |
| CAGAATCACTTAGGTGACTT+AGG | 0.427650 | 3_1:-9553020 | Msa0347940:CDS |
| AGAAGAGGATGATTAAGAAT+CGG | 0.435534 | 3_1:-9552362 | Msa0347940:CDS |
| TCAAGGTTCATACTACTTAG+TGG | 0.444599 | 3_1:+9552993 | None:intergenic |
| CCAGAGGCTGGAATTGCGGT+TGG | 0.448828 | 3_1:+9553084 | None:intergenic |
| GAAGAGGATGATTAAGAATC+GGG | 0.454965 | 3_1:-9552361 | Msa0347940:CDS |
| CAGTCATTGCACATGGCAGC+CGG | 0.472274 | 3_1:-9552525 | Msa0347940:CDS |
| CAAAGTCTCGCGTCTGGAAG+AGG | 0.475416 | 3_1:-9552176 | Msa0347940:CDS |
| CGCGCCAGAGGCTGGAATTG+CGG | 0.479085 | 3_1:+9553080 | None:intergenic |
| GGACCGGTTAACGACAGATT+AGG | 0.482657 | 3_1:+9552870 | None:intergenic |
| GCGCTCAAGAGCAAGGAAAC+AGG | 0.483729 | 3_1:-9552328 | Msa0347940:intron |
| GGAGATCAAAGTCTCGCGTC+TGG | 0.487266 | 3_1:-9552182 | Msa0347940:CDS |
| CATGGCAGCCGGTGCTCCAT+CGG | 0.496616 | 3_1:-9552514 | Msa0347940:CDS |
| CCAACCGCAATTCCAGCCTC+TGG | 0.504611 | 3_1:-9553084 | Msa0347940:CDS |
| GATGAAGTTCAGAATCACTT+AGG | 0.504785 | 3_1:-9553029 | Msa0347940:CDS |
| TCTGAACTTCATCAAGGGTA+AGG | 0.505070 | 3_1:+9553039 | None:intergenic |
| GTCCTCTCAATCATGTCCTC+CGG | 0.505376 | 3_1:+9552399 | None:intergenic |
| ATCTGCGAGAAAGCGGGGAC+CGG | 0.507079 | 3_1:-9552418 | Msa0347940:CDS |
| CGTCTTCTTGCTTAACGGAC+CGG | 0.507684 | 3_1:+9552854 | None:intergenic |
| TGGCATTTAGGTTCGGGTGG+TGG | 0.513608 | 3_1:+9551153 | None:intergenic |
| TCAGATAAGTTTCCTACCAC+TGG | 0.525861 | 3_1:+9552450 | None:intergenic |
| TTGCCTAACATCGAAACTAT+GGG | 0.527577 | 3_1:-9553140 | Msa0347940:CDS |
| GACTGAGCTATGATCTGGCT+CGG | 0.527606 | 3_1:+9552543 | None:intergenic |
| CTGTTGAGAGGAAGCAGAAG+AGG | 0.527853 | 3_1:-9552377 | Msa0347940:CDS |
| TACAGATGGTCAGGTGGCGT+TGG | 0.529554 | 3_1:-9552478 | Msa0347940:CDS |
| ACAGAAATCTGCGAGAAAGC+GGG | 0.534375 | 3_1:-9552424 | Msa0347940:CDS |
| AACGAGGACACAGCGCAAGC+CGG | 0.540740 | 3_1:-9552915 | Msa0347940:CDS |
| AGTGATTCTGAACTTCATCA+AGG | 0.543380 | 3_1:+9553033 | None:intergenic |
| AACGCCGTCCGATGGAGCAC+CGG | 0.546844 | 3_1:+9552506 | None:intergenic |
| CTGCTGCGCGCTCAAGAGCA+AGG | 0.547968 | 3_1:-9552335 | Msa0347940:CDS |
| CGCAATTCCAGCCTCTGGCG+CGG | 0.552340 | 3_1:-9553079 | Msa0347940:CDS |
| CGTTCCGTATACAGATGGTC+AGG | 0.553919 | 3_1:-9552487 | Msa0347940:CDS |
| TGCTGTGGATGCTGATAGTG+TGG | 0.563676 | 3_1:+9552588 | None:intergenic |
| TTAGGCATACACAACTGAGT+TGG | 0.564109 | 3_1:-9552203 | Msa0347940:intron |
| TGCGAGAAAGCGGGGACCGG+AGG | 0.566566 | 3_1:-9552415 | Msa0347940:CDS |
| GGCAAACCAATCAATTCGCA+TGG | 0.566719 | 3_1:-9552940 | Msa0347940:CDS |
| CACAGAAATCTGCGAGAAAG+CGG | 0.574514 | 3_1:-9552425 | Msa0347940:CDS |
| GTATACGGAACGCCGTCCGA+TGG | 0.577145 | 3_1:+9552498 | None:intergenic |
| CTGATGATACGCGACGAAGC+TGG | 0.577434 | 3_1:+9551133 | None:intergenic |
| TGAAAAGCTGAGGAAAGAGA+AGG | 0.578797 | 3_1:-9552149 | Msa0347940:intron |
| GCAGCCGGTGCTCCATCGGA+CGG | 0.579352 | 3_1:-9552510 | Msa0347940:CDS |
| GCATCCACAGCAAAGTGTGA+TGG | 0.583686 | 3_1:-9552577 | Msa0347940:CDS |
| AGCTGGCATTTAGGTTCGGG+TGG | 0.592805 | 3_1:+9551150 | None:intergenic |
| GCAATGACTGAGCTATGATC+TGG | 0.599628 | 3_1:+9552538 | None:intergenic |
| TACTGTATCCACGGACCATG+TGG | 0.602459 | 3_1:+9552618 | None:intergenic |
| ACAACACTGACTTTAGGAGT+AGG | 0.608724 | 3_1:+9552672 | None:intergenic |
| ATCAATTCGCATGGAAAACG+AGG | 0.609101 | 3_1:-9552931 | Msa0347940:CDS |
| GTGATTCTGAACTTCATCAA+GGG | 0.610620 | 3_1:+9553034 | None:intergenic |
| CATAGCTCAGTCATTGCACA+TGG | 0.615121 | 3_1:-9552532 | Msa0347940:CDS |
| GACCGGAGGACATGATTGAG+AGG | 0.620098 | 3_1:-9552401 | Msa0347940:CDS |
| GCGTTGGCTTCACCAGTGGT+AGG | 0.620523 | 3_1:-9552462 | Msa0347940:CDS |
| GTCGCCATCACACTTTGCTG+TGG | 0.628005 | 3_1:+9552573 | None:intergenic |
| AAGAGGAAAATGAAAAGCTG+AGG | 0.635284 | 3_1:-9552159 | Msa0347940:CDS |
| GGTTGTGCATACTGTATCCA+CGG | 0.641304 | 3_1:+9552609 | None:intergenic |
| TGATTGAGAGGACTGTTGAG+AGG | 0.642725 | 3_1:-9552389 | Msa0347940:CDS |
| GGTGGCGTTGGCTTCACCAG+TGG | 0.643645 | 3_1:-9552466 | Msa0347940:CDS |
| CAGAAATCTGCGAGAAAGCG+GGG | 0.644702 | 3_1:-9552423 | Msa0347940:CDS |
| CCAACAAAACAACGATCATG+AGG | 0.650306 | 3_1:-9552808 | Msa0347940:CDS |
| GACGGCGTTCCGTATACAGA+TGG | 0.652010 | 3_1:-9552492 | Msa0347940:CDS |
| TCCGTATACAGATGGTCAGG+TGG | 0.656234 | 3_1:-9552484 | Msa0347940:CDS |
| CGGTCCGTTAAGCAAGAAGA+CGG | 0.656636 | 3_1:-9552853 | Msa0347940:CDS |
| ACAAAACAACGATCATGAGG+AGG | 0.694318 | 3_1:-9552805 | Msa0347940:CDS |
| TGCCTAACATCGAAACTATG+GGG | 0.703016 | 3_1:-9553139 | Msa0347940:CDS |
| GGACCATGTGGAGAAAACTG+TGG | 0.769588 | 3_1:+9552630 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAACAAAAAGATTTTCAA+TGG | + | chr3_1:9552170-9552189 | None:intergenic | 15.0% |
| !! | ATTTACATTCTTAATTCTTA+TGG | - | chr3_1:9552265-9552284 | Msa0347940:intron | 15.0% |
| !!! | TTATTTTCTCAAATTATTAC+CGG | - | chr3_1:9552691-9552710 | Msa0347940:CDS | 15.0% |
| !! | AATTTCAATATCTAAACATT+TGG | - | chr3_1:9552795-9552814 | Msa0347940:CDS | 15.0% |
| !!! | ATTAACAAAAAGATTTTCAA+TGG | + | chr3_1:9552170-9552189 | None:intergenic | 15.0% |
| !! | ATTTACATTCTTAATTCTTA+TGG | - | chr3_1:9552265-9552284 | Msa0347940:intron | 15.0% |
| !!! | TTATTTTCTCAAATTATTAC+CGG | - | chr3_1:9552691-9552710 | Msa0347940:CDS | 15.0% |
| !! | AATTTCAATATCTAAACATT+TGG | - | chr3_1:9552795-9552814 | Msa0347940:CDS | 15.0% |
| !! | AAATTAGAACTTCAATAACA+TGG | + | chr3_1:9551987-9552006 | None:intergenic | 20.0% |
| !! | TTTGCTTAAAAGTTATAGTT+TGG | - | chr3_1:9552142-9552161 | Msa0347940:intron | 20.0% |
| !! | TACTTAATATCAAGAAACTA+AGG | + | chr3_1:9552206-9552225 | None:intergenic | 20.0% |
| !! | TGAAATATCAGAATAATTCT+AGG | + | chr3_1:9552489-9552508 | None:intergenic | 20.0% |
| !! | TATTCTGATATTTCATGTAT+TGG | - | chr3_1:9552494-9552513 | Msa0347940:CDS | 20.0% |
| !!! | TACTTATTGACTGTTATTAT+TGG | - | chr3_1:9552554-9552573 | Msa0347940:CDS | 20.0% |
| !!! | GAAATTTGAAATCAGTAAAT+TGG | + | chr3_1:9552781-9552800 | None:intergenic | 20.0% |
| !! | TTGATTGTACTATATAAACA+AGG | + | chr3_1:9552838-9552857 | None:intergenic | 20.0% |
| !!! | ATGCTACAAATTCAAATTTT+TGG | - | chr3_1:9552979-9552998 | Msa0347940:CDS | 20.0% |
| !!! | ACAAATTCAAATTTTTGGAA+TGG | - | chr3_1:9552984-9553003 | Msa0347940:CDS | 20.0% |
| !! | AAATTAGAACTTCAATAACA+TGG | + | chr3_1:9551987-9552006 | None:intergenic | 20.0% |
| !! | TTTGCTTAAAAGTTATAGTT+TGG | - | chr3_1:9552142-9552161 | Msa0347940:intron | 20.0% |
| !! | TACTTAATATCAAGAAACTA+AGG | + | chr3_1:9552206-9552225 | None:intergenic | 20.0% |
| !! | TGAAATATCAGAATAATTCT+AGG | + | chr3_1:9552489-9552508 | None:intergenic | 20.0% |
| !! | TATTCTGATATTTCATGTAT+TGG | - | chr3_1:9552494-9552513 | Msa0347940:CDS | 20.0% |
| !!! | TACTTATTGACTGTTATTAT+TGG | - | chr3_1:9552554-9552573 | Msa0347940:CDS | 20.0% |
| !!! | GAAATTTGAAATCAGTAAAT+TGG | + | chr3_1:9552781-9552800 | None:intergenic | 20.0% |
| !! | TTGATTGTACTATATAAACA+AGG | + | chr3_1:9552838-9552857 | None:intergenic | 20.0% |
| !!! | ATGCTACAAATTCAAATTTT+TGG | - | chr3_1:9552979-9552998 | Msa0347940:CDS | 20.0% |
| !!! | ACAAATTCAAATTTTTGGAA+TGG | - | chr3_1:9552984-9553003 | Msa0347940:CDS | 20.0% |
| ! | ATGGAAAAAGTTGTTTACTT+GGG | + | chr3_1:9552024-9552043 | None:intergenic | 25.0% |
| ! | CTAATTACAGTTATAATCCA+TGG | + | chr3_1:9552043-9552062 | None:intergenic | 25.0% |
| !! | CATGGATTATAACTGTAATT+AGG | - | chr3_1:9552041-9552060 | Msa0347940:intron | 25.0% |
| !! | ATCTCAATTTAGTTTCTGTA+CGG | - | chr3_1:9552228-9552247 | Msa0347940:intron | 25.0% |
| ! | TTCTTAATTCTTATGGTGTT+TGG | - | chr3_1:9552272-9552291 | Msa0347940:intron | 25.0% |
| ! | TCTTAATTCTTATGGTGTTT+GGG | - | chr3_1:9552273-9552292 | Msa0347940:intron | 25.0% |
| !! | TTACTGCTTAGAATTTTCTT+TGG | - | chr3_1:9552332-9552351 | Msa0347940:CDS | 25.0% |
| ! | AATGAGTAAAAAGATCATGA+AGG | - | chr3_1:9552528-9552547 | Msa0347940:CDS | 25.0% |
| ! | AATACATATGAAGGATTGAA+AGG | + | chr3_1:9552592-9552611 | None:intergenic | 25.0% |
| ! | GCAACAAGATTAATAAACAA+AGG | + | chr3_1:9552910-9552929 | None:intergenic | 25.0% |
| ! | ATGGAAAAAGTTGTTTACTT+GGG | + | chr3_1:9552024-9552043 | None:intergenic | 25.0% |
| ! | CTAATTACAGTTATAATCCA+TGG | + | chr3_1:9552043-9552062 | None:intergenic | 25.0% |
| !! | CATGGATTATAACTGTAATT+AGG | - | chr3_1:9552041-9552060 | Msa0347940:intron | 25.0% |
| !! | ATCTCAATTTAGTTTCTGTA+CGG | - | chr3_1:9552228-9552247 | Msa0347940:intron | 25.0% |
| ! | TTCTTAATTCTTATGGTGTT+TGG | - | chr3_1:9552272-9552291 | Msa0347940:intron | 25.0% |
| ! | TCTTAATTCTTATGGTGTTT+GGG | - | chr3_1:9552273-9552292 | Msa0347940:intron | 25.0% |
| !! | TTACTGCTTAGAATTTTCTT+TGG | - | chr3_1:9552332-9552351 | Msa0347940:CDS | 25.0% |
| ! | AATGAGTAAAAAGATCATGA+AGG | - | chr3_1:9552528-9552547 | Msa0347940:CDS | 25.0% |
| ! | AATACATATGAAGGATTGAA+AGG | + | chr3_1:9552592-9552611 | None:intergenic | 25.0% |
| ! | GCAACAAGATTAATAAACAA+AGG | + | chr3_1:9552910-9552929 | None:intergenic | 25.0% |
| !!! | GATGACATTAGAGGATTTTT+TGG | - | chr3_1:9551514-9551533 | Msa0347940:intron | 30.0% |
| AGAAGAGGATGATTAAGAAT+CGG | - | chr3_1:9551900-9551919 | Msa0347940:intron | 30.0% | |
| CATGGAAAAAGTTGTTTACT+TGG | + | chr3_1:9552025-9552044 | None:intergenic | 30.0% | |
| !! | CAAGTAAACAACTTTTTCCA+TGG | - | chr3_1:9552023-9552042 | Msa0347940:intron | 30.0% |
| ! | CTGATATTTCATGTATTGGT+TGG | - | chr3_1:9552498-9552517 | Msa0347940:CDS | 30.0% |
| AGTGTCAGAAATACATATGA+AGG | + | chr3_1:9552601-9552620 | None:intergenic | 30.0% | |
| TTTCTGACACTTCAAATTCA+AGG | - | chr3_1:9552610-9552629 | Msa0347940:CDS | 30.0% | |
| TGATATTGACACATAAACAC+CGG | + | chr3_1:9552713-9552732 | None:intergenic | 30.0% | |
| !!! | TTGCATAGTGTTTTTTGAAG+AGG | - | chr3_1:9552926-9552945 | Msa0347940:CDS | 30.0% |
| ! | TTTTGCATTAAGCATTTGGA+TGG | - | chr3_1:9552951-9552970 | Msa0347940:CDS | 30.0% |
| TTGGAATGGATGTATCTTTA+TGG | - | chr3_1:9552998-9553017 | Msa0347940:CDS | 30.0% | |
| !!! | GATGACATTAGAGGATTTTT+TGG | - | chr3_1:9551514-9551533 | Msa0347940:intron | 30.0% |
| AGAAGAGGATGATTAAGAAT+CGG | - | chr3_1:9551900-9551919 | Msa0347940:intron | 30.0% | |
| CATGGAAAAAGTTGTTTACT+TGG | + | chr3_1:9552025-9552044 | None:intergenic | 30.0% | |
| !! | CAAGTAAACAACTTTTTCCA+TGG | - | chr3_1:9552023-9552042 | Msa0347940:intron | 30.0% |
| ! | CTGATATTTCATGTATTGGT+TGG | - | chr3_1:9552498-9552517 | Msa0347940:CDS | 30.0% |
| AGTGTCAGAAATACATATGA+AGG | + | chr3_1:9552601-9552620 | None:intergenic | 30.0% | |
| TTTCTGACACTTCAAATTCA+AGG | - | chr3_1:9552610-9552629 | Msa0347940:CDS | 30.0% | |
| TGATATTGACACATAAACAC+CGG | + | chr3_1:9552713-9552732 | None:intergenic | 30.0% | |
| !!! | TTGCATAGTGTTTTTTGAAG+AGG | - | chr3_1:9552926-9552945 | Msa0347940:CDS | 30.0% |
| ! | TTTTGCATTAAGCATTTGGA+TGG | - | chr3_1:9552951-9552970 | Msa0347940:CDS | 30.0% |
| TTGGAATGGATGTATCTTTA+TGG | - | chr3_1:9552998-9553017 | Msa0347940:CDS | 30.0% | |
| TTGCCTAACATCGAAACTAT+GGG | - | chr3_1:9551122-9551141 | Msa0347940:CDS | 35.0% | |
| GTGATTCTGAACTTCATCAA+GGG | + | chr3_1:9551231-9551250 | None:intergenic | 35.0% | |
| AGTGATTCTGAACTTCATCA+AGG | + | chr3_1:9551232-9551251 | None:intergenic | 35.0% | |
| GATGAAGTTCAGAATCACTT+AGG | - | chr3_1:9551233-9551252 | Msa0347940:intron | 35.0% | |
| TCAAGGTTCATACTACTTAG+TGG | + | chr3_1:9551272-9551291 | None:intergenic | 35.0% | |
| ! | ACGAGCTTCTGAAAAATGTA+TGG | - | chr3_1:9551291-9551310 | Msa0347940:intron | 35.0% |
| ! | GAAAAATGTATGGACTGTTG+AGG | - | chr3_1:9551301-9551320 | Msa0347940:intron | 35.0% |
| ACGTTGAAAAACAACTTGTC+CGG | + | chr3_1:9551369-9551388 | None:intergenic | 35.0% | |
| !!! | GAGGATTTTTTGGTTAAAGC+AGG | - | chr3_1:9551524-9551543 | Msa0347940:intron | 35.0% |
| !! | GATTCAACAACACTGACTTT+AGG | + | chr3_1:9551599-9551618 | None:intergenic | 35.0% |
| GAAGAGGATGATTAAGAATC+GGG | - | chr3_1:9551901-9551920 | Msa0347940:intron | 35.0% | |
| AGTTGTTTACTTGGGAGAAA+CGG | + | chr3_1:9552016-9552035 | None:intergenic | 35.0% | |
| AAGAGGAAAATGAAAAGCTG+AGG | - | chr3_1:9552103-9552122 | Msa0347940:intron | 35.0% | |
| GAAATTGTGCACTTTGATGT+TGG | - | chr3_1:9552295-9552314 | Msa0347940:intron | 35.0% | |
| GTAAAGGGTCACATATTCTA+TGG | + | chr3_1:9552358-9552377 | None:intergenic | 35.0% | |
| AGTAAGCACAAGACAGTAAA+GGG | + | chr3_1:9552373-9552392 | None:intergenic | 35.0% | |
| AAGTAAGCACAAGACAGTAA+AGG | + | chr3_1:9552374-9552393 | None:intergenic | 35.0% | |
| !! | ACTGTCTTGTGCTTACTTTT+AGG | - | chr3_1:9552376-9552395 | Msa0347940:CDS | 35.0% |
| TGTCAATATCATGTCAGTGT+CGG | + | chr3_1:9552648-9552667 | None:intergenic | 35.0% | |
| ! | GGCATTTTGCATTAAGCATT+TGG | - | chr3_1:9552947-9552966 | Msa0347940:CDS | 35.0% |
| ! | GTTTTACATACTCAACTTGC+AGG | - | chr3_1:9553060-9553079 | Msa0347940:CDS | 35.0% |
| TTGCCTAACATCGAAACTAT+GGG | - | chr3_1:9551122-9551141 | Msa0347940:CDS | 35.0% | |
| GTGATTCTGAACTTCATCAA+GGG | + | chr3_1:9551231-9551250 | None:intergenic | 35.0% | |
| AGTGATTCTGAACTTCATCA+AGG | + | chr3_1:9551232-9551251 | None:intergenic | 35.0% | |
| GATGAAGTTCAGAATCACTT+AGG | - | chr3_1:9551233-9551252 | Msa0347940:intron | 35.0% | |
| TCAAGGTTCATACTACTTAG+TGG | + | chr3_1:9551272-9551291 | None:intergenic | 35.0% | |
| ! | ACGAGCTTCTGAAAAATGTA+TGG | - | chr3_1:9551291-9551310 | Msa0347940:intron | 35.0% |
| ! | GAAAAATGTATGGACTGTTG+AGG | - | chr3_1:9551301-9551320 | Msa0347940:intron | 35.0% |
| ACGTTGAAAAACAACTTGTC+CGG | + | chr3_1:9551369-9551388 | None:intergenic | 35.0% | |
| !!! | GAGGATTTTTTGGTTAAAGC+AGG | - | chr3_1:9551524-9551543 | Msa0347940:intron | 35.0% |
| !! | GATTCAACAACACTGACTTT+AGG | + | chr3_1:9551599-9551618 | None:intergenic | 35.0% |
| GAAGAGGATGATTAAGAATC+GGG | - | chr3_1:9551901-9551920 | Msa0347940:intron | 35.0% | |
| AGTTGTTTACTTGGGAGAAA+CGG | + | chr3_1:9552016-9552035 | None:intergenic | 35.0% | |
| AAGAGGAAAATGAAAAGCTG+AGG | - | chr3_1:9552103-9552122 | Msa0347940:intron | 35.0% | |
| GAAATTGTGCACTTTGATGT+TGG | - | chr3_1:9552295-9552314 | Msa0347940:intron | 35.0% | |
| GTAAAGGGTCACATATTCTA+TGG | + | chr3_1:9552358-9552377 | None:intergenic | 35.0% | |
| AGTAAGCACAAGACAGTAAA+GGG | + | chr3_1:9552373-9552392 | None:intergenic | 35.0% | |
| AAGTAAGCACAAGACAGTAA+AGG | + | chr3_1:9552374-9552393 | None:intergenic | 35.0% | |
| !! | ACTGTCTTGTGCTTACTTTT+AGG | - | chr3_1:9552376-9552395 | Msa0347940:CDS | 35.0% |
| TGTCAATATCATGTCAGTGT+CGG | + | chr3_1:9552648-9552667 | None:intergenic | 35.0% | |
| ! | GGCATTTTGCATTAAGCATT+TGG | - | chr3_1:9552947-9552966 | Msa0347940:CDS | 35.0% |
| ! | GTTTTACATACTCAACTTGC+AGG | - | chr3_1:9553060-9553079 | Msa0347940:CDS | 35.0% |
| TGCCTAACATCGAAACTATG+GGG | - | chr3_1:9551123-9551142 | Msa0347940:CDS | 40.0% | |
| TCTGAACTTCATCAAGGGTA+AGG | + | chr3_1:9551226-9551245 | None:intergenic | 40.0% | |
| CAGAATCACTTAGGTGACTT+AGG | - | chr3_1:9551242-9551261 | Msa0347940:intron | 40.0% | |
| !! | CATTTTTCAGAAGCTCGTCA+AGG | + | chr3_1:9551289-9551308 | None:intergenic | 40.0% |
| ! | CGTTTTCCATGCGAATTGAT+TGG | + | chr3_1:9551331-9551350 | None:intergenic | 40.0% |
| ATCAATTCGCATGGAAAACG+AGG | - | chr3_1:9551331-9551350 | Msa0347940:intron | 40.0% | |
| CAACCTAATCTGTCGTTAAC+CGG | - | chr3_1:9551389-9551408 | Msa0347940:intron | 40.0% | |
| TCAACCGTCTTCTTGCTTAA+CGG | + | chr3_1:9551416-9551435 | None:intergenic | 40.0% | |
| !! | AGAAGACGGTTGATGAAGTT+TGG | - | chr3_1:9551423-9551442 | Msa0347940:intron | 40.0% |
| !! | CCTCATGATCGTTGTTTTGT+TGG | + | chr3_1:9551457-9551476 | None:intergenic | 40.0% |
| CCAACAAAACAACGATCATG+AGG | - | chr3_1:9551454-9551473 | Msa0347940:intron | 40.0% | |
| ACAAAACAACGATCATGAGG+AGG | - | chr3_1:9551457-9551476 | Msa0347940:intron | 40.0% | |
| TCAAGAGATGCAGTCTACTT+TGG | - | chr3_1:9551487-9551506 | Msa0347940:intron | 40.0% | |
| CAAGAGATGCAGTCTACTTT+GGG | - | chr3_1:9551488-9551507 | Msa0347940:intron | 40.0% | |
| TTTGGGTGAGATGACATTAG+AGG | - | chr3_1:9551505-9551524 | Msa0347940:intron | 40.0% | |
| !! | ACAACACTGACTTTAGGAGT+AGG | + | chr3_1:9551593-9551612 | None:intergenic | 40.0% |
| TCAGATAAGTTTCCTACCAC+TGG | + | chr3_1:9551815-9551834 | None:intergenic | 40.0% | |
| GTTGTTTACTTGGGAGAAAC+GGG | + | chr3_1:9552015-9552034 | None:intergenic | 40.0% | |
| TTAGGCATACACAACTGAGT+TGG | - | chr3_1:9552059-9552078 | Msa0347940:intron | 40.0% | |
| TGAAAAGCTGAGGAAAGAGA+AGG | - | chr3_1:9552113-9552132 | Msa0347940:intron | 40.0% | |
| CTTCAAATTCAAGGCGTGTT+TGG | - | chr3_1:9552619-9552638 | Msa0347940:CDS | 40.0% | |
| TGTCTCTGTCAACACTTCAT+AGG | - | chr3_1:9552739-9552758 | Msa0347940:CDS | 40.0% | |
| TGCCTAACATCGAAACTATG+GGG | - | chr3_1:9551123-9551142 | Msa0347940:CDS | 40.0% | |
| TCTGAACTTCATCAAGGGTA+AGG | + | chr3_1:9551226-9551245 | None:intergenic | 40.0% | |
| CAGAATCACTTAGGTGACTT+AGG | - | chr3_1:9551242-9551261 | Msa0347940:intron | 40.0% | |
| !! | CATTTTTCAGAAGCTCGTCA+AGG | + | chr3_1:9551289-9551308 | None:intergenic | 40.0% |
| ! | CGTTTTCCATGCGAATTGAT+TGG | + | chr3_1:9551331-9551350 | None:intergenic | 40.0% |
| ATCAATTCGCATGGAAAACG+AGG | - | chr3_1:9551331-9551350 | Msa0347940:intron | 40.0% | |
| CAACCTAATCTGTCGTTAAC+CGG | - | chr3_1:9551389-9551408 | Msa0347940:intron | 40.0% | |
| TCAACCGTCTTCTTGCTTAA+CGG | + | chr3_1:9551416-9551435 | None:intergenic | 40.0% | |
| !! | AGAAGACGGTTGATGAAGTT+TGG | - | chr3_1:9551423-9551442 | Msa0347940:intron | 40.0% |
| !! | CCTCATGATCGTTGTTTTGT+TGG | + | chr3_1:9551457-9551476 | None:intergenic | 40.0% |
| CCAACAAAACAACGATCATG+AGG | - | chr3_1:9551454-9551473 | Msa0347940:intron | 40.0% | |
| ACAAAACAACGATCATGAGG+AGG | - | chr3_1:9551457-9551476 | Msa0347940:intron | 40.0% | |
| TCAAGAGATGCAGTCTACTT+TGG | - | chr3_1:9551487-9551506 | Msa0347940:intron | 40.0% | |
| CAAGAGATGCAGTCTACTTT+GGG | - | chr3_1:9551488-9551507 | Msa0347940:intron | 40.0% | |
| TTTGGGTGAGATGACATTAG+AGG | - | chr3_1:9551505-9551524 | Msa0347940:intron | 40.0% | |
| !! | ACAACACTGACTTTAGGAGT+AGG | + | chr3_1:9551593-9551612 | None:intergenic | 40.0% |
| TCAGATAAGTTTCCTACCAC+TGG | + | chr3_1:9551815-9551834 | None:intergenic | 40.0% | |
| GTTGTTTACTTGGGAGAAAC+GGG | + | chr3_1:9552015-9552034 | None:intergenic | 40.0% | |
| TTAGGCATACACAACTGAGT+TGG | - | chr3_1:9552059-9552078 | Msa0347940:intron | 40.0% | |
| TGAAAAGCTGAGGAAAGAGA+AGG | - | chr3_1:9552113-9552132 | Msa0347940:intron | 40.0% | |
| CTTCAAATTCAAGGCGTGTT+TGG | - | chr3_1:9552619-9552638 | Msa0347940:CDS | 40.0% | |
| TGTCTCTGTCAACACTTCAT+AGG | - | chr3_1:9552739-9552758 | Msa0347940:CDS | 40.0% | |
| GACCCCATAGTTTCGATGTT+AGG | + | chr3_1:9551128-9551147 | None:intergenic | 45.0% | |
| GGCAAACCAATCAATTCGCA+TGG | - | chr3_1:9551322-9551341 | Msa0347940:intron | 45.0% | |
| ! | GGTTAAAGCAGGCGTTGTTT+CGG | - | chr3_1:9551535-9551554 | Msa0347940:intron | 45.0% |
| ! | TTGCCACAGTTTTCTCCACA+TGG | - | chr3_1:9551629-9551648 | Msa0347940:intron | 45.0% |
| GGTTGTGCATACTGTATCCA+CGG | + | chr3_1:9551656-9551675 | None:intergenic | 45.0% | |
| GCAATGACTGAGCTATGATC+TGG | + | chr3_1:9551727-9551746 | None:intergenic | 45.0% | |
| CATAGCTCAGTCATTGCACA+TGG | - | chr3_1:9551730-9551749 | Msa0347940:intron | 45.0% | |
| CACAGAAATCTGCGAGAAAG+CGG | - | chr3_1:9551837-9551856 | Msa0347940:intron | 45.0% | |
| ACAGAAATCTGCGAGAAAGC+GGG | - | chr3_1:9551838-9551857 | Msa0347940:intron | 45.0% | |
| TGATTGAGAGGACTGTTGAG+AGG | - | chr3_1:9551873-9551892 | Msa0347940:intron | 45.0% | |
| !! | TGAAGTGTTGACAGAGACAC+AGG | + | chr3_1:9552738-9552757 | None:intergenic | 45.0% |
| ! | ACGAAGCTGGCATTTAGGTT+CGG | + | chr3_1:9553119-9553138 | None:intergenic | 45.0% |
| GACCCCATAGTTTCGATGTT+AGG | + | chr3_1:9551128-9551147 | None:intergenic | 45.0% | |
| GGCAAACCAATCAATTCGCA+TGG | - | chr3_1:9551322-9551341 | Msa0347940:intron | 45.0% | |
| ! | GGTTAAAGCAGGCGTTGTTT+CGG | - | chr3_1:9551535-9551554 | Msa0347940:intron | 45.0% |
| ! | TTGCCACAGTTTTCTCCACA+TGG | - | chr3_1:9551629-9551648 | Msa0347940:intron | 45.0% |
| GGTTGTGCATACTGTATCCA+CGG | + | chr3_1:9551656-9551675 | None:intergenic | 45.0% | |
| GCAATGACTGAGCTATGATC+TGG | + | chr3_1:9551727-9551746 | None:intergenic | 45.0% | |
| CATAGCTCAGTCATTGCACA+TGG | - | chr3_1:9551730-9551749 | Msa0347940:intron | 45.0% | |
| CACAGAAATCTGCGAGAAAG+CGG | - | chr3_1:9551837-9551856 | Msa0347940:intron | 45.0% | |
| ACAGAAATCTGCGAGAAAGC+GGG | - | chr3_1:9551838-9551857 | Msa0347940:intron | 45.0% | |
| TGATTGAGAGGACTGTTGAG+AGG | - | chr3_1:9551873-9551892 | Msa0347940:intron | 45.0% | |
| !! | TGAAGTGTTGACAGAGACAC+AGG | + | chr3_1:9552738-9552757 | None:intergenic | 45.0% |
| ! | ACGAAGCTGGCATTTAGGTT+CGG | + | chr3_1:9553119-9553138 | None:intergenic | 45.0% |
| ! | ATTGAATTTTGCCGCGCCAG+AGG | + | chr3_1:9551197-9551216 | None:intergenic | 50.0% |
| GGACCGGTTAACGACAGATT+AGG | + | chr3_1:9551395-9551414 | None:intergenic | 50.0% | |
| ! | CGTCTTCTTGCTTAACGGAC+CGG | + | chr3_1:9551411-9551430 | None:intergenic | 50.0% |
| CGGTCCGTTAAGCAAGAAGA+CGG | - | chr3_1:9551409-9551428 | Msa0347940:intron | 50.0% | |
| GGACCATGTGGAGAAAACTG+TGG | + | chr3_1:9551635-9551654 | None:intergenic | 50.0% | |
| ! | AGTTTTCTCCACATGGTCCG+TGG | - | chr3_1:9551636-9551655 | Msa0347940:intron | 50.0% |
| TACTGTATCCACGGACCATG+TGG | + | chr3_1:9551647-9551666 | None:intergenic | 50.0% | |
| ! | TGCTGTGGATGCTGATAGTG+TGG | + | chr3_1:9551677-9551696 | None:intergenic | 50.0% |
| GCATCCACAGCAAAGTGTGA+TGG | - | chr3_1:9551685-9551704 | Msa0347940:intron | 50.0% | |
| GACTGAGCTATGATCTGGCT+CGG | + | chr3_1:9551722-9551741 | None:intergenic | 50.0% | |
| CGTTCCGTATACAGATGGTC+AGG | - | chr3_1:9551775-9551794 | Msa0347940:intron | 50.0% | |
| TCCGTATACAGATGGTCAGG+TGG | - | chr3_1:9551778-9551797 | Msa0347940:intron | 50.0% | |
| GCCACCTGACCATCTGTATA+CGG | + | chr3_1:9551782-9551801 | None:intergenic | 50.0% | |
| CAGAAATCTGCGAGAAAGCG+GGG | - | chr3_1:9551839-9551858 | Msa0347940:intron | 50.0% | |
| GTCCTCTCAATCATGTCCTC+CGG | + | chr3_1:9551866-9551885 | None:intergenic | 50.0% | |
| CTGTTGAGAGGAAGCAGAAG+AGG | - | chr3_1:9551885-9551904 | Msa0347940:intron | 50.0% | |
| ! | CGAAGCTGGCATTTAGGTTC+GGG | + | chr3_1:9553118-9553137 | None:intergenic | 50.0% |
| ! | ATTGAATTTTGCCGCGCCAG+AGG | + | chr3_1:9551197-9551216 | None:intergenic | 50.0% |
| GGACCGGTTAACGACAGATT+AGG | + | chr3_1:9551395-9551414 | None:intergenic | 50.0% | |
| ! | CGTCTTCTTGCTTAACGGAC+CGG | + | chr3_1:9551411-9551430 | None:intergenic | 50.0% |
| CGGTCCGTTAAGCAAGAAGA+CGG | - | chr3_1:9551409-9551428 | Msa0347940:intron | 50.0% | |
| GGACCATGTGGAGAAAACTG+TGG | + | chr3_1:9551635-9551654 | None:intergenic | 50.0% | |
| ! | AGTTTTCTCCACATGGTCCG+TGG | - | chr3_1:9551636-9551655 | Msa0347940:intron | 50.0% |
| TACTGTATCCACGGACCATG+TGG | + | chr3_1:9551647-9551666 | None:intergenic | 50.0% | |
| ! | TGCTGTGGATGCTGATAGTG+TGG | + | chr3_1:9551677-9551696 | None:intergenic | 50.0% |
| GCATCCACAGCAAAGTGTGA+TGG | - | chr3_1:9551685-9551704 | Msa0347940:intron | 50.0% | |
| GACTGAGCTATGATCTGGCT+CGG | + | chr3_1:9551722-9551741 | None:intergenic | 50.0% | |
| CGTTCCGTATACAGATGGTC+AGG | - | chr3_1:9551775-9551794 | Msa0347940:intron | 50.0% | |
| TCCGTATACAGATGGTCAGG+TGG | - | chr3_1:9551778-9551797 | Msa0347940:intron | 50.0% | |
| GCCACCTGACCATCTGTATA+CGG | + | chr3_1:9551782-9551801 | None:intergenic | 50.0% | |
| CAGAAATCTGCGAGAAAGCG+GGG | - | chr3_1:9551839-9551858 | Msa0347940:intron | 50.0% | |
| GTCCTCTCAATCATGTCCTC+CGG | + | chr3_1:9551866-9551885 | None:intergenic | 50.0% | |
| CTGTTGAGAGGAAGCAGAAG+AGG | - | chr3_1:9551885-9551904 | Msa0347940:intron | 50.0% | |
| ! | CGAAGCTGGCATTTAGGTTC+GGG | + | chr3_1:9553118-9553137 | None:intergenic | 50.0% |
| GTCGCCATCACACTTTGCTG+TGG | + | chr3_1:9551692-9551711 | None:intergenic | 55.0% | |
| CAGTCATTGCACATGGCAGC+CGG | - | chr3_1:9551737-9551756 | Msa0347940:intron | 55.0% | |
| GACGGCGTTCCGTATACAGA+TGG | - | chr3_1:9551770-9551789 | Msa0347940:intron | 55.0% | |
| TACAGATGGTCAGGTGGCGT+TGG | - | chr3_1:9551784-9551803 | Msa0347940:intron | 55.0% | |
| GACCGGAGGACATGATTGAG+AGG | - | chr3_1:9551861-9551880 | Msa0347940:intron | 55.0% | |
| GCGCTCAAGAGCAAGGAAAC+AGG | - | chr3_1:9551934-9551953 | Msa0347940:intron | 55.0% | |
| GGAGATCAAAGTCTCGCGTC+TGG | - | chr3_1:9552080-9552099 | Msa0347940:intron | 55.0% | |
| CAAAGTCTCGCGTCTGGAAG+AGG | - | chr3_1:9552086-9552105 | Msa0347940:intron | 55.0% | |
| ! | TGGCATTTAGGTTCGGGTGG+TGG | + | chr3_1:9553112-9553131 | None:intergenic | 55.0% |
| ! | AGCTGGCATTTAGGTTCGGG+TGG | + | chr3_1:9553115-9553134 | None:intergenic | 55.0% |
| ACGCGACGAAGCTGGCATTT+AGG | + | chr3_1:9553124-9553143 | None:intergenic | 55.0% | |
| CTGATGATACGCGACGAAGC+TGG | + | chr3_1:9553132-9553151 | None:intergenic | 55.0% | |
| GTCGCCATCACACTTTGCTG+TGG | + | chr3_1:9551692-9551711 | None:intergenic | 55.0% | |
| CAGTCATTGCACATGGCAGC+CGG | - | chr3_1:9551737-9551756 | Msa0347940:intron | 55.0% | |
| GACGGCGTTCCGTATACAGA+TGG | - | chr3_1:9551770-9551789 | Msa0347940:intron | 55.0% | |
| TACAGATGGTCAGGTGGCGT+TGG | - | chr3_1:9551784-9551803 | Msa0347940:intron | 55.0% | |
| GACCGGAGGACATGATTGAG+AGG | - | chr3_1:9551861-9551880 | Msa0347940:intron | 55.0% | |
| GCGCTCAAGAGCAAGGAAAC+AGG | - | chr3_1:9551934-9551953 | Msa0347940:intron | 55.0% | |
| GGAGATCAAAGTCTCGCGTC+TGG | - | chr3_1:9552080-9552099 | Msa0347940:intron | 55.0% | |
| CAAAGTCTCGCGTCTGGAAG+AGG | - | chr3_1:9552086-9552105 | Msa0347940:intron | 55.0% | |
| ! | TGGCATTTAGGTTCGGGTGG+TGG | + | chr3_1:9553112-9553131 | None:intergenic | 55.0% |
| ! | AGCTGGCATTTAGGTTCGGG+TGG | + | chr3_1:9553115-9553134 | None:intergenic | 55.0% |
| ACGCGACGAAGCTGGCATTT+AGG | + | chr3_1:9553124-9553143 | None:intergenic | 55.0% | |
| CTGATGATACGCGACGAAGC+TGG | + | chr3_1:9553132-9553151 | None:intergenic | 55.0% | |
| CCAGAGGCTGGAATTGCGGT+TGG | + | chr3_1:9551181-9551200 | None:intergenic | 60.0% | |
| CCAACCGCAATTCCAGCCTC+TGG | - | chr3_1:9551178-9551197 | Msa0347940:CDS | 60.0% | |
| ! | AATTTTGCCGCGCCAGAGGC+TGG | + | chr3_1:9551193-9551212 | None:intergenic | 60.0% |
| AACGAGGACACAGCGCAAGC+CGG | - | chr3_1:9551347-9551366 | Msa0347940:intron | 60.0% | |
| GTATACGGAACGCCGTCCGA+TGG | + | chr3_1:9551767-9551786 | None:intergenic | 60.0% | |
| !! | GCGTTGGCTTCACCAGTGGT+AGG | - | chr3_1:9551800-9551819 | Msa0347940:intron | 60.0% |
| ATCTGCGAGAAAGCGGGGAC+CGG | - | chr3_1:9551844-9551863 | Msa0347940:intron | 60.0% | |
| CCAGAGGCTGGAATTGCGGT+TGG | + | chr3_1:9551181-9551200 | None:intergenic | 60.0% | |
| CCAACCGCAATTCCAGCCTC+TGG | - | chr3_1:9551178-9551197 | Msa0347940:CDS | 60.0% | |
| ! | AATTTTGCCGCGCCAGAGGC+TGG | + | chr3_1:9551193-9551212 | None:intergenic | 60.0% |
| AACGAGGACACAGCGCAAGC+CGG | - | chr3_1:9551347-9551366 | Msa0347940:intron | 60.0% | |
| GTATACGGAACGCCGTCCGA+TGG | + | chr3_1:9551767-9551786 | None:intergenic | 60.0% | |
| !! | GCGTTGGCTTCACCAGTGGT+AGG | - | chr3_1:9551800-9551819 | Msa0347940:intron | 60.0% |
| ATCTGCGAGAAAGCGGGGAC+CGG | - | chr3_1:9551844-9551863 | Msa0347940:intron | 60.0% | |
| CGCGCCAGAGGCTGGAATTG+CGG | + | chr3_1:9551185-9551204 | None:intergenic | 65.0% | |
| CGCAATTCCAGCCTCTGGCG+CGG | - | chr3_1:9551183-9551202 | Msa0347940:CDS | 65.0% | |
| CATGGCAGCCGGTGCTCCAT+CGG | - | chr3_1:9551748-9551767 | Msa0347940:intron | 65.0% | |
| AACGCCGTCCGATGGAGCAC+CGG | + | chr3_1:9551759-9551778 | None:intergenic | 65.0% | |
| !! | GGTGGCGTTGGCTTCACCAG+TGG | - | chr3_1:9551796-9551815 | Msa0347940:intron | 65.0% |
| CTGCTGCGCGCTCAAGAGCA+AGG | - | chr3_1:9551927-9551946 | Msa0347940:intron | 65.0% | |
| CGCGCCAGAGGCTGGAATTG+CGG | + | chr3_1:9551185-9551204 | None:intergenic | 65.0% | |
| CGCAATTCCAGCCTCTGGCG+CGG | - | chr3_1:9551183-9551202 | Msa0347940:CDS | 65.0% | |
| CATGGCAGCCGGTGCTCCAT+CGG | - | chr3_1:9551748-9551767 | Msa0347940:intron | 65.0% | |
| AACGCCGTCCGATGGAGCAC+CGG | + | chr3_1:9551759-9551778 | None:intergenic | 65.0% | |
| !! | GGTGGCGTTGGCTTCACCAG+TGG | - | chr3_1:9551796-9551815 | Msa0347940:intron | 65.0% |
| CTGCTGCGCGCTCAAGAGCA+AGG | - | chr3_1:9551927-9551946 | Msa0347940:intron | 65.0% | |
| GCAGCCGGTGCTCCATCGGA+CGG | - | chr3_1:9551752-9551771 | Msa0347940:intron | 70.0% | |
| TGCGAGAAAGCGGGGACCGG+AGG | - | chr3_1:9551847-9551866 | Msa0347940:intron | 70.0% | |
| GCAGCCGGTGCTCCATCGGA+CGG | - | chr3_1:9551752-9551771 | Msa0347940:intron | 70.0% | |
| TGCGAGAAAGCGGGGACCGG+AGG | - | chr3_1:9551847-9551866 | Msa0347940:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 9551122 | 9553162 | 9551122 | ID=Msa0347940;Name=Msa0347940 |
| chr3_1 | mRNA | 9551122 | 9553162 | 9551122 | ID=Msa0347940-mRNA-1;Parent=Msa0347940;Name=Msa0347940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|328 |
| chr3_1 | exon | 9552329 | 9553162 | 9552329 | ID=Msa0347940-mRNA-1:exon:2719;Parent=Msa0347940-mRNA-1 |
| chr3_1 | exon | 9552150 | 9552221 | 9552150 | ID=Msa0347940-mRNA-1:exon:2718;Parent=Msa0347940-mRNA-1 |
| chr3_1 | exon | 9551122 | 9551202 | 9551122 | ID=Msa0347940-mRNA-1:exon:2717;Parent=Msa0347940-mRNA-1 |
| chr3_1 | CDS | 9552329 | 9553162 | 9552329 | ID=Msa0347940-mRNA-1:cds;Parent=Msa0347940-mRNA-1 |
| chr3_1 | CDS | 9552150 | 9552221 | 9552150 | ID=Msa0347940-mRNA-1:cds;Parent=Msa0347940-mRNA-1 |
| chr3_1 | CDS | 9551122 | 9551202 | 9551122 | ID=Msa0347940-mRNA-1:cds;Parent=Msa0347940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
