Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347980 | XP_003598354.1 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347980 | sp|Q9LES3|AI5L2_ARATH | 52.396 | 313 | 120 | 8 | 14 | 322 | 10 | 297 | 1.96e-87 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347980 | G7IVG7 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0347980 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0347940 | Msa0347980 | 0.814854 | 1.246358e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347980 | MtrunA17_Chr3g0080341 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0.0 | 647 |
| Msa0347980 | MtrunA17_Chr8g0355121 | 65.260 | 308 | 92 | 4 | 16 | 322 | 20 | 313 | 5.17e-138 | 393 |
| Msa0347980 | MtrunA17_Chr7g0254991 | 49.530 | 319 | 127 | 9 | 20 | 320 | 16 | 318 | 7.70e-84 | 256 |
| Msa0347980 | MtrunA17_Chr6g0460301 | 50.621 | 322 | 126 | 9 | 19 | 322 | 15 | 321 | 2.85e-80 | 246 |
| Msa0347980 | MtrunA17_Chr4g0044771 | 36.176 | 340 | 154 | 13 | 20 | 301 | 18 | 352 | 1.80e-42 | 150 |
| Msa0347980 | MtrunA17_Chr5g0440841 | 46.067 | 178 | 76 | 6 | 1 | 170 | 1 | 166 | 1.14e-34 | 127 |
| Msa0347980 | MtrunA17_Chr5g0440841 | 57.955 | 88 | 37 | 0 | 235 | 322 | 182 | 269 | 5.32e-23 | 96.3 |
| Msa0347980 | MtrunA17_Chr2g0321411 | 33.968 | 315 | 139 | 10 | 23 | 320 | 11 | 273 | 1.05e-33 | 125 |
| Msa0347980 | MtrunA17_Chr2g0321381 | 36.271 | 295 | 152 | 10 | 12 | 294 | 14 | 284 | 4.34e-28 | 110 |
| Msa0347980 | MtrunA17_Chr3g0133971 | 48.361 | 122 | 56 | 2 | 19 | 138 | 26 | 142 | 7.28e-27 | 109 |
| Msa0347980 | MtrunA17_Chr3g0133971 | 42.202 | 109 | 60 | 1 | 189 | 297 | 293 | 398 | 1.26e-17 | 83.2 |
| Msa0347980 | MtrunA17_Chr7g0266211 | 43.182 | 132 | 56 | 3 | 26 | 138 | 45 | 176 | 1.81e-20 | 91.3 |
| Msa0347980 | MtrunA17_Chr5g0424871 | 29.054 | 296 | 167 | 8 | 16 | 273 | 8 | 298 | 9.12e-20 | 87.8 |
| Msa0347980 | MtrunA17_Chr4g0051101 | 42.718 | 103 | 53 | 2 | 196 | 296 | 77 | 175 | 7.88e-14 | 69.3 |
| Msa0347980 | MtrunA17_Chr1g0201751 | 62.745 | 51 | 19 | 0 | 246 | 296 | 157 | 207 | 3.51e-12 | 65.5 |
| Msa0347980 | MtrunA17_Chr5g0405951 | 57.627 | 59 | 13 | 1 | 251 | 297 | 166 | 224 | 9.23e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347980 | AT3G56850.1 | 52.396 | 313 | 120 | 8 | 14 | 322 | 10 | 297 | 2.00e-88 | 267 |
| Msa0347980 | AT2G41070.3 | 48.418 | 316 | 101 | 10 | 10 | 322 | 6 | 262 | 4.55e-75 | 231 |
| Msa0347980 | AT2G41070.1 | 48.418 | 316 | 101 | 10 | 10 | 322 | 6 | 262 | 4.55e-75 | 231 |
| Msa0347980 | AT2G41070.2 | 48.418 | 316 | 101 | 10 | 10 | 322 | 6 | 262 | 4.55e-75 | 231 |
| Msa0347980 | AT2G41070.4 | 48.418 | 316 | 101 | 10 | 10 | 322 | 15 | 271 | 4.71e-75 | 232 |
| Msa0347980 | AT2G41070.5 | 47.931 | 290 | 89 | 10 | 10 | 296 | 6 | 236 | 3.45e-64 | 203 |
| Msa0347980 | AT1G49720.2 | 34.320 | 338 | 162 | 7 | 18 | 296 | 21 | 357 | 3.77e-45 | 159 |
| Msa0347980 | AT1G49720.1 | 34.320 | 338 | 162 | 7 | 18 | 296 | 21 | 357 | 4.02e-45 | 158 |
| Msa0347980 | AT1G49720.3 | 34.320 | 338 | 162 | 7 | 18 | 296 | 21 | 357 | 4.02e-45 | 158 |
| Msa0347980 | AT2G36270.1 | 32.346 | 405 | 169 | 13 | 12 | 315 | 30 | 430 | 4.41e-37 | 138 |
| Msa0347980 | AT2G36270.2 | 32.346 | 405 | 169 | 13 | 12 | 315 | 30 | 430 | 4.41e-37 | 138 |
| Msa0347980 | AT2G36270.3 | 32.976 | 373 | 155 | 12 | 12 | 293 | 30 | 398 | 2.53e-35 | 133 |
| Msa0347980 | AT3G44460.1 | 37.705 | 305 | 131 | 13 | 14 | 294 | 22 | 291 | 1.82e-29 | 115 |
| Msa0347980 | AT3G19290.2 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 3.01e-25 | 105 |
| Msa0347980 | AT3G19290.4 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 3.26e-25 | 105 |
| Msa0347980 | AT3G19290.4 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 6.27e-14 | 72.4 |
| Msa0347980 | AT3G19290.1 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 4.19e-25 | 105 |
| Msa0347980 | AT3G19290.1 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 7.75e-14 | 72.4 |
| Msa0347980 | AT3G19290.5 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 4.19e-25 | 105 |
| Msa0347980 | AT3G19290.5 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 7.75e-14 | 72.4 |
| Msa0347980 | AT3G19290.3 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 4.31e-25 | 105 |
| Msa0347980 | AT3G19290.3 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 7.35e-14 | 72.4 |
| Msa0347980 | AT5G42910.1 | 28.533 | 368 | 175 | 13 | 20 | 319 | 20 | 367 | 2.10e-23 | 99.4 |
| Msa0347980 | AT4G34000.3 | 34.715 | 193 | 77 | 6 | 19 | 171 | 26 | 209 | 8.30e-22 | 95.9 |
| Msa0347980 | AT4G34000.3 | 60.000 | 60 | 24 | 0 | 237 | 296 | 359 | 418 | 1.82e-15 | 77.0 |
| Msa0347980 | AT4G34000.1 | 34.197 | 193 | 78 | 5 | 19 | 171 | 26 | 209 | 1.08e-21 | 95.5 |
| Msa0347980 | AT4G34000.1 | 60.000 | 65 | 25 | 1 | 237 | 301 | 359 | 422 | 2.39e-15 | 77.0 |
| Msa0347980 | AT4G34000.4 | 34.197 | 193 | 78 | 5 | 19 | 171 | 26 | 209 | 1.08e-21 | 95.5 |
| Msa0347980 | AT4G34000.4 | 60.000 | 65 | 25 | 1 | 237 | 301 | 359 | 422 | 2.39e-15 | 77.0 |
| Msa0347980 | AT4G34000.2 | 34.197 | 193 | 78 | 5 | 19 | 171 | 26 | 209 | 1.08e-21 | 95.5 |
| Msa0347980 | AT4G34000.2 | 60.000 | 65 | 25 | 1 | 237 | 301 | 359 | 422 | 2.39e-15 | 77.0 |
| Msa0347980 | AT1G45249.10 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 2.26e-21 | 94.0 |
| Msa0347980 | AT1G45249.5 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 2.26e-21 | 94.0 |
| Msa0347980 | AT1G45249.4 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.93e-21 | 93.6 |
| Msa0347980 | AT1G45249.8 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.93e-21 | 93.6 |
| Msa0347980 | AT1G45249.2 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.93e-21 | 93.6 |
| Msa0347980 | AT1G45249.9 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.93e-21 | 93.6 |
| Msa0347980 | AT1G45249.1 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 4.09e-21 | 93.6 |
| Msa0347980 | AT1G45249.1 | 39.860 | 143 | 61 | 5 | 195 | 320 | 280 | 414 | 9.88e-18 | 83.6 |
| Msa0347980 | AT1G45249.7 | 41.791 | 134 | 60 | 3 | 20 | 138 | 36 | 166 | 4.28e-21 | 93.6 |
| Msa0347980 | AT1G45249.7 | 39.860 | 143 | 61 | 5 | 195 | 320 | 295 | 429 | 1.38e-17 | 83.6 |
| Msa0347980 | AT1G45249.6 | 41.791 | 134 | 60 | 3 | 20 | 138 | 36 | 166 | 4.28e-21 | 93.6 |
| Msa0347980 | AT1G45249.6 | 39.860 | 143 | 61 | 5 | 195 | 320 | 295 | 429 | 1.38e-17 | 83.6 |
| Msa0347980 | AT1G45249.3 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 5.30e-21 | 93.2 |
| Msa0347980 | AT1G45249.3 | 37.013 | 154 | 61 | 6 | 195 | 320 | 280 | 425 | 6.98e-15 | 75.5 |
| Msa0347980 | AT4G35900.1 | 51.163 | 86 | 40 | 2 | 237 | 322 | 202 | 285 | 2.08e-16 | 78.6 |
| Msa0347980 | AT2G17770.2 | 48.837 | 86 | 42 | 2 | 237 | 322 | 112 | 195 | 2.36e-14 | 70.9 |
| Msa0347980 | AT5G44080.1 | 32.353 | 204 | 91 | 8 | 96 | 297 | 120 | 278 | 2.72e-14 | 72.8 |
| Msa0347980 | AT1G03970.1 | 31.373 | 204 | 84 | 6 | 96 | 297 | 85 | 234 | 3.38e-14 | 72.0 |
Find 72 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCGACGAAGCTGGCATTT+AGG | 0.252772 | 3_1:+9736894 | None:intergenic |
| AGAAGACGGTTGATGAAGTT+TGG | 0.321664 | 3_1:-9738594 | Msa0347980:CDS |
| GATTCAACAACACTGACTTT+AGG | 0.341594 | 3_1:+9738421 | None:intergenic |
| TTTGGGTGAGATGACATTAG+AGG | 0.364587 | 3_1:-9738512 | Msa0347980:CDS |
| TCAACCGTCTTCTTGCTTAA+CGG | 0.378968 | 3_1:+9738604 | None:intergenic |
| ACGAAGCTGGCATTTAGGTT+CGG | 0.387515 | 3_1:+9736899 | None:intergenic |
| TCAAGAGATGCAGTCTACTT+TGG | 0.394291 | 3_1:-9738530 | Msa0347980:CDS |
| GCCACCTGACCATCTGTATA+CGG | 0.395127 | 3_1:+9738238 | None:intergenic |
| CGAAGCTGGCATTTAGGTTC+GGG | 0.399153 | 3_1:+9736900 | None:intergenic |
| GGTTAAAGCAGGCGTTGTTT+CGG | 0.403853 | 3_1:-9738482 | Msa0347980:CDS |
| CAACCTAATCTGTCGTTAAC+CGG | 0.406252 | 3_1:-9738628 | Msa0347980:CDS |
| CAAGAGATGCAGTCTACTTT+GGG | 0.419918 | 3_1:-9738529 | Msa0347980:CDS |
| CAGAATCACTTAGGTGACTT+AGG | 0.427650 | 3_1:-9738775 | Msa0347980:CDS |
| AGAAGAGGATGATTAAGAAT+CGG | 0.435534 | 3_1:-9738117 | Msa0347980:CDS |
| TCAAGGTTCATACTACTTAG+TGG | 0.444599 | 3_1:+9738748 | None:intergenic |
| CAAGAGGCTGGAATTGCGGT+TGG | 0.449617 | 3_1:+9738839 | None:intergenic |
| GAAGAGGATGATTAAGAATC+GGG | 0.454965 | 3_1:-9738116 | Msa0347980:CDS |
| GGAGATCAAAGTTTCGCGTC+TGG | 0.466252 | 3_1:-9737937 | Msa0347980:CDS |
| CAGTCATTGCACATGGCAGC+CGG | 0.472274 | 3_1:-9738280 | Msa0347980:CDS |
| CAAAGTTTCGCGTCTGGAAG+AGG | 0.477899 | 3_1:-9737931 | Msa0347980:CDS |
| GGACCGGTTAACGACAGATT+AGG | 0.482657 | 3_1:+9738625 | None:intergenic |
| GCGCTCAAGAGCAAGGAAAC+AGG | 0.483729 | 3_1:-9738083 | Msa0347980:intron |
| CATGGCAGCCGGTGCTCCAT+CGG | 0.496616 | 3_1:-9738269 | Msa0347980:CDS |
| CGCGCAAGAGGCTGGAATTG+CGG | 0.497998 | 3_1:+9738835 | None:intergenic |
| GATGAAGTTCAGAATCACTT+AGG | 0.504785 | 3_1:-9738784 | Msa0347980:CDS |
| TCTGAACTTCATCAAGGGTA+AGG | 0.505070 | 3_1:+9738794 | None:intergenic |
| GTCCTCTCAATCATGTCCTC+CGG | 0.505376 | 3_1:+9738154 | None:intergenic |
| ATCTGCGAGAAAGCGGGGAC+CGG | 0.507079 | 3_1:-9738173 | Msa0347980:CDS |
| CGTCTTCTTGCTTAACGGAC+CGG | 0.507684 | 3_1:+9738609 | None:intergenic |
| TGGCATTTAGGTTCGGGTGG+TGG | 0.513608 | 3_1:+9736906 | None:intergenic |
| TCAGATAAGTTTCCTACCAC+TGG | 0.525861 | 3_1:+9738205 | None:intergenic |
| GACTGAGCTATGATCTGGCT+CGG | 0.527606 | 3_1:+9738298 | None:intergenic |
| CTGTTGAGAGGAAGCAGAAG+AGG | 0.527853 | 3_1:-9738132 | Msa0347980:CDS |
| TACAGATGGTCAGGTGGCGT+TGG | 0.529554 | 3_1:-9738233 | Msa0347980:CDS |
| ACAGAAATCTGCGAGAAAGC+GGG | 0.534375 | 3_1:-9738179 | Msa0347980:CDS |
| AACGAGGACACAGCGCAAGC+CGG | 0.540740 | 3_1:-9738670 | Msa0347980:CDS |
| AGTGATTCTGAACTTCATCA+AGG | 0.543380 | 3_1:+9738788 | None:intergenic |
| AACGCCGTCCGATGGAGCAC+CGG | 0.546844 | 3_1:+9738261 | None:intergenic |
| CTGCTGCGCGCTCAAGAGCA+AGG | 0.547968 | 3_1:-9738090 | Msa0347980:CDS |
| CGTTCCGTATACAGATGGTC+AGG | 0.553919 | 3_1:-9738242 | Msa0347980:CDS |
| TGCTGTGGATGCTGATAGTG+TGG | 0.563676 | 3_1:+9738343 | None:intergenic |
| TTAGGCATACACAACTGAGT+TGG | 0.564109 | 3_1:-9737958 | Msa0347980:intron |
| TGCGAGAAAGCGGGGACCGG+AGG | 0.566566 | 3_1:-9738170 | Msa0347980:CDS |
| GGCAAACCAATCAATTCGCA+TGG | 0.566719 | 3_1:-9738695 | Msa0347980:CDS |
| CGCAATTCCAGCCTCTTGCG+CGG | 0.571844 | 3_1:-9738834 | Msa0347980:CDS |
| CACAGAAATCTGCGAGAAAG+CGG | 0.574514 | 3_1:-9738180 | Msa0347980:CDS |
| GTATACGGAACGCCGTCCGA+TGG | 0.577145 | 3_1:+9738253 | None:intergenic |
| CTGATGATACGCGACGAAGC+TGG | 0.577434 | 3_1:+9736886 | None:intergenic |
| TGAAAAGCTGAGGAAAGAGA+AGG | 0.578797 | 3_1:-9737904 | Msa0347980:intron |
| GCAGCCGGTGCTCCATCGGA+CGG | 0.579352 | 3_1:-9738265 | Msa0347980:CDS |
| GCATCCACAGCAAAGTGTGA+TGG | 0.583686 | 3_1:-9738332 | Msa0347980:CDS |
| AGCTGGCATTTAGGTTCGGG+TGG | 0.592805 | 3_1:+9736903 | None:intergenic |
| GCAATGACTGAGCTATGATC+TGG | 0.599628 | 3_1:+9738293 | None:intergenic |
| TACTGTATCCACGGACCATG+TGG | 0.602459 | 3_1:+9738373 | None:intergenic |
| ACAACACTGACTTTAGGAGT+AGG | 0.608724 | 3_1:+9738427 | None:intergenic |
| ATCAATTCGCATGGAAAACG+AGG | 0.609101 | 3_1:-9738686 | Msa0347980:CDS |
| GTGATTCTGAACTTCATCAA+GGG | 0.610620 | 3_1:+9738789 | None:intergenic |
| CATAGCTCAGTCATTGCACA+TGG | 0.615121 | 3_1:-9738287 | Msa0347980:CDS |
| GACCGGAGGACATGATTGAG+AGG | 0.620098 | 3_1:-9738156 | Msa0347980:CDS |
| GCGTTGGCTTCACCAGTGGT+AGG | 0.620523 | 3_1:-9738217 | Msa0347980:CDS |
| GTCGCCATCACACTTTGCTG+TGG | 0.628005 | 3_1:+9738328 | None:intergenic |
| AAGAGGAAAATGAAAAGCTG+AGG | 0.635284 | 3_1:-9737914 | Msa0347980:CDS |
| GGTTGTGCATACTGTATCCA+CGG | 0.641304 | 3_1:+9738364 | None:intergenic |
| TGATTGAGAGGACTGTTGAG+AGG | 0.642725 | 3_1:-9738144 | Msa0347980:CDS |
| GGTGGCGTTGGCTTCACCAG+TGG | 0.643645 | 3_1:-9738221 | Msa0347980:CDS |
| CAGAAATCTGCGAGAAAGCG+GGG | 0.644702 | 3_1:-9738178 | Msa0347980:CDS |
| CCAACAAAACAACGATCATG+AGG | 0.650306 | 3_1:-9738563 | Msa0347980:CDS |
| GACGGCGTTCCGTATACAGA+TGG | 0.652010 | 3_1:-9738247 | Msa0347980:CDS |
| TCCGTATACAGATGGTCAGG+TGG | 0.656234 | 3_1:-9738239 | Msa0347980:CDS |
| CGGTCCGTTAAGCAAGAAGA+CGG | 0.656636 | 3_1:-9738608 | Msa0347980:CDS |
| ACAAAACAACGATCATGAGG+AGG | 0.694318 | 3_1:-9738560 | Msa0347980:CDS |
| GGACCATGTGGAGAAAACTG+TGG | 0.769588 | 3_1:+9738385 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAACAAAAAGATTTTCAA+TGG | + | chr3_1:9737905-9737924 | None:intergenic | 15.0% |
| !! | ATTTACATTCTTAATTCTTA+TGG | - | chr3_1:9738002-9738021 | Msa0347980:intron | 15.0% |
| !!! | TTATTTTCTCAAATTATTAC+CGG | - | chr3_1:9738428-9738447 | Msa0347980:CDS | 15.0% |
| !! | AATTTCAATATCTAAACATT+TGG | - | chr3_1:9738532-9738551 | Msa0347980:CDS | 15.0% |
| !!! | ATTAACAAAAAGATTTTCAA+TGG | + | chr3_1:9737905-9737924 | None:intergenic | 15.0% |
| !! | ATTTACATTCTTAATTCTTA+TGG | - | chr3_1:9738002-9738021 | Msa0347980:intron | 15.0% |
| !!! | TTATTTTCTCAAATTATTAC+CGG | - | chr3_1:9738428-9738447 | Msa0347980:CDS | 15.0% |
| !! | AATTTCAATATCTAAACATT+TGG | - | chr3_1:9738532-9738551 | Msa0347980:CDS | 15.0% |
| !! | AAATTAGAACTTCAATAACA+TGG | + | chr3_1:9737722-9737741 | None:intergenic | 20.0% |
| !! | TTTGCTTAAAAGTTATAGTT+TGG | - | chr3_1:9737877-9737896 | Msa0347980:intron | 20.0% |
| !! | TACTTAATATCAAGAAACTA+AGG | + | chr3_1:9737943-9737962 | None:intergenic | 20.0% |
| !! | TGAAATATCAGAATAATTCT+AGG | + | chr3_1:9738226-9738245 | None:intergenic | 20.0% |
| !! | TATTCTGATATTTCATGTAT+TGG | - | chr3_1:9738231-9738250 | Msa0347980:CDS | 20.0% |
| !!! | TACTTATTGACTGTTATTAT+TGG | - | chr3_1:9738291-9738310 | Msa0347980:CDS | 20.0% |
| !!! | GAAATTTGAAATCAGTAAAT+TGG | + | chr3_1:9738518-9738537 | None:intergenic | 20.0% |
| !! | TTGATTGTACTATATAAACA+AGG | + | chr3_1:9738575-9738594 | None:intergenic | 20.0% |
| !!! | ATGCTACAAATTCAAATTTT+TGG | - | chr3_1:9738716-9738735 | Msa0347980:CDS | 20.0% |
| !!! | ACAAATTCAAATTTTTGGAA+TGG | - | chr3_1:9738721-9738740 | Msa0347980:CDS | 20.0% |
| !! | AAATTAGAACTTCAATAACA+TGG | + | chr3_1:9737722-9737741 | None:intergenic | 20.0% |
| !! | TTTGCTTAAAAGTTATAGTT+TGG | - | chr3_1:9737877-9737896 | Msa0347980:intron | 20.0% |
| !! | TACTTAATATCAAGAAACTA+AGG | + | chr3_1:9737943-9737962 | None:intergenic | 20.0% |
| !! | TGAAATATCAGAATAATTCT+AGG | + | chr3_1:9738226-9738245 | None:intergenic | 20.0% |
| !! | TATTCTGATATTTCATGTAT+TGG | - | chr3_1:9738231-9738250 | Msa0347980:CDS | 20.0% |
| !!! | TACTTATTGACTGTTATTAT+TGG | - | chr3_1:9738291-9738310 | Msa0347980:CDS | 20.0% |
| !!! | GAAATTTGAAATCAGTAAAT+TGG | + | chr3_1:9738518-9738537 | None:intergenic | 20.0% |
| !! | TTGATTGTACTATATAAACA+AGG | + | chr3_1:9738575-9738594 | None:intergenic | 20.0% |
| !!! | ATGCTACAAATTCAAATTTT+TGG | - | chr3_1:9738716-9738735 | Msa0347980:CDS | 20.0% |
| !!! | ACAAATTCAAATTTTTGGAA+TGG | - | chr3_1:9738721-9738740 | Msa0347980:CDS | 20.0% |
| ! | ATGGAAAAAGTTGTTTACTT+GGG | + | chr3_1:9737759-9737778 | None:intergenic | 25.0% |
| ! | CTAATTACAGTTATAATCCA+TGG | + | chr3_1:9737778-9737797 | None:intergenic | 25.0% |
| !! | CATGGATTATAACTGTAATT+AGG | - | chr3_1:9737776-9737795 | Msa0347980:intron | 25.0% |
| !! | ATCTCAATTTAGTTTCTGTA+CGG | - | chr3_1:9737965-9737984 | Msa0347980:intron | 25.0% |
| ! | TTCTTAATTCTTATGGTGTT+TGG | - | chr3_1:9738009-9738028 | Msa0347980:intron | 25.0% |
| ! | TCTTAATTCTTATGGTGTTT+GGG | - | chr3_1:9738010-9738029 | Msa0347980:intron | 25.0% |
| !! | TTACTGCTTAGAATTTTCTT+TGG | - | chr3_1:9738069-9738088 | Msa0347980:intron | 25.0% |
| ! | AATGAGTAAAAAGATCATGA+AGG | - | chr3_1:9738265-9738284 | Msa0347980:CDS | 25.0% |
| ! | AATACATATGAAGGATTGAA+AGG | + | chr3_1:9738329-9738348 | None:intergenic | 25.0% |
| ! | GCAACAAGATTAATAAACAA+AGG | + | chr3_1:9738647-9738666 | None:intergenic | 25.0% |
| ! | ATGGAAAAAGTTGTTTACTT+GGG | + | chr3_1:9737759-9737778 | None:intergenic | 25.0% |
| ! | CTAATTACAGTTATAATCCA+TGG | + | chr3_1:9737778-9737797 | None:intergenic | 25.0% |
| !! | CATGGATTATAACTGTAATT+AGG | - | chr3_1:9737776-9737795 | Msa0347980:intron | 25.0% |
| !! | ATCTCAATTTAGTTTCTGTA+CGG | - | chr3_1:9737965-9737984 | Msa0347980:intron | 25.0% |
| ! | TTCTTAATTCTTATGGTGTT+TGG | - | chr3_1:9738009-9738028 | Msa0347980:intron | 25.0% |
| ! | TCTTAATTCTTATGGTGTTT+GGG | - | chr3_1:9738010-9738029 | Msa0347980:intron | 25.0% |
| !! | TTACTGCTTAGAATTTTCTT+TGG | - | chr3_1:9738069-9738088 | Msa0347980:intron | 25.0% |
| ! | AATGAGTAAAAAGATCATGA+AGG | - | chr3_1:9738265-9738284 | Msa0347980:CDS | 25.0% |
| ! | AATACATATGAAGGATTGAA+AGG | + | chr3_1:9738329-9738348 | None:intergenic | 25.0% |
| ! | GCAACAAGATTAATAAACAA+AGG | + | chr3_1:9738647-9738666 | None:intergenic | 25.0% |
| !!! | GATGACATTAGAGGATTTTT+TGG | - | chr3_1:9737249-9737268 | Msa0347980:intron | 30.0% |
| AGAAGAGGATGATTAAGAAT+CGG | - | chr3_1:9737635-9737654 | Msa0347980:intron | 30.0% | |
| CATGGAAAAAGTTGTTTACT+TGG | + | chr3_1:9737760-9737779 | None:intergenic | 30.0% | |
| !! | CAAGTAAACAACTTTTTCCA+TGG | - | chr3_1:9737758-9737777 | Msa0347980:intron | 30.0% |
| ! | CTGATATTTCATGTATTGGT+TGG | - | chr3_1:9738235-9738254 | Msa0347980:CDS | 30.0% |
| AGTGTCAGAAATACATATGA+AGG | + | chr3_1:9738338-9738357 | None:intergenic | 30.0% | |
| TGATATTGACACATAAACAC+CGG | + | chr3_1:9738450-9738469 | None:intergenic | 30.0% | |
| !!! | TTGCATAGTGTTTTTTGAAG+AGG | - | chr3_1:9738663-9738682 | Msa0347980:CDS | 30.0% |
| ! | TTTTGCATTAAGCATTTGGA+TGG | - | chr3_1:9738688-9738707 | Msa0347980:CDS | 30.0% |
| TTGGAATGGATGTATCTTTA+TGG | - | chr3_1:9738735-9738754 | Msa0347980:CDS | 30.0% | |
| !!! | GATGACATTAGAGGATTTTT+TGG | - | chr3_1:9737249-9737268 | Msa0347980:intron | 30.0% |
| AGAAGAGGATGATTAAGAAT+CGG | - | chr3_1:9737635-9737654 | Msa0347980:intron | 30.0% | |
| CATGGAAAAAGTTGTTTACT+TGG | + | chr3_1:9737760-9737779 | None:intergenic | 30.0% | |
| !! | CAAGTAAACAACTTTTTCCA+TGG | - | chr3_1:9737758-9737777 | Msa0347980:intron | 30.0% |
| ! | CTGATATTTCATGTATTGGT+TGG | - | chr3_1:9738235-9738254 | Msa0347980:CDS | 30.0% |
| AGTGTCAGAAATACATATGA+AGG | + | chr3_1:9738338-9738357 | None:intergenic | 30.0% | |
| TGATATTGACACATAAACAC+CGG | + | chr3_1:9738450-9738469 | None:intergenic | 30.0% | |
| !!! | TTGCATAGTGTTTTTTGAAG+AGG | - | chr3_1:9738663-9738682 | Msa0347980:CDS | 30.0% |
| ! | TTTTGCATTAAGCATTTGGA+TGG | - | chr3_1:9738688-9738707 | Msa0347980:CDS | 30.0% |
| TTGGAATGGATGTATCTTTA+TGG | - | chr3_1:9738735-9738754 | Msa0347980:CDS | 30.0% | |
| GTGATTCTGAACTTCATCAA+GGG | + | chr3_1:9736966-9736985 | None:intergenic | 35.0% | |
| AGTGATTCTGAACTTCATCA+AGG | + | chr3_1:9736967-9736986 | None:intergenic | 35.0% | |
| GATGAAGTTCAGAATCACTT+AGG | - | chr3_1:9736968-9736987 | Msa0347980:intron | 35.0% | |
| TCAAGGTTCATACTACTTAG+TGG | + | chr3_1:9737007-9737026 | None:intergenic | 35.0% | |
| ! | ACGAGCTTCTGAAAAATGTA+TGG | - | chr3_1:9737026-9737045 | Msa0347980:intron | 35.0% |
| ! | GAAAAATGTATGGACTGTTG+AGG | - | chr3_1:9737036-9737055 | Msa0347980:intron | 35.0% |
| ACGTTGAAAAACAACTTGTC+CGG | + | chr3_1:9737104-9737123 | None:intergenic | 35.0% | |
| !!! | GAGGATTTTTTGGTTAAAGC+AGG | - | chr3_1:9737259-9737278 | Msa0347980:intron | 35.0% |
| !! | GATTCAACAACACTGACTTT+AGG | + | chr3_1:9737334-9737353 | None:intergenic | 35.0% |
| GAAGAGGATGATTAAGAATC+GGG | - | chr3_1:9737636-9737655 | Msa0347980:intron | 35.0% | |
| AGTTGTTTACTTGGGAGAAA+CGG | + | chr3_1:9737751-9737770 | None:intergenic | 35.0% | |
| AAGAGGAAAATGAAAAGCTG+AGG | - | chr3_1:9737838-9737857 | Msa0347980:intron | 35.0% | |
| GAAATTGTGCACTTTGATGT+TGG | - | chr3_1:9738032-9738051 | Msa0347980:intron | 35.0% | |
| GTAAAGGGTCACATATTCTA+TGG | + | chr3_1:9738095-9738114 | None:intergenic | 35.0% | |
| AGTAAGCACAAGACAGTAAA+GGG | + | chr3_1:9738110-9738129 | None:intergenic | 35.0% | |
| AAGTAAGCACAAGACAGTAA+AGG | + | chr3_1:9738111-9738130 | None:intergenic | 35.0% | |
| !! | ACTGTCTTGTGCTTACTTTT+AGG | - | chr3_1:9738113-9738132 | Msa0347980:CDS | 35.0% |
| TTTCTGACACTTCAAACTCA+AGG | - | chr3_1:9738347-9738366 | Msa0347980:CDS | 35.0% | |
| TGTCAATATCATGTCAGTGT+CGG | + | chr3_1:9738385-9738404 | None:intergenic | 35.0% | |
| ! | GGCATTTTGCATTAAGCATT+TGG | - | chr3_1:9738684-9738703 | Msa0347980:CDS | 35.0% |
| ! | GTTTTACATACTCAACTTGC+AGG | - | chr3_1:9738797-9738816 | Msa0347980:CDS | 35.0% |
| GTGATTCTGAACTTCATCAA+GGG | + | chr3_1:9736966-9736985 | None:intergenic | 35.0% | |
| AGTGATTCTGAACTTCATCA+AGG | + | chr3_1:9736967-9736986 | None:intergenic | 35.0% | |
| GATGAAGTTCAGAATCACTT+AGG | - | chr3_1:9736968-9736987 | Msa0347980:intron | 35.0% | |
| TCAAGGTTCATACTACTTAG+TGG | + | chr3_1:9737007-9737026 | None:intergenic | 35.0% | |
| ! | ACGAGCTTCTGAAAAATGTA+TGG | - | chr3_1:9737026-9737045 | Msa0347980:intron | 35.0% |
| ! | GAAAAATGTATGGACTGTTG+AGG | - | chr3_1:9737036-9737055 | Msa0347980:intron | 35.0% |
| ACGTTGAAAAACAACTTGTC+CGG | + | chr3_1:9737104-9737123 | None:intergenic | 35.0% | |
| !!! | GAGGATTTTTTGGTTAAAGC+AGG | - | chr3_1:9737259-9737278 | Msa0347980:intron | 35.0% |
| !! | GATTCAACAACACTGACTTT+AGG | + | chr3_1:9737334-9737353 | None:intergenic | 35.0% |
| GAAGAGGATGATTAAGAATC+GGG | - | chr3_1:9737636-9737655 | Msa0347980:intron | 35.0% | |
| AGTTGTTTACTTGGGAGAAA+CGG | + | chr3_1:9737751-9737770 | None:intergenic | 35.0% | |
| AAGAGGAAAATGAAAAGCTG+AGG | - | chr3_1:9737838-9737857 | Msa0347980:intron | 35.0% | |
| GAAATTGTGCACTTTGATGT+TGG | - | chr3_1:9738032-9738051 | Msa0347980:intron | 35.0% | |
| GTAAAGGGTCACATATTCTA+TGG | + | chr3_1:9738095-9738114 | None:intergenic | 35.0% | |
| AGTAAGCACAAGACAGTAAA+GGG | + | chr3_1:9738110-9738129 | None:intergenic | 35.0% | |
| AAGTAAGCACAAGACAGTAA+AGG | + | chr3_1:9738111-9738130 | None:intergenic | 35.0% | |
| !! | ACTGTCTTGTGCTTACTTTT+AGG | - | chr3_1:9738113-9738132 | Msa0347980:CDS | 35.0% |
| TTTCTGACACTTCAAACTCA+AGG | - | chr3_1:9738347-9738366 | Msa0347980:CDS | 35.0% | |
| TGTCAATATCATGTCAGTGT+CGG | + | chr3_1:9738385-9738404 | None:intergenic | 35.0% | |
| ! | GGCATTTTGCATTAAGCATT+TGG | - | chr3_1:9738684-9738703 | Msa0347980:CDS | 35.0% |
| ! | GTTTTACATACTCAACTTGC+AGG | - | chr3_1:9738797-9738816 | Msa0347980:CDS | 35.0% |
| TCTGAACTTCATCAAGGGTA+AGG | + | chr3_1:9736961-9736980 | None:intergenic | 40.0% | |
| CAGAATCACTTAGGTGACTT+AGG | - | chr3_1:9736977-9736996 | Msa0347980:intron | 40.0% | |
| !! | CATTTTTCAGAAGCTCGTCA+AGG | + | chr3_1:9737024-9737043 | None:intergenic | 40.0% |
| ! | CGTTTTCCATGCGAATTGAT+TGG | + | chr3_1:9737066-9737085 | None:intergenic | 40.0% |
| ATCAATTCGCATGGAAAACG+AGG | - | chr3_1:9737066-9737085 | Msa0347980:intron | 40.0% | |
| CAACCTAATCTGTCGTTAAC+CGG | - | chr3_1:9737124-9737143 | Msa0347980:intron | 40.0% | |
| TCAACCGTCTTCTTGCTTAA+CGG | + | chr3_1:9737151-9737170 | None:intergenic | 40.0% | |
| !! | AGAAGACGGTTGATGAAGTT+TGG | - | chr3_1:9737158-9737177 | Msa0347980:intron | 40.0% |
| !! | CCTCATGATCGTTGTTTTGT+TGG | + | chr3_1:9737192-9737211 | None:intergenic | 40.0% |
| CCAACAAAACAACGATCATG+AGG | - | chr3_1:9737189-9737208 | Msa0347980:intron | 40.0% | |
| ACAAAACAACGATCATGAGG+AGG | - | chr3_1:9737192-9737211 | Msa0347980:intron | 40.0% | |
| TCAAGAGATGCAGTCTACTT+TGG | - | chr3_1:9737222-9737241 | Msa0347980:intron | 40.0% | |
| CAAGAGATGCAGTCTACTTT+GGG | - | chr3_1:9737223-9737242 | Msa0347980:intron | 40.0% | |
| TTTGGGTGAGATGACATTAG+AGG | - | chr3_1:9737240-9737259 | Msa0347980:intron | 40.0% | |
| !! | ACAACACTGACTTTAGGAGT+AGG | + | chr3_1:9737328-9737347 | None:intergenic | 40.0% |
| TCAGATAAGTTTCCTACCAC+TGG | + | chr3_1:9737550-9737569 | None:intergenic | 40.0% | |
| GTTGTTTACTTGGGAGAAAC+GGG | + | chr3_1:9737750-9737769 | None:intergenic | 40.0% | |
| TTAGGCATACACAACTGAGT+TGG | - | chr3_1:9737794-9737813 | Msa0347980:intron | 40.0% | |
| TGAAAAGCTGAGGAAAGAGA+AGG | - | chr3_1:9737848-9737867 | Msa0347980:intron | 40.0% | |
| TGTCTCTGTCAACACTTCAT+AGG | - | chr3_1:9738476-9738495 | Msa0347980:CDS | 40.0% | |
| TCTGAACTTCATCAAGGGTA+AGG | + | chr3_1:9736961-9736980 | None:intergenic | 40.0% | |
| CAGAATCACTTAGGTGACTT+AGG | - | chr3_1:9736977-9736996 | Msa0347980:intron | 40.0% | |
| !! | CATTTTTCAGAAGCTCGTCA+AGG | + | chr3_1:9737024-9737043 | None:intergenic | 40.0% |
| ! | CGTTTTCCATGCGAATTGAT+TGG | + | chr3_1:9737066-9737085 | None:intergenic | 40.0% |
| ATCAATTCGCATGGAAAACG+AGG | - | chr3_1:9737066-9737085 | Msa0347980:intron | 40.0% | |
| CAACCTAATCTGTCGTTAAC+CGG | - | chr3_1:9737124-9737143 | Msa0347980:intron | 40.0% | |
| TCAACCGTCTTCTTGCTTAA+CGG | + | chr3_1:9737151-9737170 | None:intergenic | 40.0% | |
| !! | AGAAGACGGTTGATGAAGTT+TGG | - | chr3_1:9737158-9737177 | Msa0347980:intron | 40.0% |
| !! | CCTCATGATCGTTGTTTTGT+TGG | + | chr3_1:9737192-9737211 | None:intergenic | 40.0% |
| CCAACAAAACAACGATCATG+AGG | - | chr3_1:9737189-9737208 | Msa0347980:intron | 40.0% | |
| ACAAAACAACGATCATGAGG+AGG | - | chr3_1:9737192-9737211 | Msa0347980:intron | 40.0% | |
| TCAAGAGATGCAGTCTACTT+TGG | - | chr3_1:9737222-9737241 | Msa0347980:intron | 40.0% | |
| CAAGAGATGCAGTCTACTTT+GGG | - | chr3_1:9737223-9737242 | Msa0347980:intron | 40.0% | |
| TTTGGGTGAGATGACATTAG+AGG | - | chr3_1:9737240-9737259 | Msa0347980:intron | 40.0% | |
| !! | ACAACACTGACTTTAGGAGT+AGG | + | chr3_1:9737328-9737347 | None:intergenic | 40.0% |
| TCAGATAAGTTTCCTACCAC+TGG | + | chr3_1:9737550-9737569 | None:intergenic | 40.0% | |
| GTTGTTTACTTGGGAGAAAC+GGG | + | chr3_1:9737750-9737769 | None:intergenic | 40.0% | |
| TTAGGCATACACAACTGAGT+TGG | - | chr3_1:9737794-9737813 | Msa0347980:intron | 40.0% | |
| TGAAAAGCTGAGGAAAGAGA+AGG | - | chr3_1:9737848-9737867 | Msa0347980:intron | 40.0% | |
| TGTCTCTGTCAACACTTCAT+AGG | - | chr3_1:9738476-9738495 | Msa0347980:CDS | 40.0% | |
| ! | ATTGAATTTTGCCGCGCAAG+AGG | + | chr3_1:9736932-9736951 | None:intergenic | 45.0% |
| GGCAAACCAATCAATTCGCA+TGG | - | chr3_1:9737057-9737076 | Msa0347980:intron | 45.0% | |
| ! | GGTTAAAGCAGGCGTTGTTT+CGG | - | chr3_1:9737270-9737289 | Msa0347980:intron | 45.0% |
| ! | TTGCCACAGTTTTCTCCACA+TGG | - | chr3_1:9737364-9737383 | Msa0347980:intron | 45.0% |
| GGTTGTGCATACTGTATCCA+CGG | + | chr3_1:9737391-9737410 | None:intergenic | 45.0% | |
| GCAATGACTGAGCTATGATC+TGG | + | chr3_1:9737462-9737481 | None:intergenic | 45.0% | |
| CATAGCTCAGTCATTGCACA+TGG | - | chr3_1:9737465-9737484 | Msa0347980:intron | 45.0% | |
| CACAGAAATCTGCGAGAAAG+CGG | - | chr3_1:9737572-9737591 | Msa0347980:intron | 45.0% | |
| ACAGAAATCTGCGAGAAAGC+GGG | - | chr3_1:9737573-9737592 | Msa0347980:intron | 45.0% | |
| TGATTGAGAGGACTGTTGAG+AGG | - | chr3_1:9737608-9737627 | Msa0347980:intron | 45.0% | |
| CTTCAAACTCAAGGCGTGTT+TGG | - | chr3_1:9738356-9738375 | Msa0347980:CDS | 45.0% | |
| !! | TGAAGTGTTGACAGAGACAC+AGG | + | chr3_1:9738475-9738494 | None:intergenic | 45.0% |
| ! | ACGAAGCTGGCATTTAGGTT+CGG | + | chr3_1:9738856-9738875 | None:intergenic | 45.0% |
| ! | ATTGAATTTTGCCGCGCAAG+AGG | + | chr3_1:9736932-9736951 | None:intergenic | 45.0% |
| GGCAAACCAATCAATTCGCA+TGG | - | chr3_1:9737057-9737076 | Msa0347980:intron | 45.0% | |
| ! | GGTTAAAGCAGGCGTTGTTT+CGG | - | chr3_1:9737270-9737289 | Msa0347980:intron | 45.0% |
| ! | TTGCCACAGTTTTCTCCACA+TGG | - | chr3_1:9737364-9737383 | Msa0347980:intron | 45.0% |
| GGTTGTGCATACTGTATCCA+CGG | + | chr3_1:9737391-9737410 | None:intergenic | 45.0% | |
| GCAATGACTGAGCTATGATC+TGG | + | chr3_1:9737462-9737481 | None:intergenic | 45.0% | |
| CATAGCTCAGTCATTGCACA+TGG | - | chr3_1:9737465-9737484 | Msa0347980:intron | 45.0% | |
| CACAGAAATCTGCGAGAAAG+CGG | - | chr3_1:9737572-9737591 | Msa0347980:intron | 45.0% | |
| ACAGAAATCTGCGAGAAAGC+GGG | - | chr3_1:9737573-9737592 | Msa0347980:intron | 45.0% | |
| TGATTGAGAGGACTGTTGAG+AGG | - | chr3_1:9737608-9737627 | Msa0347980:intron | 45.0% | |
| CTTCAAACTCAAGGCGTGTT+TGG | - | chr3_1:9738356-9738375 | Msa0347980:CDS | 45.0% | |
| !! | TGAAGTGTTGACAGAGACAC+AGG | + | chr3_1:9738475-9738494 | None:intergenic | 45.0% |
| ! | ACGAAGCTGGCATTTAGGTT+CGG | + | chr3_1:9738856-9738875 | None:intergenic | 45.0% |
| GGACCGGTTAACGACAGATT+AGG | + | chr3_1:9737130-9737149 | None:intergenic | 50.0% | |
| ! | CGTCTTCTTGCTTAACGGAC+CGG | + | chr3_1:9737146-9737165 | None:intergenic | 50.0% |
| CGGTCCGTTAAGCAAGAAGA+CGG | - | chr3_1:9737144-9737163 | Msa0347980:intron | 50.0% | |
| GGACCATGTGGAGAAAACTG+TGG | + | chr3_1:9737370-9737389 | None:intergenic | 50.0% | |
| ! | AGTTTTCTCCACATGGTCCG+TGG | - | chr3_1:9737371-9737390 | Msa0347980:intron | 50.0% |
| TACTGTATCCACGGACCATG+TGG | + | chr3_1:9737382-9737401 | None:intergenic | 50.0% | |
| ! | TGCTGTGGATGCTGATAGTG+TGG | + | chr3_1:9737412-9737431 | None:intergenic | 50.0% |
| GCATCCACAGCAAAGTGTGA+TGG | - | chr3_1:9737420-9737439 | Msa0347980:intron | 50.0% | |
| GACTGAGCTATGATCTGGCT+CGG | + | chr3_1:9737457-9737476 | None:intergenic | 50.0% | |
| CGTTCCGTATACAGATGGTC+AGG | - | chr3_1:9737510-9737529 | Msa0347980:intron | 50.0% | |
| TCCGTATACAGATGGTCAGG+TGG | - | chr3_1:9737513-9737532 | Msa0347980:intron | 50.0% | |
| GCCACCTGACCATCTGTATA+CGG | + | chr3_1:9737517-9737536 | None:intergenic | 50.0% | |
| CAGAAATCTGCGAGAAAGCG+GGG | - | chr3_1:9737574-9737593 | Msa0347980:intron | 50.0% | |
| GTCCTCTCAATCATGTCCTC+CGG | + | chr3_1:9737601-9737620 | None:intergenic | 50.0% | |
| CTGTTGAGAGGAAGCAGAAG+AGG | - | chr3_1:9737620-9737639 | Msa0347980:intron | 50.0% | |
| GGAGATCAAAGTTTCGCGTC+TGG | - | chr3_1:9737815-9737834 | Msa0347980:intron | 50.0% | |
| CAAAGTTTCGCGTCTGGAAG+AGG | - | chr3_1:9737821-9737840 | Msa0347980:intron | 50.0% | |
| ! | CGAAGCTGGCATTTAGGTTC+GGG | + | chr3_1:9738855-9738874 | None:intergenic | 50.0% |
| GGACCGGTTAACGACAGATT+AGG | + | chr3_1:9737130-9737149 | None:intergenic | 50.0% | |
| ! | CGTCTTCTTGCTTAACGGAC+CGG | + | chr3_1:9737146-9737165 | None:intergenic | 50.0% |
| CGGTCCGTTAAGCAAGAAGA+CGG | - | chr3_1:9737144-9737163 | Msa0347980:intron | 50.0% | |
| GGACCATGTGGAGAAAACTG+TGG | + | chr3_1:9737370-9737389 | None:intergenic | 50.0% | |
| ! | AGTTTTCTCCACATGGTCCG+TGG | - | chr3_1:9737371-9737390 | Msa0347980:intron | 50.0% |
| TACTGTATCCACGGACCATG+TGG | + | chr3_1:9737382-9737401 | None:intergenic | 50.0% | |
| ! | TGCTGTGGATGCTGATAGTG+TGG | + | chr3_1:9737412-9737431 | None:intergenic | 50.0% |
| GCATCCACAGCAAAGTGTGA+TGG | - | chr3_1:9737420-9737439 | Msa0347980:intron | 50.0% | |
| GACTGAGCTATGATCTGGCT+CGG | + | chr3_1:9737457-9737476 | None:intergenic | 50.0% | |
| CGTTCCGTATACAGATGGTC+AGG | - | chr3_1:9737510-9737529 | Msa0347980:intron | 50.0% | |
| TCCGTATACAGATGGTCAGG+TGG | - | chr3_1:9737513-9737532 | Msa0347980:intron | 50.0% | |
| GCCACCTGACCATCTGTATA+CGG | + | chr3_1:9737517-9737536 | None:intergenic | 50.0% | |
| CAGAAATCTGCGAGAAAGCG+GGG | - | chr3_1:9737574-9737593 | Msa0347980:intron | 50.0% | |
| GTCCTCTCAATCATGTCCTC+CGG | + | chr3_1:9737601-9737620 | None:intergenic | 50.0% | |
| CTGTTGAGAGGAAGCAGAAG+AGG | - | chr3_1:9737620-9737639 | Msa0347980:intron | 50.0% | |
| GGAGATCAAAGTTTCGCGTC+TGG | - | chr3_1:9737815-9737834 | Msa0347980:intron | 50.0% | |
| CAAAGTTTCGCGTCTGGAAG+AGG | - | chr3_1:9737821-9737840 | Msa0347980:intron | 50.0% | |
| ! | CGAAGCTGGCATTTAGGTTC+GGG | + | chr3_1:9738855-9738874 | None:intergenic | 50.0% |
| CAAGAGGCTGGAATTGCGGT+TGG | + | chr3_1:9736916-9736935 | None:intergenic | 55.0% | |
| ! | AATTTTGCCGCGCAAGAGGC+TGG | + | chr3_1:9736928-9736947 | None:intergenic | 55.0% |
| GTCGCCATCACACTTTGCTG+TGG | + | chr3_1:9737427-9737446 | None:intergenic | 55.0% | |
| CAGTCATTGCACATGGCAGC+CGG | - | chr3_1:9737472-9737491 | Msa0347980:intron | 55.0% | |
| GACGGCGTTCCGTATACAGA+TGG | - | chr3_1:9737505-9737524 | Msa0347980:intron | 55.0% | |
| TACAGATGGTCAGGTGGCGT+TGG | - | chr3_1:9737519-9737538 | Msa0347980:intron | 55.0% | |
| GACCGGAGGACATGATTGAG+AGG | - | chr3_1:9737596-9737615 | Msa0347980:intron | 55.0% | |
| GCGCTCAAGAGCAAGGAAAC+AGG | - | chr3_1:9737669-9737688 | Msa0347980:intron | 55.0% | |
| ! | TGGCATTTAGGTTCGGGTGG+TGG | + | chr3_1:9738849-9738868 | None:intergenic | 55.0% |
| ! | AGCTGGCATTTAGGTTCGGG+TGG | + | chr3_1:9738852-9738871 | None:intergenic | 55.0% |
| ACGCGACGAAGCTGGCATTT+AGG | + | chr3_1:9738861-9738880 | None:intergenic | 55.0% | |
| CTGATGATACGCGACGAAGC+TGG | + | chr3_1:9738869-9738888 | None:intergenic | 55.0% | |
| CAAGAGGCTGGAATTGCGGT+TGG | + | chr3_1:9736916-9736935 | None:intergenic | 55.0% | |
| ! | AATTTTGCCGCGCAAGAGGC+TGG | + | chr3_1:9736928-9736947 | None:intergenic | 55.0% |
| GTCGCCATCACACTTTGCTG+TGG | + | chr3_1:9737427-9737446 | None:intergenic | 55.0% | |
| CAGTCATTGCACATGGCAGC+CGG | - | chr3_1:9737472-9737491 | Msa0347980:intron | 55.0% | |
| GACGGCGTTCCGTATACAGA+TGG | - | chr3_1:9737505-9737524 | Msa0347980:intron | 55.0% | |
| TACAGATGGTCAGGTGGCGT+TGG | - | chr3_1:9737519-9737538 | Msa0347980:intron | 55.0% | |
| GACCGGAGGACATGATTGAG+AGG | - | chr3_1:9737596-9737615 | Msa0347980:intron | 55.0% | |
| GCGCTCAAGAGCAAGGAAAC+AGG | - | chr3_1:9737669-9737688 | Msa0347980:intron | 55.0% | |
| ! | TGGCATTTAGGTTCGGGTGG+TGG | + | chr3_1:9738849-9738868 | None:intergenic | 55.0% |
| ! | AGCTGGCATTTAGGTTCGGG+TGG | + | chr3_1:9738852-9738871 | None:intergenic | 55.0% |
| ACGCGACGAAGCTGGCATTT+AGG | + | chr3_1:9738861-9738880 | None:intergenic | 55.0% | |
| CTGATGATACGCGACGAAGC+TGG | + | chr3_1:9738869-9738888 | None:intergenic | 55.0% | |
| CGCGCAAGAGGCTGGAATTG+CGG | + | chr3_1:9736920-9736939 | None:intergenic | 60.0% | |
| CGCAATTCCAGCCTCTTGCG+CGG | - | chr3_1:9736918-9736937 | Msa0347980:CDS | 60.0% | |
| AACGAGGACACAGCGCAAGC+CGG | - | chr3_1:9737082-9737101 | Msa0347980:intron | 60.0% | |
| GTATACGGAACGCCGTCCGA+TGG | + | chr3_1:9737502-9737521 | None:intergenic | 60.0% | |
| !! | GCGTTGGCTTCACCAGTGGT+AGG | - | chr3_1:9737535-9737554 | Msa0347980:intron | 60.0% |
| ATCTGCGAGAAAGCGGGGAC+CGG | - | chr3_1:9737579-9737598 | Msa0347980:intron | 60.0% | |
| CGCGCAAGAGGCTGGAATTG+CGG | + | chr3_1:9736920-9736939 | None:intergenic | 60.0% | |
| CGCAATTCCAGCCTCTTGCG+CGG | - | chr3_1:9736918-9736937 | Msa0347980:CDS | 60.0% | |
| AACGAGGACACAGCGCAAGC+CGG | - | chr3_1:9737082-9737101 | Msa0347980:intron | 60.0% | |
| GTATACGGAACGCCGTCCGA+TGG | + | chr3_1:9737502-9737521 | None:intergenic | 60.0% | |
| !! | GCGTTGGCTTCACCAGTGGT+AGG | - | chr3_1:9737535-9737554 | Msa0347980:intron | 60.0% |
| ATCTGCGAGAAAGCGGGGAC+CGG | - | chr3_1:9737579-9737598 | Msa0347980:intron | 60.0% | |
| CATGGCAGCCGGTGCTCCAT+CGG | - | chr3_1:9737483-9737502 | Msa0347980:intron | 65.0% | |
| AACGCCGTCCGATGGAGCAC+CGG | + | chr3_1:9737494-9737513 | None:intergenic | 65.0% | |
| !! | GGTGGCGTTGGCTTCACCAG+TGG | - | chr3_1:9737531-9737550 | Msa0347980:intron | 65.0% |
| CTGCTGCGCGCTCAAGAGCA+AGG | - | chr3_1:9737662-9737681 | Msa0347980:intron | 65.0% | |
| CATGGCAGCCGGTGCTCCAT+CGG | - | chr3_1:9737483-9737502 | Msa0347980:intron | 65.0% | |
| AACGCCGTCCGATGGAGCAC+CGG | + | chr3_1:9737494-9737513 | None:intergenic | 65.0% | |
| !! | GGTGGCGTTGGCTTCACCAG+TGG | - | chr3_1:9737531-9737550 | Msa0347980:intron | 65.0% |
| CTGCTGCGCGCTCAAGAGCA+AGG | - | chr3_1:9737662-9737681 | Msa0347980:intron | 65.0% | |
| GCAGCCGGTGCTCCATCGGA+CGG | - | chr3_1:9737487-9737506 | Msa0347980:intron | 70.0% | |
| TGCGAGAAAGCGGGGACCGG+AGG | - | chr3_1:9737582-9737601 | Msa0347980:intron | 70.0% | |
| GCAGCCGGTGCTCCATCGGA+CGG | - | chr3_1:9737487-9737506 | Msa0347980:intron | 70.0% | |
| TGCGAGAAAGCGGGGACCGG+AGG | - | chr3_1:9737582-9737601 | Msa0347980:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 9736875 | 9738899 | 9736875 | ID=Msa0347980;Name=Msa0347980 |
| chr3_1 | mRNA | 9736875 | 9738899 | 9736875 | ID=Msa0347980-mRNA-1;Parent=Msa0347980;Name=Msa0347980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|322 |
| chr3_1 | exon | 9738084 | 9738899 | 9738084 | ID=Msa0347980-mRNA-1:exon:2759;Parent=Msa0347980-mRNA-1 |
| chr3_1 | exon | 9737905 | 9737976 | 9737905 | ID=Msa0347980-mRNA-1:exon:2758;Parent=Msa0347980-mRNA-1 |
| chr3_1 | exon | 9736875 | 9736955 | 9736875 | ID=Msa0347980-mRNA-1:exon:2757;Parent=Msa0347980-mRNA-1 |
| chr3_1 | CDS | 9738084 | 9738899 | 9738084 | ID=Msa0347980-mRNA-1:cds;Parent=Msa0347980-mRNA-1 |
| chr3_1 | CDS | 9737905 | 9737976 | 9737905 | ID=Msa0347980-mRNA-1:cds;Parent=Msa0347980-mRNA-1 |
| chr3_1 | CDS | 9736875 | 9736955 | 9736875 | ID=Msa0347980-mRNA-1:cds;Parent=Msa0347980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
