Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348490 | KEH32948.1 | 55.752 | 113 | 32 | 2 | 32 | 144 | 751 | 845 | 3.66e-21 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348490 | A0A072UV75 | 55.752 | 113 | 32 | 2 | 32 | 144 | 751 | 845 | 1.75e-21 | 100 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0348490 | Msa0743720 | 0.806228 | 9.109868e-50 | -8.615850e-47 |
| Msa0348490 | Msa0771720 | 0.800810 | 1.210336e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATCAAACAGGGGATTAC+TGG | 0.292773 | 3_1:-11003425 | Msa0348490:CDS |
| CATTGGAATGCTAAAGATAA+AGG | 0.349647 | 3_1:+11002734 | None:intergenic |
| AGTTAATTATCAAAATTTCT+TGG | 0.353530 | 3_1:-11002881 | Msa0348490:CDS |
| TCAAGAGATGCCTATCAAAC+AGG | 0.355135 | 3_1:-11003435 | Msa0348490:CDS |
| CCGGAAAGTTAGACAATTCA+TGG | 0.379954 | 3_1:-11003466 | Msa0348490:intron |
| CCAGTAATCCCCTGTTTGAT+AGG | 0.380813 | 3_1:+11003425 | None:intergenic |
| GCTGTTACTATCGTTGCATC+TGG | 0.436879 | 3_1:-11004411 | Msa0348490:CDS |
| AGGTTCCGTTCTTAAAATGA+TGG | 0.464698 | 3_1:+11003327 | None:intergenic |
| ATTTCCCGTCTTTGTTGTGT+AGG | 0.482578 | 3_1:-11002909 | Msa0348490:CDS |
| TTTCCCGTCTTTGTTGTGTA+GGG | 0.506212 | 3_1:-11002908 | Msa0348490:CDS |
| AAGTGCATTTCACTTGTGAC+GGG | 0.517739 | 3_1:-11003383 | Msa0348490:CDS |
| CAAGAGATGCCTATCAAACA+GGG | 0.521853 | 3_1:-11003434 | Msa0348490:CDS |
| CAAGTGCATTTCACTTGTGA+CGG | 0.523247 | 3_1:-11003384 | Msa0348490:CDS |
| GATTTACACAAAGCATTGGC+TGG | 0.542106 | 3_1:-11002809 | Msa0348490:CDS |
| CGTCACAAGTGAAATGCACT+TGG | 0.553967 | 3_1:+11003385 | None:intergenic |
| CAGCGAAAGAAAACATCGAA+GGG | 0.554085 | 3_1:-11002832 | Msa0348490:CDS |
| CACAAGTGAAATGCACTTGG+TGG | 0.555801 | 3_1:+11003388 | None:intergenic |
| AGGGGATTTACACAAAGCAT+TGG | 0.555854 | 3_1:-11002813 | Msa0348490:CDS |
| CATTTCACTTGTGACGGGGA+GGG | 0.560225 | 3_1:-11003378 | Msa0348490:CDS |
| GAGAACTGAAGAAATTCACT+TGG | 0.571406 | 3_1:-11003285 | Msa0348490:CDS |
| TGTTCCCTACACAACAAAGA+CGG | 0.595045 | 3_1:+11002904 | None:intergenic |
| GTTCCCTACACAACAAAGAC+GGG | 0.597581 | 3_1:+11002905 | None:intergenic |
| GCATTTCACTTGTGACGGGG+AGG | 0.612305 | 3_1:-11003379 | Msa0348490:CDS |
| CCAGCGAAAGAAAACATCGA+AGG | 0.615288 | 3_1:-11002833 | Msa0348490:CDS |
| ATGTAGCTGTAGCGCTTACG+TGG | 0.623472 | 3_1:+11002784 | None:intergenic |
| GTTAGTAATTAAAGATGCAG+CGG | 0.630195 | 3_1:-11002934 | Msa0348490:intron |
| AGCGAAAGAAAACATCGAAG+GGG | 0.684389 | 3_1:-11002831 | Msa0348490:CDS |
| AGTGCATTTCACTTGTGACG+GGG | 0.697099 | 3_1:-11003382 | Msa0348490:CDS |
| AAGAGATGCCTATCAAACAG+GGG | 0.716771 | 3_1:-11003433 | Msa0348490:CDS |
| AGATGCAACGATAGTAACAG+CGG | 0.722896 | 3_1:+11004413 | None:intergenic |
| AAATGCACTTGGTGGCATCG+TGG | 0.763766 | 3_1:+11003396 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATATTTTCAAAGATTT+AGG | - | chr3_1:11003159-11003178 | Msa0348490:intron | 10.0% |
| !!! | TGATTAATGAATTTTTTTTT+AGG | - | chr3_1:11003305-11003324 | Msa0348490:CDS | 10.0% |
| !!! | TTTACTCTAAAATTAAATAA+AGG | - | chr3_1:11003484-11003503 | Msa0348490:intron | 10.0% |
| !! | CAAAAAAAAAAATTACTTTA+TGG | + | chr3_1:11003570-11003589 | None:intergenic | 10.0% |
| !!! | TTAAATATTTTCAAAGATTT+AGG | - | chr3_1:11003159-11003178 | Msa0348490:intron | 10.0% |
| !!! | TGATTAATGAATTTTTTTTT+AGG | - | chr3_1:11003305-11003324 | Msa0348490:CDS | 10.0% |
| !!! | TTTACTCTAAAATTAAATAA+AGG | - | chr3_1:11003484-11003503 | Msa0348490:intron | 10.0% |
| !! | CAAAAAAAAAAATTACTTTA+TGG | + | chr3_1:11003570-11003589 | None:intergenic | 10.0% |
| !!! | ATTCTGTTGTATAATATTTT+AGG | - | chr3_1:11002834-11002853 | Msa0348490:CDS | 15.0% |
| !!! | TCTTAATCTAAACTTTTATA+AGG | - | chr3_1:11003211-11003230 | Msa0348490:intron | 15.0% |
| !!! | CTTAATCTAAACTTTTATAA+GGG | - | chr3_1:11003212-11003231 | Msa0348490:intron | 15.0% |
| !!! | TAAAACTTCAACATTTATTT+TGG | + | chr3_1:11003523-11003542 | None:intergenic | 15.0% |
| !! | AGTTAATTATCAAAATTTCT+TGG | - | chr3_1:11004279-11004298 | Msa0348490:intron | 15.0% |
| !!! | ATTCTGTTGTATAATATTTT+AGG | - | chr3_1:11002834-11002853 | Msa0348490:CDS | 15.0% |
| !!! | TCTTAATCTAAACTTTTATA+AGG | - | chr3_1:11003211-11003230 | Msa0348490:intron | 15.0% |
| !!! | CTTAATCTAAACTTTTATAA+GGG | - | chr3_1:11003212-11003231 | Msa0348490:intron | 15.0% |
| !!! | TAAAACTTCAACATTTATTT+TGG | + | chr3_1:11003523-11003542 | None:intergenic | 15.0% |
| !! | AGTTAATTATCAAAATTTCT+TGG | - | chr3_1:11004279-11004298 | Msa0348490:intron | 15.0% |
| !! | CAAAAAAGATACATTATCAT+AGG | + | chr3_1:11002781-11002800 | None:intergenic | 20.0% |
| !! | TATTATAGTATGATTGAATG+CGG | - | chr3_1:11003105-11003124 | Msa0348490:intron | 20.0% |
| !!! | AATATTTTCAAAGATTTAGG+TGG | - | chr3_1:11003162-11003181 | Msa0348490:intron | 20.0% |
| !!! | CTCTTTTGTTTGTAAATTTA+TGG | - | chr3_1:11003275-11003294 | Msa0348490:intron | 20.0% |
| !!! | TTTAGAGTAAATTGACATTT+TGG | + | chr3_1:11003475-11003494 | None:intergenic | 20.0% |
| !!! | TGAAGTTTTATTATCTGATT+AGG | - | chr3_1:11003533-11003552 | Msa0348490:intron | 20.0% |
| !!! | GAAGTTTTATTATCTGATTA+GGG | - | chr3_1:11003534-11003553 | Msa0348490:intron | 20.0% |
| !!! | AAGTTTTATTATCTGATTAG+GGG | - | chr3_1:11003535-11003554 | Msa0348490:intron | 20.0% |
| !! | CAAAAAAGATACATTATCAT+AGG | + | chr3_1:11002781-11002800 | None:intergenic | 20.0% |
| !! | TATTATAGTATGATTGAATG+CGG | - | chr3_1:11003105-11003124 | Msa0348490:intron | 20.0% |
| !!! | AATATTTTCAAAGATTTAGG+TGG | - | chr3_1:11003162-11003181 | Msa0348490:intron | 20.0% |
| !!! | CTCTTTTGTTTGTAAATTTA+TGG | - | chr3_1:11003275-11003294 | Msa0348490:intron | 20.0% |
| !!! | TTTAGAGTAAATTGACATTT+TGG | + | chr3_1:11003475-11003494 | None:intergenic | 20.0% |
| !!! | TGAAGTTTTATTATCTGATT+AGG | - | chr3_1:11003533-11003552 | Msa0348490:intron | 20.0% |
| !!! | GAAGTTTTATTATCTGATTA+GGG | - | chr3_1:11003534-11003553 | Msa0348490:intron | 20.0% |
| !!! | AAGTTTTATTATCTGATTAG+GGG | - | chr3_1:11003535-11003554 | Msa0348490:intron | 20.0% |
| ! | TGAATAGACAAAAATTTCAG+AGG | + | chr3_1:11002907-11002926 | None:intergenic | 25.0% |
| !! | AGTTAAGCTTATGTTGATTA+TGG | - | chr3_1:11003050-11003069 | Msa0348490:intron | 25.0% |
| ! | GCATTCAATCATACTATAAT+AGG | + | chr3_1:11003106-11003125 | None:intergenic | 25.0% |
| ! | GACTAACAAAAACACATTTA+TGG | - | chr3_1:11003366-11003385 | Msa0348490:CDS | 25.0% |
| !!! | GTGTAATTTTGATACATTCA+AGG | - | chr3_1:11003388-11003407 | Msa0348490:CDS | 25.0% |
| ! | TACATTTAGCCAAAAGTTTA+AGG | - | chr3_1:11003597-11003616 | Msa0348490:intron | 25.0% |
| ! | TTATAGTACGTGATTTACAT+AGG | - | chr3_1:11003808-11003827 | Msa0348490:intron | 25.0% |
| ! | AATAAATTCTGAACAGTGAT+AGG | + | chr3_1:11003936-11003955 | None:intergenic | 25.0% |
| ! | TATTCATTCTATGAACCTAA+CGG | - | chr3_1:11003952-11003971 | Msa0348490:intron | 25.0% |
| !! | TTGTTCAATTCTGATAATGT+TGG | + | chr3_1:11004060-11004079 | None:intergenic | 25.0% |
| !! | CTGAATTGATTTACTGATAA+AGG | - | chr3_1:11004179-11004198 | Msa0348490:intron | 25.0% |
| ! | TGAATAGACAAAAATTTCAG+AGG | + | chr3_1:11002907-11002926 | None:intergenic | 25.0% |
| !! | AGTTAAGCTTATGTTGATTA+TGG | - | chr3_1:11003050-11003069 | Msa0348490:intron | 25.0% |
| ! | GCATTCAATCATACTATAAT+AGG | + | chr3_1:11003106-11003125 | None:intergenic | 25.0% |
| ! | GACTAACAAAAACACATTTA+TGG | - | chr3_1:11003366-11003385 | Msa0348490:CDS | 25.0% |
| !!! | GTGTAATTTTGATACATTCA+AGG | - | chr3_1:11003388-11003407 | Msa0348490:CDS | 25.0% |
| ! | TACATTTAGCCAAAAGTTTA+AGG | - | chr3_1:11003597-11003616 | Msa0348490:intron | 25.0% |
| ! | TTATAGTACGTGATTTACAT+AGG | - | chr3_1:11003808-11003827 | Msa0348490:intron | 25.0% |
| ! | AATAAATTCTGAACAGTGAT+AGG | + | chr3_1:11003936-11003955 | None:intergenic | 25.0% |
| ! | TATTCATTCTATGAACCTAA+CGG | - | chr3_1:11003952-11003971 | Msa0348490:intron | 25.0% |
| !! | TTGTTCAATTCTGATAATGT+TGG | + | chr3_1:11004060-11004079 | None:intergenic | 25.0% |
| !! | CTGAATTGATTTACTGATAA+AGG | - | chr3_1:11004179-11004198 | Msa0348490:intron | 25.0% |
| AATTGTCCACTAAAGCAAAT+TGG | - | chr3_1:11002953-11002972 | Msa0348490:intron | 30.0% | |
| !! | TGTGTTTTTGTTAGTCCTTT+AGG | + | chr3_1:11003362-11003381 | None:intergenic | 30.0% |
| !!! | AGAGAAGTACCTTAAACTTT+TGG | + | chr3_1:11003609-11003628 | None:intergenic | 30.0% |
| !! | AGGTTCCATCATTTTAAGAA+CGG | - | chr3_1:11003828-11003847 | Msa0348490:intron | 30.0% |
| !! | TTCTAAGATGATATACCAGA+AGG | - | chr3_1:11004005-11004024 | Msa0348490:intron | 30.0% |
| CAGATTATGCAATAAGGTAA+AGG | - | chr3_1:11004103-11004122 | Msa0348490:intron | 30.0% | |
| AACTTTGCAATCAATTGCTT+TGG | + | chr3_1:11004130-11004149 | None:intergenic | 30.0% | |
| TTGCAAAGTTAACAGTTTCT+TGG | - | chr3_1:11004140-11004159 | Msa0348490:intron | 30.0% | |
| CTCTTTCTAATTCTGATTTC+AGG | - | chr3_1:11004204-11004223 | Msa0348490:intron | 30.0% | |
| GTTAGTAATTAAAGATGCAG+CGG | - | chr3_1:11004226-11004245 | Msa0348490:intron | 30.0% | |
| AATTGTCCACTAAAGCAAAT+TGG | - | chr3_1:11002953-11002972 | Msa0348490:intron | 30.0% | |
| !! | TGTGTTTTTGTTAGTCCTTT+AGG | + | chr3_1:11003362-11003381 | None:intergenic | 30.0% |
| !!! | AGAGAAGTACCTTAAACTTT+TGG | + | chr3_1:11003609-11003628 | None:intergenic | 30.0% |
| !! | AGGTTCCATCATTTTAAGAA+CGG | - | chr3_1:11003828-11003847 | Msa0348490:intron | 30.0% |
| !! | TTCTAAGATGATATACCAGA+AGG | - | chr3_1:11004005-11004024 | Msa0348490:intron | 30.0% |
| CAGATTATGCAATAAGGTAA+AGG | - | chr3_1:11004103-11004122 | Msa0348490:intron | 30.0% | |
| AACTTTGCAATCAATTGCTT+TGG | + | chr3_1:11004130-11004149 | None:intergenic | 30.0% | |
| TTGCAAAGTTAACAGTTTCT+TGG | - | chr3_1:11004140-11004159 | Msa0348490:intron | 30.0% | |
| CTCTTTCTAATTCTGATTTC+AGG | - | chr3_1:11004204-11004223 | Msa0348490:intron | 30.0% | |
| GTTAGTAATTAAAGATGCAG+CGG | - | chr3_1:11004226-11004245 | Msa0348490:intron | 30.0% | |
| CATACACTTGAACATCTTTC+AGG | + | chr3_1:11002876-11002895 | None:intergenic | 35.0% | |
| ! | ACATCACCAATTTGCTTTAG+TGG | + | chr3_1:11002962-11002981 | None:intergenic | 35.0% |
| TGATTGAATGCGGATAATGT+TGG | - | chr3_1:11003115-11003134 | Msa0348490:intron | 35.0% | |
| GTCAAGAGATAGAAAACACT+GGG | + | chr3_1:11003661-11003680 | None:intergenic | 35.0% | |
| CCATGAATTGTCTAACTTTC+CGG | + | chr3_1:11003697-11003716 | None:intergenic | 35.0% | |
| AGGTTCCGTTCTTAAAATGA+TGG | + | chr3_1:11003836-11003855 | None:intergenic | 35.0% | |
| GAGAACTGAAGAAATTCACT+TGG | - | chr3_1:11003875-11003894 | Msa0348490:intron | 35.0% | |
| !!! | AAAGCAAGTTTTGACGGATT+TGG | + | chr3_1:11003978-11003997 | None:intergenic | 35.0% |
| ! | AAATCCGTCAAAACTTGCTT+TGG | - | chr3_1:11003977-11003996 | Msa0348490:intron | 35.0% |
| ! | AATCCGTCAAAACTTGCTTT+GGG | - | chr3_1:11003978-11003997 | Msa0348490:intron | 35.0% |
| TAAGATGATATACCAGAAGG+TGG | - | chr3_1:11004008-11004027 | Msa0348490:intron | 35.0% | |
| CCTTATTGCATAATCTGTCT+AGG | + | chr3_1:11004100-11004119 | None:intergenic | 35.0% | |
| CCTAGACAGATTATGCAATA+AGG | - | chr3_1:11004097-11004116 | Msa0348490:intron | 35.0% | |
| CATACACTTGAACATCTTTC+AGG | + | chr3_1:11002876-11002895 | None:intergenic | 35.0% | |
| ! | ACATCACCAATTTGCTTTAG+TGG | + | chr3_1:11002962-11002981 | None:intergenic | 35.0% |
| TGATTGAATGCGGATAATGT+TGG | - | chr3_1:11003115-11003134 | Msa0348490:intron | 35.0% | |
| GTCAAGAGATAGAAAACACT+GGG | + | chr3_1:11003661-11003680 | None:intergenic | 35.0% | |
| CCATGAATTGTCTAACTTTC+CGG | + | chr3_1:11003697-11003716 | None:intergenic | 35.0% | |
| AGGTTCCGTTCTTAAAATGA+TGG | + | chr3_1:11003836-11003855 | None:intergenic | 35.0% | |
| GAGAACTGAAGAAATTCACT+TGG | - | chr3_1:11003875-11003894 | Msa0348490:intron | 35.0% | |
| !!! | AAAGCAAGTTTTGACGGATT+TGG | + | chr3_1:11003978-11003997 | None:intergenic | 35.0% |
| ! | AAATCCGTCAAAACTTGCTT+TGG | - | chr3_1:11003977-11003996 | Msa0348490:intron | 35.0% |
| ! | AATCCGTCAAAACTTGCTTT+GGG | - | chr3_1:11003978-11003997 | Msa0348490:intron | 35.0% |
| TAAGATGATATACCAGAAGG+TGG | - | chr3_1:11004008-11004027 | Msa0348490:intron | 35.0% | |
| CCTTATTGCATAATCTGTCT+AGG | + | chr3_1:11004100-11004119 | None:intergenic | 35.0% | |
| CCTAGACAGATTATGCAATA+AGG | - | chr3_1:11004097-11004116 | Msa0348490:intron | 35.0% | |
| AGATGCAACGATAGTAACAG+CGG | + | chr3_1:11002750-11002769 | None:intergenic | 40.0% | |
| !! | TAGGTGGTTCTAGAGTAACT+TGG | - | chr3_1:11003178-11003197 | Msa0348490:intron | 40.0% |
| AGACACATTCGAGAACCTAA+AGG | - | chr3_1:11003344-11003363 | Msa0348490:intron | 40.0% | |
| GGTCAAGAGATAGAAAACAC+TGG | + | chr3_1:11003662-11003681 | None:intergenic | 40.0% | |
| TTTCTATCTCTTGACCTCCT+TGG | - | chr3_1:11003666-11003685 | Msa0348490:intron | 40.0% | |
| CCGGAAAGTTAGACAATTCA+TGG | - | chr3_1:11003694-11003713 | Msa0348490:intron | 40.0% | |
| TCAAGAGATGCCTATCAAAC+AGG | - | chr3_1:11003725-11003744 | Msa0348490:intron | 40.0% | |
| CAAGAGATGCCTATCAAACA+GGG | - | chr3_1:11003726-11003745 | Msa0348490:intron | 40.0% | |
| AAGAGATGCCTATCAAACAG+GGG | - | chr3_1:11003727-11003746 | Msa0348490:intron | 40.0% | |
| CAAGTGCATTTCACTTGTGA+CGG | - | chr3_1:11003776-11003795 | Msa0348490:intron | 40.0% | |
| AAGTGCATTTCACTTGTGAC+GGG | - | chr3_1:11003777-11003796 | Msa0348490:intron | 40.0% | |
| !!! | AAGAACGGAACCTGTTTTTG+TGG | - | chr3_1:11003843-11003862 | Msa0348490:intron | 40.0% |
| CTAACAATCGCCACAAAAAC+AGG | + | chr3_1:11003856-11003875 | None:intergenic | 40.0% | |
| GGAGTCAGGCATATATAACA+TGG | + | chr3_1:11003915-11003934 | None:intergenic | 40.0% | |
| ! | ATTTCCCGTCTTTGTTGTGT+AGG | - | chr3_1:11004251-11004270 | Msa0348490:intron | 40.0% |
| ! | TTTCCCGTCTTTGTTGTGTA+GGG | - | chr3_1:11004252-11004271 | Msa0348490:intron | 40.0% |
| TGTTCCCTACACAACAAAGA+CGG | + | chr3_1:11004259-11004278 | None:intergenic | 40.0% | |
| ! | TTCGATGTTTTCTTTCGCTG+GGG | + | chr3_1:11004328-11004347 | None:intergenic | 40.0% |
| ! | CTTCGATGTTTTCTTTCGCT+GGG | + | chr3_1:11004329-11004348 | None:intergenic | 40.0% |
| CAGCGAAAGAAAACATCGAA+GGG | - | chr3_1:11004328-11004347 | Msa0348490:intron | 40.0% | |
| AGCGAAAGAAAACATCGAAG+GGG | - | chr3_1:11004329-11004348 | Msa0348490:intron | 40.0% | |
| AGGGGATTTACACAAAGCAT+TGG | - | chr3_1:11004347-11004366 | Msa0348490:intron | 40.0% | |
| !! | GATTTACACAAAGCATTGGC+TGG | - | chr3_1:11004351-11004370 | Msa0348490:intron | 40.0% |
| AGATGCAACGATAGTAACAG+CGG | + | chr3_1:11002750-11002769 | None:intergenic | 40.0% | |
| !! | TAGGTGGTTCTAGAGTAACT+TGG | - | chr3_1:11003178-11003197 | Msa0348490:intron | 40.0% |
| AGACACATTCGAGAACCTAA+AGG | - | chr3_1:11003344-11003363 | Msa0348490:intron | 40.0% | |
| GGTCAAGAGATAGAAAACAC+TGG | + | chr3_1:11003662-11003681 | None:intergenic | 40.0% | |
| TTTCTATCTCTTGACCTCCT+TGG | - | chr3_1:11003666-11003685 | Msa0348490:intron | 40.0% | |
| CCGGAAAGTTAGACAATTCA+TGG | - | chr3_1:11003694-11003713 | Msa0348490:intron | 40.0% | |
| TCAAGAGATGCCTATCAAAC+AGG | - | chr3_1:11003725-11003744 | Msa0348490:intron | 40.0% | |
| CAAGAGATGCCTATCAAACA+GGG | - | chr3_1:11003726-11003745 | Msa0348490:intron | 40.0% | |
| AAGAGATGCCTATCAAACAG+GGG | - | chr3_1:11003727-11003746 | Msa0348490:intron | 40.0% | |
| CAAGTGCATTTCACTTGTGA+CGG | - | chr3_1:11003776-11003795 | Msa0348490:intron | 40.0% | |
| AAGTGCATTTCACTTGTGAC+GGG | - | chr3_1:11003777-11003796 | Msa0348490:intron | 40.0% | |
| !!! | AAGAACGGAACCTGTTTTTG+TGG | - | chr3_1:11003843-11003862 | Msa0348490:intron | 40.0% |
| CTAACAATCGCCACAAAAAC+AGG | + | chr3_1:11003856-11003875 | None:intergenic | 40.0% | |
| GGAGTCAGGCATATATAACA+TGG | + | chr3_1:11003915-11003934 | None:intergenic | 40.0% | |
| ! | ATTTCCCGTCTTTGTTGTGT+AGG | - | chr3_1:11004251-11004270 | Msa0348490:intron | 40.0% |
| ! | TTTCCCGTCTTTGTTGTGTA+GGG | - | chr3_1:11004252-11004271 | Msa0348490:intron | 40.0% |
| TGTTCCCTACACAACAAAGA+CGG | + | chr3_1:11004259-11004278 | None:intergenic | 40.0% | |
| ! | TTCGATGTTTTCTTTCGCTG+GGG | + | chr3_1:11004328-11004347 | None:intergenic | 40.0% |
| ! | CTTCGATGTTTTCTTTCGCT+GGG | + | chr3_1:11004329-11004348 | None:intergenic | 40.0% |
| CAGCGAAAGAAAACATCGAA+GGG | - | chr3_1:11004328-11004347 | Msa0348490:intron | 40.0% | |
| AGCGAAAGAAAACATCGAAG+GGG | - | chr3_1:11004329-11004348 | Msa0348490:intron | 40.0% | |
| AGGGGATTTACACAAAGCAT+TGG | - | chr3_1:11004347-11004366 | Msa0348490:intron | 40.0% | |
| !! | GATTTACACAAAGCATTGGC+TGG | - | chr3_1:11004351-11004370 | Msa0348490:intron | 40.0% |
| GCTGTTACTATCGTTGCATC+TGG | - | chr3_1:11002749-11002768 | Msa0348490:CDS | 45.0% | |
| CCAGTAATCCCCTGTTTGAT+AGG | + | chr3_1:11003738-11003757 | None:intergenic | 45.0% | |
| CCTATCAAACAGGGGATTAC+TGG | - | chr3_1:11003735-11003754 | Msa0348490:intron | 45.0% | |
| CACAAGTGAAATGCACTTGG+TGG | + | chr3_1:11003775-11003794 | None:intergenic | 45.0% | |
| CGTCACAAGTGAAATGCACT+TGG | + | chr3_1:11003778-11003797 | None:intergenic | 45.0% | |
| AGTGCATTTCACTTGTGACG+GGG | - | chr3_1:11003778-11003797 | Msa0348490:intron | 45.0% | |
| TCTGAACAGTGATAGGAGTC+AGG | + | chr3_1:11003929-11003948 | None:intergenic | 45.0% | |
| !!! | TTTTGACGGATTTGGCCGTT+AGG | + | chr3_1:11003970-11003989 | None:intergenic | 45.0% |
| !! | GCTCCCAAAGCAAGTTTTGA+CGG | + | chr3_1:11003984-11004003 | None:intergenic | 45.0% |
| TATACCAGAAGGTGGCTTCT+CGG | - | chr3_1:11004016-11004035 | Msa0348490:intron | 45.0% | |
| GTTCCCTACACAACAAAGAC+GGG | + | chr3_1:11004258-11004277 | None:intergenic | 45.0% | |
| ! | CCTTCGATGTTTTCTTTCGC+TGG | + | chr3_1:11004330-11004349 | None:intergenic | 45.0% |
| CCAGCGAAAGAAAACATCGA+AGG | - | chr3_1:11004327-11004346 | Msa0348490:intron | 45.0% | |
| GCTGTTACTATCGTTGCATC+TGG | - | chr3_1:11002749-11002768 | Msa0348490:CDS | 45.0% | |
| CCAGTAATCCCCTGTTTGAT+AGG | + | chr3_1:11003738-11003757 | None:intergenic | 45.0% | |
| CCTATCAAACAGGGGATTAC+TGG | - | chr3_1:11003735-11003754 | Msa0348490:intron | 45.0% | |
| CACAAGTGAAATGCACTTGG+TGG | + | chr3_1:11003775-11003794 | None:intergenic | 45.0% | |
| CGTCACAAGTGAAATGCACT+TGG | + | chr3_1:11003778-11003797 | None:intergenic | 45.0% | |
| AGTGCATTTCACTTGTGACG+GGG | - | chr3_1:11003778-11003797 | Msa0348490:intron | 45.0% | |
| TCTGAACAGTGATAGGAGTC+AGG | + | chr3_1:11003929-11003948 | None:intergenic | 45.0% | |
| !!! | TTTTGACGGATTTGGCCGTT+AGG | + | chr3_1:11003970-11003989 | None:intergenic | 45.0% |
| !! | GCTCCCAAAGCAAGTTTTGA+CGG | + | chr3_1:11003984-11004003 | None:intergenic | 45.0% |
| TATACCAGAAGGTGGCTTCT+CGG | - | chr3_1:11004016-11004035 | Msa0348490:intron | 45.0% | |
| GTTCCCTACACAACAAAGAC+GGG | + | chr3_1:11004258-11004277 | None:intergenic | 45.0% | |
| ! | CCTTCGATGTTTTCTTTCGC+TGG | + | chr3_1:11004330-11004349 | None:intergenic | 45.0% |
| CCAGCGAAAGAAAACATCGA+AGG | - | chr3_1:11004327-11004346 | Msa0348490:intron | 45.0% | |
| CTAACTTTCCGGCACAACCA+AGG | + | chr3_1:11003686-11003705 | None:intergenic | 50.0% | |
| ! | AAATGCACTTGGTGGCATCG+TGG | + | chr3_1:11003767-11003786 | None:intergenic | 50.0% |
| ! | CATTTCACTTGTGACGGGGA+GGG | - | chr3_1:11003782-11003801 | Msa0348490:intron | 50.0% |
| ATGTAGCTGTAGCGCTTACG+TGG | + | chr3_1:11004379-11004398 | None:intergenic | 50.0% | |
| CTAACTTTCCGGCACAACCA+AGG | + | chr3_1:11003686-11003705 | None:intergenic | 50.0% | |
| ! | AAATGCACTTGGTGGCATCG+TGG | + | chr3_1:11003767-11003786 | None:intergenic | 50.0% |
| ! | CATTTCACTTGTGACGGGGA+GGG | - | chr3_1:11003782-11003801 | Msa0348490:intron | 50.0% |
| ATGTAGCTGTAGCGCTTACG+TGG | + | chr3_1:11004379-11004398 | None:intergenic | 50.0% | |
| CTTGACCTCCTTGGTTGTGC+CGG | - | chr3_1:11003675-11003694 | Msa0348490:intron | 55.0% | |
| ACTTTCCGGCACAACCAAGG+AGG | + | chr3_1:11003683-11003702 | None:intergenic | 55.0% | |
| ! | GCATTTCACTTGTGACGGGG+AGG | - | chr3_1:11003781-11003800 | Msa0348490:intron | 55.0% |
| CTTGACCTCCTTGGTTGTGC+CGG | - | chr3_1:11003675-11003694 | Msa0348490:intron | 55.0% | |
| ACTTTCCGGCACAACCAAGG+AGG | + | chr3_1:11003683-11003702 | None:intergenic | 55.0% | |
| ! | GCATTTCACTTGTGACGGGG+AGG | - | chr3_1:11003781-11003800 | Msa0348490:intron | 55.0% |
| GCATCCGAGAAGCCACCTTC+TGG | + | chr3_1:11004023-11004042 | None:intergenic | 60.0% | |
| GCATCCGAGAAGCCACCTTC+TGG | + | chr3_1:11004023-11004042 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 11002744 | 11004438 | 11002744 | ID=Msa0348490;Name=Msa0348490 |
| chr3_1 | mRNA | 11002744 | 11004438 | 11002744 | ID=Msa0348490-mRNA-1;Parent=Msa0348490;Name=Msa0348490-mRNA-1;_AED=0.43;_eAED=0.59;_QI=0|0|0|1|0|0|4|0|144 |
| chr3_1 | exon | 11004394 | 11004438 | 11004394 | ID=Msa0348490-mRNA-1:exon:2949;Parent=Msa0348490-mRNA-1 |
| chr3_1 | exon | 11003366 | 11003480 | 11003366 | ID=Msa0348490-mRNA-1:exon:2948;Parent=Msa0348490-mRNA-1 |
| chr3_1 | exon | 11003277 | 11003352 | 11003277 | ID=Msa0348490-mRNA-1:exon:2947;Parent=Msa0348490-mRNA-1 |
| chr3_1 | exon | 11002744 | 11002942 | 11002744 | ID=Msa0348490-mRNA-1:exon:2946;Parent=Msa0348490-mRNA-1 |
| chr3_1 | CDS | 11004394 | 11004438 | 11004394 | ID=Msa0348490-mRNA-1:cds;Parent=Msa0348490-mRNA-1 |
| chr3_1 | CDS | 11003366 | 11003480 | 11003366 | ID=Msa0348490-mRNA-1:cds;Parent=Msa0348490-mRNA-1 |
| chr3_1 | CDS | 11003277 | 11003352 | 11003277 | ID=Msa0348490-mRNA-1:cds;Parent=Msa0348490-mRNA-1 |
| chr3_1 | CDS | 11002744 | 11002942 | 11002744 | ID=Msa0348490-mRNA-1:cds;Parent=Msa0348490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
